Query 035904
Match_columns 291
No_of_seqs 192 out of 3277
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 12:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-40 4.3E-45 281.3 24.7 277 4-288 3-287 (313)
2 3rgz_A Protein brassinosteroid 100.0 3.7E-36 1.3E-40 282.4 20.9 274 5-287 10-336 (768)
3 4fcg_A Uncharacterized protein 100.0 2.2E-35 7.4E-40 250.7 18.7 270 5-282 25-314 (328)
4 4eco_A Uncharacterized protein 100.0 2.7E-35 9.2E-40 271.0 14.5 278 5-290 28-423 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 1.8E-33 6E-38 264.4 15.9 269 3-286 265-661 (876)
6 3rgz_A Protein brassinosteroid 100.0 2.4E-31 8E-36 249.8 23.9 237 49-288 417-723 (768)
7 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-30 4.4E-35 220.0 15.6 229 49-283 75-306 (313)
8 2z66_A Variable lymphocyte rec 100.0 5.8E-30 2E-34 215.4 17.1 246 36-284 5-263 (306)
9 2z80_A TOLL-like receptor 2, v 100.0 1.8E-30 6.2E-35 222.7 12.8 252 31-286 23-318 (353)
10 3v47_A TOLL-like receptor 5B a 100.0 4E-29 1.4E-33 221.4 19.9 237 50-287 79-413 (455)
11 1xku_A Decorin; proteoglycan, 100.0 1.3E-28 4.4E-33 209.3 22.0 243 36-289 29-282 (330)
12 3v47_A TOLL-like receptor 5B a 100.0 6.4E-29 2.2E-33 220.1 20.6 134 50-184 30-166 (455)
13 3zyi_A Leucine-rich repeat-con 100.0 1.3E-28 4.5E-33 218.0 20.1 228 50-282 75-303 (452)
14 3zyj_A Leucine-rich repeat-con 100.0 1.9E-28 6.4E-33 216.2 20.0 228 50-282 64-292 (440)
15 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-28 8.6E-33 207.7 19.5 239 37-287 32-281 (332)
16 2id5_A Lingo-1, leucine rich r 100.0 1.9E-28 6.6E-33 218.3 19.6 238 49-289 31-292 (477)
17 3oja_B Anopheles plasmodium-re 100.0 5.5E-28 1.9E-32 221.0 20.3 231 50-286 51-340 (597)
18 3o6n_A APL1; leucine-rich repe 100.0 6.2E-28 2.1E-32 209.7 19.7 231 50-286 45-334 (390)
19 1ozn_A Reticulon 4 receptor; N 100.0 2.7E-28 9.2E-33 203.1 16.3 207 50-258 32-239 (285)
20 2o6q_A Variable lymphocyte rec 100.0 1.7E-27 5.8E-32 196.7 20.4 219 35-259 2-220 (270)
21 1ozn_A Reticulon 4 receptor; N 100.0 2.4E-27 8.2E-32 197.4 21.2 227 52-284 13-240 (285)
22 4fcg_A Uncharacterized protein 100.0 6.2E-28 2.1E-32 204.8 16.9 211 72-290 79-298 (328)
23 2id5_A Lingo-1, leucine rich r 100.0 7.3E-28 2.5E-32 214.6 18.0 237 49-289 55-315 (477)
24 3t6q_A CD180 antigen; protein- 100.0 1.2E-27 4.1E-32 219.2 19.3 108 51-160 255-362 (606)
25 3t6q_A CD180 antigen; protein- 100.0 4.4E-27 1.5E-31 215.5 22.5 240 49-290 277-521 (606)
26 4eco_A Uncharacterized protein 100.0 5.7E-28 2E-32 222.2 15.1 235 49-290 205-477 (636)
27 3o6n_A APL1; leucine-rich repe 99.9 1.2E-26 4E-31 201.7 19.3 226 50-283 69-353 (390)
28 2z66_A Variable lymphocyte rec 99.9 1.7E-26 5.7E-31 194.2 18.7 231 53-290 10-244 (306)
29 2z81_A CD282 antigen, TOLL-lik 99.9 1E-26 3.5E-31 210.6 17.6 155 37-193 3-169 (549)
30 3zyj_A Leucine-rich repeat-con 99.9 4.7E-26 1.6E-30 200.9 20.7 231 51-290 44-275 (440)
31 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-26 5.2E-31 214.6 18.4 238 49-289 24-292 (680)
32 3zyi_A Leucine-rich repeat-con 99.9 4.7E-26 1.6E-30 201.6 20.4 230 52-290 56-286 (452)
33 3oja_B Anopheles plasmodium-re 99.9 1.1E-26 3.8E-31 212.3 16.7 226 50-283 75-359 (597)
34 1xku_A Decorin; proteoglycan, 99.9 5E-26 1.7E-30 193.3 19.5 227 51-290 32-260 (330)
35 4ecn_A Leucine-rich repeat pro 99.9 2E-26 7E-31 216.6 17.4 234 49-290 447-717 (876)
36 2z7x_B TOLL-like receptor 1, v 99.9 3.2E-26 1.1E-30 206.1 17.6 93 195-287 323-417 (520)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-26 1.9E-30 206.4 17.6 108 49-161 51-159 (562)
38 2ft3_A Biglycan; proteoglycan, 99.9 7.4E-26 2.5E-30 192.4 17.2 226 51-290 34-261 (332)
39 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-26 1.3E-30 209.3 16.3 227 51-287 308-538 (606)
40 2z7x_B TOLL-like receptor 1, v 99.9 5.9E-26 2E-30 204.3 17.3 117 169-289 321-440 (520)
41 1ziw_A TOLL-like receptor 3; i 99.9 2.9E-25 9.7E-30 206.1 21.4 159 50-209 329-517 (680)
42 2z80_A TOLL-like receptor 2, v 99.9 2.6E-26 8.8E-31 196.9 13.1 230 54-290 35-297 (353)
43 3rfs_A Internalin B, repeat mo 99.9 1.1E-25 3.6E-30 186.2 16.0 206 71-290 38-243 (272)
44 2o6q_A Variable lymphocyte rec 99.9 7.1E-25 2.4E-29 181.0 20.3 205 74-284 16-220 (270)
45 2z62_A TOLL-like receptor 4, v 99.9 1.6E-25 5.5E-30 185.5 16.5 206 51-259 29-239 (276)
46 3vq2_A TLR4, TOLL-like recepto 99.9 9.2E-26 3.1E-30 206.7 16.1 232 49-286 327-562 (606)
47 1wwl_A Monocyte differentiatio 99.9 1.2E-26 4.1E-31 195.6 8.4 223 52-283 65-310 (312)
48 3oja_A Leucine-rich immune mol 99.9 1.8E-26 6.3E-31 205.7 9.9 221 50-287 34-256 (487)
49 4g8a_A TOLL-like receptor 4; l 99.9 7E-25 2.4E-29 201.5 20.7 107 50-158 52-158 (635)
50 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-25 1.1E-29 210.2 18.8 136 49-185 23-161 (844)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.9E-25 9.8E-30 201.7 17.5 229 49-290 75-470 (562)
52 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-26 5.2E-31 195.4 8.4 217 49-282 33-250 (317)
53 1wwl_A Monocyte differentiatio 99.9 2.9E-27 1E-31 199.4 3.1 246 31-287 24-291 (312)
54 3j0a_A TOLL-like receptor 5; m 99.9 5.6E-25 1.9E-29 208.5 18.0 109 173-282 267-375 (844)
55 2z63_A TOLL-like receptor 4, v 99.9 4.6E-25 1.6E-29 200.5 16.6 232 50-288 282-537 (570)
56 2z62_A TOLL-like receptor 4, v 99.9 6.9E-25 2.4E-29 181.6 15.8 222 58-286 15-241 (276)
57 1p9a_G Platelet glycoprotein I 99.9 2.8E-24 9.6E-29 179.1 19.5 201 49-258 9-209 (290)
58 4fmz_A Internalin; leucine ric 99.9 7.4E-24 2.5E-28 181.1 22.4 220 49-286 87-328 (347)
59 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-25 8.5E-30 188.0 11.6 225 49-290 9-234 (317)
60 4fmz_A Internalin; leucine ric 99.9 6.6E-24 2.3E-28 181.4 19.8 217 49-282 109-346 (347)
61 2z63_A TOLL-like receptor 4, v 99.9 1.2E-24 4.1E-29 197.8 14.8 160 49-210 27-191 (570)
62 2z81_A CD282 antigen, TOLL-lik 99.9 5.9E-25 2E-29 199.0 12.3 120 49-169 49-169 (549)
63 2ast_B S-phase kinase-associat 99.9 4.1E-25 1.4E-29 188.0 9.6 235 50-290 70-314 (336)
64 1o6v_A Internalin A; bacterial 99.9 3.3E-23 1.1E-27 184.0 22.1 218 49-288 176-393 (466)
65 3rfs_A Internalin B, repeat mo 99.9 4.9E-24 1.7E-28 176.1 14.9 205 49-266 40-244 (272)
66 1p9a_G Platelet glycoprotein I 99.9 2.6E-23 8.8E-28 173.3 19.2 203 70-282 6-208 (290)
67 2ca6_A RAN GTPase-activating p 99.9 2.1E-25 7.3E-30 193.4 6.0 236 49-285 31-319 (386)
68 3m19_A Variable lymphocyte rec 99.9 2.2E-23 7.5E-28 170.2 17.1 191 36-234 3-193 (251)
69 3oja_A Leucine-rich immune mol 99.9 3.2E-24 1.1E-28 191.3 13.1 204 70-290 30-234 (487)
70 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.9E-27 179.9 21.3 81 49-136 67-147 (466)
71 3bz5_A Internalin-J, INLJ; leu 99.9 2E-22 6.9E-27 178.2 21.9 207 49-283 41-247 (457)
72 2xwt_C Thyrotropin receptor; s 99.9 3.4E-23 1.2E-27 167.8 15.3 196 74-279 31-236 (239)
73 2xwt_C Thyrotropin receptor; s 99.9 2.2E-23 7.4E-28 169.0 14.1 198 49-254 30-236 (239)
74 1h6u_A Internalin H; cell adhe 99.9 1.1E-22 3.9E-27 170.9 18.4 192 49-258 40-231 (308)
75 4glp_A Monocyte differentiatio 99.9 2.5E-23 8.6E-28 175.1 12.8 225 50-282 64-307 (310)
76 4glp_A Monocyte differentiatio 99.9 1.6E-23 5.4E-28 176.4 10.2 200 51-257 92-307 (310)
77 3m19_A Variable lymphocyte rec 99.9 3.7E-22 1.3E-26 162.9 17.8 181 74-259 14-194 (251)
78 1h6u_A Internalin H; cell adhe 99.9 9.2E-22 3.1E-26 165.4 18.2 198 70-287 37-234 (308)
79 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-21 3.6E-26 173.6 18.5 185 49-258 63-247 (457)
80 2ast_B S-phase kinase-associat 99.9 8.9E-24 3.1E-28 179.7 4.2 232 39-279 38-282 (336)
81 3goz_A Leucine-rich repeat-con 99.9 3.1E-23 1.1E-27 178.3 6.4 236 49-284 21-299 (362)
82 3g06_A SSPH2 (leucine-rich rep 99.9 7.2E-22 2.5E-26 180.0 15.6 232 31-287 15-302 (622)
83 3goz_A Leucine-rich repeat-con 99.9 8E-23 2.7E-27 175.7 7.4 228 54-282 2-266 (362)
84 2o6s_A Variable lymphocyte rec 99.9 1.6E-21 5.4E-26 154.6 13.5 175 77-263 10-184 (208)
85 1z7x_W Ribonuclease inhibitor; 99.9 1.9E-23 6.5E-28 185.1 1.7 230 52-283 144-412 (461)
86 3g06_A SSPH2 (leucine-rich rep 99.9 6.1E-21 2.1E-25 173.9 18.0 173 73-265 100-305 (622)
87 3cvr_A Invasion plasmid antige 99.9 3.6E-21 1.2E-25 173.5 14.8 204 31-266 36-252 (571)
88 4g8a_A TOLL-like receptor 4; l 99.9 1.1E-20 3.9E-25 173.4 16.9 209 72-283 369-581 (635)
89 2ca6_A RAN GTPase-activating p 99.9 1.3E-22 4.5E-27 175.8 3.7 230 49-278 59-339 (386)
90 2o6s_A Variable lymphocyte rec 99.9 6.9E-21 2.3E-25 150.9 12.8 186 36-245 5-190 (208)
91 1z7x_W Ribonuclease inhibitor; 99.8 1.4E-22 4.9E-27 179.5 3.1 183 51-233 86-297 (461)
92 4ay9_X Follicle-stimulating ho 99.8 1.2E-20 4.2E-25 161.3 15.0 235 37-279 8-256 (350)
93 1jl5_A Outer protein YOPM; leu 99.8 3.3E-20 1.1E-24 163.9 17.2 216 50-289 153-418 (454)
94 1jl5_A Outer protein YOPM; leu 99.8 1.1E-19 3.9E-24 160.4 20.3 209 51-289 132-379 (454)
95 4ay9_X Follicle-stimulating ho 99.8 1.9E-20 6.4E-25 160.2 13.5 225 53-287 12-241 (350)
96 3e6j_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 144.8 16.3 163 31-211 12-174 (229)
97 3cvr_A Invasion plasmid antige 99.8 8.2E-20 2.8E-24 164.7 15.3 185 74-289 59-250 (571)
98 1h6t_A Internalin B; cell adhe 99.8 3.1E-19 1E-23 148.7 15.4 173 70-258 42-214 (291)
99 2xot_A Amphoterin-induced prot 99.8 2.7E-19 9.2E-24 153.6 14.8 176 77-257 21-202 (361)
100 1h6t_A Internalin B; cell adhe 99.8 3.4E-19 1.2E-23 148.4 14.8 171 49-235 45-215 (291)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 7.4E-19 2.5E-23 140.4 15.5 153 77-233 14-166 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.4E-23 139.0 15.1 153 54-211 15-168 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.2E-23 139.1 14.6 151 77-232 14-164 (220)
104 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4.2E-23 139.1 14.5 153 101-258 14-166 (220)
105 1m9s_A Internalin B; cell inva 99.8 5.2E-19 1.8E-23 161.0 13.7 171 49-235 42-212 (605)
106 2xot_A Amphoterin-induced prot 99.8 5.7E-19 1.9E-23 151.6 12.1 176 53-233 21-202 (361)
107 4b8c_D Glucose-repressible alc 99.8 4E-20 1.4E-24 172.0 4.0 236 2-254 127-369 (727)
108 3e6j_A Variable lymphocyte rec 99.8 4E-18 1.4E-22 137.0 14.1 156 99-260 20-175 (229)
109 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 156.0 14.6 187 54-258 25-211 (605)
110 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.2E-22 134.2 12.8 153 120-282 41-194 (197)
111 4ezg_A Putative uncharacterize 99.8 3.3E-18 1.1E-22 134.3 12.6 152 96-257 42-194 (197)
112 3ogk_B Coronatine-insensitive 99.8 1.1E-19 3.8E-24 165.9 3.2 231 51-283 271-527 (592)
113 3ogk_B Coronatine-insensitive 99.7 2.1E-19 7.3E-24 163.9 1.9 113 171-283 377-502 (592)
114 1dce_A Protein (RAB geranylger 99.7 7.2E-20 2.4E-24 165.6 -1.9 198 71-276 346-567 (567)
115 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.9E-22 136.6 11.8 171 72-259 17-187 (263)
116 1xeu_A Internalin C; cellular 99.7 6.7E-18 2.3E-22 138.5 9.0 149 70-233 37-185 (263)
117 3sb4_A Hypothetical leucine ri 99.7 1.9E-17 6.5E-22 140.3 9.9 223 49-276 48-328 (329)
118 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.6E-21 120.9 11.6 140 147-289 23-166 (168)
119 3sb4_A Hypothetical leucine ri 99.7 2.1E-17 7.3E-22 140.0 6.0 233 50-290 25-317 (329)
120 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7E-21 123.5 11.1 129 101-233 11-139 (192)
121 2ell_A Acidic leucine-rich nuc 99.7 4.2E-16 1.4E-20 119.0 11.9 132 50-185 24-160 (168)
122 1dce_A Protein (RAB geranylger 99.7 5.9E-19 2E-23 159.6 -5.5 195 49-251 348-567 (567)
123 2p1m_B Transport inhibitor res 99.7 4.9E-18 1.7E-22 154.9 0.4 211 70-282 285-519 (594)
124 2je0_A Acidic leucine-rich nuc 99.7 4.8E-16 1.6E-20 116.3 10.4 128 50-180 17-148 (149)
125 4b8c_D Glucose-repressible alc 99.7 4.8E-17 1.6E-21 151.4 5.8 191 74-279 173-369 (727)
126 4fdw_A Leucine rich hypothetic 99.7 3.5E-15 1.2E-19 129.4 16.6 217 52-282 137-358 (401)
127 2p1m_B Transport inhibitor res 99.6 9.7E-18 3.3E-22 153.0 0.1 112 171-283 371-495 (594)
128 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.4E-20 117.6 13.0 128 53-209 11-139 (192)
129 2wfh_A SLIT homolog 2 protein 99.6 4.3E-15 1.5E-19 116.0 13.2 108 149-257 32-139 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.7E-20 113.7 9.9 130 147-278 16-149 (149)
131 2o6r_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 114.3 11.9 133 125-261 9-141 (177)
132 2o6r_A Variable lymphocyte rec 99.6 8.6E-15 2.9E-19 112.7 13.3 131 100-235 9-139 (177)
133 4fdw_A Leucine rich hypothetic 99.6 1.6E-14 5.5E-19 125.2 16.0 221 50-282 157-383 (401)
134 2wfh_A SLIT homolog 2 protein 99.6 1.5E-14 5.1E-19 112.9 13.5 125 54-184 14-138 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.6 1.5E-14 5E-19 111.3 9.7 130 121-256 17-152 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 3.7E-14 1.3E-18 109.0 10.5 129 49-184 18-152 (176)
137 1ds9_A Outer arm dynein; leuci 99.5 2.8E-16 9.6E-21 123.3 -4.3 109 69-184 43-152 (198)
138 1ds9_A Outer arm dynein; leuci 99.5 3.3E-16 1.1E-20 122.9 -4.0 134 71-211 15-155 (198)
139 3un9_A NLR family member X1; l 99.4 1E-14 3.4E-19 125.3 -0.1 136 74-209 72-224 (372)
140 3g39_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 99.7 10.8 108 149-259 10-117 (170)
141 3g39_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 98.3 11.4 107 124-234 10-116 (170)
142 3un9_A NLR family member X1; l 99.4 7.7E-15 2.6E-19 126.0 -2.7 170 97-266 71-261 (372)
143 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5.3E-17 99.7 10.4 106 150-258 14-119 (174)
144 2r9u_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 96.8 11.5 106 125-234 14-119 (174)
145 2ifg_A High affinity nerve gro 99.2 7.9E-11 2.7E-15 100.2 9.2 103 127-233 12-116 (347)
146 2ifg_A High affinity nerve gro 99.2 8E-11 2.7E-15 100.1 8.6 105 151-258 11-117 (347)
147 4gt6_A Cell surface protein; l 99.1 3.8E-09 1.3E-13 91.4 15.9 108 168-280 261-368 (394)
148 2ra8_A Uncharacterized protein 99.1 1.6E-10 5.4E-15 98.6 6.9 84 195-280 251-341 (362)
149 2ra8_A Uncharacterized protein 99.1 9.8E-11 3.3E-15 99.9 4.9 202 49-255 106-341 (362)
150 4fs7_A Uncharacterized protein 99.0 5.6E-09 1.9E-13 90.3 13.3 202 67-279 155-376 (394)
151 4fs7_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 88.3 13.9 207 68-289 134-361 (394)
152 4gt6_A Cell surface protein; l 98.9 2.6E-08 8.9E-13 86.1 14.7 132 142-281 259-390 (394)
153 4h09_A Hypothetical leucine ri 98.8 2.7E-07 9.2E-12 79.2 16.2 109 167-279 235-343 (379)
154 1io0_A Tropomodulin; LRR prote 98.6 9.9E-09 3.4E-13 79.1 2.8 71 66-136 28-106 (185)
155 1io0_A Tropomodulin; LRR prote 98.6 9.1E-09 3.1E-13 79.3 2.2 114 144-257 32-164 (185)
156 3e4g_A ATP synthase subunit S, 98.5 4.3E-08 1.5E-12 74.1 2.1 101 172-272 61-170 (176)
157 3e4g_A ATP synthase subunit S, 98.5 4.6E-08 1.6E-12 74.0 2.1 87 195-282 60-153 (176)
158 4h09_A Hypothetical leucine ri 98.4 5.5E-06 1.9E-10 71.0 13.2 194 66-268 150-355 (379)
159 3rw6_A Nuclear RNA export fact 98.3 7.6E-07 2.6E-11 72.2 6.7 80 194-275 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.3 9.4E-07 3.2E-11 71.7 6.3 141 37-179 77-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.9E-05 1E-09 59.7 3.0 84 146-229 39-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00017 5.7E-09 55.5 3.6 68 70-137 37-112 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0024 8.2E-08 45.6 5.8 57 199-257 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0067 2.3E-07 43.2 6.4 57 175-233 11-68 (130)
165 2lz0_A Uncharacterized protein 74.5 6.5 0.00022 26.0 5.1 15 142-156 14-28 (100)
166 2lz0_A Uncharacterized protein 73.4 11 0.00037 25.0 6.0 39 166-205 14-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-40 Score=281.29 Aligned_cols=277 Identities=31% Similarity=0.557 Sum_probs=249.2
Q ss_pred CCHHHHHHHHHHHHHhccCCCCccCCCccCCCCccc--cceeEeecCC--CceEEEEecCccccc--cCcccccCCCCCC
Q 035904 4 INTTDQQALLALKARITSDPSNLLAKNWTSITSVCS--WIGITCDVST--HRVTALNISYFGLTG--TISSQVGNLSSLQ 77 (291)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~~~~l~~L~ 77 (291)
=.++|.+||++||+++ .+|. .+.. |..+.++|. |.|+.|+... .+|++|+++++.+++ .+|..+.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~-~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDL-GNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHT-TCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhc-CCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 3678999999999999 5665 5666 988889998 9999997544 799999999999998 8999999999999
Q ss_pred EEeCCC-CccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcc
Q 035904 78 TLDLSH-NQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156 (291)
Q Consensus 78 ~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (291)
+|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+.++..+ ..+++|++|+++
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~ 157 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFD 157 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECC
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHH-hcCCCCCeEECc
Confidence 999995 89998999999999999999999999987777765 899999999999999987676654 489999999999
Q ss_pred cccccccCccccccCC-CCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCC
Q 035904 157 ANNFHGQIPSTLSNCK-QLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGT 235 (291)
Q Consensus 157 ~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 235 (291)
+|.+....|..+..++ .|++|++++|.+.+..|..+..+. |+.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9999878888999998 999999999999888888888887 99999999999988899999999999999999999866
Q ss_pred CCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 236 IPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 236 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
.+. +..+++|++|++++|.+.+.+|..+.. +++|+.|++++|+++|.+|..
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEEEEECCCS
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECcCCcccccCCCC
Confidence 554 778899999999999999888887665 999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-36 Score=282.36 Aligned_cols=274 Identities=30% Similarity=0.448 Sum_probs=180.2
Q ss_pred CHHHHHHHHHHHHHhccCCCCccCCCccCCCCccccceeEeecCCCceEEEEecCcccccc---Cc--------------
Q 035904 5 NTTDQQALLALKARITSDPSNLLAKNWTSITSVCSWIGITCDVSTHRVTALNISYFGLTGT---IS-------------- 67 (291)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~-------------- 67 (291)
.++|.+||++||+.+. ||. .+.. |..+.++|.|.|++|+ ..+|+.|+++++.+.+. ++
T Consensus 10 ~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 10 LYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp HHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred CHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 5789999999999995 777 7776 9988899999999998 68999999999988775 33
Q ss_pred ---------ccccCCCCCCEEeCCCCccccccCc--cccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccc
Q 035904 68 ---------SQVGNLSSLQTLDLSHNQFSGTIPS--SIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLS 136 (291)
Q Consensus 68 ---------~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 136 (291)
..+..+++|++|+|++|.+.+.+|. .+..+++|++|++++|.+.+.+|..++.++++|++|++++|.+.
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 4566778888888888888776776 77788888888888887766666554456777777777777776
Q ss_pred cccChhh--hccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccc
Q 035904 137 GELPANI--FSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQ 214 (291)
Q Consensus 137 ~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 214 (291)
+..+... +..+++|++|++++|.+....+ +..+++|++|++++|.+.+.+|. +..+++|++|++++|.+++.+|.
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 4443331 3455566666666655543222 24555566666666655544444 55556666666666665555555
Q ss_pred cccCCCCCceEEccCcccc----------------------CCCCccccC-CCCCCEEEccCCcccccCchHHHhhCccc
Q 035904 215 DLGNLAELEWLSLPQSFLT----------------------GTIPSSIFN-LTSLLELDFSNNSLTGSFRDDLCQRIPLL 271 (291)
Q Consensus 215 ~~~~~~~L~~L~l~~~~~~----------------------~~~~~~l~~-~~~L~~L~l~~n~i~~~~~~~~~~~~~~L 271 (291)
.+..+++|++|++++|.+. +.+|..+.. +++|++|++++|.+.+.+|..+.. +++|
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L 320 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLL 320 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTC
T ss_pred HHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc-CCCc
Confidence 5555555555555555444 334444433 255666666666665555544433 6666
Q ss_pred cEEEeecceeeeeCCC
Q 035904 272 QRFYMTNNHFTGSIPH 287 (291)
Q Consensus 272 ~~L~l~~n~l~~~ip~ 287 (291)
+.|++++|.++|.+|.
T Consensus 321 ~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 321 ESLALSSNNFSGELPM 336 (768)
T ss_dssp CEEECCSSEEEEECCH
T ss_pred cEEECCCCcccCcCCH
Confidence 6666666666655553
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.2e-35 Score=250.70 Aligned_cols=270 Identities=21% Similarity=0.264 Sum_probs=242.8
Q ss_pred CHHHHHHHHHHHHHhccCCCCccCCCc----cCCCCccccceeEee--------cCCCceEEEEecCccccccCcccccC
Q 035904 5 NTTDQQALLALKARITSDPSNLLAKNW----TSITSVCSWIGITCD--------VSTHRVTALNISYFGLTGTISSQVGN 72 (291)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~~~--------~~~~~l~~L~l~~~~~~~~~~~~~~~ 72 (291)
-.+|.++|++||+.+..++.++... | ....++|.|.|+.|. ....++++|+++++.++ .+|..+.+
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred CchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 3568899999999998899888877 9 567799999999994 23579999999999998 77877888
Q ss_pred CCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhh--------
Q 035904 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIF-------- 144 (291)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------- 144 (291)
+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.++..+.
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 999999999999999 88999999999999999999998 888775 8999999999999888778877653
Q ss_pred ccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCce
Q 035904 145 SYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEW 224 (291)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 224 (291)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+.+|..+..+++|++
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 35899999999999998 778889999999999999999984 5667889999999999999999899999999999999
Q ss_pred EEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 225 LSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 225 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.. +++|+.+++..+.+.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQA 314 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHH
Confidence 999999998899999999999999999999999999988776 999999999987664
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-35 Score=270.96 Aligned_cols=278 Identities=19% Similarity=0.359 Sum_probs=225.1
Q ss_pred CHHHHHHHHHHHHHhccCCCCccC------CCccCCCCcccc---ceeEeecCCCceEEEEecCccccccCcccccCCCC
Q 035904 5 NTTDQQALLALKARITSDPSNLLA------KNWTSITSVCSW---IGITCDVSTHRVTALNISYFGLTGTISSQVGNLSS 75 (291)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~------~~w~~~~~~c~~---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~ 75 (291)
...|.+||.++++++.+.++.... .+|+...++|.| .|++|+. ..+|+.|+++++.+.+.+|..+.++++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcC-CCCEEEEEecCcccCCcCChHHhcCcc
Confidence 357999999999999766544221 249999999999 9999986 489999999999999999999999999
Q ss_pred CCEEeCCCCcc---------------------------------------------------------------------
Q 035904 76 LQTLDLSHNQF--------------------------------------------------------------------- 86 (291)
Q Consensus 76 L~~L~l~~~~~--------------------------------------------------------------------- 86 (291)
|++|+|++|.+
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l 186 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence 99999998843
Q ss_pred ---------ccccCccccCCCCccEEEeecccCcCC-----------------Cchhhhh--cCCCccEEEccCCccccc
Q 035904 87 ---------SGTIPSSIFSISTLKILILGDNQLSGS-----------------FPSFIIS--NMSSIRAIDCNYNSLSGE 138 (291)
Q Consensus 87 ---------~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~ 138 (291)
++ +|..+.++++|++|++++|.+.+. +|..+ . ++++|++|++++|.+.+.
T Consensus 187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSS
T ss_pred hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCcc
Confidence 33 778899999999999999999864 77766 5 899999999999998878
Q ss_pred cChhhhccccCccEEEccccc-ccc-cCccccccC------CCCcEEEcccCcCcCccCc--cCCCCCCccEEEcCCCcc
Q 035904 139 LPANIFSYLPFLKSLALSANN-FHG-QIPSTLSNC------KQLQMLSLSINDFTGAIPK--EIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 139 ~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 208 (291)
+|..+. .+++|++|++++|. ++. .+|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|++++|.+
T Consensus 265 ~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 886654 89999999999998 776 567777665 88999999999988 6777 788899999999999988
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCC-CCEEEccCCcccccCchHHHh-hCccccEEEeecceeeeeCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTS-LLELDFSNNSLTGSFRDDLCQ-RIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~i~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip 286 (291)
++.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.. .+++|+.|++++|.+++.+|
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p 419 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG 419 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence 87777 7777788888888888877 66666777777 888888888877 56654332 12367777777777776666
Q ss_pred CCCC
Q 035904 287 HNLW 290 (291)
Q Consensus 287 ~~~~ 290 (291)
..|.
T Consensus 420 ~~l~ 423 (636)
T 4eco_A 420 KNFD 423 (636)
T ss_dssp CSSC
T ss_pred hhhc
Confidence 6543
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-33 Score=264.36 Aligned_cols=269 Identities=21% Similarity=0.341 Sum_probs=216.1
Q ss_pred CCCHHHHHHHHHHHHHhccCCCCccCCCccCCC-----Cc--ccc------------ceeEeecCCCceEEEEecCcccc
Q 035904 3 NINTTDQQALLALKARITSDPSNLLAKNWTSIT-----SV--CSW------------IGITCDVSTHRVTALNISYFGLT 63 (291)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~~~~~~~~l~~L~l~~~~~~ 63 (291)
+-..+|.+||++||+++ .+| . |+.+. ++ |.| .|+.|+. ..+|+.|+|+++.+.
T Consensus 265 ~~~~~d~~ALl~~k~~l-~~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEAL-DGK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHT-TGG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHc-CCC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCC
Confidence 34568999999999999 445 3 66543 66 999 9999986 689999999999999
Q ss_pred ccCcccccCCCCCCEEeC-CCCccccc-----------------------------------------------------
Q 035904 64 GTISSQVGNLSSLQTLDL-SHNQFSGT----------------------------------------------------- 89 (291)
Q Consensus 64 ~~~~~~~~~l~~L~~L~l-~~~~~~~~----------------------------------------------------- 89 (291)
+.+|+.+.++++|++|+| ++|.+.+.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 66643322
Q ss_pred -----------------------cCccccCCCCccEEEeecccCcC-----------------CCchhh-hhcCCCccEE
Q 035904 90 -----------------------IPSSIFSISTLKILILGDNQLSG-----------------SFPSFI-ISNMSSIRAI 128 (291)
Q Consensus 90 -----------------------~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L 128 (291)
+|..+.++++|+.|++++|.+++ .+|..+ +.++++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 77889999999999999999986 277776 3489999999
Q ss_pred EccCCccccccChhhhccccCccEEEccccc-ccc-cCccccccC-------CCCcEEEcccCcCcCccCc--cCCCCCC
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANN-FHG-QIPSTLSNC-------KQLQMLSLSINDFTGAIPK--EIGNLTK 197 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~--~~~~~~~ 197 (291)
++++|.+.+.+|..+ ..+++|++|++++|. ++. .+|..+..+ ++|++|++++|.+. .+|. .+..+++
T Consensus 497 ~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred ECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 999999887888654 489999999999997 765 566555544 48999999999988 6777 7888899
Q ss_pred ccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCC-CCEEEccCCcccccCchHHHhhC--ccccEE
Q 035904 198 LTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTS-LLELDFSNNSLTGSFRDDLCQRI--PLLQRF 274 (291)
Q Consensus 198 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L 274 (291)
|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+.. . ++|+.|
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~-~~~~~L~~L 649 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA-KSVYVMGSV 649 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT-TCSSCEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc-cccCCCCEE
Confidence 999999999888 667 7888888899999888887 67777778887 888888888887 56643322 3 337777
Q ss_pred EeecceeeeeCC
Q 035904 275 YMTNNHFTGSIP 286 (291)
Q Consensus 275 ~l~~n~l~~~ip 286 (291)
++++|.+++.+|
T Consensus 650 ~Ls~N~l~g~ip 661 (876)
T 4ecn_A 650 DFSYNKIGSEGR 661 (876)
T ss_dssp ECCSSCTTTTSS
T ss_pred ECcCCcCCCccc
Confidence 777777765554
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.4e-31 Score=249.79 Aligned_cols=237 Identities=36% Similarity=0.577 Sum_probs=202.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..+++|++|
T Consensus 417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L 495 (768)
T 3rgz_A 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWI 495 (768)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEE
T ss_pred CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-hcCCCCCEE
Confidence 3578888888888887788888888888888888888887888888888888888888888887777665 788888899
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCc------------------
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPK------------------ 190 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------------ 190 (291)
++++|.+.+.+|..+. .+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+|.
T Consensus 496 ~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp ECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 9988888877776654 788999999999988878888889999999999998877654443
Q ss_pred ----------------------------------------------------cCCCCCCccEEEcCCCcccCCccccccC
Q 035904 191 ----------------------------------------------------EIGNLTKLTELYLGYNKLQGEIPQDLGN 218 (291)
Q Consensus 191 ----------------------------------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 218 (291)
.+..+++|+.|++++|.+++.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 2334577899999999999999999999
Q ss_pred CCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 219 LAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 219 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
++.|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+.. +++|+.|++++|+++|.||..
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEECCSS
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999999999987766 999999999999999999964
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.3e-30 Score=219.99 Aligned_cols=229 Identities=28% Similarity=0.402 Sum_probs=208.8
Q ss_pred CCceEEEEecC-ccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccE
Q 035904 49 THRVTALNISY-FGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 127 (291)
..+|++|++++ +.+.+.+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+ ..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-hcCCCCCe
Confidence 46899999995 89999999999999999999999999998899999999999999999999987777765 89999999
Q ss_pred EEccCCccccccChhhhcccc-CccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCC
Q 035904 128 IDCNYNSLSGELPANIFSYLP-FLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 206 (291)
|++++|.+.+.++..+. .++ +|++|++++|.+....|..+..+. |++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 154 L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred EECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 99999999988888766 665 999999999999888888888887 999999999999888899999999999999999
Q ss_pred cccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecce-eee
Q 035904 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNH-FTG 283 (291)
Q Consensus 207 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 283 (291)
.+++..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|+ +.|
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSSEEES
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCCCccC
Confidence 99866554 788899999999999999889999999999999999999999888875 458999999999996 665
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.8e-30 Score=215.35 Aligned_cols=246 Identities=23% Similarity=0.264 Sum_probs=211.4
Q ss_pred CccccceeEeecC---------CCceEEEEecCccccccCcccccCCCCCCEEeCCCCcccc--ccCccccCCCCccEEE
Q 035904 36 SVCSWIGITCDVS---------THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSG--TIPSSIFSISTLKILI 104 (291)
Q Consensus 36 ~~c~~~~~~~~~~---------~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~ 104 (291)
..|.|.++.|... ..++++|+++++.++...+..+.++++|++|++++|.+.. ..+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 3478888888642 2589999999999996666668999999999999999873 3367778899999999
Q ss_pred eecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcC
Q 035904 105 LGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 184 (291)
+++|.+. .++..+ ..+++|++|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 9999987 666654 78999999999999998333335667899999999999999877788899999999999999999
Q ss_pred cC-ccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchH
Q 035904 185 TG-AIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDD 263 (291)
Q Consensus 185 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~ 263 (291)
.+ ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 85 57888999999999999999999777888999999999999999998777778889999999999999999777766
Q ss_pred HHhhC-ccccEEEeecceeeee
Q 035904 264 LCQRI-PLLQRFYMTNNHFTGS 284 (291)
Q Consensus 264 ~~~~~-~~L~~L~l~~n~l~~~ 284 (291)
+.. + ++|+.|++++|++++.
T Consensus 243 ~~~-~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 LQH-FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCC-CCTTCCEEECTTCCEECS
T ss_pred HHh-hhccCCEEEccCCCeecc
Confidence 555 6 4899999999999853
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=222.74 Aligned_cols=252 Identities=25% Similarity=0.292 Sum_probs=208.0
Q ss_pred ccCCCCccccceeEeecC-----------CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCC
Q 035904 31 WTSITSVCSWIGITCDVS-----------THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSIST 99 (291)
Q Consensus 31 w~~~~~~c~~~~~~~~~~-----------~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 99 (291)
|......|.|.++ |+.+ ..++++|++++|.+++..+..+.++++|++|++++|++++..+..|..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 5555678889886 5422 248999999999999877778999999999999999999777888999999
Q ss_pred ccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccCh-hhhccccCccEEEcccc-cccccCccccccCCCCcEE
Q 035904 100 LKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPA-NIFSYLPFLKSLALSAN-NFHGQIPSTLSNCKQLQML 177 (291)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 177 (291)
|++|++++|++. .++...+..+++|++|++++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|++|
T Consensus 102 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 102 LEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 999999999998 778776799999999999999998 6666 56778999999999998 4665667788999999999
Q ss_pred EcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCC--------------------
Q 035904 178 SLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIP-------------------- 237 (291)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------- 237 (291)
++++|.+.+..|..+..+++|++|++++|.++......+..+++|+.|++++|.+.+..+
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 999999997778899999999999999999874333344567899999999999876432
Q ss_pred -----------ccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 238 -----------SSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 238 -----------~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
..+..+++|++|++++|.++ .+|..++..+++|+.|++++|++++..|
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23456788899999999888 6777665668889999999988876544
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=4e-29 Score=221.38 Aligned_cols=237 Identities=23% Similarity=0.354 Sum_probs=153.6
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCcc--ccCCCCccEEEeecccCcCCCchhhhhcCCCccE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSS--IFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 127 (291)
.+|++|++++|.+++..|..+.++++|++|++++|++++..+.. +..+++|++|++++|.+.+..|..++..+++|++
T Consensus 79 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 79 SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCE
T ss_pred ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccE
Confidence 46677777777666666666667777777777777666433333 6666777777777777664445554566777777
Q ss_pred EEccCCccccccChhhhc---------------------------------cccCccEEEcccc----------------
Q 035904 128 IDCNYNSLSGELPANIFS---------------------------------YLPFLKSLALSAN---------------- 158 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~~~---------------------------------~~~~L~~L~l~~~---------------- 158 (291)
|++++|.+.+..+..+.. .+++|++|++++|
T Consensus 159 L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 159 LDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp EECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred EeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 777776665332221110 1133444444443
Q ss_pred -----------------------------------------------cccccCccccccCCCCcEEEcccCcCcCccCcc
Q 035904 159 -----------------------------------------------NFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKE 191 (291)
Q Consensus 159 -----------------------------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 191 (291)
.+....+..+..+++|++|++++|.+.+..+..
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 318 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA 318 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence 333333445566677777777777777666667
Q ss_pred CCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccc
Q 035904 192 IGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLL 271 (291)
Q Consensus 192 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L 271 (291)
+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++...+..+++|
T Consensus 319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L 397 (455)
T 3v47_A 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSL 397 (455)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcc
Confidence 7777777777777777765556677777777778887777776667777777788888888887774 444444557778
Q ss_pred cEEEeecceeeeeCCC
Q 035904 272 QRFYMTNNHFTGSIPH 287 (291)
Q Consensus 272 ~~L~l~~n~l~~~ip~ 287 (291)
+.|++++|++++..|.
T Consensus 398 ~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 398 QKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEccCCCcccCCCc
Confidence 8888888888777663
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-28 Score=209.28 Aligned_cols=243 Identities=23% Similarity=0.324 Sum_probs=201.2
Q ss_pred CccccceeEeec---------CCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEee
Q 035904 36 SVCSWIGITCDV---------STHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILG 106 (291)
Q Consensus 36 ~~c~~~~~~~~~---------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 106 (291)
..|.+..+.|.. ..+.++.|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 346777777753 13589999999999998878789999999999999999997778999999999999999
Q ss_pred cccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccc--cCccccccCCCCcEEEcccCcC
Q 035904 107 DNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG--QIPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~ 184 (291)
+|.+. .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 109 ~n~l~-~l~~~~---~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 109 KNQLK-ELPEKM---PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SSCCS-BCCSSC---CTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCcCC-ccChhh---cccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 99998 777654 378999999999998 6777777789999999999998853 5567788899999999999988
Q ss_pred cCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHH
Q 035904 185 TGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDL 264 (291)
Q Consensus 185 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 264 (291)
.. +|..+. ++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 74 444433 78899999999888766778888889999999999888776677888889999999999888 666655
Q ss_pred HhhCccccEEEeecceeeeeCCCCC
Q 035904 265 CQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 265 ~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
.. +++|+.|++++|+++ .+|...
T Consensus 260 ~~-l~~L~~L~l~~N~i~-~~~~~~ 282 (330)
T 1xku_A 260 AD-HKYIQVVYLHNNNIS-AIGSND 282 (330)
T ss_dssp TT-CSSCCEEECCSSCCC-CCCTTS
T ss_pred cc-CCCcCEEECCCCcCC-ccChhh
Confidence 44 888999999999988 566543
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=6.4e-29 Score=220.06 Aligned_cols=134 Identities=22% Similarity=0.300 Sum_probs=73.5
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCcccccc-CccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTI-PSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.++++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|.. +.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-FNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT-TTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh-ccCcccCCEE
Confidence 46777777777777666666777777777777766665333 445666666666666666665332332 2555566666
Q ss_pred EccCCccccccCh-hhhccccCccEEEcccccccccCccc-cccCCCCcEEEcccCcC
Q 035904 129 DCNYNSLSGELPA-NIFSYLPFLKSLALSANNFHGQIPST-LSNCKQLQMLSLSINDF 184 (291)
Q Consensus 129 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~ 184 (291)
++++|.+.+..+. ..+..+++|++|++++|.+....+.. +..+++|++|++++|.+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 6665555432221 22334455555555555544333332 34444444444444443
No 13
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-28 Score=217.96 Aligned_cols=228 Identities=22% Similarity=0.282 Sum_probs=204.7
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
.+++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 57999999999999988999999999999999999999777889999999999999999998 77777778999999999
Q ss_pred ccCCccccccChhhhccccCccEEEcccc-cccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSAN-NFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
+++|.+. .++...+..+++|++|++.+| .+....+..+..+++|++|++++|.+.+. | .+..+++|+.|++++|.+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence 9999998 788877889999999999984 45544555788999999999999999854 4 478899999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|++.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcC
Confidence 9878899999999999999999999888888999999999999999998 555555566999999999999986
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=216.25 Aligned_cols=228 Identities=24% Similarity=0.322 Sum_probs=203.9
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
..++.|++++|.+++..+..|.++++|++|+|++|.+....+..|.++++|++|++++|+++ .++...+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence 57999999999999888889999999999999999999777789999999999999999998 77776679999999999
Q ss_pred ccCCccccccChhhhccccCccEEEcccc-cccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSAN-NFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
+++|.+. .++...+..+++|++|++.+| .+....+..+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 9999998 778777889999999999985 455445567889999999999999998 444 478899999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++ .++...+..+++|+.|++++|++.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCcc
Confidence 9777889999999999999999999888888999999999999999999 555556666999999999999985
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.5e-28 Score=207.66 Aligned_cols=239 Identities=25% Similarity=0.342 Sum_probs=188.0
Q ss_pred ccccceeEeecC---------CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeec
Q 035904 37 VCSWIGITCDVS---------THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGD 107 (291)
Q Consensus 37 ~c~~~~~~~~~~---------~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 107 (291)
.|.+..+.|... .++++.|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 367888887532 35799999999999988888899999999999999999977788999999999999999
Q ss_pred ccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccc--cCccccccCCCCcEEEcccCcCc
Q 035904 108 NQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG--QIPSTLSNCKQLQMLSLSINDFT 185 (291)
Q Consensus 108 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~ 185 (291)
|.+. .+|..++ ++|++|++++|.+. .++...+..+++|++|++.+|.+.. ..+..+..+ +|++|++++|.+.
T Consensus 112 n~l~-~l~~~~~---~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 112 NHLV-EIPPNLP---SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SCCC-SCCSSCC---TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CcCC-ccCcccc---ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 9998 7777552 89999999999998 7777777789999999999998853 455566666 7888888888777
Q ss_pred CccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHH
Q 035904 186 GAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLC 265 (291)
Q Consensus 186 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~ 265 (291)
. +|..+. ++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 4 443332 57777778887777666667777777888888887777666666777777888888887777 5665544
Q ss_pred hhCccccEEEeecceeeeeCCC
Q 035904 266 QRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 266 ~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
. +++|+.|++++|+++ .+|.
T Consensus 262 ~-l~~L~~L~l~~N~l~-~~~~ 281 (332)
T 2ft3_A 262 D-LKLLQVVYLHTNNIT-KVGV 281 (332)
T ss_dssp G-CTTCCEEECCSSCCC-BCCT
T ss_pred c-CccCCEEECCCCCCC-ccCh
Confidence 4 777788888877777 4543
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=218.32 Aligned_cols=238 Identities=19% Similarity=0.217 Sum_probs=173.9
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
...++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 357899999999999888888999999999999999998777888999999999999999987 7777767889999999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .+....+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 110 ~Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 99999988 55555566888899999988888777777788888888888888888765556677777777777777777
Q ss_pred cCCccccccCCCCCceEEccCccccCCCC------------------------ccccCCCCCCEEEccCCcccccCchHH
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIP------------------------SSIFNLTSLLELDFSNNSLTGSFRDDL 264 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------~~l~~~~~L~~L~l~~n~i~~~~~~~~ 264 (291)
.+..+..+..+++|+.|++++|...+.++ ..+..+++|+.|++++|.+.+..+ ..
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~ 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG-SM 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-TS
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-hh
Confidence 65545555555555555555544333322 344555666666666666553322 22
Q ss_pred HhhCccccEEEeecceeeeeCCCCC
Q 035904 265 CQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 265 ~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
+..+++|+.|++++|.+++..|..|
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccccCCEEECCCCccceECHHHh
Confidence 2335666666666666664444443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.5e-28 Score=220.97 Aligned_cols=231 Identities=22% Similarity=0.282 Sum_probs=140.4
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
..++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+. .++...+..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEE
Confidence 34566666666665544445556666666666666666544555666666666666666665 34444445666666666
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCcc---------------------
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAI--------------------- 188 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------------------- 188 (291)
+++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 6666665 555555555666666666666655544555555555666655555544211
Q ss_pred --------------------------------------CccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 189 --------------------------------------PKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 189 --------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC
Confidence 123445566777777777776666667777777777777777
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
.+.+ ++..+..+++|+.|++++|.+. .+|..+.. +++|+.|++++|.++ .+|
T Consensus 289 ~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~-l~~L~~L~L~~N~l~-~~~ 340 (597)
T 3oja_B 289 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLK 340 (597)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCC-CCC
T ss_pred CCCC-CCcccccCCCCcEEECCCCCCC-ccCccccc-CCCCCEEECCCCCCC-CcC
Confidence 7764 3444455677777777777776 55555543 677777777777776 344
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=6.2e-28 Score=209.66 Aligned_cols=231 Identities=22% Similarity=0.282 Sum_probs=139.0
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
.+++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEE
Confidence 45666666666665444444566666666666666666444455666666666666666665 33333345666666666
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCcc---------------------
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAI--------------------- 188 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--------------------- 188 (291)
+++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 6666665 555555555666666666666655444445555555555555555543211
Q ss_pred --------------------------------------CccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 189 --------------------------------------PKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 189 --------------------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
...+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 122344566667777777666555666677777777777777
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
.+.+ ++..+..+++|++|++++|.+. .++..+.. +++|+.|++++|+++ .+|
T Consensus 283 ~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~N~i~-~~~ 334 (390)
T 3o6n_A 283 RLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSIV-TLK 334 (390)
T ss_dssp CCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHH-HTTCSEEECCSSCCC-CCC
T ss_pred cCcc-cCcccCCCCCCCEEECCCCcce-ecCccccc-cCcCCEEECCCCccc-eeC
Confidence 7663 3344456677777777777776 45554443 677777777777776 444
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.7e-28 Score=203.12 Aligned_cols=207 Identities=19% Similarity=0.201 Sum_probs=125.3
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeeccc-CcCCCchhhhhcCCCccEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ-LSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L 128 (291)
.++++|+++++.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +. .++...+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEE
Confidence 356666666666665555556666666666666666665555566666666666666665 43 4433334566666666
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 66666665 34344444566666666666666544444456666666666666666544444566666666666666666
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 65555566666666666666666665444455566666666666666653
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.7e-27 Score=196.75 Aligned_cols=219 Identities=25% Similarity=0.357 Sum_probs=191.5
Q ss_pred CCccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCC
Q 035904 35 TSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSF 114 (291)
Q Consensus 35 ~~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 114 (291)
.+.|.|.|..|.- ....+.++++++.++. +|..+. ++|++|++++|++....+..|..+++|++|++++|.+. .+
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TL 76 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-ee
Confidence 4789999988854 3467899999999984 555443 68999999999999766678999999999999999998 78
Q ss_pred chhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCC
Q 035904 115 PSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGN 194 (291)
Q Consensus 115 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 194 (291)
+..++..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 8877789999999999999998 777777788999999999999998777778899999999999999998766677899
Q ss_pred CCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccccc
Q 035904 195 LTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGS 259 (291)
Q Consensus 195 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 259 (291)
+++|+.|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999999999999877677788999999999999999877777788899999999999998643
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.4e-27 Score=197.38 Aligned_cols=227 Identities=21% Similarity=0.242 Sum_probs=195.1
Q ss_pred eEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEcc
Q 035904 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131 (291)
Q Consensus 52 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 131 (291)
-+.++.+++.++. +|.. ..++|++|++++|.++...+..|..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 13 ~~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 3667788888774 4543 3579999999999999766778999999999999999998 4544445899999999999
Q ss_pred CCc-cccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccC
Q 035904 132 YNS-LSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG 210 (291)
Q Consensus 132 ~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 210 (291)
+|. +. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++
T Consensus 89 ~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 997 66 6666667789999999999999997778889999999999999999997777778999999999999999986
Q ss_pred CccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeee
Q 035904 211 EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGS 284 (291)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 284 (291)
..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ++...+..+++|+.|++++|+++..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCC
Confidence 656678899999999999999998888899999999999999999995 5555555699999999999999753
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.2e-28 Score=204.78 Aligned_cols=211 Identities=20% Similarity=0.286 Sum_probs=190.5
Q ss_pred CCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCcc
Q 035904 72 NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLK 151 (291)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 151 (291)
..+++++|++++|++. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .++..+ ..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLR-ALPASI-ASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCC-CCCGGG-GGCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccc-cCcHHH-hcCcCCC
Confidence 4689999999999998 78888999999999999999998 888766 89999999999999998 887764 4899999
Q ss_pred EEEcccccccccCccccc---------cCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCC
Q 035904 152 SLALSANNFHGQIPSTLS---------NCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAEL 222 (291)
Q Consensus 152 ~L~l~~~~~~~~~~~~l~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 222 (291)
+|++++|......|..+. .+++|++|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L 231 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCC
Confidence 999999887767776655 4999999999999998 77888999999999999999998 467779999999
Q ss_pred ceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 223 EWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 223 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
++|++++|.+.+.++..+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|++.+.+|+.++
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCGGGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccHHHh
Confidence 99999999999899999999999999999999999899887655 99999999999999999998875
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=7.3e-28 Score=214.58 Aligned_cols=237 Identities=18% Similarity=0.214 Sum_probs=178.6
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.++|++|++++|.+++..|..|.++++|++|++++|+++...+..|.++++|++|++++|.+. .++...+..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc-cCChhHccccccCCEE
Confidence 467888999988888877888888888999998888888555566788888888888888887 3333344778888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCC------------
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLT------------ 196 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------ 196 (291)
++++|.+. .+....+..+++|++|++.+|.+....+..+..+++|+.|++++|.+....+..+..++
T Consensus 134 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 88888777 44444455777777777777777655555566666777777766666544444444444
Q ss_pred ------------CccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHH
Q 035904 197 ------------KLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDL 264 (291)
Q Consensus 197 ------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 264 (291)
+|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 45555555666664434567888999999999999987777888999999999999999997666555
Q ss_pred HhhCccccEEEeecceeeeeCCCCC
Q 035904 265 CQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 265 ~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
. .+++|+.|++++|.++ .+|...
T Consensus 293 ~-~l~~L~~L~L~~N~l~-~~~~~~ 315 (477)
T 2id5_A 293 R-GLNYLRVLNVSGNQLT-TLEESV 315 (477)
T ss_dssp T-TCTTCCEEECCSSCCS-CCCGGG
T ss_pred c-CcccCCEEECCCCcCc-eeCHhH
Confidence 4 4999999999999998 577544
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.2e-27 Score=219.17 Aligned_cols=108 Identities=28% Similarity=0.371 Sum_probs=49.6
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
.++.|+++++.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEEC
Confidence 4555555555555444444555555555555555554 44444455555555555555444 222222244444444444
Q ss_pred cCCccccccChhhhccccCccEEEcccccc
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNF 160 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (291)
++|.+.+.++...+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 362 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDI 362 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCcc
Confidence 444443333333333344444444444433
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=4.4e-27 Score=215.47 Aligned_cols=240 Identities=21% Similarity=0.222 Sum_probs=209.7
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|
T Consensus 277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred ccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 468999999999998 6788899999999999999999977788999999999999999999878888777999999999
Q ss_pred EccCCccccccC-hhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccC-ccCCCCCCccEEEcCCC
Q 035904 129 DCNYNSLSGELP-ANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIP-KEIGNLTKLTELYLGYN 206 (291)
Q Consensus 129 ~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 206 (291)
++++|.+.+... ...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 999999984331 3345689999999999999987888899999999999999999986654 45889999999999999
Q ss_pred cccCCccccccCCCCCceEEccCccccCC---CCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeee
Q 035904 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGT---IPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 207 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
.+++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+.. +++|+.|++++|++++
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS-LKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc-ccCCCEEECCCCccCc
Confidence 99988888899999999999999998752 2356788999999999999999766665544 9999999999999997
Q ss_pred eCCCCCC
Q 035904 284 SIPHNLW 290 (291)
Q Consensus 284 ~ip~~~~ 290 (291)
..|+.|.
T Consensus 515 ~~~~~l~ 521 (606)
T 3t6q_A 515 SSIEALS 521 (606)
T ss_dssp GGGGGGT
T ss_pred CChhHhC
Confidence 7776653
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=5.7e-28 Score=222.22 Aligned_cols=235 Identities=18% Similarity=0.296 Sum_probs=183.7
Q ss_pred CCceEEEEecCcccccc-----------------Cccccc--CCCCCCEEeCCCCccccccCccccCCCCccEEEeeccc
Q 035904 49 THRVTALNISYFGLTGT-----------------ISSQVG--NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ 109 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 109 (291)
..+|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+.++++|++|++++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 56899999999999885 888888 99999999999999998999999999999999999998
Q ss_pred -CcC-CCchhhhhcC------CCccEEEccCCccccccCh-hhhccccCccEEEcccccccccCccccccCCCCcEEEcc
Q 035904 110 -LSG-SFPSFIISNM------SSIRAIDCNYNSLSGELPA-NIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLS 180 (291)
Q Consensus 110 -~~~-~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 180 (291)
+++ .+|..+ ..+ ++|++|++++|.++ .+|. ..+..+++|++|++++|.+.+.+| .+..+++|++|+++
T Consensus 285 ~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred CCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence 876 677765 444 88899999998888 7776 234588888888888888875666 77777888888888
Q ss_pred cCcCcCccCccCCCCCC-ccEEEcCCCcccCCccccccCCC--CCceEEccCccccCCCCcccc-------CCCCCCEEE
Q 035904 181 INDFTGAIPKEIGNLTK-LTELYLGYNKLQGEIPQDLGNLA--ELEWLSLPQSFLTGTIPSSIF-------NLTSLLELD 250 (291)
Q Consensus 181 ~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~ 250 (291)
+|.+. .+|..+..+++ |+.|++++|.++ .+|..+.... +|++|++++|.+.+..|..+. .+++|++|+
T Consensus 362 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 362 YNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp SSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 88877 66666777777 888888888877 6666665543 677888888777766666665 566777777
Q ss_pred ccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 251 FSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 251 l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
+++|.+. .+|..++..+++|+.|++++|.++ .+|..++
T Consensus 440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 477 (636)
T 4eco_A 440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSL 477 (636)
T ss_dssp CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS
T ss_pred CcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHh
Confidence 7777777 566666655777777777777777 6776554
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-26 Score=201.67 Aligned_cols=226 Identities=20% Similarity=0.282 Sum_probs=180.0
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
++|++|+++++.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..++..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 57888888888888777777888888888888888888666777788888888888888887 67776667788888888
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccC---------------------------------------------
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQI--------------------------------------------- 164 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------------------------- 164 (291)
+++|.+. .++...+..+++|++|++++|.+....
T Consensus 148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred CCCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 8888877 455554556777777777776654211
Q ss_pred --------------ccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 165 --------------PSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 165 --------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
...+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++ .++..+..+++|++|++++|
T Consensus 227 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 227 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp SCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSS
T ss_pred cccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCC
Confidence 123556788999999999998777889999999999999999998 45666778899999999999
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeee
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
.+. .++..+..+++|++|++++|.+.. ++ ...+++|+.|++++|++++
T Consensus 306 ~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 306 HLL-HVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred cce-ecCccccccCcCCEEECCCCccce-eC---chhhccCCEEEcCCCCccc
Confidence 998 556667788999999999999984 33 2348999999999999864
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.7e-26 Score=194.21 Aligned_cols=231 Identities=23% Similarity=0.251 Sum_probs=193.9
Q ss_pred EEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCC--CchhhhhcCCCccEEEc
Q 035904 53 TALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS--FPSFIISNMSSIRAIDC 130 (291)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l 130 (291)
+.++.+++.++ .+|..+ .++|++|++++|+++...+..|..+++|+.|++++|.+... .+..+ ..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEEC
Confidence 46888888887 445433 36899999999999954455678999999999999998722 24444 67999999999
Q ss_pred cCCccccccChhhhccccCccEEEcccccccccCc-cccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCccc
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
++|.+. .++.. +..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 86 s~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhh-cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999998 66665 4589999999999999885544 57889999999999999998778888999999999999999998
Q ss_pred C-CccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 210 G-EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 210 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
+ ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+++..|..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCCCCcccCHHH
Confidence 6 578889999999999999999998778889999999999999999986544444 45899999999999999877766
Q ss_pred CC
Q 035904 289 LW 290 (291)
Q Consensus 289 ~~ 290 (291)
+.
T Consensus 243 ~~ 244 (306)
T 2z66_A 243 LQ 244 (306)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1e-26 Score=210.56 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=111.9
Q ss_pred ccccceeEeecC-----------CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEe
Q 035904 37 VCSWIGITCDVS-----------THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILIL 105 (291)
Q Consensus 37 ~c~~~~~~~~~~-----------~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 105 (291)
.|.|.++ |+.+ ..++++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4677776 5432 247999999999998888888999999999999999998777788889999999999
Q ss_pred ecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEccccc-ccccCccccccCCCCcEEEcccCcC
Q 035904 106 GDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANN-FHGQIPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~ 184 (291)
++|.+. .++...+..+++|++|++++|.+.+......+..+++|++|++++|. +....+..+..+++|++|++++|.+
T Consensus 82 s~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 999888 55555558889999999998888632222334567777777777776 3323334566666666666666666
Q ss_pred cCccCccCC
Q 035904 185 TGAIPKEIG 193 (291)
Q Consensus 185 ~~~~~~~~~ 193 (291)
.+..|..+.
T Consensus 161 ~~~~~~~l~ 169 (549)
T 2z81_A 161 RNYQSQSLK 169 (549)
T ss_dssp CEECTTTTT
T ss_pred cccChhhhh
Confidence 544444443
No 30
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.7e-26 Score=200.87 Aligned_cols=231 Identities=22% Similarity=0.303 Sum_probs=196.1
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
....++.++..++ .+|..+ .++++.|+|++|++....+..|.++++|+.|++++|.+. .++...+.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 3455666777776 455544 378999999999999777889999999999999999998 666666799999999999
Q ss_pred cCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCc-CcCccCccCCCCCCccEEEcCCCccc
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSIND-FTGAIPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..|..+++|+.|++++|.++
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999998 7887778899999999999999987777789999999999999854 44344557899999999999999998
Q ss_pred CCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 210 GEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
.+| .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++ .+|...
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~~~~~~ 274 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLT-LLPHDL 274 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS-TTCTTCCEEECTTSCCC-CCCTTT
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh-cCCCCCCEEECCCCCCC-ccChhH
Confidence 455 47888999999999999998888899999999999999999996555444 45999999999999999 677554
Q ss_pred C
Q 035904 290 W 290 (291)
Q Consensus 290 ~ 290 (291)
+
T Consensus 275 ~ 275 (440)
T 3zyj_A 275 F 275 (440)
T ss_dssp T
T ss_pred h
Confidence 3
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.5e-26 Score=214.58 Aligned_cols=238 Identities=25% Similarity=0.303 Sum_probs=182.9
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..++++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+. .+|...+.++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 357999999999998877778999999999999999998878888999999999999999888 7777666889999999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCC--CCCCccEEEcCCC
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIG--NLTKLTELYLGYN 206 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~ 206 (291)
++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|
T Consensus 103 ~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 99999987 66655566889999999999988877777788889999999999988765554433 4578888888888
Q ss_pred cccCCccccccCC---------------------------CCCceEEccCccccCCCCccccCCC--CCCEEEccCCccc
Q 035904 207 KLQGEIPQDLGNL---------------------------AELEWLSLPQSFLTGTIPSSIFNLT--SLLELDFSNNSLT 257 (291)
Q Consensus 207 ~~~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~i~ 257 (291)
.+++..+..+..+ ++|+.|++++|.+.+..+..+..++ +|++|++++|.+.
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 8876555544432 4566666666666655565665553 3777777777777
Q ss_pred ccCchHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 258 GSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 258 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
+..+..+ ..+++|+.|++++|.+++..|..|
T Consensus 262 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 262 VVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp EECTTTT-TTCTTCCEEECCSCCBSEECTTTT
T ss_pred ccCcccc-cCcccccEeeCCCCccCccChhhh
Confidence 5444433 337777777777777776555544
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.7e-26 Score=201.59 Aligned_cols=230 Identities=22% Similarity=0.318 Sum_probs=194.8
Q ss_pred eEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEcc
Q 035904 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131 (291)
Q Consensus 52 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 131 (291)
...++.++..++ .+|..+ .+++++|++++|++++..+..|.++++|+.|++++|.+. .++...+.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEECC
Confidence 445666666666 455433 368999999999999878899999999999999999998 5565556999999999999
Q ss_pred CCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCc-CcCccCccCCCCCCccEEEcCCCcccC
Q 035904 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSIND-FTGAIPKEIGNLTKLTELYLGYNKLQG 210 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~ 210 (291)
+|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+++
T Consensus 132 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 99998 7888878889999999999999987777789999999999999854 443445578999999999999999984
Q ss_pred CccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 211 EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 211 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
+| .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|++++|.++ .+|...+
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~~~~~~~ 286 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLS-SLPHDLF 286 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCS-CCCTTSS
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHh-cCCCCCCEEECCCCcCC-ccChHHh
Confidence 44 47888999999999999998888899999999999999999996655544 45999999999999999 6776543
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.1e-26 Score=212.33 Aligned_cols=226 Identities=20% Similarity=0.277 Sum_probs=191.7
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|..++..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 58999999999999888888999999999999999999777778899999999999999988 77777778899999999
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccC---------------------------------------------
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQI--------------------------------------------- 164 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------------------------- 164 (291)
+++|.+. .+++..+..+++|++|++++|.+....
T Consensus 154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 9999988 555555567888888888887665321
Q ss_pred --------------ccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 165 --------------PSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 165 --------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 311 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCC
Confidence 1235677889999999999998888899999999999999999984 5767778899999999999
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeee
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
.+. .+|..+..+++|+.|++++|.+.+. + ...+++|+.|++++|++++
T Consensus 312 ~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 312 HLL-HVERNQPQFDRLENLYLDHNSIVTL-K---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCC-CCGGGHHHHTTCSEEECCSSCCCCC-C---CCTTCCCSEEECCSSCEEH
T ss_pred CCC-ccCcccccCCCCCEEECCCCCCCCc-C---hhhcCCCCEEEeeCCCCCC
Confidence 998 5666778899999999999999854 3 2348999999999999875
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5e-26 Score=193.31 Aligned_cols=227 Identities=22% Similarity=0.312 Sum_probs=193.5
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
+++.++++++.++ .+|..+ .+.|++|++++|++++..+..|..+++|++|++++|.+.+..|.. +..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEEC
Confidence 5788999999887 455434 378999999999999776778999999999999999998443544 589999999999
Q ss_pred cCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcC--ccCccCCCCCCccEEEcCCCcc
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG--AIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++|.+. .++..++ ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 108 s~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 999998 7777654 789999999999997777788999999999999999863 5567888999999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
+ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.++ .+|..
T Consensus 184 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 184 T-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp C-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SCCTT
T ss_pred c-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cCChh
Confidence 8 4555443 7899999999999987788899999999999999999865554444 4999999999999999 89987
Q ss_pred CC
Q 035904 289 LW 290 (291)
Q Consensus 289 ~~ 290 (291)
+.
T Consensus 259 l~ 260 (330)
T 1xku_A 259 LA 260 (330)
T ss_dssp TT
T ss_pred hc
Confidence 64
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2e-26 Score=216.57 Aligned_cols=234 Identities=19% Similarity=0.243 Sum_probs=193.4
Q ss_pred CCceEEEEecCccccc-----------------cCccccc--CCCCCCEEeCCCCccccccCccccCCCCccEEEeeccc
Q 035904 49 THRVTALNISYFGLTG-----------------TISSQVG--NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ 109 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 109 (291)
..+|+.|++++|.+++ .+|..+. ++++|++|++++|++.+.+|..+.++++|+.|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5689999999999998 3888877 99999999999999999999999999999999999998
Q ss_pred -CcC-CCchhhhhc-------CCCccEEEccCCccccccCh-hhhccccCccEEEcccccccccCccccccCCCCcEEEc
Q 035904 110 -LSG-SFPSFIISN-------MSSIRAIDCNYNSLSGELPA-NIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSL 179 (291)
Q Consensus 110 -~~~-~~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 179 (291)
+++ .+|..+ .. +++|++|++++|.+. .+|. ..+..+++|++|++++|.+. .+| .+..+++|+.|++
T Consensus 527 ~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 527 GISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CcccccchHHH-HhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 876 677765 44 459999999999998 8887 34558999999999999998 666 8889999999999
Q ss_pred ccCcCcCccCccCCCCCC-ccEEEcCCCcccCCccccccCCCC--CceEEccCccccCCCCccc---c--CCCCCCEEEc
Q 035904 180 SINDFTGAIPKEIGNLTK-LTELYLGYNKLQGEIPQDLGNLAE--LEWLSLPQSFLTGTIPSSI---F--NLTSLLELDF 251 (291)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l---~--~~~~L~~L~l 251 (291)
++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..... |+.|++++|.+.+.++... . .+++|+.|++
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L 680 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence 999998 77888888998 999999999988 67777766543 8889999888876544322 2 3457888888
Q ss_pred cCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 252 SNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 252 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
++|.+. .+|..++..+++|+.|++++|.++ .+|..++
T Consensus 681 s~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 717 (876)
T 4ecn_A 681 SYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSL 717 (876)
T ss_dssp CSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSS
T ss_pred cCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHh
Confidence 888887 677777666778888888888887 7777654
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=206.08 Aligned_cols=93 Identities=27% Similarity=0.324 Sum_probs=43.0
Q ss_pred CCCccEEEcCCCcccCCccccccCCCCCceEEccCccccC--CCCccccCCCCCCEEEccCCcccccCchHHHhhCcccc
Q 035904 195 LTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTG--TIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQ 272 (291)
Q Consensus 195 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~ 272 (291)
+++|++|++++|.+++..|..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+.+|...+..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 3444444444444444444444444555555555554443 22233444455555555555554334433333344555
Q ss_pred EEEeecceeeeeCCC
Q 035904 273 RFYMTNNHFTGSIPH 287 (291)
Q Consensus 273 ~L~l~~n~l~~~ip~ 287 (291)
.|++++|.+++.+|.
T Consensus 403 ~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 403 SLNMSSNILTDTIFR 417 (520)
T ss_dssp EEECCSSCCCGGGGG
T ss_pred EEECcCCCCCcchhh
Confidence 555555555444443
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=5.6e-26 Score=206.38 Aligned_cols=108 Identities=29% Similarity=0.377 Sum_probs=89.8
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.+++++|++++|.+++..+..+.++++|++|++++|++++..|..|.++++|++|++++|.+. .+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEE
Confidence 358999999999999888888999999999999999999777888999999999999999987 67764 78889999
Q ss_pred EccCCccccccC-hhhhccccCccEEEccccccc
Q 035904 129 DCNYNSLSGELP-ANIFSYLPFLKSLALSANNFH 161 (291)
Q Consensus 129 ~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 161 (291)
++++|.+. .++ +..+..+++|++|++++|.+.
T Consensus 127 ~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 127 DLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ECCCCCcc-ccCchHhhcccCcccEEecCCCccc
Confidence 99998887 433 244557888888888887765
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=7.4e-26 Score=192.41 Aligned_cols=226 Identities=22% Similarity=0.325 Sum_probs=192.5
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEEC
Confidence 5789999999887 556544 479999999999999777788999999999999999998 444444589999999999
Q ss_pred cCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcC--ccCccCCCCCCccEEEcCCCcc
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG--AIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++|.+. .++..++ ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999998 7777654 799999999999987666778999999999999999863 556777777 999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
++ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++ .+|..
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC-BCCTT
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe-ecChh
Confidence 84 555443 789999999999998877889999999999999999996555444 45999999999999999 89987
Q ss_pred CC
Q 035904 289 LW 290 (291)
Q Consensus 289 ~~ 290 (291)
+.
T Consensus 260 l~ 261 (332)
T 2ft3_A 260 LP 261 (332)
T ss_dssp GG
T ss_pred hh
Confidence 64
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=3.7e-26 Score=209.33 Aligned_cols=227 Identities=21% Similarity=0.187 Sum_probs=98.2
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCC--CchhhhhcCCCccEE
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS--FPSFIISNMSSIRAI 128 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L 128 (291)
++++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+.+. ++.. +..+++|++|
T Consensus 308 ~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~L~~L 381 (606)
T 3vq2_A 308 KWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYS-DLGTNSLRHL 381 (606)
T ss_dssp CCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHH-HHCCSCCCEE
T ss_pred cCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhh-hccCCcccEe
Confidence 455555555555 33442 2 4444444444444222111 233444444444444444321 1222 2444445555
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCc-cccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNK 207 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 207 (291)
++++|.+. .++. .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 382 ~L~~n~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 382 DLSFNGAI-IMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp ECCSCSEE-EECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccc-cchh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 55444443 2331 12244444444444444443332 234444444444444444444344444444444444444444
Q ss_pred ccC-CccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 208 LQG-EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 208 ~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
+++ ..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|+.|++++|+++ .+|
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~-~~p 537 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIE-TSK 537 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCCC-CEE
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcCc-ccC
Confidence 443 13444444444444444444444444444444444444444444444333332222 444444444444444 344
Q ss_pred C
Q 035904 287 H 287 (291)
Q Consensus 287 ~ 287 (291)
.
T Consensus 538 ~ 538 (606)
T 3vq2_A 538 G 538 (606)
T ss_dssp S
T ss_pred H
Confidence 3
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.9e-26 Score=204.31 Aligned_cols=117 Identities=26% Similarity=0.320 Sum_probs=73.3
Q ss_pred ccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccC--CccccccCCCCCceEEccCccccCCCCc-cccCCCC
Q 035904 169 SNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG--EIPQDLGNLAELEWLSLPQSFLTGTIPS-SIFNLTS 245 (291)
Q Consensus 169 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~ 245 (291)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|.+.+.++. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345566666666666665556666667777777777777664 3445566667777777777776653333 3556667
Q ss_pred CCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 246 LLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 246 L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
|++|++++|.+++..+..+ .++|+.|++++|.++ .+|..+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~ 440 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQV 440 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCGGG
T ss_pred CCEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccchhh
Confidence 7777777776665444322 146777777777776 666654
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2.9e-25 Score=206.05 Aligned_cols=159 Identities=25% Similarity=0.304 Sum_probs=75.0
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCc----------------------------cccccCccccCCCCcc
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQ----------------------------FSGTIPSSIFSISTLK 101 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------------------~~~~~~~~l~~l~~L~ 101 (291)
.++++|++++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 456666666666666555556666666655555443 2222334444555555
Q ss_pred EEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEccccccc--ccCccccccCCCCcEEEc
Q 035904 102 ILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFH--GQIPSTLSNCKQLQMLSL 179 (291)
Q Consensus 102 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l 179 (291)
.|++++|.+.+.++...+..+++|++|++++|.+. .++...+..+++|++|++.+|.+. ...|..+..+++|++|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 55555555544444333455555555555555544 222222223333444444333332 123333444444444444
Q ss_pred ccCcCcCccCccCCCCCCccEEEcCCCccc
Q 035904 180 SINDFTGAIPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
++|.+.+..+..+..+++|+.|++++|.++
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 444444333334444444444444444443
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=196.88 Aligned_cols=230 Identities=24% Similarity=0.278 Sum_probs=191.4
Q ss_pred EEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC
Q 035904 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133 (291)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 133 (291)
..+.+++.++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCC
Confidence 3788888887 4555443 58999999999999666668999999999999999998 555555589999999999999
Q ss_pred ccccccChhhhccccCccEEEcccccccccCc-cccccCCCCcEEEcccCc-CcCccCccCCCCCCccEEEcCCCcccCC
Q 035904 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSIND-FTGAIPKEIGNLTKLTELYLGYNKLQGE 211 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 211 (291)
.++ .++...+..+++|++|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|.+++.
T Consensus 111 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred cCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 998 7888777799999999999999985433 478899999999999994 6655677899999999999999999877
Q ss_pred ccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccC-------------------------------
Q 035904 212 IPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSF------------------------------- 260 (291)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~------------------------------- 260 (291)
.+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 7889999999999999999986443333446889999999999988532
Q ss_pred chHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 261 RDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 261 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
|.. +..+++|+.|++++|.++ .+|..+|
T Consensus 270 ~~~-l~~l~~L~~L~Ls~N~l~-~i~~~~~ 297 (353)
T 2z80_A 270 MKL-LNQISGLLELEFSRNQLK-SVPDGIF 297 (353)
T ss_dssp HHH-HHTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred HHH-HhcccCCCEEECCCCCCC-ccCHHHH
Confidence 222 344899999999999999 8998764
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=1.1e-25 Score=186.15 Aligned_cols=206 Identities=23% Similarity=0.299 Sum_probs=131.7
Q ss_pred cCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCc
Q 035904 71 GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFL 150 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 150 (291)
..+++|+.|++.++.+. .+ ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+. .++...+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 44566666666666555 22 23555666666666666665 232 2356666666666666665 4444445566667
Q ss_pred cEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 151 KSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 151 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 77777666666555555666677777777777766555555666777777777777776555555666777777777777
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
.+.+..+..+..+++|+.|++++|++.+. +++|+.|+++.|.++|.+|.+++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCccc
Confidence 77766565666777777777777766532 55667777777777777776654
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7.1e-25 Score=181.01 Aligned_cols=205 Identities=29% Similarity=0.362 Sum_probs=179.8
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEE
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSL 153 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 153 (291)
.+.+.+++++++++ .+|..+. ++++.|++++|++. .++...+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L 90 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETL 90 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEE
Confidence 35789999999998 5666553 68999999999998 667666689999999999999998 8888888889999999
Q ss_pred EcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcccc
Q 035904 154 ALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 154 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 99999998766777889999999999999999777788999999999999999998766667889999999999999999
Q ss_pred CCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeee
Q 035904 234 GTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGS 284 (291)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 284 (291)
...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred EeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCeeCC
Confidence 777777889999999999999998 45555555699999999999998643
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.6e-25 Score=185.46 Aligned_cols=206 Identities=25% Similarity=0.238 Sum_probs=121.5
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
.+++|++++|.+++..+..+.++++|++|++++|++....+..+..+++|++|++++|.+. .++...+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence 4666666666666555556666666666666666666444555666666666666666665 333333466666666666
Q ss_pred cCCccccccChhhhccccCccEEEccccccccc-CccccccCCCCcEEEcccCcCcCccCccCCCCCCcc----EEEcCC
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQ-IPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLT----ELYLGY 205 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 205 (291)
++|.+. .++...+..+++|++|++++|.+... +|..+..+++|++|++++|.+.+..+..+..+++++ .|++++
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 666665 33333344566666666666666542 355666666666666666666544444454444444 566666
Q ss_pred CcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccccc
Q 035904 206 NKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGS 259 (291)
Q Consensus 206 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 259 (291)
|.+++..+..+ ...+|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 66653333222 233566666666666654444555666666666666666543
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=9.2e-26 Score=206.68 Aligned_cols=232 Identities=23% Similarity=0.175 Sum_probs=202.8
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccc--cCccccCCCCccEEEeecccCcCCCchhhhhcCCCcc
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGT--IPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIR 126 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 126 (291)
.+++++|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+. .+|.. +..+++|+
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~-~~~l~~L~ 402 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN-FMGLEELQ 402 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCC-CTTCTTCC
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhh-ccCCCCCC
Confidence 568999999999655444 577999999999999999854 3788899999999999999987 56643 48899999
Q ss_pred EEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcC-ccCccCCCCCCccEEEcCC
Q 035904 127 AIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTG-AIPKEIGNLTKLTELYLGY 205 (291)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 205 (291)
+|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 999999999865554667789999999999999988888889999999999999999986 3688899999999999999
Q ss_pred CcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCc-cccEEEeecceeeee
Q 035904 206 NKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIP-LLQRFYMTNNHFTGS 284 (291)
Q Consensus 206 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-~L~~L~l~~n~l~~~ 284 (291)
|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.. ++ +|+.|++++|++.+.
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~-l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH-FPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG-SCTTCCEEECCSCCCCCS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh-hcccCcEEEccCCCcccC
Confidence 9999878888999999999999999999888899999999999999999998 67766544 76 699999999999865
Q ss_pred CC
Q 035904 285 IP 286 (291)
Q Consensus 285 ip 286 (291)
.|
T Consensus 561 c~ 562 (606)
T 3vq2_A 561 CE 562 (606)
T ss_dssp ST
T ss_pred Cc
Confidence 44
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.2e-26 Score=195.65 Aligned_cols=223 Identities=21% Similarity=0.291 Sum_probs=170.4
Q ss_pred eEEEEecCcccc-ccCccccc-------CCCCCCEEeCCCCccccccCccc--cCCCCccEEEeecccCcCCCchhhhhc
Q 035904 52 VTALNISYFGLT-GTISSQVG-------NLSSLQTLDLSHNQFSGTIPSSI--FSISTLKILILGDNQLSGSFPSFIISN 121 (291)
Q Consensus 52 l~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~ 121 (291)
++.|+++++.+. ..++..+. ++++|++|++++|++++..|..+ ..+++|++|++++|.+.+. |..+ ..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWL-AE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHH-HH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHH-HH
Confidence 555666666663 34454444 68899999999999988888876 7899999999999998844 5443 55
Q ss_pred C-----CCccEEEccCCccccccChhhhccccCccEEEccccccccc--Ccccc--ccCCCCcEEEcccCcCcCc---cC
Q 035904 122 M-----SSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQ--IPSTL--SNCKQLQMLSLSINDFTGA---IP 189 (291)
Q Consensus 122 l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~~---~~ 189 (291)
+ ++|++|++++|.+. .++...+..+++|++|++++|.+... .+..+ ..+++|++|++++|.+... ..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCC-CCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCc-cchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 5 89999999999998 55555566889999999999986532 23333 7888999999999988732 22
Q ss_pred ccCCCCCCccEEEcCCCcccCCcc-ccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhC
Q 035904 190 KEIGNLTKLTELYLGYNKLQGEIP-QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRI 268 (291)
Q Consensus 190 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 268 (291)
..+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~--~~~l 295 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS--PDEL 295 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC--TTTS
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh--HhhC
Confidence 344577899999999999987664 45566789999999999988 5566555 7899999999999854 54 4458
Q ss_pred ccccEEEeecceeee
Q 035904 269 PLLQRFYMTNNHFTG 283 (291)
Q Consensus 269 ~~L~~L~l~~n~l~~ 283 (291)
++|+.|++++|++++
T Consensus 296 ~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEEEEECTTCTTTC
T ss_pred CCCCEEeccCCCCCC
Confidence 999999999998874
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=205.70 Aligned_cols=221 Identities=22% Similarity=0.216 Sum_probs=184.7
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
++|++|++++|.+++..|..+..+++|++|+|++|.+++..+ +..+++|++|++++|.+. .++. .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEEE
Confidence 489999999999998888899999999999999999986554 899999999999999987 4442 48999999
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCC-CCCCccEEEcCCCcc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIG-NLTKLTELYLGYNKL 208 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 208 (291)
+++|.+.+. +.. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.+
T Consensus 106 L~~N~l~~~-~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRV-SCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCE-EEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCC-Ccc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999843 332 468899999999999877788888999999999999999877777665 789999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee-eeCCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT-GSIPH 287 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~-~~ip~ 287 (291)
++. + ....+++|+.|++++|.+++. +..+..+++|+.|++++|.+++ +|..+. .+++|+.|++++|+++ +.+|.
T Consensus 182 ~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~-~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 182 YDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALR-FSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCC-CCTTCCEEECTTCCBCHHHHHH
T ss_pred ccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhc-cCCCCCEEEcCCCCCcCcchHH
Confidence 854 3 234588999999999999854 4458889999999999999984 565543 4889999999999887 44443
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7e-25 Score=201.46 Aligned_cols=107 Identities=26% Similarity=0.248 Sum_probs=78.8
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
..+++|++++|.+++..+..|.++++|++|+|++|++++..+.+|.++++|++|++++|++. .+|...|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 47899999999998777778889999999999999888666677888888888888888887 66666667777777777
Q ss_pred ccCCccccccChhhhccccCccEEEcccc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSAN 158 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 158 (291)
+++|.++ .++...+..+++|++|++++|
T Consensus 131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N 158 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLKTLKELNVAHN 158 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSS
T ss_pred CCCCcCC-CCChhhhhcCcccCeeccccC
Confidence 7777665 344333334444444444443
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=210.18 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCcccccc-CccccCCCCccEEEeecccCcCCCchhhhhcCCCccE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTI-PSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 127 (291)
.+++++|++++|.+++..+..+.++++|++|++++|...+.+ +..|.++++|++|++++|.+.+..|.. +.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA-FQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS-SCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH-ccCCcccCE
Confidence 456666666666666555555555666666666555433333 445555555555555555555222222 355555555
Q ss_pred EEccCCccccccCh-hhhccccCccEEEcccccccccCc-cccccCCCCcEEEcccCcCc
Q 035904 128 IDCNYNSLSGELPA-NIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDFT 185 (291)
Q Consensus 128 L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 185 (291)
|++++|.+.+.++. ..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 55555555433322 223345555555555555543322 33455555555555555443
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.9e-25 Score=201.72 Aligned_cols=229 Identities=21% Similarity=0.233 Sum_probs=155.6
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCc-hhhhhcCCCccE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFP-SFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~ 127 (291)
..+|++|++++|.+++..|..|..+++|++|++++|+++ .+|.. .+++|++|++++|.+. .++ +..+.++++|++
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~-~l~~p~~~~~l~~L~~ 150 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTF 150 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS-BCCCCGGGGGCTTCCE
T ss_pred CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc-ccCchHhhcccCcccE
Confidence 468999999999999888888999999999999999988 56665 7899999999999887 433 234488888888
Q ss_pred EEccCCccccccChhhhcccc-----------------------------------------------------------
Q 035904 128 IDCNYNSLSGELPANIFSYLP----------------------------------------------------------- 148 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~----------------------------------------------------------- 148 (291)
|++++|.+.+. . +..++
T Consensus 151 L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 226 (562)
T 3a79_B 151 LGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226 (562)
T ss_dssp EEEECSBCCTT-T---TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEE
T ss_pred EecCCCccccC-c---hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEe
Confidence 88888877521 1 11222
Q ss_pred --------------------------------------------------CccEEEcccccccccCcccc----------
Q 035904 149 --------------------------------------------------FLKSLALSANNFHGQIPSTL---------- 168 (291)
Q Consensus 149 --------------------------------------------------~L~~L~l~~~~~~~~~~~~l---------- 168 (291)
+|++|++++|.+.+..|..+
T Consensus 227 ~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~ 306 (562)
T 3a79_B 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306 (562)
T ss_dssp EEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred cccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence 33444444444332222221
Q ss_pred -------------------------------------------ccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCC
Q 035904 169 -------------------------------------------SNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGY 205 (291)
Q Consensus 169 -------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 205 (291)
..+++|++|++++|.+.+..|..+..+++|+.|++++
T Consensus 307 L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 386 (562)
T 3a79_B 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386 (562)
T ss_dssp EEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred eehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence 3455666777777766655666666777777777777
Q ss_pred CcccCC--ccccccCCCCCceEEccCccccCCCC-ccccCCCCCCEEEccCCcccccCchHHHhhC-ccccEEEeeccee
Q 035904 206 NKLQGE--IPQDLGNLAELEWLSLPQSFLTGTIP-SSIFNLTSLLELDFSNNSLTGSFRDDLCQRI-PLLQRFYMTNNHF 281 (291)
Q Consensus 206 ~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~~L~~L~l~~n~l 281 (291)
|.+++. .|..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..+.. + ++|+.|++++|.+
T Consensus 387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~~L~~L~L~~N~l 462 (562)
T 3a79_B 387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC----LPPKVKVLDLHNNRI 462 (562)
T ss_dssp SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS----CCTTCSEEECCSSCC
T ss_pred CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh----hcCcCCEEECCCCcC
Confidence 776642 23456666777777777777765233 34556677777777777776544432 3 5788888888888
Q ss_pred eeeCCCCCC
Q 035904 282 TGSIPHNLW 290 (291)
Q Consensus 282 ~~~ip~~~~ 290 (291)
+ .||..++
T Consensus 463 ~-~ip~~~~ 470 (562)
T 3a79_B 463 M-SIPKDVT 470 (562)
T ss_dssp C-CCCTTTT
T ss_pred c-ccChhhc
Confidence 7 7887665
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-26 Score=195.40 Aligned_cols=217 Identities=22% Similarity=0.218 Sum_probs=152.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ ..++|++|
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L 104 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETL 104 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEE
Confidence 3478899999998888777788889999999999988875443 888888999999888876 333 23677777
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccC-CCCCCccEEEcCCCc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEI-GNLTKLTELYLGYNK 207 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~ 207 (291)
++++|.+. .++.. .+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.
T Consensus 105 ~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 77777776 33322 35677777777777776555566677777777777777765545444 356777777777777
Q ss_pred ccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 208 LQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 208 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
+++. +. ...+++|++|++++|.+.+ ++..+..+++|++|++++|.+. .+|..+. .+++|+.|++++|+++
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~-~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR-FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC-CCTTCCEEECTTCCCB
T ss_pred Cccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh-cCCCCCEEEccCCCcc
Confidence 7633 22 2346777777777777763 3344666777777777777776 4454433 3677777777777776
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.9e-27 Score=199.37 Aligned_cols=246 Identities=19% Similarity=0.169 Sum_probs=194.4
Q ss_pred ccCCCCccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccc-cccCcccc-------CCCCccE
Q 035904 31 WTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFS-GTIPSSIF-------SISTLKI 102 (291)
Q Consensus 31 w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~ 102 (291)
|.....++.+..+.......+++.|+++++.+ .+|..+... |+.|++++|.+. ..++..+. .+++|++
T Consensus 24 ~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~ 99 (312)
T 1wwl_A 24 WSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99 (312)
T ss_dssp GGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCE
T ss_pred hHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccE
Confidence 76655555554443332256788999999988 666655444 899999999885 45566555 7999999
Q ss_pred EEeecccCcCCCchhhh-hcCCCccEEEccCCccccccChhhhccc-----cCccEEEcccccccccCccccccCCCCcE
Q 035904 103 LILGDNQLSGSFPSFII-SNMSSIRAIDCNYNSLSGELPANIFSYL-----PFLKSLALSANNFHGQIPSTLSNCKQLQM 176 (291)
Q Consensus 103 L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 176 (291)
|++++|++.+.+|..++ ..+++|++|++++|.+.+. +.. +..+ ++|++|++++|.+....+..+..+++|++
T Consensus 100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 99999999988887654 7899999999999999844 543 3355 89999999999999777789999999999
Q ss_pred EEcccCcCcCc--cCccC--CCCCCccEEEcCCCcccCC--cc-ccccCCCCCceEEccCccccCCCC-ccccCCCCCCE
Q 035904 177 LSLSINDFTGA--IPKEI--GNLTKLTELYLGYNKLQGE--IP-QDLGNLAELEWLSLPQSFLTGTIP-SSIFNLTSLLE 248 (291)
Q Consensus 177 L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~--~~-~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~ 248 (291)
|++++|.+.+. .+..+ ..+++|++|++++|.+++. .+ ..+..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 99999997643 23333 7899999999999999831 22 344577999999999999987664 45566899999
Q ss_pred EEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 249 LDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 249 L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
|++++|.++ .+|..+. ++|+.|++++|+++ .+|.
T Consensus 258 L~Ls~N~l~-~ip~~~~---~~L~~L~Ls~N~l~-~~p~ 291 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP---AKLSVLDLSYNRLD-RNPS 291 (312)
T ss_dssp EECTTSCCS-SCCSSCC---SEEEEEECCSSCCC-SCCC
T ss_pred EECCCCccC-hhhhhcc---CCceEEECCCCCCC-CChh
Confidence 999999998 6776543 79999999999999 4676
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=5.6e-25 Score=208.53 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=60.0
Q ss_pred CCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEcc
Q 035904 173 QLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFS 252 (291)
Q Consensus 173 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 252 (291)
+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 34444444444443444455555556666666665554445555556666666666666655555555566666666666
Q ss_pred CCcccccCchHHHhhCccccEEEeecceee
Q 035904 253 NNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 253 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
+|.+.+..+ ..+..+++|+.|++++|.++
T Consensus 347 ~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 347 KNHIAIIQD-QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp SCCCCCCCS-SCSCSCCCCCEEEEETCCSC
T ss_pred CCCCCccCh-hhhcCCCCCCEEECCCCCCC
Confidence 666553222 22233566666666666655
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=200.52 Aligned_cols=232 Identities=22% Similarity=0.303 Sum_probs=175.0
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCcc--------------------ccCCCCccEEEeeccc
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSS--------------------IFSISTLKILILGDNQ 109 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------------l~~l~~L~~L~l~~~~ 109 (291)
.+++.|+++++.+. .+|..+..+ +|++|++++|.+. .+|.. ...+++|+.|++++|.
T Consensus 282 ~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 282 TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 46777777777665 355555555 6666666655554 22221 1456777778887777
Q ss_pred CcCCC--chhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCc-cccccCCCCcEEEcccCcCcC
Q 035904 110 LSGSF--PSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDFTG 186 (291)
Q Consensus 110 ~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~ 186 (291)
+.+.. +.. +..+++|++|++++|.+. .++.. +..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+
T Consensus 359 l~~~~~~~~~-~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 359 LSFKGCCSQS-DFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp CBEEEEEEHH-HHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred cCcccccccc-ccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 76322 333 477888888888888877 44444 5578889999998888775544 467788999999999999887
Q ss_pred ccCccCCCCCCccEEEcCCCccc-CCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHH
Q 035904 187 AIPKEIGNLTKLTELYLGYNKLQ-GEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLC 265 (291)
Q Consensus 187 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~ 265 (291)
..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+. .+
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~ 514 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IF 514 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH-Hh
Confidence 77888888999999999999887 46788888999999999999999877788888999999999999999865444 44
Q ss_pred hhCccccEEEeecceeeeeCCCC
Q 035904 266 QRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 266 ~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
..+++|+.|++++|++++..|..
T Consensus 515 ~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCTTCCEEECCSSCBCCCTTTT
T ss_pred hcccCCcEEEecCCcccCCCcch
Confidence 45899999999999999887753
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.9e-25 Score=181.63 Aligned_cols=222 Identities=25% Similarity=0.299 Sum_probs=183.3
Q ss_pred cCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCcccc
Q 035904 58 SYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSG 137 (291)
Q Consensus 58 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 137 (291)
.+.+++ .+|..+ -++|++|++++|++++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus 15 ~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~- 89 (276)
T 2z62_A 15 MELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89 (276)
T ss_dssp TTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-
T ss_pred cCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccC-
Confidence 333443 345433 257999999999999766678999999999999999998 666655689999999999999998
Q ss_pred ccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCc-cCccCCCCCCccEEEcCCCcccCCccccc
Q 035904 138 ELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA-IPKEIGNLTKLTELYLGYNKLQGEIPQDL 216 (291)
Q Consensus 138 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 216 (291)
.++...+..+++|++|++.+|.+....+..+..+++|++|++++|.+... +|..+..+++|+.|++++|.+++..+..+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 66666677999999999999999876666789999999999999999864 58889999999999999999987666677
Q ss_pred cCCCCCc----eEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 217 GNLAELE----WLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 217 ~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
..+.+|+ .|++++|.+.+..+..+ ...+|++|++++|.++ .++...+..+++|+.|++++|++++..|
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence 7666666 89999999985554444 4458999999999998 5555565669999999999999987665
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2.8e-24 Score=179.12 Aligned_cols=201 Identities=23% Similarity=0.216 Sum_probs=162.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..++++++++++.++. +|..+ .++++.|++++|.+++..+..|..+++|+.|++++|.++ .++.. ..+++|++|
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEE
Confidence 5678889999988874 44434 368899999999988777788889999999999999887 44443 678889999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++.. +..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+
T Consensus 83 ~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCC-cCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99999887 66654 34788899999999988866667788888999999999988866667778888999999999988
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
+...+..+..+++|++|++++|.+. .+|..+...+.|+.+++++|++..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 8655566778888999999999887 566667777889999999888763
No 58
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.4e-24 Score=181.06 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=146.8
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|++++|.+++. +.+..+++|++|++++|.+.. ++. +..+++|+.|++++|.....++. +..+++|++|
T Consensus 87 l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L 160 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYL 160 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEE
T ss_pred CCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEE
Confidence 46788888888887753 357888888888888888773 333 66677777777776644423332 2455555555
Q ss_pred EccCCccccccChhhhccccCccEEEcc----------------------cccccccCccccccCCCCcEEEcccCcCcC
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALS----------------------ANNFHGQIPSTLSNCKQLQMLSLSINDFTG 186 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~----------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 186 (291)
++++|.+. .++. +..+++|++|+++ +|.+.... .+..+++|++|++++|.+.+
T Consensus 161 ~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 161 TVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp ECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC
T ss_pred EecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc--hhhcCCcCCEEEccCCccCC
Confidence 55555544 2221 2244444444444 44443221 15667777888888877764
Q ss_pred ccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHh
Q 035904 187 AIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQ 266 (291)
Q Consensus 187 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~ 266 (291)
..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..
T Consensus 236 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 236 LSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred Ccc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 433 67778888888888877743 4577788888888888888754 45677888999999999888655554444
Q ss_pred hCccccEEEeecceeeeeCC
Q 035904 267 RIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 267 ~~~~L~~L~l~~n~l~~~ip 286 (291)
+++|+.|++++|++++..|
T Consensus 310 -l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 310 -LTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp -CTTCSEEECCSSSCCCCGG
T ss_pred -cccCCEEEccCCccccccC
Confidence 8899999999998885433
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=187.97 Aligned_cols=225 Identities=22% Similarity=0.239 Sum_probs=188.0
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+++.++++.+.+.......+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 9 g~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L 85 (317)
T 3o53_A 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTL 85 (317)
T ss_dssp TTEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred cCceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence 4567778888888876666777788999999999999997777899999999999999999984444 5899999999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++ ..++|++|++++|.+....+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 86 ~Ls~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 86 DLNNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp ECCSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred ECcCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence 99999987 443 348999999999998855433 468899999999999977777888999999999999999
Q ss_pred cCCccccc-cCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 209 QGEIPQDL-GNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 209 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
++..+..+ ..+++|++|++++|.+.+.. ....+++|++|++++|.+.+ ++..+. .+++|+.|++++|.++ .+|.
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~-~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQ-SAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGG-GGTTCSEEECTTSCCC-EECT
T ss_pred CcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-chhhhc-ccCcccEEECcCCccc-chhh
Confidence 87666666 46899999999999998552 23358999999999999995 444444 4899999999999999 7887
Q ss_pred CCC
Q 035904 288 NLW 290 (291)
Q Consensus 288 ~~~ 290 (291)
.+.
T Consensus 232 ~~~ 234 (317)
T 3o53_A 232 ALR 234 (317)
T ss_dssp TCC
T ss_pred Hhh
Confidence 653
No 60
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.6e-24 Score=181.38 Aligned_cols=217 Identities=20% Similarity=0.279 Sum_probs=154.8
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcC----------------
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSG---------------- 112 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---------------- 112 (291)
.++|++|++++|.+.+..+ +..+++|++|++++|..... ...+..+++|++|++++|.+.+
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 185 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLN 185 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECT
T ss_pred CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEcc
Confidence 4567777777777664322 55666666666666643322 2224445555555555444431
Q ss_pred -----CCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCc
Q 035904 113 -----SFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187 (291)
Q Consensus 113 -----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 187 (291)
.++. +..+++|++|++++|.+. ..+. +..+++|++|++++|.+.... . +..+++|++|++++|.+...
T Consensus 186 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~ 258 (347)
T 4fmz_A 186 YNQIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI 258 (347)
T ss_dssp TSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC
T ss_pred CCccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC
Confidence 2222 244555555555555554 2222 557899999999999988543 3 88999999999999999853
Q ss_pred cCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhh
Q 035904 188 IPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQR 267 (291)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~ 267 (291)
+.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+ ...
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~ 331 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LAS 331 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGG
T ss_pred --hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhh
Confidence 4588899999999999999854 457889999999999999988888888899999999999999996555 445
Q ss_pred CccccEEEeecceee
Q 035904 268 IPLLQRFYMTNNHFT 282 (291)
Q Consensus 268 ~~~L~~L~l~~n~l~ 282 (291)
+++|+.|++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999986
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.2e-24 Score=197.79 Aligned_cols=160 Identities=25% Similarity=0.267 Sum_probs=122.1
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
...+++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+. .++...+.++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 346888888888888777778888888888888888888666777888888888888888887 5554555888888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccc-cCccccccCCCCcEEEcccCcCcCccCccCCCCCCc----cEEEc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHG-QIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKL----TELYL 203 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l 203 (291)
++++|.+. .++...+..+++|++|++++|.+.. ..|..+.++++|++|++++|.+.+..+..+..+.+| +.+++
T Consensus 106 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 88888887 5554445678888888888888775 357778888888888888888776555556555555 56666
Q ss_pred CCCcccC
Q 035904 204 GYNKLQG 210 (291)
Q Consensus 204 ~~~~~~~ 210 (291)
++|.+++
T Consensus 185 ~~n~l~~ 191 (570)
T 2z63_A 185 SLNPMNF 191 (570)
T ss_dssp TTCCCCE
T ss_pred CCCCcee
Confidence 6665553
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=5.9e-25 Score=199.00 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=86.8
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCC-CchhhhhcCCCccE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS-FPSFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~ 127 (291)
..+|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+. .+..+++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccE
Confidence 45788888888888877777788888888888888888866666688888888888888887632 233 3477788888
Q ss_pred EEccCCccccccChhhhccccCccEEEcccccccccCccccc
Q 035904 128 IDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLS 169 (291)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 169 (291)
|++++|.+.+.++...+..+++|++|++++|.+....+..+.
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 888877744466655556777777777777776654444433
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=4.1e-25 Score=187.99 Aligned_cols=235 Identities=17% Similarity=0.158 Sum_probs=188.1
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccc-cCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGT-IPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
.+++.|+++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence 6789999999998877666 55799999999999998855 77888999999999999999875555554 779999999
Q ss_pred EccCC-ccccccChhhhccccCccEEEcccc-ccccc-CccccccCC-CCcEEEcccCc--Cc-CccCccCCCCCCccEE
Q 035904 129 DCNYN-SLSGELPANIFSYLPFLKSLALSAN-NFHGQ-IPSTLSNCK-QLQMLSLSIND--FT-GAIPKEIGNLTKLTEL 201 (291)
Q Consensus 129 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L 201 (291)
++++| .+++......+..+++|++|++++| .++.. .+..+..++ +|++|++++|. ++ ..++..+..+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99999 6764434455668999999999999 87743 466688899 99999999994 44 3456667789999999
Q ss_pred EcCCCc-ccCCccccccCCCCCceEEccCcc-ccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecc
Q 035904 202 YLGYNK-LQGEIPQDLGNLAELEWLSLPQSF-LTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN 279 (291)
Q Consensus 202 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n 279 (291)
++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++......+.. +++.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~---~l~~L~l~~n 303 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE---ALPHLQINCS 303 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH---HSTTSEESCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh---hCcceEEecc
Confidence 999998 776777788899999999999995 43333345778999999999999 65444443333 4666779999
Q ss_pred eeeeeCCCCCC
Q 035904 280 HFTGSIPHNLW 290 (291)
Q Consensus 280 ~l~~~ip~~~~ 290 (291)
.+++.+|..+.
T Consensus 304 ~l~~~~~~~~~ 314 (336)
T 2ast_B 304 HFTTIARPTIG 314 (336)
T ss_dssp CSCCTTCSSCS
T ss_pred cCccccCCccc
Confidence 99998887654
No 64
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=3.3e-23 Score=183.98 Aligned_cols=218 Identities=26% Similarity=0.360 Sum_probs=168.8
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|
T Consensus 176 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L 248 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDL 248 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred CCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEE
Confidence 35677888888877643 236778888888888887774433 667788888888888876 4432 4778888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+.+ .+. +..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 249 ~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l 321 (466)
T 1o6v_A 249 DLANNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321 (466)
T ss_dssp ECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCC
T ss_pred ECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcC
Confidence 888888873 333 5578888999998888874332 7788899999999998875443 67888999999999998
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHN 288 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~ 288 (291)
++..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| ...+++|+.|++++|++++ +|..
T Consensus 322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccC-Cchh
Confidence 86655 67889999999999988754 467889999999999999987666 3458999999999999984 5544
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.9e-24 Score=176.15 Aligned_cols=205 Identities=21% Similarity=0.286 Sum_probs=178.7
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+++.|+++++.++.. ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEE
Confidence 46799999999988742 348889999999999999985 3 47889999999999999998 6666666899999999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 115 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 99999998 67777677899999999999999876666788999999999999999977777789999999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHh
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQ 266 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~ 266 (291)
++..+..+..+++|+.|++++|.+. ..++.++.++++.|.+.+.+|..+..
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 9877777899999999999999876 34668999999999999888876544
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.6e-23 Score=173.31 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=128.8
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
+.++++++++++++++++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.++ .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 456666777777766666 4444432 46667777777665 444444466677777777777666 33332 35666
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccC
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQ 229 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 229 (291)
|++|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 777777777666 4455566666777777777776655556666677777777777776655555566666777777777
Q ss_pred ccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 230 SFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 230 ~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
|.+....+..+..+++|+.|++++|.+. .+|..++. .++|+.+++++|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc-cccCCeEEeCCCCcc
Confidence 7766554455566667777777777666 55555554 556777777766654
No 67
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=2.1e-25 Score=193.44 Aligned_cols=236 Identities=17% Similarity=0.248 Sum_probs=187.2
Q ss_pred CCceEEEEecCccccccC----cccccCCCCCCEEeCCCCcc---ccccCccc-------cCCCCccEEEeecccCcCC-
Q 035904 49 THRVTALNISYFGLTGTI----SSQVGNLSSLQTLDLSHNQF---SGTIPSSI-------FSISTLKILILGDNQLSGS- 113 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~---~~~~~~~l-------~~l~~L~~L~l~~~~~~~~- 113 (291)
.++|++|++++|.+++.. +..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.+.+.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 457999999999998763 44577899999999999744 34445444 7899999999999999852
Q ss_pred ---CchhhhhcCCCccEEEccCCccccccChhhh---ccc---------cCccEEEcccccccc-cCc---cccccCCCC
Q 035904 114 ---FPSFIISNMSSIRAIDCNYNSLSGELPANIF---SYL---------PFLKSLALSANNFHG-QIP---STLSNCKQL 174 (291)
Q Consensus 114 ---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~---------~~L~~L~l~~~~~~~-~~~---~~l~~~~~L 174 (291)
++.. +..+++|++|++++|.+.+..+..+. ..+ ++|++|++++|.+.. ..+ ..+..+++|
T Consensus 111 ~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 111 QEPLIDF-LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp HHHHHHH-HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHH-HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 4444 48899999999999998743333222 233 899999999999873 233 467788999
Q ss_pred cEEEcccCcCcC-----ccCccCCCCCCccEEEcCCCccc----CCccccccCCCCCceEEccCccccCC----CCcccc
Q 035904 175 QMLSLSINDFTG-----AIPKEIGNLTKLTELYLGYNKLQ----GEIPQDLGNLAELEWLSLPQSFLTGT----IPSSIF 241 (291)
Q Consensus 175 ~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~ 241 (291)
++|++++|.+.. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+.+. ++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 999999999873 23447888999999999999986 45777888999999999999998754 344553
Q ss_pred --CCCCCCEEEccCCcccc----cCchHHHhhCccccEEEeecceeeeeC
Q 035904 242 --NLTSLLELDFSNNSLTG----SFRDDLCQRIPLLQRFYMTNNHFTGSI 285 (291)
Q Consensus 242 --~~~~L~~L~l~~n~i~~----~~~~~~~~~~~~L~~L~l~~n~l~~~i 285 (291)
.+++|++|++++|.+++ .++..+...+++|+.|++++|++++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 38999999999999997 477777666899999999999998544
No 68
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=2.2e-23 Score=170.22 Aligned_cols=191 Identities=20% Similarity=0.292 Sum_probs=148.7
Q ss_pred CccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCc
Q 035904 36 SVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFP 115 (291)
Q Consensus 36 ~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 115 (291)
.++.|.|..|.. ..++++++++.++ .+|..+. +.++.|++++|++.+..+..+..+++|++|++++|.+. .++
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 75 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS 75 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCC
T ss_pred cCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccC
Confidence 466788999953 5678899999887 4554443 68999999999999777788999999999999999988 555
Q ss_pred hhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCC
Q 035904 116 SFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNL 195 (291)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 195 (291)
...+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 555588889999999999888 6666666778888888888888875555556777888888888888876556567777
Q ss_pred CCccEEEcCCCcccCCccccccCCCCCceEEccCccccC
Q 035904 196 TKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTG 234 (291)
Q Consensus 196 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 234 (291)
++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 888888888888776656667777777888887777753
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-24 Score=191.25 Aligned_cols=204 Identities=23% Similarity=0.241 Sum_probs=173.2
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
...+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++ ..++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~l~-----~~~~ 100 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-ELL-----VGPS 100 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-EEE-----ECTT
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCC-CCC-----CCCC
Confidence 3455699999999999998778899999999999999999985554 589999999999999987 444 3489
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCcccccc-CCCCCceEEcc
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLG-NLAELEWLSLP 228 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~ 228 (291)
|++|++++|.+....+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+. .+++|+.|+++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 99999999999855443 468899999999999988788899999999999999999987777775 78999999999
Q ss_pred CccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 229 ~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
+|.+.+..+ ...+++|+.|++++|.+++. +..+. .+++|+.|++++|.++ .+|..+.
T Consensus 178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l~ 234 (487)
T 3oja_A 178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQ-SAAGVTWISLRNNKLV-LIEKALR 234 (487)
T ss_dssp TSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGG-GGTTCSEEECTTSCCC-EECTTCC
T ss_pred CCccccccc--cccCCCCCEEECCCCCCCCC-CHhHc-CCCCccEEEecCCcCc-ccchhhc
Confidence 999985532 33589999999999999964 44444 4899999999999999 5887654
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=179.90 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=47.3
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEE
Confidence 4567777777777765433 6666677777776666663322 566666666666666655 3332 2455555555
Q ss_pred EccCCccc
Q 035904 129 DCNYNSLS 136 (291)
Q Consensus 129 ~l~~~~~~ 136 (291)
++++|.+.
T Consensus 140 ~l~~n~l~ 147 (466)
T 1o6v_A 140 ELSSNTIS 147 (466)
T ss_dssp EEEEEEEC
T ss_pred ECCCCccC
Confidence 55555443
No 71
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2e-22 Score=178.16 Aligned_cols=207 Identities=22% Similarity=0.285 Sum_probs=141.2
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..++++|+++++.+++. | .+..+++|++|++++|++++. + +..+++|++|++++|.+. .++ +..+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCTTCCEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCCcCCEE
Confidence 45688888888877754 4 477788888888888887743 3 777788888888888877 344 3677888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++ +..+++|++|++++|.+... .+..+++|++|++++|...+.+ .+..+++|+.|++++|.+
T Consensus 112 ~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 88888777 343 44777888888888877643 2566777777777777443333 355667777777777777
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeee
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
++ ++ +..+++|+.|++++|.+.+. .+..+++|++|++++|.+.+ +| ...+++|+.|++++|++++
T Consensus 183 ~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 183 TE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC
T ss_pred ce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcCCC
Confidence 64 33 55666777777777776643 25566677777777777764 44 2336677777777777663
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=3.4e-23 Score=167.83 Aligned_cols=196 Identities=19% Similarity=0.233 Sum_probs=156.4
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEeeccc-CcCCCchhhhhcCCCccEEEccC-CccccccChhhhccccCcc
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ-LSGSFPSFIISNMSSIRAIDCNY-NSLSGELPANIFSYLPFLK 151 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~ 151 (291)
++|++|++++|++++..+..|..+++|++|++++|+ +. .++...+..+++|++|++++ |.+. .++...+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence 378888888888886556678888888999998887 65 66666668888899999988 8887 67766677888999
Q ss_pred EEEcccccccccCccccccCCCCc---EEEcccC-cCcCccCccCCCCCCcc-EEEcCCCcccCCccc-cccCCCCCceE
Q 035904 152 SLALSANNFHGQIPSTLSNCKQLQ---MLSLSIN-DFTGAIPKEIGNLTKLT-ELYLGYNKLQGEIPQ-DLGNLAELEWL 225 (291)
Q Consensus 152 ~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~-~~~~~~~L~~L 225 (291)
+|++++|.+.. +|. +..+++|+ +|++++| .+....+..|..+++|+ .|++++|.++ .+|. .+.. ++|+.|
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEE
Confidence 99999888874 454 77777887 9999999 88766666788899999 9999999888 4444 4444 789999
Q ss_pred EccCcc-ccCCCCccccCC-CCCCEEEccCCcccccCchHHHhhCccccEEEeecc
Q 035904 226 SLPQSF-LTGTIPSSIFNL-TSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN 279 (291)
Q Consensus 226 ~l~~~~-~~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n 279 (291)
++++|. +....+..+..+ ++|++|++++|.++ .+|.. .+++|+.|+++++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCc
Confidence 999994 876666778888 89999999999998 45543 3788999998876
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.2e-23 Score=169.00 Aligned_cols=198 Identities=18% Similarity=0.190 Sum_probs=165.5
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCc-cccccCccccCCCCccEEEeec-ccCcCCCchhhhhcCCCcc
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQ-FSGTIPSSIFSISTLKILILGD-NQLSGSFPSFIISNMSSIR 126 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~ 126 (291)
...+++|+++++.+++..+..+..+++|++|++++|+ ++...+..|..+++|++|++++ |.+. .++...+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCC
Confidence 4589999999999998777789999999999999997 8755566889999999999998 8887 67766668999999
Q ss_pred EEEccCCccccccChhhhccccCcc---EEEcccc-cccccCccccccCCCCc-EEEcccCcCcCccCccCCCCCCccEE
Q 035904 127 AIDCNYNSLSGELPANIFSYLPFLK---SLALSAN-NFHGQIPSTLSNCKQLQ-MLSLSINDFTGAIPKEIGNLTKLTEL 201 (291)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 201 (291)
+|++++|.+. .++. +..+++|+ +|++++| .+....+..+..+++|+ +|++++|.+....+..+.. ++|+.|
T Consensus 109 ~L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 109 FLGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEE
T ss_pred EEeCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEE
Confidence 9999999998 5665 55788888 9999999 88866667788999999 9999999998444445555 899999
Q ss_pred EcCCCc-ccCCccccccCC-CCCceEEccCccccCCCCccccCCCCCCEEEccCC
Q 035904 202 YLGYNK-LQGEIPQDLGNL-AELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNN 254 (291)
Q Consensus 202 ~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 254 (291)
++++|. ++...+..+..+ ++|+.|++++|.++...+. .+++|+.|+++++
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 999995 875556778888 9999999999999854333 5678999998876
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1.1e-22 Score=170.90 Aligned_cols=192 Identities=26% Similarity=0.377 Sum_probs=143.7
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|+++++.++. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+. .++. +..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVSA--IAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCEE
Confidence 3478888888888774 33 47788888888888888874 333 888888888888888887 4442 4778888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++. +..+++|++|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 113 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 88888887 4443 5578888888888888774322 7778888888888888874333 77788888888888888
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 74433 667778888888888877544 36777888888888888763
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=175.11 Aligned_cols=225 Identities=19% Similarity=0.196 Sum_probs=177.8
Q ss_pred CceEEEEecCccccccCcc---cccCCCCCCEEeCCCCccccccCccc--cCCCCccEEEeecccCcCCCc---hhhhhc
Q 035904 50 HRVTALNISYFGLTGTISS---QVGNLSSLQTLDLSHNQFSGTIPSSI--FSISTLKILILGDNQLSGSFP---SFIISN 121 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~~~~~ 121 (291)
.+++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4688899998877643111 12245779999999999998888888 889999999999999985444 222357
Q ss_pred CCCccEEEccCCccccccChhhhccccCccEEEccccccccc--C--ccccccCCCCcEEEcccCcCcCccCc----cCC
Q 035904 122 MSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQ--I--PSTLSNCKQLQMLSLSINDFTGAIPK----EIG 193 (291)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~ 193 (291)
+++|++|++++|.+. .++...+..+++|++|++++|.+... . +..+..+++|++|++++|.++. ++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 999999999999997 66666667899999999999986531 1 2234678999999999999973 222 356
Q ss_pred CCCCccEEEcCCCcccCCccccccCC---CCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCcc
Q 035904 194 NLTKLTELYLGYNKLQGEIPQDLGNL---AELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPL 270 (291)
Q Consensus 194 ~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~ 270 (291)
.+++|++|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++. +. ...+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~--~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ--PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC--TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch--hhhCCC
Confidence 78999999999999997767766665 69999999999998 5566554 7999999999999853 33 345899
Q ss_pred ccEEEeecceee
Q 035904 271 LQRFYMTNNHFT 282 (291)
Q Consensus 271 L~~L~l~~n~l~ 282 (291)
|+.|++++|+++
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 999999999987
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=176.38 Aligned_cols=200 Identities=21% Similarity=0.278 Sum_probs=104.5
Q ss_pred ceEEEEecCccccccCcccc--cCCCCCCEEeCCCCccccccC----ccccCCCCccEEEeecccCcCCCchhhhhcCCC
Q 035904 51 RVTALNISYFGLTGTISSQV--GNLSSLQTLDLSHNQFSGTIP----SSIFSISTLKILILGDNQLSGSFPSFIISNMSS 124 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 124 (291)
+|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence 36666666666655555554 556666666666665554322 22334556666666666655 333333355666
Q ss_pred ccEEEccCCccccc--cC-hhhhccccCccEEEcccccccccCcc----ccccCCCCcEEEcccCcCcCccCccCCCC--
Q 035904 125 IRAIDCNYNSLSGE--LP-ANIFSYLPFLKSLALSANNFHGQIPS----TLSNCKQLQMLSLSINDFTGAIPKEIGNL-- 195 (291)
Q Consensus 125 L~~L~l~~~~~~~~--~~-~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 195 (291)
|++|++++|.+.+. ++ ...+..+++|++|++++|.++. .+. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666654321 11 1112345566666666665541 111 13455566666666666654444444443
Q ss_pred -CCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccc
Q 035904 196 -TKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 196 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
++|++|++++|.++ .+|..+. ++|++|++++|.+++. +. +..+++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 45666666666665 3444332 4566666666665532 21 345556666666666554
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.7e-22 Score=162.94 Aligned_cols=181 Identities=24% Similarity=0.295 Sum_probs=158.0
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEE
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSL 153 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 153 (291)
...++++++++.++ .+|..+. +.++.|++++|++. .++...+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTL 88 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEE
Confidence 45788999999988 6676554 68999999999998 555555689999999999999998 5666667789999999
Q ss_pred EcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcccc
Q 035904 154 ALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 154 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 99999999777778899999999999999999777777889999999999999999766668899999999999999999
Q ss_pred CCCCccccCCCCCCEEEccCCccccc
Q 035904 234 GTIPSSIFNLTSLLELDFSNNSLTGS 259 (291)
Q Consensus 234 ~~~~~~l~~~~~L~~L~l~~n~i~~~ 259 (291)
+..+..+..+++|+.|++++|++...
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777888999999999999999865
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=9.2e-22 Score=165.37 Aligned_cols=198 Identities=25% Similarity=0.373 Sum_probs=154.0
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
...+++|++|++++|.+. .++ .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+. .++ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLK-NVS--AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCS-CCG--GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCC-Cch--hhcCCCC
Confidence 446788899999988887 344 5788889999999999887 5555 488889999999999887 443 2557888
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccC
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQ 229 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 229 (291)
|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence 99999999888743 3 37888899999999988875433 7788889999999998875333 77888899999999
Q ss_pred ccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 230 SFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 230 ~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
|.+.+..+ +..+++|++|++++|.+.+..+ + ..+++|+.|++++|+++ ..|.
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l-~~l~~L~~L~l~~N~i~-~~~~ 234 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--L-ANTSNLFIVTLTNQTIT-NQPV 234 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--G-TTCTTCCEEEEEEEEEE-CCCE
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCcccc--c-cCCCCCCEEEccCCeee-cCCe
Confidence 98875433 6788889999999998885442 3 45888999999999887 4554
No 79
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.1e-21 Score=173.55 Aligned_cols=185 Identities=23% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|++|++++|.+++. + +..+++|++|++++|++++. + +..+++|++|++++|++. .++ +..+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEE
Confidence 56899999999998864 3 78899999999999998853 3 788999999999999887 455 4788899999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+++ ++ +..+++|++|++++|...... .+..+++|++|++++|.+.+ +| +..+++|+.|++++|.+
T Consensus 133 ~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 133 NCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp ECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC
T ss_pred ECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC
Confidence 999998874 43 346777888888777433222 35666777777777777764 33 55666777777777766
Q ss_pred cCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
++. .+..+++|+.|++++|.+.+ ++ +..+++|+.|++++|.+.+
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred Cee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 643 25566667777777766664 33 5566666666666666664
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=8.9e-24 Score=179.72 Aligned_cols=232 Identities=21% Similarity=0.288 Sum_probs=185.5
Q ss_pred ccceeEeecCCCceEEEEecCccccccCcccccCC--CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCC-Cc
Q 035904 39 SWIGITCDVSTHRVTALNISYFGLTGTISSQVGNL--SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGS-FP 115 (291)
Q Consensus 39 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~ 115 (291)
.|.++.++ ...++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|+.|++++|.+.+. ++
T Consensus 38 ~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 38 RWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp HHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHH
T ss_pred HHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHH
Confidence 48777764 446889999998876 4556666 8999999999999865554 66899999999999998744 44
Q ss_pred hhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccc-cccc-cCccccccCCCCcEEEcccC-cCcCc-cCcc
Q 035904 116 SFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSAN-NFHG-QIPSTLSNCKQLQMLSLSIN-DFTGA-IPKE 191 (291)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~ 191 (291)
. .+..+++|++|++++|.+++..+..+ ..+++|++|++++| .++. .++..+..+++|++|++++| .+++. ++..
T Consensus 112 ~-~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 112 G-ILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp H-HHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred H-HHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 4 44889999999999999886555554 47999999999999 5664 25666888999999999999 88753 4666
Q ss_pred CCCCC-CccEEEcCCC--ccc-CCccccccCCCCCceEEccCcc-ccCCCCccccCCCCCCEEEccCCc-ccccCchHHH
Q 035904 192 IGNLT-KLTELYLGYN--KLQ-GEIPQDLGNLAELEWLSLPQSF-LTGTIPSSIFNLTSLLELDFSNNS-LTGSFRDDLC 265 (291)
Q Consensus 192 ~~~~~-~L~~L~l~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~~~ 265 (291)
+..++ +|++|++++| .++ ..++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l- 268 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL- 268 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG-
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHH-
Confidence 77889 9999999999 454 3456677789999999999998 666667788899999999999995 433322233
Q ss_pred hhCccccEEEeecc
Q 035904 266 QRIPLLQRFYMTNN 279 (291)
Q Consensus 266 ~~~~~L~~L~l~~n 279 (291)
..+++|+.|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 44999999999998
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.1e-23 Score=178.32 Aligned_cols=236 Identities=19% Similarity=0.194 Sum_probs=176.5
Q ss_pred CCceEEEEecCccccccCc----ccccCCC-CCCEEeCCCCccccccCccccCC-----CCccEEEeecccCcCCCchhh
Q 035904 49 THRVTALNISYFGLTGTIS----SQVGNLS-SLQTLDLSHNQFSGTIPSSIFSI-----STLKILILGDNQLSGSFPSFI 118 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~ 118 (291)
...|++|++++|.+++..+ ..+..++ +|++|++++|++.+..+..+..+ ++|+.|++++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4459999999999988776 7788898 99999999999997767666664 899999999999985544433
Q ss_pred ---hhcC-CCccEEEccCCccccccChhh---hcc-ccCccEEEcccccccccC----ccccccCC-CCcEEEcccCcCc
Q 035904 119 ---ISNM-SSIRAIDCNYNSLSGELPANI---FSY-LPFLKSLALSANNFHGQI----PSTLSNCK-QLQMLSLSINDFT 185 (291)
Q Consensus 119 ---~~~l-~~L~~L~l~~~~~~~~~~~~~---~~~-~~~L~~L~l~~~~~~~~~----~~~l~~~~-~L~~L~l~~~~~~ 185 (291)
+..+ ++|++|++++|.+++..+..+ +.. ..+|++|++++|.+.... +..+...+ +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2344 899999999999984443333 222 359999999999988533 33445555 9999999999997
Q ss_pred CccCc----cCCCC-CCccEEEcCCCcccCC----ccccccC-CCCCceEEccCccccCCCC----ccccCCCCCCEEEc
Q 035904 186 GAIPK----EIGNL-TKLTELYLGYNKLQGE----IPQDLGN-LAELEWLSLPQSFLTGTIP----SSIFNLTSLLELDF 251 (291)
Q Consensus 186 ~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l 251 (291)
+..+. .+..+ ++|+.|++++|.+++. ++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L 260 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL 260 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence 65543 33445 5999999999999853 4445544 4689999999999986544 34467789999999
Q ss_pred cCCcccccCch---HH---HhhCccccEEEeecceeeee
Q 035904 252 SNNSLTGSFRD---DL---CQRIPLLQRFYMTNNHFTGS 284 (291)
Q Consensus 252 ~~n~i~~~~~~---~~---~~~~~~L~~L~l~~n~l~~~ 284 (291)
++|.+.+..+. .+ +..+++|+.|++++|++...
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99985532222 11 12366788999999998754
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=7.2e-22 Score=180.02 Aligned_cols=232 Identities=25% Similarity=0.329 Sum_probs=111.1
Q ss_pred ccCCCCccccceeEe------ecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEE
Q 035904 31 WTSITSVCSWIGITC------DVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILI 104 (291)
Q Consensus 31 w~~~~~~c~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 104 (291)
|....++|.|.+..+ .-....++.|+++++.++ .+|..+. ++|++|++++|+++ .+|. .+++|++|+
T Consensus 15 W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~ 87 (622)
T 3g06_A 15 WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLE 87 (622)
T ss_dssp HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEE
Confidence 777777787754211 100223555566655555 3333332 45555555555554 2333 334455555
Q ss_pred eecccCcCCCchhh----------------hhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCcc--
Q 035904 105 LGDNQLSGSFPSFI----------------ISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPS-- 166 (291)
Q Consensus 105 l~~~~~~~~~~~~~----------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 166 (291)
+++|+++ .+|... ...+++|++|++++|.++ .++. .+++|++|++++|.+.. ++.
T Consensus 88 Ls~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~~~ 160 (622)
T 3g06_A 88 VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPALP 160 (622)
T ss_dssp ECSCCCS-CCCCCCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCCCC
T ss_pred cCCCcCC-cCCCCCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCCC-cCCcc
Confidence 5555444 333200 002344555555555544 3332 23566666666666553 121
Q ss_pred -cccc--------------CCCCcEEEcccCcCcCccCccCCC-----------------CCCccEEEcCCCcccCCccc
Q 035904 167 -TLSN--------------CKQLQMLSLSINDFTGAIPKEIGN-----------------LTKLTELYLGYNKLQGEIPQ 214 (291)
Q Consensus 167 -~l~~--------------~~~L~~L~l~~~~~~~~~~~~~~~-----------------~~~L~~L~l~~~~~~~~~~~ 214 (291)
.+.. +++|+.|++++|.+.+ +|..+.. +++|+.|++++|.+++ +|
T Consensus 161 ~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp- 237 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP- 237 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC-
T ss_pred CCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC-
Confidence 1111 1556666666666553 2211110 1234444444444432 22
Q ss_pred cccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCC
Q 035904 215 DLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPH 287 (291)
Q Consensus 215 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 287 (291)
..+++|+.|++++|.+.. ++. .+++|+.|++++|.++ .+|..+.. +++|+.|++++|++++.+|.
T Consensus 238 --~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~-l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 238 --VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGG-SCTTCEEECCSCCCCHHHHH
T ss_pred --CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhh-ccccCEEEecCCCCCCcCHH
Confidence 223455555555555542 222 3456666666666666 55554433 66777777777776655443
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=8e-23 Score=175.72 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=175.1
Q ss_pred EEEecCccccccCcccccCCCCCCEEeCCCCccccccC----ccccCCC-CccEEEeecccCcCCCchhhhhcC-----C
Q 035904 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIP----SSIFSIS-TLKILILGDNQLSGSFPSFIISNM-----S 123 (291)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-----~ 123 (291)
.+.++.+.+++.+|..+...++|++|++++|.++...+ ..+..++ +|+.|++++|.+.+..+..+ ..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCC
Confidence 36788899998888877777789999999999986655 7788898 89999999999985544443 443 9
Q ss_pred CccEEEccCCccccccChhh---hccc-cCccEEEcccccccccCcccc----cc-CCCCcEEEcccCcCcCcc----Cc
Q 035904 124 SIRAIDCNYNSLSGELPANI---FSYL-PFLKSLALSANNFHGQIPSTL----SN-CKQLQMLSLSINDFTGAI----PK 190 (291)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~~~~~~----~~ 190 (291)
+|++|++++|.+++..+..+ +..+ ++|++|++++|.+....+..+ .. .++|++|++++|.+.+.. +.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999985444433 2234 799999999999986555443 33 369999999999998533 33
Q ss_pred cCCCCC-CccEEEcCCCcccCCccccc----cCC-CCCceEEccCccccCCC----CccccC-CCCCCEEEccCCccccc
Q 035904 191 EIGNLT-KLTELYLGYNKLQGEIPQDL----GNL-AELEWLSLPQSFLTGTI----PSSIFN-LTSLLELDFSNNSLTGS 259 (291)
Q Consensus 191 ~~~~~~-~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~n~i~~~ 259 (291)
.+...+ +|++|++++|.+++..+..+ ... ++|++|++++|.+.+.. +..+.. .++|++|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 444555 99999999999986665433 444 59999999999998643 334444 46999999999999876
Q ss_pred CchH---HHhhCccccEEEeecceee
Q 035904 260 FRDD---LCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 260 ~~~~---~~~~~~~L~~L~l~~n~l~ 282 (291)
.+.. .+..+++|+.|++++|.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred HHHHHHHHHhcCCCccEEEeccCCcc
Confidence 5533 3345689999999999844
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.6e-21 Score=154.63 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=103.2
Q ss_pred CEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcc
Q 035904 77 QTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156 (291)
Q Consensus 77 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (291)
+.++.+++.++ .+|..+ .++|++|++++|++. .++...+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45666666665 344333 346777777777776 555554566777777777777666 5555555566666666666
Q ss_pred cccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCC
Q 035904 157 ANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTI 236 (291)
Q Consensus 157 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 236 (291)
+|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 66666444444556666666666666665444444556666666666666665444444555566666666665443
Q ss_pred CccccCCCCCCEEEccCCcccccCchH
Q 035904 237 PSSIFNLTSLLELDFSNNSLTGSFRDD 263 (291)
Q Consensus 237 ~~~l~~~~~L~~L~l~~n~i~~~~~~~ 263 (291)
..++.|+.|+++.|.+++.+|..
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred ----cCCCCHHHHHHHHHhCCceeecc
Confidence 22345555555555555555543
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=1.9e-23 Score=185.14 Aligned_cols=230 Identities=16% Similarity=0.164 Sum_probs=139.1
Q ss_pred eEEEEecCcccccc----CcccccCCCCCCEEeCCCCccccccCcccc-----CCCCccEEEeecccCcCC----Cchhh
Q 035904 52 VTALNISYFGLTGT----ISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-----SISTLKILILGDNQLSGS----FPSFI 118 (291)
Q Consensus 52 l~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~----~~~~~ 118 (291)
|++|++++|.+++. ++..+..+++|++|++++|.+....+..+. ..++|+.|++++|.+++. ++..
T Consensus 144 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~- 222 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI- 222 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH-
T ss_pred ceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH-
Confidence 44444444444432 233344455555555555555432222222 244666666666655521 2222
Q ss_pred hhcCCCccEEEccCCcccccc----ChhhhccccCccEEEccccccccc----CccccccCCCCcEEEcccCcCcCccCc
Q 035904 119 ISNMSSIRAIDCNYNSLSGEL----PANIFSYLPFLKSLALSANNFHGQ----IPSTLSNCKQLQMLSLSINDFTGAIPK 190 (291)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~ 190 (291)
+..+++|++|++++|.+.+.. ...++..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 356677777777777665322 123333467777777777776642 455566677888888888877543222
Q ss_pred cCC-----CCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCccccCCCCcccc-----CCCCCCEEEccCCcc
Q 035904 191 EIG-----NLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLTGTIPSSIF-----NLTSLLELDFSNNSL 256 (291)
Q Consensus 191 ~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~n~i 256 (291)
.+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 221 235788888888887754 355566678888999988887654433332 267899999999988
Q ss_pred cc----cCchHHHhhCccccEEEeecceeee
Q 035904 257 TG----SFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 257 ~~----~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
++ .++..+.. +++|+.|++++|++++
T Consensus 383 ~~~~~~~l~~~l~~-~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 383 SDSSCSSLAATLLA-NHSLRELDLSNNCLGD 412 (461)
T ss_dssp CHHHHHHHHHHHHH-CCCCCEEECCSSSCCH
T ss_pred ChhhHHHHHHHHHh-CCCccEEECCCCCCCH
Confidence 75 45554444 8899999999998864
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=6.1e-21 Score=173.92 Aligned_cols=173 Identities=27% Similarity=0.315 Sum_probs=117.0
Q ss_pred CCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhh--h------
Q 035904 73 LSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANI--F------ 144 (291)
Q Consensus 73 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~------ 144 (291)
+++|++|++++|++++ +|. .+++|+.|++++|+++ .+|. .+++|++|++++|.+. .++... .
T Consensus 100 l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~ 169 (622)
T 3g06_A 100 PPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLA-SLPALPSELCKLWAY 169 (622)
T ss_dssp CTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCCCTTCCEEECC
T ss_pred CCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCC----CCCCCCEEECcCCcCC-CcCCccCCCCEEECC
Confidence 3444444444444441 222 3345555555555554 3443 2478888888888876 333211 0
Q ss_pred --------ccccCccEEEcccccccccCcccc---cc--------------CCCCcEEEcccCcCcCccCccCCCCCCcc
Q 035904 145 --------SYLPFLKSLALSANNFHGQIPSTL---SN--------------CKQLQMLSLSINDFTGAIPKEIGNLTKLT 199 (291)
Q Consensus 145 --------~~~~~L~~L~l~~~~~~~~~~~~l---~~--------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 199 (291)
..+++|+.|++++|.+.. ++..+ .. +++|++|++++|.+.+ +| ..+++|+
T Consensus 170 ~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~ 244 (622)
T 3g06_A 170 NNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELK 244 (622)
T ss_dssp SSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred CCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCc
Confidence 123788889998888764 22211 11 2568888888888874 44 4568999
Q ss_pred EEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHH
Q 035904 200 ELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLC 265 (291)
Q Consensus 200 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~ 265 (291)
.|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++|++++..+..+.
T Consensus 245 ~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 245 ELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred EEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 9999999998 4555 5688999999999998 6688899999999999999999977666544
No 87
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=3.6e-21 Score=173.52 Aligned_cols=204 Identities=22% Similarity=0.391 Sum_probs=168.8
Q ss_pred ccCCCCcc-----cccee-EeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEE
Q 035904 31 WTSITSVC-----SWIGI-TCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILI 104 (291)
Q Consensus 31 w~~~~~~c-----~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 104 (291)
|.....+| .|.++ .|. ..+++.|+++++.+++ +|..+ +++|++|++++|+++ .+| ..+++|+.|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 77777888 58887 675 4589999999999986 66544 489999999999999 666 4579999999
Q ss_pred eecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcC
Q 035904 105 LGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 184 (291)
+++|+++ .+|. + .. +|++|++++|.++ .++. .+++|++|++++|.++. +|. .+++|++|++++|.+
T Consensus 107 Ls~N~l~-~ip~-l-~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 107 ACDNRLS-TLPE-L-PA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp CCSSCCS-CCCC-C-CT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred ccCCCCC-Ccch-h-hc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 9999998 4777 3 33 9999999999998 4666 57899999999999985 454 578999999999999
Q ss_pred cCccCccCCCCCCccEEEcCCCcccCCccccccCCCCC-------ceEEccCccccCCCCccccCCCCCCEEEccCCccc
Q 035904 185 TGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAEL-------EWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 185 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
.+ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 85 565 65 89999999999998 5666 543 67 99999999998 56777778999999999999999
Q ss_pred ccCchHHHh
Q 035904 258 GSFRDDLCQ 266 (291)
Q Consensus 258 ~~~~~~~~~ 266 (291)
+.+|..+..
T Consensus 244 ~~~p~~l~~ 252 (571)
T 3cvr_A 244 SRIRESLSQ 252 (571)
T ss_dssp HHHHHHHHH
T ss_pred CcCHHHHHH
Confidence 887776654
No 88
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1.1e-20 Score=173.39 Aligned_cols=209 Identities=25% Similarity=0.291 Sum_probs=159.1
Q ss_pred CCCCCCEEeCCCCccc--cccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 72 NLSSLQTLDLSHNQFS--GTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 72 ~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
.+++|+.+++++|.+. +..+..+..+.+|+.+++..+... .++.. +..+++|+.+++..+......+...+..+++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 446 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCTT
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhccccccccccccccccc
Confidence 4667777777777665 234455556677777777777654 33333 2567788888888777665556666777888
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCc-CccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEcc
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFT-GAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 228 (291)
++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|.+++..|..|.++++|++|+++
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECC
Confidence 888888888887777777888888999999888754 3467788888899999999998887778888888899999999
Q ss_pred CccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhC-ccccEEEeecceeee
Q 035904 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRI-PLLQRFYMTNNHFTG 283 (291)
Q Consensus 229 ~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~-~~L~~L~l~~n~l~~ 283 (291)
+|++.+..+..+..+++|+.|++++|++++..+..+.. + ++|+.|++++|+++.
T Consensus 527 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 527 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC-CCTTCCEEECTTCCBCC
T ss_pred CCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh-hhCcCCEEEeeCCCCcc
Confidence 99888777778888889999999999988666655544 5 578999999888763
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.3e-22 Score=175.83 Aligned_cols=230 Identities=20% Similarity=0.259 Sum_probs=179.6
Q ss_pred CCceEEEEecCcc---ccccCcccc-------cCCCCCCEEeCCCCcccc----ccCccccCCCCccEEEeecccCcCCC
Q 035904 49 THRVTALNISYFG---LTGTISSQV-------GNLSSLQTLDLSHNQFSG----TIPSSIFSISTLKILILGDNQLSGSF 114 (291)
Q Consensus 49 ~~~l~~L~l~~~~---~~~~~~~~~-------~~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~ 114 (291)
.++|++|++++|. +++.+|..+ ..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 5689999999964 444555444 789999999999999986 46778889999999999999986322
Q ss_pred chhh---hhcC---------CCccEEEccCCccccccCh---hhhccccCccEEEcccccccc-----cCccccccCCCC
Q 035904 115 PSFI---ISNM---------SSIRAIDCNYNSLSGELPA---NIFSYLPFLKSLALSANNFHG-----QIPSTLSNCKQL 174 (291)
Q Consensus 115 ~~~~---~~~l---------~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L 174 (291)
+..+ +..+ ++|++|++++|.++..... ..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 2222 2334 8999999999998733222 344578899999999998873 233378899999
Q ss_pred cEEEcccCcCc----CccCccCCCCCCccEEEcCCCcccCC----ccccccC--CCCCceEEccCccccC----CCCccc
Q 035904 175 QMLSLSINDFT----GAIPKEIGNLTKLTELYLGYNKLQGE----IPQDLGN--LAELEWLSLPQSFLTG----TIPSSI 240 (291)
Q Consensus 175 ~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~~~~~~----~~~~~l 240 (291)
++|++++|.+. ..++..+..+++|+.|++++|.+++. ++..+.. +++|++|++++|.+.. .++..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 99999999985 45677888999999999999999854 4566643 8999999999999986 356656
Q ss_pred -cCCCCCCEEEccCCcccccCc--hHHHhhCccccEEEeec
Q 035904 241 -FNLTSLLELDFSNNSLTGSFR--DDLCQRIPLLQRFYMTN 278 (291)
Q Consensus 241 -~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~~L~~L~l~~ 278 (291)
..+++|++|++++|++++..+ ..+...+++++.+.+..
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 568999999999999997774 55666667776666554
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=6.9e-21 Score=150.94 Aligned_cols=186 Identities=24% Similarity=0.318 Sum_probs=137.1
Q ss_pred CccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCc
Q 035904 36 SVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFP 115 (291)
Q Consensus 36 ~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 115 (291)
..|.|.++.|.. +.++ .+|.. -.++|++|++++|++++..+..+..+++|++|++++|++. .++
T Consensus 5 C~C~~~~v~c~~------------~~l~-~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~ 68 (208)
T 2o6s_A 5 CSCSGTTVECYS------------QGRT-SVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP 68 (208)
T ss_dssp CEEETTEEECCS------------SCCS-SCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCC
T ss_pred CEECCCEEEecC------------CCcc-CCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccC
Confidence 447788887752 3333 23322 2457888888888887555566778888888888888887 666
Q ss_pred hhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCC
Q 035904 116 SFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNL 195 (291)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 195 (291)
...+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+
T Consensus 69 ~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l 147 (208)
T 2o6s_A 69 NGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147 (208)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccC
Confidence 666677888888888888887 6666666678888888888888876656667788888888888888886666667888
Q ss_pred CCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCC
Q 035904 196 TKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTS 245 (291)
Q Consensus 196 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 245 (291)
++|+.|++++|.+.. .++.|+.|++..|.+.+.+|..++.++.
T Consensus 148 ~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 148 TSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 888888888887653 3457888888888888877776665543
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.4e-22 Score=179.49 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=109.7
Q ss_pred ceEEEEecCccccc----cCcccccCCCCCCEEeCCCCccccccCcccc-----CCCCccEEEeecccCcCCCc---hhh
Q 035904 51 RVTALNISYFGLTG----TISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-----SISTLKILILGDNQLSGSFP---SFI 118 (291)
Q Consensus 51 ~l~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~---~~~ 118 (291)
+|++|++++|.+++ .++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++... ...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 58888888887774 4466777788888888888877643333222 24567777777777663221 122
Q ss_pred hhcCCCccEEEccCCccccccChhhhc----cccCccEEEccccccccc----CccccccCCCCcEEEcccCcCcCcc--
Q 035904 119 ISNMSSIRAIDCNYNSLSGELPANIFS----YLPFLKSLALSANNFHGQ----IPSTLSNCKQLQMLSLSINDFTGAI-- 188 (291)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-- 188 (291)
+..+++|++|++++|.+.+.....+.. ..++|++|++++|.+... ++..+..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 356677888888877766333322221 244777777777766542 3445556677777777777664321
Q ss_pred ---CccCCCCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCcccc
Q 035904 189 ---PKEIGNLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 189 ---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
+..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG 297 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence 22233456666666666666532 3444445556666666666554
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.2e-20 Score=161.33 Aligned_cols=235 Identities=16% Similarity=0.120 Sum_probs=162.5
Q ss_pred ccccceeEeecC---------CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccC-ccccCCCCccE-EEe
Q 035904 37 VCSWIGITCDVS---------THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIP-SSIFSISTLKI-LIL 105 (291)
Q Consensus 37 ~c~~~~~~~~~~---------~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l 105 (291)
.|.+..+.|... ...+++|++++|.++...+.+|.++++|++|+|++|++.+.++ ..|.++++++. +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 367777888532 2468888999988886666678888999999998888765554 46777887765 455
Q ss_pred ecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEccc-ccccccCccccccCC-CCcEEEcccCc
Q 035904 106 GDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSA-NNFHGQIPSTLSNCK-QLQMLSLSIND 183 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~l~~~~ 183 (291)
..|++. .++...+..+++|++|++++|++. .++...+....++..+++.. +.+....+..+..+. .++.|++++|.
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred cCCccc-ccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 567776 666666688888999999888887 55554444566777777755 445544444555554 57888888888
Q ss_pred CcCccCccCCCCCCccEEEcCC-CcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCch
Q 035904 184 FTGAIPKEIGNLTKLTELYLGY-NKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRD 262 (291)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~ 262 (291)
+....+..+ ...+++.+++.+ |.++...+.+|..+++|++|++++|+++...+.. +.+|+.|.+.++.-...+|.
T Consensus 166 i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 166 IQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred ccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 884444433 456788888875 5555333456788888999999999887544433 45666676666543335653
Q ss_pred HHHhhCccccEEEeecc
Q 035904 263 DLCQRIPLLQRFYMTNN 279 (291)
Q Consensus 263 ~~~~~~~~L~~L~l~~n 279 (291)
...+++|+.+++.++
T Consensus 242 --l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 --LEKLVALMEASLTYP 256 (350)
T ss_dssp --TTTCCSCCEEECSCH
T ss_pred --chhCcChhhCcCCCC
Confidence 334788888888754
No 93
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.85 E-value=3.3e-20 Score=163.87 Aligned_cols=216 Identities=24% Similarity=0.377 Sum_probs=87.3
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
.++++|++++|.+++ +|.. .++|++|++++|++++ +| .+..+++|+.|++++|.+. .+|.. .++|++|+
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ 221 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIV 221 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEE
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEE
Confidence 456666666666553 3321 2355666666555553 33 3555555555555555554 23221 13444444
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCcccc-----------------ccCCCCcEEEcccCcCcCc--cCc
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTL-----------------SNCKQLQMLSLSINDFTGA--IPK 190 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~~~~--~~~ 190 (291)
+++|.+. .++. +..+++|++|++++|.+.. ++... ...++|++|++++|.+.+. .|.
T Consensus 222 l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 222 AGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp CCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred CcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCC
Confidence 4444444 3332 2244444444444444331 11110 0113444444444444321 110
Q ss_pred cC-------------CCC-CCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcc
Q 035904 191 EI-------------GNL-TKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSL 256 (291)
Q Consensus 191 ~~-------------~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i 256 (291)
.+ ..+ ++|+.|++++|.+++ +|.. +++|++|++++|.+++ ++. .+++|++|++++|.+
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCC
Confidence 00 011 245555555555442 2322 3456666666665552 333 245666666666666
Q ss_pred cc--cCchHHHhhC-------------ccccEEEeecceeee--eCCCCC
Q 035904 257 TG--SFRDDLCQRI-------------PLLQRFYMTNNHFTG--SIPHNL 289 (291)
Q Consensus 257 ~~--~~~~~~~~~~-------------~~L~~L~l~~n~l~~--~ip~~~ 289 (291)
.+ .+|..+.. + ++|+.|++++|++++ .+|..+
T Consensus 370 ~~l~~ip~~l~~-L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 370 REFPDIPESVED-LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp SSCCCCCTTCCE-EECCC--------------------------------
T ss_pred CcCCCChHHHHh-hhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 65 44443322 2 556666666666665 555543
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.1e-19 Score=160.45 Aligned_cols=209 Identities=25% Similarity=0.328 Sum_probs=112.0
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEc
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDC 130 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 130 (291)
++++|++++|.+++ +| .+..+++|++|++++|++++ +|.. ..+|++|++++|.+. .+|. +..+++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCCCCCCEEEC
Confidence 45555555555543 33 35555555555555555552 3322 135555555555555 3442 356666666666
Q ss_pred cCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccC
Q 035904 131 NYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQG 210 (291)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 210 (291)
++|.+. .++. ..++|++|++++|.+. .+| .+..+++|++|++++|.+.+ +|.. +++|+.|++++|.+++
T Consensus 203 ~~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 203 DNNSLK-KLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCCS-SCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred CCCcCC-cCCC----CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 666665 2332 1246777777777666 444 36777788888888877763 2322 2344444444444332
Q ss_pred Cccccc-----------------------c-------------CC-CCCceEEccCccccCCCCccccCCCCCCEEEccC
Q 035904 211 EIPQDL-----------------------G-------------NL-AELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSN 253 (291)
Q Consensus 211 ~~~~~~-----------------------~-------------~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 253 (291)
+|..+ . .. ++|++|++++|.+.+ ++. .+++|++|++++
T Consensus 272 -l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~ 346 (454)
T 1jl5_A 272 -LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASF 346 (454)
T ss_dssp -CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred -cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCC
Confidence 11110 0 01 234444444444432 221 135667777777
Q ss_pred CcccccCchHHHhhCccccEEEeecceeee--eCCCCC
Q 035904 254 NSLTGSFRDDLCQRIPLLQRFYMTNNHFTG--SIPHNL 289 (291)
Q Consensus 254 n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--~ip~~~ 289 (291)
|.++ .+|. .+++|+.|++++|++++ .+|..+
T Consensus 347 N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 347 NHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp SCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred Cccc-cccc----hhhhccEEECCCCCCCcCCCChHHH
Confidence 7666 3444 25778888888888876 566655
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.9e-20 Score=160.17 Aligned_cols=225 Identities=16% Similarity=0.155 Sum_probs=175.3
Q ss_pred EEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccE-EEcc
Q 035904 53 TALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA-IDCN 131 (291)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~ 131 (291)
+.++-++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|++.+.++..++.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35677788887 556544 4689999999999995555679999999999999999876788888889988876 5666
Q ss_pred CCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEccc-CcCcCccCccCCCCC-CccEEEcCCCccc
Q 035904 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSI-NDFTGAIPKEIGNLT-KLTELYLGYNKLQ 209 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~ 209 (291)
.|.+. .++...+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 78888 78778888999999999999999866665666777888898866 456544555666664 6899999999998
Q ss_pred CCccccccCCCCCceEEccC-ccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecc-eeeeeCCC
Q 035904 210 GEIPQDLGNLAELEWLSLPQ-SFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN-HFTGSIPH 287 (291)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n-~l~~~ip~ 287 (291)
.++.......+|+.+++.+ |.+....+..+..+++|++|++++|.++ .+|.. .+.+|+.|++.++ .+. .+|.
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~---~~~~L~~L~~l~~~~l~-~lP~ 241 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY---GLENLKKLRARSTYNLK-KLPT 241 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS---SCTTCCEEECTTCTTCC-CCCC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh---hhccchHhhhccCCCcC-cCCC
Confidence 4554444567899999986 5666455567889999999999999998 56653 2667888887776 454 7774
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=1.9e-19 Score=144.77 Aligned_cols=163 Identities=26% Similarity=0.372 Sum_probs=134.1
Q ss_pred ccCCCCccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccC
Q 035904 31 WTSITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQL 110 (291)
Q Consensus 31 w~~~~~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 110 (291)
|......|+|.++.|. ++.++ .+|..+ .++|++|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus 12 ~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCR------------SKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECT------------TSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEcc------------CCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 6666799999998885 33333 344433 38899999999999977788899999999999999998
Q ss_pred cCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCc
Q 035904 111 SGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPK 190 (291)
Q Consensus 111 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 190 (291)
. .++...+..+++|++|++++|.+. .++...+..+++|++|++++|.+. .+|..+..+++|++|++++|.+....+.
T Consensus 77 ~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 77 G-ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred C-CcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 7 777777788999999999999998 777777778899999999999988 6677788889999999999998866667
Q ss_pred cCCCCCCccEEEcCCCcccCC
Q 035904 191 EIGNLTKLTELYLGYNKLQGE 211 (291)
Q Consensus 191 ~~~~~~~L~~L~l~~~~~~~~ 211 (291)
.+..+++|+.|++.+|.+...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTT
T ss_pred HHhCCCCCCEEEeeCCCccCC
Confidence 788889999999999887643
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=8.2e-20 Score=164.67 Aligned_cols=185 Identities=23% Similarity=0.344 Sum_probs=154.8
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEE
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSL 153 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 153 (291)
.+|+.|++++|++++ +|..+ .++|+.|++++|++. .+| ..+++|++|++++|.++ .++. +. . +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~-~ip~-l~-~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLS-TLPE-LP-A--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC-CC-T--TCCEE
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCC-Ccch-hh-c--CCCEE
Confidence 389999999999985 67655 378999999999998 788 35799999999999998 4776 33 3 99999
Q ss_pred EcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcccc
Q 035904 154 ALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 154 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
++++|.++. +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 126 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 126 DVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred ECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 999999985 554 68999999999999985 554 57899999999999985 666 55 89999999999998
Q ss_pred CCCCccccCCCCC-------CEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 234 GTIPSSIFNLTSL-------LELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 234 ~~~~~~l~~~~~L-------~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
.+|. +.. +| +.|++++|.++ .+|..++. +++|+.|++++|++++.+|..+
T Consensus 194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 194 -SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp -SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSCCHHHHHHH
T ss_pred -chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcCCCcCHHHH
Confidence 5555 443 67 99999999999 68888887 9999999999999998777543
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=3.1e-19 Score=148.73 Aligned_cols=173 Identities=23% Similarity=0.330 Sum_probs=136.9
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
+..+++|++|++++|.+.. ++ .+..+++|+.|++++|++. .++. +..+++|++|++++|.+. .++. +..+++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~ 113 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKK 113 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTT
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCC-CChh--hccCCC
Confidence 4568889999999998873 33 4788899999999999987 4554 488999999999999887 4443 557889
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccC
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQ 229 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 229 (291)
|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 99999999888743 4677888899999998888754 457788888899998888875444 77888888888888
Q ss_pred ccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 230 SFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 230 ~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
|.+.+. + .+..+++|+.|++++|++..
T Consensus 188 N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 188 NHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 888743 3 47778888888888888774
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2.7e-19 Score=153.62 Aligned_cols=176 Identities=23% Similarity=0.281 Sum_probs=124.4
Q ss_pred CEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhh-cCCCccEEEccCCccccccChhhhccccCccEEEc
Q 035904 77 QTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIIS-NMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLAL 155 (291)
Q Consensus 77 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 155 (291)
+.+++++++++ .+|..+. ..++.|++++|+++ .++...+. .+++|++|++++|.+. .++...+..+++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 57888888877 5565443 45788888888887 55555445 7888888888888887 666555667888888888
Q ss_pred ccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccc---cCCCCCceEEccCccc
Q 035904 156 SANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDL---GNLAELEWLSLPQSFL 232 (291)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 232 (291)
++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..+ ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 8888776666667778888888888888876667777778888888888888774433444 4567777777777777
Q ss_pred cCCCCccccCCCC--CCEEEccCCccc
Q 035904 233 TGTIPSSIFNLTS--LLELDFSNNSLT 257 (291)
Q Consensus 233 ~~~~~~~l~~~~~--L~~L~l~~n~i~ 257 (291)
....+..+..++. ++.|++++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 7544445555554 366777777765
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=3.4e-19 Score=148.43 Aligned_cols=171 Identities=23% Similarity=0.367 Sum_probs=146.3
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+++.|+++++.+... + .+..+++|++|++++|++++.. . +..+++|+.|++++|.+. .++. +..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCC-CChh--hccCCCCCEE
Confidence 45799999999998754 3 3888999999999999998543 3 899999999999999997 4554 5899999999
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 118 ~L~~n~i~-~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 118 SLEHNGIS-DIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp ECTTSCCC-CCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCcCC-CCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 99999998 443 255899999999999999854 578899999999999999986544 88999999999999999
Q ss_pred cCCccccccCCCCCceEEccCccccCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGT 235 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 235 (291)
++ ++ .+..+++|+.|++++|.+...
T Consensus 191 ~~-l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 191 SD-LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CB-CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred CC-Ch-hhccCCCCCEEECcCCcccCC
Confidence 85 34 488899999999999998753
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=7.4e-19 Score=140.41 Aligned_cols=153 Identities=20% Similarity=0.234 Sum_probs=97.8
Q ss_pred CEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcc
Q 035904 77 QTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156 (291)
Q Consensus 77 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (291)
++++++++.++ .+|..+. ..++.|++++|.+.+..+..++..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECC
Confidence 47777777776 4555442 345677777777764334444566777777777777766 4555445566677777777
Q ss_pred cccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcccc
Q 035904 157 ANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 157 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
+|.+....+..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77666555555666666666666666666555666666666666666666666555566666666666666666654
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=139.01 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=128.2
Q ss_pred EEEecCccccccCcccccCCCCCCEEeCCCCccccccC-ccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccC
Q 035904 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIP-SSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNY 132 (291)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 132 (291)
.++++++.++. +|..+ .+.+++|++++|++++..+ ..|..+++|+.|++++|.+. .++...+..+++|++|++++
T Consensus 15 ~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence 67788888874 55533 3467899999999986544 45788999999999999988 56665568999999999999
Q ss_pred CccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCC
Q 035904 133 NSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGE 211 (291)
Q Consensus 133 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 211 (291)
|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+...
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9998 67777777899999999999999877788889999999999999999877788899999999999999988743
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.2e-18 Score=139.12 Aligned_cols=151 Identities=26% Similarity=0.289 Sum_probs=82.5
Q ss_pred CEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcc
Q 035904 77 QTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALS 156 (291)
Q Consensus 77 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 156 (291)
+.++++++.++ .+|..+. ++|+.|++++|.+. .++...+..+++|++|++++|.+. .+....+..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 45666666666 4454332 46666666666665 444444455666666666666665 3333334455556666666
Q ss_pred cccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccc
Q 035904 157 ANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFL 232 (291)
Q Consensus 157 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (291)
+|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 5555543333445555555555555555544455555555555555555555544444455555555555555544
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.2e-18 Score=139.11 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=134.9
Q ss_pred cEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcc
Q 035904 101 KILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLS 180 (291)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 180 (291)
+.+++++++++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 57888888887 777654 378999999999998 6777667789999999999999997778899999999999999
Q ss_pred cCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 181 INDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 181 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
+|.+....+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999996666778899999999999999998778889999999999999999997777788889999999999998864
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.2e-19 Score=160.96 Aligned_cols=171 Identities=23% Similarity=0.386 Sum_probs=123.4
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
..+|+.|+++++.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+. .++. +..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS--LKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCTT--STTCTTCCEE
T ss_pred CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CChh--hccCCCCCEE
Confidence 45677888888877643 3 47778888888888888774333 777888888888888776 4442 4677888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKL 208 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 208 (291)
++++|.+. .++. +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+
T Consensus 115 ~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 88888876 3332 44778888888888877743 567777888888888888775544 77778888888888877
Q ss_pred cCCccccccCCCCCceEEccCccccCC
Q 035904 209 QGEIPQDLGNLAELEWLSLPQSFLTGT 235 (291)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~ 235 (291)
++. ..+..+++|+.|++++|.+.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCC
Confidence 743 3567777888888888877643
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=5.7e-19 Score=151.60 Aligned_cols=176 Identities=29% Similarity=0.255 Sum_probs=147.3
Q ss_pred EEEEecCccccccCcccccCCCCCCEEeCCCCccccccCcccc-CCCCccEEEeecccCcCCCchhhhhcCCCccEEEcc
Q 035904 53 TALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIF-SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131 (291)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 131 (291)
+.++.+++.++. +|..+ .+.++.|+|++|++++..+..+. .+++|+.|++++|++. .++...+..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 367778888874 55433 34689999999999976677777 8999999999999998 6666666999999999999
Q ss_pred CCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccC---CCCCCccEEEcCCCcc
Q 035904 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEI---GNLTKLTELYLGYNKL 208 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 208 (291)
+|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 99998 7777778899999999999999997778899999999999999999996555555 5689999999999999
Q ss_pred cCCccccccCCCC--CceEEccCcccc
Q 035904 209 QGEIPQDLGNLAE--LEWLSLPQSFLT 233 (291)
Q Consensus 209 ~~~~~~~~~~~~~--L~~L~l~~~~~~ 233 (291)
+...+..+..++. ++.|++.+|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 8655567777766 488999999875
No 107
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=4e-20 Score=172.03 Aligned_cols=236 Identities=21% Similarity=0.198 Sum_probs=133.8
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCccCCCccC-CCCccccceeEeecCCCceEEEEecCccccccCcccccCCCCCCEEe
Q 035904 2 NNINTTDQQALLALKARITSDPSNLLAKNWTS-ITSVCSWIGITCDVSTHRVTALNISYFGLTGTISSQVGNLSSLQTLD 80 (291)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~c~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 80 (291)
..+.+.+.+++.++..++.......... |.. ....+.|.+..+. .+++++|++.++.+... +..+.....|..+.
T Consensus 127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~ 202 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVS--TPLTPKIELFANGKDEA-NQALLQHKKLSQYS 202 (727)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceec--CCccceEEeeCCCCCcc-hhhHhhcCccCccc
Confidence 3467788899999999886655555444 643 3345667776665 67899999999988753 33333333333333
Q ss_pred -----CCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEc
Q 035904 81 -----LSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLAL 155 (291)
Q Consensus 81 -----l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 155 (291)
+..|.+. ..+..+..++.|+.|++++|.+. .+|..+ ..+++|++|++++|.++ .+|..+ ..+++|++|+|
T Consensus 203 i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~-~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L 277 (727)
T 4b8c_D 203 IDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANI-FKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDL 277 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGG-GGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEEC
T ss_pred ccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhh-cCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeC
Confidence 3333343 55778889999999999999998 888877 58999999999999998 888765 58999999999
Q ss_pred ccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCC-CCceEEccCccccC
Q 035904 156 SANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLA-ELEWLSLPQSFLTG 234 (291)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 234 (291)
++|.+. .+|..+..+++|++|++++|.+. .+|..|..+++|+.|++++|.+++.+|..+.... .+..+++.+|.+.+
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 999999 67888999999999999999998 6677799999999999999999987787765432 22346788888876
Q ss_pred CCCccccCCCCCCEEEccCC
Q 035904 235 TIPSSIFNLTSLLELDFSNN 254 (291)
Q Consensus 235 ~~~~~l~~~~~L~~L~l~~n 254 (291)
.+|. .|+.|+++.|
T Consensus 356 ~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 356 PLPH------ERRFIEINTD 369 (727)
T ss_dssp CCCC------C---------
T ss_pred cCcc------ccceeEeecc
Confidence 6654 4556667666
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4e-18 Score=137.03 Aligned_cols=156 Identities=24% Similarity=0.280 Sum_probs=135.0
Q ss_pred CccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEE
Q 035904 99 TLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLS 178 (291)
Q Consensus 99 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 178 (291)
.-+.++++++.+. .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 3567889888887 788754 488999999999998 55555667899999999999999866666788999999999
Q ss_pred cccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 179 LSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
+++|.+....+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|+.|++++|++..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999999777777889999999999999998 778888999999999999999997777778899999999999999885
Q ss_pred cC
Q 035904 259 SF 260 (291)
Q Consensus 259 ~~ 260 (291)
..
T Consensus 174 ~c 175 (229)
T 3e6j_A 174 EC 175 (229)
T ss_dssp TB
T ss_pred Cc
Confidence 44
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3e-18 Score=155.99 Aligned_cols=187 Identities=22% Similarity=0.318 Sum_probs=144.2
Q ss_pred EEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC
Q 035904 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133 (291)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 133 (291)
.+.+..+.+.+..+ +..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++. +..+++|++|++++|
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCC
Confidence 33444444443332 457888888999988887 333 5788899999999999887 4444 478899999999999
Q ss_pred ccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCcc
Q 035904 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIP 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 213 (291)
.+. .++ .+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..|
T Consensus 98 ~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 98 KIK-DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CCC-CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCC-CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 887 444 245788899999999888743 4578888999999999988754 567788899999999998886555
Q ss_pred ccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 214 QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 214 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++.+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 78888999999999988754 457788899999999988874
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.4e-18 Score=134.17 Aligned_cols=153 Identities=19% Similarity=0.278 Sum_probs=98.5
Q ss_pred hcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCcc
Q 035904 120 SNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLT 199 (291)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 199 (291)
..+++|++|++++|.+. .++ . +..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34555666666666555 444 2 335666666666666543 123566677777777777777655566677777777
Q ss_pred EEEcCCCcccCCccccccCCCCCceEEccCcc-ccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeec
Q 035904 200 ELYLGYNKLQGEIPQDLGNLAELEWLSLPQSF-LTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTN 278 (291)
Q Consensus 200 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~ 278 (291)
.|++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+ ..+++|+.|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l-~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GI-EDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TG-GGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-Hh-ccCCCCCEEEeeC
Confidence 77777777776566677777777777777776 44 333 56677778888888887774 33 23 3477888888888
Q ss_pred ceee
Q 035904 279 NHFT 282 (291)
Q Consensus 279 n~l~ 282 (291)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8775
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.3e-18 Score=134.25 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=90.5
Q ss_pred CCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCc
Q 035904 96 SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQ 175 (291)
Q Consensus 96 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 175 (291)
.+++|+.|++++|.+. .++ . +..+++|++|++++|.+. .++ .+..+++|++|++++|.+....+..+..+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 3445555555555554 444 2 255555555555555443 222 233566666666666666544555666666777
Q ss_pred EEEcccCcCcCccCccCCCCCCccEEEcCCCc-ccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCC
Q 035904 176 MLSLSINDFTGAIPKEIGNLTKLTELYLGYNK-LQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNN 254 (291)
Q Consensus 176 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 254 (291)
+|++++|.+.+..+..+..+++|+.|++++|. ++ .++ .+..+++|++|++++|.+.+. + .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 77777776665555666667777777777776 44 333 466677777777777777642 2 5666777777777777
Q ss_pred ccc
Q 035904 255 SLT 257 (291)
Q Consensus 255 ~i~ 257 (291)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 112
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.76 E-value=1.1e-19 Score=165.85 Aligned_cols=231 Identities=12% Similarity=0.106 Sum_probs=153.9
Q ss_pred ceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccC-ccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 51 RVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIP-SSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 51 ~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
+++.|+++++. ...++..+..+++|++|++++|.++.... ..+..+++|+.|+++ +.+.+.....+...+++|++|+
T Consensus 271 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 271 KLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEE
Confidence 45555555532 22455566677888888888887653322 345678888888887 3333233333346778888888
Q ss_pred ccC-----------CccccccChhhhccccCccEEEcccccccccCcccccc-CCCCcEEEcc----cCcCcCc-----c
Q 035904 130 CNY-----------NSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSN-CKQLQMLSLS----INDFTGA-----I 188 (291)
Q Consensus 130 l~~-----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~~~~~~~-----~ 188 (291)
+++ +.+++.....+...+++|++|++..+.++......+.. +++|++|+++ .+.+++. +
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 883 45554434444556888888888777776544444544 7888898886 4455532 2
Q ss_pred CccCCCCCCccEEEcCCCc--ccCCccccc-cCCCCCceEEccCccccCC-CCccccCCCCCCEEEccCCcccccCchHH
Q 035904 189 PKEIGNLTKLTELYLGYNK--LQGEIPQDL-GNLAELEWLSLPQSFLTGT-IPSSIFNLTSLLELDFSNNSLTGSFRDDL 264 (291)
Q Consensus 189 ~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 264 (291)
+..+..+++|+.|+++.|. +++.....+ ..+++|++|++++|.+++. .+..+..+++|++|++++|.+++.....+
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 2335568889999997644 444333333 3478899999999988653 23445678999999999999876655556
Q ss_pred HhhCccccEEEeecceeee
Q 035904 265 CQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 265 ~~~~~~L~~L~l~~n~l~~ 283 (291)
...+++|+.|++++|+++.
T Consensus 509 ~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHCSSCCEEEEESCBCCT
T ss_pred HHhcCccCeeECcCCcCCH
Confidence 6668999999999999874
No 113
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2.1e-19 Score=163.93 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=66.2
Q ss_pred CCCCcEEEcccCcCcCccCccCCC-CCCccEEEcC----CCcccCC-----ccccccCCCCCceEEccCcc--ccCCCCc
Q 035904 171 CKQLQMLSLSINDFTGAIPKEIGN-LTKLTELYLG----YNKLQGE-----IPQDLGNLAELEWLSLPQSF--LTGTIPS 238 (291)
Q Consensus 171 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~ 238 (291)
+++|++|++..+.+++.....+.. +++|+.|+++ .+.+++. ++..+..+++|+.|+++.|. +++....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455555555444444332222322 5566666664 3444432 22234456777777775433 3322222
Q ss_pred cc-cCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeee
Q 035904 239 SI-FNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 239 ~l-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
.+ ..+++|++|++++|.+++.....+...+++|+.|++++|.+++
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 22 2478899999999988765555566668999999999998764
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=7.2e-20 Score=165.60 Aligned_cols=198 Identities=20% Similarity=0.191 Sum_probs=140.9
Q ss_pred cCCCCCCEEeCCCCccccccCccccCCCCccEEEeeccc-------------CcCCCchhhhhcCCCccEEE-ccCCccc
Q 035904 71 GNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQ-------------LSGSFPSFIISNMSSIRAID-CNYNSLS 136 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~L~~L~-l~~~~~~ 136 (291)
..+++|+.|+|++|++. .+|..+..+++|+.|++++|. ..+..| ..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcccc
Confidence 56788888999988887 788888888888888886653 332333 3346777777777 5554432
Q ss_pred cccChhh-----hc--cccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCccc
Q 035904 137 GELPANI-----FS--YLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 137 ~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
.+.... .. ....|+.|++++|.++. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 221100 00 12257888888888874 454 788888888888888887 66777888888888888888887
Q ss_pred CCccccccCCCCCceEEccCccccCCC-CccccCCCCCCEEEccCCcccccCch--HHHhhCccccEEEe
Q 035904 210 GEIPQDLGNLAELEWLSLPQSFLTGTI-PSSIFNLTSLLELDFSNNSLTGSFRD--DLCQRIPLLQRFYM 276 (291)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~n~i~~~~~~--~~~~~~~~L~~L~l 276 (291)
+ +| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|++++..+. .+...+|+|+.|++
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4 55 6778888888888888887665 77788888888888888888765432 34445788888764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-17 Score=136.55 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=133.2
Q ss_pred CCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCcc
Q 035904 72 NLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLK 151 (291)
Q Consensus 72 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 151 (291)
.+.++..++++.+.++. ++ .+..+++|+.|++++|.+. .++ . +..+++|++|++++|.+. .++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence 45566777888888873 33 5778899999999999887 666 3 478899999999999988 4554 56889999
Q ss_pred EEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcc
Q 035904 152 SLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSF 231 (291)
Q Consensus 152 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 231 (291)
+|++++|.+... +. +.. ++|++|++++|.+.+. +.+..+++|+.|++++|.+++. + .+..+++|+.|++++|.
T Consensus 89 ~L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 89 ELSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred EEECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence 999999988743 32 233 8899999999988743 3477888999999999988754 3 57788889999999988
Q ss_pred ccCCCCccccCCCCCCEEEccCCccccc
Q 035904 232 LTGTIPSSIFNLTSLLELDFSNNSLTGS 259 (291)
Q Consensus 232 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 259 (291)
+.+. ..+..+++|+.|++++|++...
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCC
Confidence 8755 5677888889999998888744
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=6.7e-18 Score=138.54 Aligned_cols=149 Identities=23% Similarity=0.359 Sum_probs=66.2
Q ss_pred ccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccC
Q 035904 70 VGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPF 149 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 149 (291)
+..+++|++|++++|+++ .++ .+..+++|+.|++++|.+. .++. +..+++|++|++++|.+. .++... . ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLK-NLNGIP--S-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCS-CCTTCC--C-SS
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccC-CcCccc--c-Cc
Confidence 334444444444444444 222 3444444445555444444 2222 244444555555544444 222211 1 44
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccC
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQ 229 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 229 (291)
|++|++++|.+... ..+..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 55555555544421 2344445555555555554422 1 344444555555555554432 3344444555555555
Q ss_pred cccc
Q 035904 230 SFLT 233 (291)
Q Consensus 230 ~~~~ 233 (291)
|.+.
T Consensus 182 N~~~ 185 (263)
T 1xeu_A 182 QKCV 185 (263)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 5444
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.9e-17 Score=140.30 Aligned_cols=223 Identities=14% Similarity=0.073 Sum_probs=137.9
Q ss_pred CCceEEEEecCcccc--------------------ccCcccccC--------CCCCCEEeCCCCccccccCccccCCCCc
Q 035904 49 THRVTALNISYFGLT--------------------GTISSQVGN--------LSSLQTLDLSHNQFSGTIPSSIFSISTL 100 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~--------------------~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~~l~~L 100 (291)
.++|+.|++++|.+. .....+|.. |++|+.+++.+ .++.....+|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 457999999999887 112234555 77777777776 6664455667777777
Q ss_pred cEEEeecccCcCCCchhhhhcCCCccEEEccCCccc---cccChhhhccccCcc-EEEcc--------------------
Q 035904 101 KILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLS---GELPANIFSYLPFLK-SLALS-------------------- 156 (291)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~-~L~l~-------------------- 156 (291)
+.+++.+|.+. .++..+|..+.++.++........ ..+....|..+..|+ .+.+.
T Consensus 127 ~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 77777777665 556666666666666655442210 012222233344443 22221
Q ss_pred -----cccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCc-eEEccCc
Q 035904 157 -----ANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELE-WLSLPQS 230 (291)
Q Consensus 157 -----~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~ 230 (291)
++-...........+++|+.+++.+|.+....+..|..+.+|+.+++.++ ++.....+|.++.+|+ .+.+.+
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 11000000000113678888888887777566667888888888888876 5545556778888888 888877
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEe
Q 035904 231 FLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYM 276 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l 276 (291)
.+......+|..|++|+.++++.|.+. .++...+.++++|+.++.
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 566566677788888888888887777 555555666788887753
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.9e-16 Score=120.89 Aligned_cols=140 Identities=21% Similarity=0.237 Sum_probs=105.3
Q ss_pred ccCccEEEccccccc-ccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceE
Q 035904 147 LPFLKSLALSANNFH-GQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWL 225 (291)
Q Consensus 147 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 225 (291)
.++|++|++++|.+. ..++..+..+++|++|++++|.+... ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777765 34555667777888888888877744 567778888888888888876667777778888888
Q ss_pred EccCccccCCCC-ccccCCCCCCEEEccCCcccccCc--hHHHhhCccccEEEeecceeeeeCCCCC
Q 035904 226 SLPQSFLTGTIP-SSIFNLTSLLELDFSNNSLTGSFR--DDLCQRIPLLQRFYMTNNHFTGSIPHNL 289 (291)
Q Consensus 226 ~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 289 (291)
++++|.+.+... ..+..+++|++|++++|.+.+..+ ...+..+++|+.|++++|.+. .+|+.-
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 888888875422 677788899999999999885443 134556899999999999887 788653
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.1e-17 Score=140.01 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=138.6
Q ss_pred CceEEEEecCccccccCcccccC-CCCCCEEeCCCCccc--cc------------------cCccccC--------CCCc
Q 035904 50 HRVTALNISYFGLTGTISSQVGN-LSSLQTLDLSHNQFS--GT------------------IPSSIFS--------ISTL 100 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~--~~------------------~~~~l~~--------l~~L 100 (291)
.++++|.+++.- ...-...+.. +++|+.|+|++|++. .. ...+|.+ +++|
T Consensus 25 ~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L 103 (329)
T 3sb4_A 25 NSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL 103 (329)
T ss_dssp HHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred CceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence 468888888752 1111122333 889999999999887 11 1223334 4555
Q ss_pred cEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccc----cccCccccccCCCCc-
Q 035904 101 KILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNF----HGQIPSTLSNCKQLQ- 175 (291)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~~l~~~~~L~- 175 (291)
+.+++.. .+. .++..+|.++++|+.+++.+|.+. .++...|..+.++..+....... .......+..+..|+
T Consensus 104 ~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 104 EKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp CC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred cEEECCc-ccc-chhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 5555554 443 444444455555555555555444 44444444444444443322110 001111222223332
Q ss_pred EEEcc-------------------------cCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCc
Q 035904 176 MLSLS-------------------------INDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQS 230 (291)
Q Consensus 176 ~L~l~-------------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 230 (291)
.+.+. ++-...........+++|+.+++.+|.++.....+|.++.+|+.+++.+|
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 11111 10000000000012789999999999998666678999999999999998
Q ss_pred cccCCCCccccCCCCCC-EEEccCCcccccCchHHHhhCccccEEEeecceeeeeCCCCCC
Q 035904 231 FLTGTIPSSIFNLTSLL-ELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIPHNLW 290 (291)
Q Consensus 231 ~~~~~~~~~l~~~~~L~-~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 290 (291)
+......+|..|.+|+ .+++.+ .+. .++...+.+|++|+.+++++|.++ .|++..|
T Consensus 261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF 317 (329)
T 3sb4_A 261 -LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT-TLGDELF 317 (329)
T ss_dssp -CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCC-EECTTTT
T ss_pred -cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccC-ccchhhh
Confidence 7767778899999999 999998 565 566666777999999999999998 7876544
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.1e-16 Score=123.47 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=75.6
Q ss_pred cEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcc
Q 035904 101 KILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLS 180 (291)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 180 (291)
+.++++++++. .+|..+ ..++++|++++|.+.+..+...+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666665 555533 22666666666666522222334566666666666666665555556666666666666
Q ss_pred cCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcccc
Q 035904 181 INDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 181 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
+|.+.+..+..|..+++|+.|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 66666555555556666666666666665555555555566666666666554
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=4.2e-16 Score=118.97 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=79.0
Q ss_pred CceEEEEecCcccc-ccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 50 HRVTALNISYFGLT-GTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 50 ~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
+++++|++++|.++ +.+|..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+.+|.. +..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML-AEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH-HHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH-HhhCCCCCEE
Confidence 45777777777766 45566666677777777777776633 55666777777777777766434433 3556666666
Q ss_pred EccCCccccccCh-hhhccccCccEEEcccccccccCc---cccccCCCCcEEEcccCcCc
Q 035904 129 DCNYNSLSGELPA-NIFSYLPFLKSLALSANNFHGQIP---STLSNCKQLQMLSLSINDFT 185 (291)
Q Consensus 129 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~ 185 (291)
++++|.+. .++. ..+..+++|++|++++|.+....+ ..+..+++|++|++++|...
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665 3221 334455666666666666553322 24555556666665555554
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=5.9e-19 Score=159.60 Aligned_cols=195 Identities=22% Similarity=0.209 Sum_probs=156.4
Q ss_pred CCceEEEEecCccccccCcccccCCCCCCEEeCCCCc-------------cccccCccccCCCCccEEE-eecccCcCCC
Q 035904 49 THRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQ-------------FSGTIPSSIFSISTLKILI-LGDNQLSGSF 114 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~~~ 114 (291)
.+.++.|++++|.++ .+|..++.|++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+. .+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L 425 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DL 425 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HH
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hh
Confidence 456778889999887 788899999999999997664 3456677788888888888 5555432 22
Q ss_pred chhh-----hh--cCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCc
Q 035904 115 PSFI-----IS--NMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGA 187 (291)
Q Consensus 115 ~~~~-----~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 187 (291)
+... +. ....|++|++++|.++ .+|. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 2110 01 1235999999999998 5775 568999999999999999 778899999999999999999995
Q ss_pred cCccCCCCCCccEEEcCCCcccCCc-cccccCCCCCceEEccCccccCCCCc---cccCCCCCCEEEc
Q 035904 188 IPKEIGNLTKLTELYLGYNKLQGEI-PQDLGNLAELEWLSLPQSFLTGTIPS---SIFNLTSLLELDF 251 (291)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l 251 (291)
+| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+++..+. .+..+++|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 7899999999999999999766 89999999999999999999865442 2334789998864
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=4.9e-18 Score=154.94 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=123.1
Q ss_pred ccCCCCCCEEeCCCCcccccc-CccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccC---------Ccccccc
Q 035904 70 VGNLSSLQTLDLSHNQFSGTI-PSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNY---------NSLSGEL 139 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~---------~~~~~~~ 139 (291)
+..+++|++|++++|.++... ...+..+++|+.|++.+| +.+.....+...+++|++|++.+ +.+++..
T Consensus 285 ~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 285 YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 335677777777777765322 223456777777777777 33222222334577777777732 3444333
Q ss_pred ChhhhccccCccEEEcccccccccCccccc-cCCCCcEEEcc--c----CcCcCc-----cCccCCCCCCccEEEcCCCc
Q 035904 140 PANIFSYLPFLKSLALSANNFHGQIPSTLS-NCKQLQMLSLS--I----NDFTGA-----IPKEIGNLTKLTELYLGYNK 207 (291)
Q Consensus 140 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~ 207 (291)
...+...+++|++|.+..+.++......+. .+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-c
Confidence 333344567777777766666543333333 46777777777 2 333311 111244567777777766 4
Q ss_pred ccCCccccccC-CCCCceEEccCccccCCCCccc-cCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 208 LQGEIPQDLGN-LAELEWLSLPQSFLTGTIPSSI-FNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 208 ~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.+++.....+...+++|+.|++++|+++
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 44333333333 6777888887777654433333 457778888888887754444444455777888888877664
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=4.8e-16 Score=116.26 Aligned_cols=128 Identities=18% Similarity=0.190 Sum_probs=94.4
Q ss_pred CceEEEEecCcccc-ccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEE
Q 035904 50 HRVTALNISYFGLT-GTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAI 128 (291)
Q Consensus 50 ~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 128 (291)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|.. +..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEE
Confidence 46888888888887 67777788888888888888888744 67788888888888888887445554 3678888888
Q ss_pred EccCCccccccChhhhccccCccEEEcccccccccCc---cccccCCCCcEEEcc
Q 035904 129 DCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIP---STLSNCKQLQMLSLS 180 (291)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~ 180 (291)
++++|.+.+......+..+++|++|++++|.+....+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888887732122345577788888888887764433 356677777777664
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=4.8e-17 Score=151.37 Aligned_cols=191 Identities=20% Similarity=0.304 Sum_probs=96.9
Q ss_pred CCCCEEeCCCCccccccCccccCCCCccEEEee-----cccCcCCCchhhhhcCCCccEEEccCCccccccChhhhcccc
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIFSISTLKILILG-----DNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLP 148 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~-----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 148 (291)
+.++.|+|.++.+.. .+..+.....|+.+.+. .|.+ .++...+..++.|+.|++++|.+. .++..++ .++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence 557788888877763 34333333333333322 2222 233444577777888888888777 6776666 777
Q ss_pred CccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEcc
Q 035904 149 FLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 228 (291)
+|++|+|++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..|..+++|++|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 7888888877777 56677777777788888777777 55777777777777777777776 566667777777777777
Q ss_pred CccccCCCCccccCCC-CCCEEEccCCcccccCchHHHhhCccccEEEeecc
Q 035904 229 QSFLTGTIPSSIFNLT-SLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN 279 (291)
Q Consensus 229 ~~~~~~~~~~~l~~~~-~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n 279 (291)
+|.+.+..+..+.... ....+++++|.+.+.+|. .|+.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 7777765555543321 112356777777665543 3445555554
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=3.5e-15 Score=129.43 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=107.4
Q ss_pred eEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEcc
Q 035904 52 VTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131 (291)
Q Consensus 52 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 131 (291)
|+.+.+..+ ++.....+|.++ +|+.+.+.. .+......+|.+|.+|+.+++..|++. .++..+|. ..+|+.+.+.
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeC
Confidence 444444433 333333344443 455555553 343333455556666666666655555 45554444 3555555555
Q ss_pred CCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCccc--
Q 035904 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQ-- 209 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-- 209 (291)
.+ +. .+....|..+++|+.+.+..+ +......+|.. .+|+.+.+. +.+......+|..+++|+.+.+.++.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 33 33 555555555666666665543 23233344444 455555552 2233233445556666666665554432
Q ss_pred ---CCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceee
Q 035904 210 ---GEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFT 282 (291)
Q Consensus 210 ---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 282 (291)
.....+|.++++|+.+.+.+ .+......+|..|++|+.+.+..+ +. .+....+.++ +|+.+++.+|.+.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 12334555555666666553 244344455555566666666443 32 3333334445 5666666655544
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.65 E-value=9.7e-18 Score=152.98 Aligned_cols=112 Identities=18% Similarity=0.142 Sum_probs=72.5
Q ss_pred CCCCcEEEcccCcCcCccCccCC-CCCCccEEEcC--C----CcccCC-----ccccccCCCCCceEEccCccccCCCCc
Q 035904 171 CKQLQMLSLSINDFTGAIPKEIG-NLTKLTELYLG--Y----NKLQGE-----IPQDLGNLAELEWLSLPQSFLTGTIPS 238 (291)
Q Consensus 171 ~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~ 238 (291)
+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++....
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 56666666655555533322232 46778888877 3 344321 112245667888888866 44433333
Q ss_pred cccC-CCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeee
Q 035904 239 SIFN-LTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTG 283 (291)
Q Consensus 239 ~l~~-~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 283 (291)
.+.. +++|++|++++|.+++.....+...+++|+.|++++|++++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 3433 78899999999998876666665669999999999998853
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=2.2e-15 Score=117.63 Aligned_cols=128 Identities=23% Similarity=0.272 Sum_probs=64.8
Q ss_pred EEEEecCccccccCcccccCCCCCCEEeCCCCccccccCc-cccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEcc
Q 035904 53 TALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPS-SIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCN 131 (291)
Q Consensus 53 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 131 (291)
+.++++++.++ .+|..+. ++|++|++++|++.+..+. .+..+++|++|++++|.+++..|. .+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECC
Confidence 34555565554 3343232 2566666666666533332 255555555555555555522222 22445555555555
Q ss_pred CCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCccc
Q 035904 132 YNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
+|.+ ....+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 87 ~N~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKI-------------------------KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCC-------------------------CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcC-------------------------CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5544 4333444445555555555555555444555555555666666665554
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=4.3e-15 Score=115.98 Aligned_cols=108 Identities=30% Similarity=0.411 Sum_probs=51.6
Q ss_pred CccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEcc
Q 035904 149 FLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 228 (291)
++++|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444444 233444444445555555544444334444455555555555555544444444455555555555
Q ss_pred CccccCCCCccccCCCCCCEEEccCCccc
Q 035904 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 229 ~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
+|.+....+..+..+++|+.|++++|++.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55554333334444555555555555543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.4e-15 Score=113.72 Aligned_cols=130 Identities=20% Similarity=0.240 Sum_probs=102.6
Q ss_pred ccCccEEEccccccc-ccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceE
Q 035904 147 LPFLKSLALSANNFH-GQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWL 225 (291)
Q Consensus 147 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 225 (291)
.+++++|++++|.+. ...+..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888888888876 45666777888888888888888754 667888899999999999886677777778899999
Q ss_pred EccCccccCC-CCccccCCCCCCEEEccCCcccccCc--hHHHhhCccccEEEeec
Q 035904 226 SLPQSFLTGT-IPSSIFNLTSLLELDFSNNSLTGSFR--DDLCQRIPLLQRFYMTN 278 (291)
Q Consensus 226 ~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~~L~~L~l~~ 278 (291)
++++|.+.+. .+..+..+++|++|++++|.+++..+ ...+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999988753 23677888999999999999985544 14555689999998864
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=4.5e-15 Score=114.26 Aligned_cols=133 Identities=29% Similarity=0.290 Sum_probs=111.2
Q ss_pred ccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcC
Q 035904 125 IRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLG 204 (291)
Q Consensus 125 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 204 (291)
.+.++++++++. .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 468889999887 677544 3689999999999886666677889999999999999986666778899999999999
Q ss_pred CCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCc
Q 035904 205 YNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFR 261 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~ 261 (291)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999987666677888999999999999986666667788999999999999886544
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=8.6e-15 Score=112.65 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=105.0
Q ss_pred ccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEc
Q 035904 100 LKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSL 179 (291)
Q Consensus 100 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 179 (291)
.+.++++++++. .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 467888888887 677543 478899999999887 666666678889999999999888666666788889999999
Q ss_pred ccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCC
Q 035904 180 SINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGT 235 (291)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 235 (291)
++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99988866666778888999999999988865555667788899999999887644
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=1.6e-14 Score=125.22 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=175.1
Q ss_pred CceEEEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEE
Q 035904 50 HRVTALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAID 129 (291)
Q Consensus 50 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 129 (291)
..|+.+.+.. .+......+|..|++|+.+++..|+++......|. +.+|+.+.+..+ +. .++..+|.++++|+.+.
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEE
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEe
Confidence 4688888876 56656677899999999999999999844444554 789999999854 65 78888889999999999
Q ss_pred ccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCc-----CccCccCCCCCCccEEEcC
Q 035904 130 CNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFT-----GAIPKEIGNLTKLTELYLG 204 (291)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~ 204 (291)
+..+ +. .+....|.. .+|+.+.+.. .+......+|..+++|+.+.+.++.+. ...+..|.++++|+.+.+.
T Consensus 233 l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 233 IPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred cCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 9875 55 777777866 7899999954 466567788999999999999887764 3556789999999999999
Q ss_pred CCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCc-cccEEEeecceee
Q 035904 205 YNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIP-LLQRFYMTNNHFT 282 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~-~L~~L~l~~n~l~ 282 (291)
+ .++.....+|.++.+|+.+.+..+ +......+|..+ +|+.+++++|.+. .++...+.+++ +++.|++..+.+.
T Consensus 309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHHHH
Confidence 5 466455678999999999999665 665667888899 9999999999877 44444445464 7889999877543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.5e-14 Score=112.93 Aligned_cols=125 Identities=23% Similarity=0.371 Sum_probs=63.6
Q ss_pred EEEecCccccccCcccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC
Q 035904 54 ALNISYFGLTGTISSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133 (291)
Q Consensus 54 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 133 (291)
.++++++.++ .+|..+ .++|++|++++|.++ .+|..|..+++|+.|++++|.++ .++...+..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCC
Confidence 4555566555 333322 245666666666665 45555666666666666666665 444433455555555555555
Q ss_pred ccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcC
Q 035904 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 184 (291)
.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 555 33433344445555555555544433333344444444444444433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.5e-14 Score=111.28 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=57.9
Q ss_pred cCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccE
Q 035904 121 NMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTE 200 (291)
Q Consensus 121 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 200 (291)
.+.+|++|++++|.+. .++ .+....++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4455555555555554 332 2222223555555555555432 34444455555555555554332222344445555
Q ss_pred EEcCCCcccCCccc--cccCCCCCceEEccCccccCCCCc----cccCCCCCCEEEccCCcc
Q 035904 201 LYLGYNKLQGEIPQ--DLGNLAELEWLSLPQSFLTGTIPS----SIFNLTSLLELDFSNNSL 256 (291)
Q Consensus 201 L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~i 256 (291)
|++++|.++ .+|. .+..+++|+.|++++|.+.. .+. .+..+++|+.|++++|.+
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 555555443 2232 34444444444444444442 222 133444444444444433
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=3.7e-14 Score=108.97 Aligned_cols=129 Identities=17% Similarity=0.254 Sum_probs=73.1
Q ss_pred CCceEEEEecCccccccCcccccCC-CCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccE
Q 035904 49 THRVTALNISYFGLTGTISSQVGNL-SSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRA 127 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 127 (291)
..++++|++++|.++. ++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+. .+|..++..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 3456667777766663 333 3333 3667777776666632 45666666666666666665 445444456666666
Q ss_pred EEccCCccccccCh-hhhccccCccEEEcccccccccCcc----ccccCCCCcEEEcccCcC
Q 035904 128 IDCNYNSLSGELPA-NIFSYLPFLKSLALSANNFHGQIPS----TLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 128 L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~ 184 (291)
|++++|.+. .++. ..+..+++|++|++++|.+.. .+. .+..+++|+.|+++.|..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 666666664 4443 223355666666666666552 232 245555555555555544
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=2.8e-16 Score=123.30 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=51.2
Q ss_pred cccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhcccc
Q 035904 69 QVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLP 148 (291)
Q Consensus 69 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 148 (291)
.+..+++|++|++++|++++ +| .+..+++|+.|++++|.+. .+|..+ ..+++|++|++++|.+. .++ . +..++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L~~L~L~~N~l~-~l~-~-~~~l~ 115 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIA-SLS-G-IEKLV 115 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHCSEEEEEEEECC-CHH-H-HHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcCCEEECcCCcCC-cCC-c-cccCC
Confidence 45555566666665555553 33 4555555555555555554 444322 34445555555555544 222 1 22444
Q ss_pred CccEEEcccccccccCc-cccccCCCCcEEEcccCcC
Q 035904 149 FLKSLALSANNFHGQIP-STLSNCKQLQMLSLSINDF 184 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~ 184 (291)
+|++|++++|.+....+ ..+..+++|++|++++|.+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 45555555444432111 2333444444444444443
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=3.3e-16 Score=122.90 Aligned_cols=134 Identities=21% Similarity=0.290 Sum_probs=82.6
Q ss_pred cCCCCCCEEeCCCCccccccCc------cccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhh
Q 035904 71 GNLSSLQTLDLSHNQFSGTIPS------SIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIF 144 (291)
Q Consensus 71 ~~l~~L~~L~l~~~~~~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 144 (291)
.....++.++++.+.+.+..|. .+..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .++.. +
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~-~l~~~-~ 89 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIK-KIENL-D 89 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEEC-SCSSH-H
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCcc-cccch-h
Confidence 3344555555555555544443 6777777778888777776 455 3367777777777777776 55543 3
Q ss_pred ccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccC-ccCCCCCCccEEEcCCCcccCC
Q 035904 145 SYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIP-KEIGNLTKLTELYLGYNKLQGE 211 (291)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 211 (291)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+.
T Consensus 90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 355677777777777663 23 45666667777777766653222 3455666666666666666533
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=1e-14 Score=125.32 Aligned_cols=136 Identities=20% Similarity=0.199 Sum_probs=59.7
Q ss_pred CCCCEEeCCCCccccccCcccc-----CCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhh----
Q 035904 74 SSLQTLDLSHNQFSGTIPSSIF-----SISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIF---- 144 (291)
Q Consensus 74 ~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---- 144 (291)
+.|++|++++|.++......+. ..++|+.|++++|.+++.....+...+++|++|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566666666666532222221 1245666666666554222222223344555666666655422222211
Q ss_pred ccccCccEEEccccccccc----CccccccCCCCcEEEcccCcCcCc----cCccCCCCCCccEEEcCCCccc
Q 035904 145 SYLPFLKSLALSANNFHGQ----IPSTLSNCKQLQMLSLSINDFTGA----IPKEIGNLTKLTELYLGYNKLQ 209 (291)
Q Consensus 145 ~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 209 (291)
...++|++|++++|.+... ++..+..+++|++|++++|.+.+. ++..+...++|+.|++++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1234455555555554321 222233444455555555544321 1223333344444444444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.3e-12 Score=99.69 Aligned_cols=108 Identities=26% Similarity=0.230 Sum_probs=92.2
Q ss_pred CccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEcc
Q 035904 149 FLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228 (291)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 228 (291)
..++++++++.+. .+|..+ .+.|++|++++|.+.+..+..|..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999888 455544 3789999999999997778889999999999999999987666778899999999999
Q ss_pred CccccCCCCccccCCCCCCEEEccCCccccc
Q 035904 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLTGS 259 (291)
Q Consensus 229 ~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 259 (291)
+|.+.+..+..+..+++|++|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999877777788999999999999998754
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.3e-12 Score=98.34 Aligned_cols=107 Identities=27% Similarity=0.281 Sum_probs=92.4
Q ss_pred CccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEc
Q 035904 124 SIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYL 203 (291)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 203 (291)
..++++++++++. .+|..+ .++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578999999998 777655 378999999999999777888999999999999999999777777889999999999
Q ss_pred CCCcccCCccccccCCCCCceEEccCccccC
Q 035904 204 GYNKLQGEIPQDLGNLAELEWLSLPQSFLTG 234 (291)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 234 (291)
++|.+++..+..+..+++|++|++++|.+..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 9999987666678899999999999998863
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=7.7e-15 Score=126.05 Aligned_cols=170 Identities=19% Similarity=0.166 Sum_probs=115.5
Q ss_pred CCCccEEEeecccCcCCCchhh---hh-cCCCccEEEccCCccccccChhhhccccCccEEEcccccccccCcccc----
Q 035904 97 ISTLKILILGDNQLSGSFPSFI---IS-NMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTL---- 168 (291)
Q Consensus 97 l~~L~~L~l~~~~~~~~~~~~~---~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---- 168 (291)
++.|+.|++++|.++......+ +. ..++|++|++++|.++......+...+++|++|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578888898888763222211 11 236888999998888755555555566788889998888764333333
Q ss_pred -ccCCCCcEEEcccCcCcCc----cCccCCCCCCccEEEcCCCcccCC----ccccccCCCCCceEEccCccccCCC---
Q 035904 169 -SNCKQLQMLSLSINDFTGA----IPKEIGNLTKLTELYLGYNKLQGE----IPQDLGNLAELEWLSLPQSFLTGTI--- 236 (291)
Q Consensus 169 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~--- 236 (291)
...+.|++|++++|.+... ++..+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457888999988887642 334456678888999998888643 2455666778899999988887532
Q ss_pred -CccccCCCCCCEEEccCCcccccCchHHHh
Q 035904 237 -PSSIFNLTSLLELDFSNNSLTGSFRDDLCQ 266 (291)
Q Consensus 237 -~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~ 266 (291)
+..+..+++|++|+|++|.|++.....+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 233445688889999998887655544443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.5e-12 Score=99.67 Aligned_cols=106 Identities=24% Similarity=0.265 Sum_probs=90.2
Q ss_pred ccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccC
Q 035904 150 LKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQ 229 (291)
Q Consensus 150 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 229 (291)
-+.++++++.+. .+|..+. +.|++|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 468899998887 4555543 7899999999999977788899999999999999999866566678899999999999
Q ss_pred ccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 230 SFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 230 ~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
|.+.+..+..+..+++|++|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99986666678889999999999999874
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=4.9e-12 Score=96.83 Aligned_cols=106 Identities=25% Similarity=0.258 Sum_probs=91.6
Q ss_pred ccEEEccCCccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcC
Q 035904 125 IRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLG 204 (291)
Q Consensus 125 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 204 (291)
-+.++++++++. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 368999999987 7887653 789999999999997778889999999999999999997666678899999999999
Q ss_pred CCcccCCccccccCCCCCceEEccCccccC
Q 035904 205 YNKLQGEIPQDLGNLAELEWLSLPQSFLTG 234 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 234 (291)
+|.+++..+..+..+++|++|++++|.+..
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999986655668899999999999998873
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=7.9e-11 Score=100.17 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=60.3
Q ss_pred EEEccCC-ccccccChhhhccccCccEEEccc-ccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcC
Q 035904 127 AIDCNYN-SLSGELPANIFSYLPFLKSLALSA-NNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLG 204 (291)
Q Consensus 127 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 204 (291)
.++++++ +++ .+|. +..+.+|++|+|++ |.+....+..|..+++|+.|++++|.+.+..+..|..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 555 4555 33556666666664 66665555556666666666666666665555566666666666666
Q ss_pred CCcccCCccccccCCCCCceEEccCcccc
Q 035904 205 YNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 205 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
+|.+++..+..+..++ |+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6666643333443333 666666666554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=8e-11 Score=100.14 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=88.0
Q ss_pred cEEEcccc-cccccCccccccCCCCcEEEccc-CcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEcc
Q 035904 151 KSLALSAN-NFHGQIPSTLSNCKQLQMLSLSI-NDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLP 228 (291)
Q Consensus 151 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 228 (291)
..+++.++ .+. .+|. +..+++|+.|++++ |.+....+..|..+++|+.|++++|.+++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677776 777 4676 88899999999996 99987777889999999999999999998778889999999999999
Q ss_pred CccccCCCCccccCCCCCCEEEccCCcccc
Q 035904 229 QSFLTGTIPSSIFNLTSLLELDFSNNSLTG 258 (291)
Q Consensus 229 ~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 258 (291)
+|.+.+..+..+..++ |+.|+|++|++..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999866555555555 9999999999874
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.08 E-value=3.8e-09 Score=91.42 Aligned_cols=108 Identities=9% Similarity=0.169 Sum_probs=67.7
Q ss_pred cccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCCC
Q 035904 168 LSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLL 247 (291)
Q Consensus 168 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 247 (291)
|..+..|+.+.+..+... .....|..+++|+.+.+.. .++.....+|.++.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 444555555555443322 3344555666666666643 233233456777888888888654 4445566778888888
Q ss_pred EEEccCCcccccCchHHHhhCccccEEEeecce
Q 035904 248 ELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNH 280 (291)
Q Consensus 248 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~ 280 (291)
++.+..+ +. .+....+.+|.+|+.+++.++.
T Consensus 338 ~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 8888654 44 5666666778888888887653
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=1.6e-10 Score=98.56 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=42.1
Q ss_pred CCCccEEEcCCCcccCCcccccc---CCCCCceEEccCccccCCC----CccccCCCCCCEEEccCCcccccCchHHHhh
Q 035904 195 LTKLTELYLGYNKLQGEIPQDLG---NLAELEWLSLPQSFLTGTI----PSSIFNLTSLLELDFSNNSLTGSFRDDLCQR 267 (291)
Q Consensus 195 ~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~ 267 (291)
+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.+.+.. +..+..+++|++|++++|.+++.....+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 55666666666655432222221 3456666666666655422 2222345667777777776664443333321
Q ss_pred CccccEEEeecce
Q 035904 268 IPLLQRFYMTNNH 280 (291)
Q Consensus 268 ~~~L~~L~l~~n~ 280 (291)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 2345555543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=9.8e-11 Score=99.86 Aligned_cols=202 Identities=13% Similarity=0.238 Sum_probs=132.2
Q ss_pred CCceEEEEecCccccc-c-------CcccccCCCCCCEEeCCCCccc---------cccCccccCCCCccEEEeecccCc
Q 035904 49 THRVTALNISYFGLTG-T-------ISSQVGNLSSLQTLDLSHNQFS---------GTIPSSIFSISTLKILILGDNQLS 111 (291)
Q Consensus 49 ~~~l~~L~l~~~~~~~-~-------~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~l~~l~~L~~L~l~~~~~~ 111 (291)
..+++.|.+....+.+ . +......+++|+.|.+...... +.+...+..+|+|+.|++++|...
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3468888887665442 1 1233556889999988654321 123455567899999999988422
Q ss_pred CCCchhhhhcCCCccEEEccCCccccccChhhh-ccccCccEEEcccc--ccc-c----cCcccc--ccCCCCcEEEccc
Q 035904 112 GSFPSFIISNMSSIRAIDCNYNSLSGELPANIF-SYLPFLKSLALSAN--NFH-G----QIPSTL--SNCKQLQMLSLSI 181 (291)
Q Consensus 112 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~--~~~-~----~~~~~l--~~~~~L~~L~l~~ 181 (291)
.++. + .+++|++|.+..+.+.......+. ..+|+|++|.|..+ ... . .+...+ ..+++|++|++.+
T Consensus 186 -~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 186 -SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp -BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEES
T ss_pred -eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCC
Confidence 3443 2 488999999998887644433333 36899999998532 111 0 111122 2578999999999
Q ss_pred CcCcCccCccC---CCCCCccEEEcCCCcccCCc----cccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCC
Q 035904 182 NDFTGAIPKEI---GNLTKLTELYLGYNKLQGEI----PQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNN 254 (291)
Q Consensus 182 ~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 254 (291)
|.+.+..+..+ ..+++|+.|+++.|.+++.. +..+..+++|+.|++++|.+++.....+...- ..+++++.+
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS 340 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence 88864322211 35789999999999987543 33334568999999999988755444444311 466888887
Q ss_pred c
Q 035904 255 S 255 (291)
Q Consensus 255 ~ 255 (291)
.
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 6
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=5.6e-09 Score=90.33 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=123.5
Q ss_pred cccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccc----------
Q 035904 67 SSQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLS---------- 136 (291)
Q Consensus 67 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---------- 136 (291)
..+|..|++|+.+.+..+- .......|.++.+|+.+.+..+ +. .++..++.++..|+.+.+..+...
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeehhhcccCC
Confidence 4457788888888886543 2244566777778887777654 33 455555566666665554433211
Q ss_pred ----------cccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCC
Q 035904 137 ----------GELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206 (291)
Q Consensus 137 ----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 206 (291)
..+....+..+..++.+.+..+... .....+..+..++.+......+ ....|..+.+|+.+.+..+
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc
Confidence 0233334445555665555444322 3344555555666555544322 2345667778888887654
Q ss_pred cccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecc
Q 035904 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN 279 (291)
Q Consensus 207 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n 279 (291)
++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +. .+....+.+|++|+.+++..+
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 43344567788888888888654 55455677888888888888766 44 455556667888888888754
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=1.2e-08 Score=88.25 Aligned_cols=207 Identities=13% Similarity=0.101 Sum_probs=129.8
Q ss_pred ccccCCCCCCEEeCCCCccccccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCCccccccChhhhccc
Q 035904 68 SQVGNLSSLQTLDLSHNQFSGTIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYL 147 (291)
Q Consensus 68 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 147 (291)
.+|..+..++...... .......+|.++.+|+.+.+.++- . .++..++..+.+|+.+.+..+ +. .+....|..+
T Consensus 134 ~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~ 207 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAEC 207 (394)
T ss_dssp TTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTC
T ss_pred eeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ce-EeCchhhccc
Confidence 3455554433333222 222345678899999999997653 3 677778899999999999766 44 6666777778
Q ss_pred cCccEEEccccccc---------------------ccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCC
Q 035904 148 PFLKSLALSANNFH---------------------GQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYN 206 (291)
Q Consensus 148 ~~L~~L~l~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 206 (291)
..|+.+.+..+... ......+..+..++.+.+..+... .....|..+..++.+.....
T Consensus 208 ~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 208 ILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp TTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSS
T ss_pred cccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCce
Confidence 88777766543221 011123334444555444433322 33344555555555555443
Q ss_pred cccCCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeecceeeeeCC
Q 035904 207 KLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHFTGSIP 286 (291)
Q Consensus 207 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 286 (291)
.+. ...+..+.+|+.+.+.++ +......+|..|.+|+.+++..+ +. .+....+.+|.+|+.+.+..+ ++ .|+
T Consensus 287 ~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~ 358 (394)
T 4fs7_A 287 IVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIG 358 (394)
T ss_dssp EEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EEC
T ss_pred eec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-Eeh
Confidence 321 245667788898888765 44455677889999999999765 44 555666677999999999876 65 566
Q ss_pred CCC
Q 035904 287 HNL 289 (291)
Q Consensus 287 ~~~ 289 (291)
+.-
T Consensus 359 ~~a 361 (394)
T 4fs7_A 359 ANA 361 (394)
T ss_dssp TTT
T ss_pred HHH
Confidence 543
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.91 E-value=2.6e-08 Score=86.12 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=89.7
Q ss_pred hhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCC
Q 035904 142 NIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAE 221 (291)
Q Consensus 142 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 221 (291)
..|..+.+|+.+.+..+... ....++..+..|+.+.+.. .+.......|.++.+|+.+.+..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34556667777777554332 4556788899999999864 444456678999999999999865 44345678999999
Q ss_pred CceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhCccccEEEeeccee
Q 035904 222 LEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNNHF 281 (291)
Q Consensus 222 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~l 281 (291)
|+.+.+..+ ++.....+|.+|.+|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCCCCE
Confidence 999999754 665667889999999999999875431 1223478899988876644
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.78 E-value=2.7e-07 Score=79.24 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=68.9
Q ss_pred ccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCccccCCCCccccCCCCC
Q 035904 167 TLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSL 246 (291)
Q Consensus 167 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 246 (291)
.+..+..|+.+.+..+ +.......|..+.+|+.+.+..+ +......+|.++.+|+.+.+.++.+......+|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444555555555443 22233445666667777766543 332334567778888888888777766666778888888
Q ss_pred CEEEccCCcccccCchHHHhhCccccEEEeecc
Q 035904 247 LELDFSNNSLTGSFRDDLCQRIPLLQRFYMTNN 279 (291)
Q Consensus 247 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n 279 (291)
+.+.+..+ +. .+....+.+|.+|+.+.+..+
T Consensus 313 ~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 313 SSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred CEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 88888654 33 455555666788888877543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=9.9e-09 Score=79.13 Aligned_cols=71 Identities=8% Similarity=0.155 Sum_probs=37.8
Q ss_pred CcccccCCCCCCEEeCCCC-cccc----ccCccccCCCCccEEEeecccCcCCCc---hhhhhcCCCccEEEccCCccc
Q 035904 66 ISSQVGNLSSLQTLDLSHN-QFSG----TIPSSIFSISTLKILILGDNQLSGSFP---SFIISNMSSIRAIDCNYNSLS 136 (291)
Q Consensus 66 ~~~~~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~ 136 (291)
+...+...+.|++|+|++| .+.. .+...+...++|++|++++|.+.+.-. ...+...+.|++|++++|.+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3444556677777777776 6652 233444555666666666666542111 111234455666666665554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=9.1e-09 Score=79.32 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=53.2
Q ss_pred hccccCccEEEcccc-ccccc----CccccccCCCCcEEEcccCcCcCc----cCccCCCCCCccEEEcCCCcccCC---
Q 035904 144 FSYLPFLKSLALSAN-NFHGQ----IPSTLSNCKQLQMLSLSINDFTGA----IPKEIGNLTKLTELYLGYNKLQGE--- 211 (291)
Q Consensus 144 ~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~--- 211 (291)
....+.|++|++++| .+... +...+...+.|++|++++|.+.+. +...+...+.|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 335566666666666 55421 223344455566666666655422 122233344555555555555432
Q ss_pred -ccccccCCCCCceEEc--cCccccCCC----CccccCCCCCCEEEccCCccc
Q 035904 212 -IPQDLGNLAELEWLSL--PQSFLTGTI----PSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 212 -~~~~~~~~~~L~~L~l--~~~~~~~~~----~~~l~~~~~L~~L~l~~n~i~ 257 (291)
+...+...+.|++|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2233334444555555 444444321 122233344555555555443
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=4.3e-08 Score=74.12 Aligned_cols=101 Identities=11% Similarity=0.069 Sum_probs=64.1
Q ss_pred CCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCc-ccCCccccccCC----CCCceEEccCcc-ccCCCCccccCCCC
Q 035904 172 KQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNK-LQGEIPQDLGNL----AELEWLSLPQSF-LTGTIPSSIFNLTS 245 (291)
Q Consensus 172 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~l~~~~~ 245 (291)
..|++|+++++.+++..-..+..+++|++|++++|. +++.....+... ++|++|++++|. +++.....+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467778888777765544556777888888888874 554444444443 368888888874 66555555667788
Q ss_pred CCEEEccCCc-ccccC--chHHHhhCcccc
Q 035904 246 LLELDFSNNS-LTGSF--RDDLCQRIPLLQ 272 (291)
Q Consensus 246 L~~L~l~~n~-i~~~~--~~~~~~~~~~L~ 272 (291)
|++|++++|+ +++.. ...+...+|+++
T Consensus 141 L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 141 LKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8888888874 44321 223334456543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=4.6e-08 Score=73.97 Aligned_cols=87 Identities=13% Similarity=0.096 Sum_probs=69.3
Q ss_pred CCCccEEEcCCCcccCCccccccCCCCCceEEccCcc-ccCCCCccccCC----CCCCEEEccCCc-ccccCchHHHhhC
Q 035904 195 LTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSF-LTGTIPSSIFNL----TSLLELDFSNNS-LTGSFRDDLCQRI 268 (291)
Q Consensus 195 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~----~~L~~L~l~~n~-i~~~~~~~~~~~~ 268 (291)
-..|++|++++|.+++.....+.++++|+.|++++|. +++.....+... ++|++|++++|. |++.....+. .+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 3579999999999987767778899999999999995 665444455543 579999999995 8876555554 59
Q ss_pred ccccEEEeecce-ee
Q 035904 269 PLLQRFYMTNNH-FT 282 (291)
Q Consensus 269 ~~L~~L~l~~n~-l~ 282 (291)
++|+.|++++|+ ++
T Consensus 139 ~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCCEEEEESCTTCC
T ss_pred CCCCEEECCCCCCCC
Confidence 999999999984 54
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.37 E-value=5.5e-06 Score=71.02 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=127.1
Q ss_pred CcccccCCCCCCEEeCCCCcccc------------ccCccccCCCCccEEEeecccCcCCCchhhhhcCCCccEEEccCC
Q 035904 66 ISSQVGNLSSLQTLDLSHNQFSG------------TIPSSIFSISTLKILILGDNQLSGSFPSFIISNMSSIRAIDCNYN 133 (291)
Q Consensus 66 ~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 133 (291)
....+..+..++.+.+....... .....+..+..+..+.+..... .+....+....+|+.+.+..+
T Consensus 150 ~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~ 227 (379)
T 4h09_A 150 KDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG 227 (379)
T ss_dssp CSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT
T ss_pred ccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee--EEeecccccccccceeeeccc
Confidence 34567888999988877653321 1222344455566655544322 333334466778888887654
Q ss_pred ccccccChhhhccccCccEEEcccccccccCccccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCCCcccCCcc
Q 035904 134 SLSGELPANIFSYLPFLKSLALSANNFHGQIPSTLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGYNKLQGEIP 213 (291)
Q Consensus 134 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 213 (291)
+. .+....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ +.......|..+.+|+.+.+.++.++....
T Consensus 228 -~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~ 303 (379)
T 4h09_A 228 -VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEP 303 (379)
T ss_dssp -CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred -ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehh
Confidence 33 556666778888888888665 44455667788888888888654 333455678888889998888877765556
Q ss_pred ccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCcccccCchHHHhhC
Q 035904 214 QDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLTGSFRDDLCQRI 268 (291)
Q Consensus 214 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~ 268 (291)
.+|.++.+|+.+.+..+ ++.....+|.+|.+|+++.+..+ +. .+....+.++
T Consensus 304 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c 355 (379)
T 4h09_A 304 RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGS 355 (379)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTS
T ss_pred hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCC
Confidence 77888888998888654 55455677888888888888654 33 3333444434
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=7.6e-07 Score=72.23 Aligned_cols=80 Identities=28% Similarity=0.386 Sum_probs=51.9
Q ss_pred CCCCccEEEcCCCcccC--CccccccCCCCCceEEccCccccCCCCccccCCC--CCCEEEccCCcccccCc------hH
Q 035904 194 NLTKLTELYLGYNKLQG--EIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLT--SLLELDFSNNSLTGSFR------DD 263 (291)
Q Consensus 194 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~------~~ 263 (291)
.+++|+.|++++|.+++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.++ ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45667777777777664 2334555667777777777777643 2223233 78888888888886554 23
Q ss_pred HHhhCccccEEE
Q 035904 264 LCQRIPLLQRFY 275 (291)
Q Consensus 264 ~~~~~~~L~~L~ 275 (291)
+...+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 455688888876
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=9.4e-07 Score=71.69 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=87.1
Q ss_pred ccccceeEeecCCCceEEEEecC---ccccccCc------------------------ccccCCCCCCE--EeCCCCccc
Q 035904 37 VCSWIGITCDVSTHRVTALNISY---FGLTGTIS------------------------SQVGNLSSLQT--LDLSHNQFS 87 (291)
Q Consensus 37 ~c~~~~~~~~~~~~~l~~L~l~~---~~~~~~~~------------------------~~~~~l~~L~~--L~l~~~~~~ 87 (291)
.|.|.|+.|+....++..+...+ ..+.+.++ ..+...+.|+. ++++.|...
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~ 156 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS 156 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH
T ss_pred HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHHH
Confidence 46788888886556776655533 12211111 01222334444 566666433
Q ss_pred ---cccCccccCCCCccEEEeecccCcC--CCchhhhhcCCCccEEEccCCccccccChhhhccccCccEEEcccccccc
Q 035904 88 ---GTIPSSIFSISTLKILILGDNQLSG--SFPSFIISNMSSIRAIDCNYNSLSGELPANIFSYLPFLKSLALSANNFHG 162 (291)
Q Consensus 88 ---~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 162 (291)
..+.....++++|+.|++++|++.+ .++. .+..+++|++|++++|.+.+.-....+..+ +|++|++.+|.+..
T Consensus 157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 157 CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 1122222468899999999999984 2333 347899999999999998743121222233 89999999998875
Q ss_pred cCc-------cccccCCCCcEEEc
Q 035904 163 QIP-------STLSNCKQLQMLSL 179 (291)
Q Consensus 163 ~~~-------~~l~~~~~L~~L~l 179 (291)
..+ ..+..+++|+.|+-
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ccCcchhHHHHHHHHCcccCeECC
Confidence 333 34678899998873
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=2.9e-05 Score=59.68 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=41.1
Q ss_pred cccCccEEEcccc-cccc----cCccccccCCCCcEEEcccCcCcCc----cCccCCCCCCccEEEcCCCcccCC----c
Q 035904 146 YLPFLKSLALSAN-NFHG----QIPSTLSNCKQLQMLSLSINDFTGA----IPKEIGNLTKLTELYLGYNKLQGE----I 212 (291)
Q Consensus 146 ~~~~L~~L~l~~~-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~ 212 (291)
.-+.|++|++.++ .+.. .+...+...+.|+.|++++|.+.+. +.+.+..-+.|+.|++++|.+.+. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4456666666654 4432 1233444555666666666665432 122233334566666666655432 2
Q ss_pred cccccCCCCCceEEccC
Q 035904 213 PQDLGNLAELEWLSLPQ 229 (291)
Q Consensus 213 ~~~~~~~~~L~~L~l~~ 229 (291)
..++...+.|+.|++++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 23333444455555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=0.00017 Score=55.47 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=31.8
Q ss_pred ccCCCCCCEEeCCCC-cccc----ccCccccCCCCccEEEeecccCcCCC---chhhhhcCCCccEEEccCCcccc
Q 035904 70 VGNLSSLQTLDLSHN-QFSG----TIPSSIFSISTLKILILGDNQLSGSF---PSFIISNMSSIRAIDCNYNSLSG 137 (291)
Q Consensus 70 ~~~l~~L~~L~l~~~-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~ 137 (291)
+..-+.|++|+|+++ .+.. .+...+.....|+.|++++|.+.+.- -..++..-+.|++|+++.|.+.+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 344455666666553 4441 22334444455666666655554211 01112334455555555555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0024 Score=45.61 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=44.6
Q ss_pred cEEEcCCCccc-CCccccccCCCCCceEEccCccccCCCCccccCCCCCCEEEccCCccc
Q 035904 199 TELYLGYNKLQ-GEIPQDLGNLAELEWLSLPQSFLTGTIPSSIFNLTSLLELDFSNNSLT 257 (291)
Q Consensus 199 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~ 257 (291)
..++.+++.++ ..+|..+ ..+|++|+|++|.++...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888776 2455433 257999999999998777778888999999999999875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0067 Score=43.25 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=44.4
Q ss_pred cEEEcccCcCc-CccCccCCCCCCccEEEcCCCcccCCccccccCCCCCceEEccCcccc
Q 035904 175 QMLSLSINDFT-GAIPKEIGNLTKLTELYLGYNKLQGEIPQDLGNLAELEWLSLPQSFLT 233 (291)
Q Consensus 175 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (291)
..++.+++.++ ..+|..+ .++++.|+|++|.++...+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777888776 2445443 347999999999999666678888999999999999764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.53 E-value=6.5 Score=26.04 Aligned_cols=15 Identities=7% Similarity=0.359 Sum_probs=6.2
Q ss_pred hhhccccCccEEEcc
Q 035904 142 NIFSYLPFLKSLALS 156 (291)
Q Consensus 142 ~~~~~~~~L~~L~l~ 156 (291)
..|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 334444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.37 E-value=11 Score=24.97 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=17.3
Q ss_pred cccccCCCCcEEEcccCcCcCccCccCCCCCCccEEEcCC
Q 035904 166 STLSNCKQLQMLSLSINDFTGAIPKEIGNLTKLTELYLGY 205 (291)
Q Consensus 166 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 205 (291)
.+|.+|.+|+.+.+-.+--. ....+|.+|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 34445555555544433221 3334444555555544443
Done!