BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035907
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05462|RL27_PEA 60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1
Length = 135
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/126 (61%), Positives = 86/126 (68%), Gaps = 28/126 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
MV FLKPNKAVILLQGR A +KAVI+K+FDDGTRE+P GHCLVA IK
Sbjct: 1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60
Query: 48 ---------------NYQHLMPTCYTLDVDLKEVVTTNSLQSKDKKVTACEETKKHLEEK 92
NYQHLMPT YTLDVDLK+ V + LQSKDKKVTA +ETKK LEE+
Sbjct: 61 KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120
Query: 93 FKTGKN 98
FKTGKN
Sbjct: 121 FKTGKN 126
>sp|P51419|RL273_ARATH 60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2
SV=2
Length = 135
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/126 (59%), Positives = 83/126 (65%), Gaps = 28/126 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
MV FLK NKAVILLQGR A +KAVI+KSFDDG R+RP GHCLVA +K
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 48 ---------------NYQHLMPTCYTLDVDLKEVVTTNSLQSKDKKVTACEETKKHLEEK 92
NYQHLMPT YTLDVDLKEV T ++LQSKDKKV A +E K LEE+
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120
Query: 93 FKTGKN 98
FKTGKN
Sbjct: 121 FKTGKN 126
>sp|Q8LCL3|RL272_ARATH 60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2
SV=2
Length = 135
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 83/126 (65%), Gaps = 28/126 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
MV FLK NKAVILLQGR A +KAVI+KSFDDGT +R GHCLVA +K
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 48 ---------------NYQHLMPTCYTLDVDLKEVVTTNSLQSKDKKVTACEETKKHLEEK 92
NYQHLMPT YTLDVDLKEV T ++L+SKDKKVTA +E K LEE+
Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120
Query: 93 FKTGKN 98
FKTGKN
Sbjct: 121 FKTGKN 126
>sp|Q9SKX8|RL271_ARATH 60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2
SV=1
Length = 135
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 79/126 (62%), Gaps = 28/126 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
MV +KP KAVILLQGR +KAVI+KSFDDGT E+ GHCLVA +K
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 48 ---------------NYQHLMPTCYTLDVDLKEVVTTNSLQSKDKKVTACEETKKHLEEK 92
NYQH+MPT YTLD+DLK VV+ +++ SKDKKVTA +E K EE+
Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120
Query: 93 FKTGKN 98
FKTGKN
Sbjct: 121 FKTGKN 126
>sp|P41101|RL27_SOLTU 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1
Length = 138
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 81/130 (62%), Gaps = 33/130 (25%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M FLKPNKAVILLQG+ A RKAVI+++FD+GTR+RP GHCLVA
Sbjct: 1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60
Query: 45 ------RIK------NYQHLMPTCYTLDVDL----KEVVTTNSLQSKDKKVTACEETKKH 88
R+K NY H+MPT YTLD DL K+VV + LQ++DKKVTA TK
Sbjct: 61 KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 119
Query: 89 LEEKFKTGKN 98
L E+FKTGKN
Sbjct: 120 LAERFKTGKN 129
>sp|Q02984|RL27_PYRST 60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1
Length = 134
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 70/126 (55%), Gaps = 29/126 (23%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
MV FLK K V++L GR A +KAVI+++FDDGT RP GH LV ++
Sbjct: 1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQK 60
Query: 48 ---------------NYQHLMPTCYTLDVDLKEVVTTNSLQSKDKKVTACEETKKHLEEK 92
NY HLMPT YTLDVD K V + ++ KKV A +E KK LEEK
Sbjct: 61 KQAKKSTLKTFIKTVNYNHLMPTRYTLDVDFKG-VAAEAQENPTKKVEARKECKKLLEEK 119
Query: 93 FKTGKN 98
FKTGKN
Sbjct: 120 FKTGKN 125
>sp|P61359|RL27_HIPCM 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2
Length = 136
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR A RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKAFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKSKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3
Length = 136
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
K+KTGKN
Sbjct: 121 KYKTGKN 127
>sp|Q7ZV82|RL27_DANRE 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3
Length = 136
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR A RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2
Length = 136
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR + RKAVI+K+ DDGT +RP H LVA
Sbjct: 1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K VV + + K A E K EE
Sbjct: 61 KIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3
Length = 136
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 65/127 (51%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M F+KP K V++L GR A RKAVI+K+ DDGT +RP H LV+
Sbjct: 1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ NY HLMPT Y++D+ L K +V + + K A E K EE
Sbjct: 61 KVAKRSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P0C2H7|RL27B_YEAST 60S ribosomal protein L27-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27B PE=1 SV=1
Length = 136
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
M FLK K ++++GR A +K VI+K D+G++ P GH LVA I+
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAK 60
Query: 48 ---------------NYQHLMPTCYTLDVD-LKEVVTTNSLQSKDKKVTACEETKKHLEE 91
NY HL+PT YTLDV+ K VV+T + + ++ A + KK EE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 92 KFKTGKN 98
+ + GKN
Sbjct: 121 RHQAGKN 127
>sp|P0C2H6|RL27A_YEAST 60S ribosomal protein L27-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL27A PE=1 SV=1
Length = 136
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
M FLK K ++++GR A +K VI+K D+G++ P GH LVA I+
Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAK 60
Query: 48 ---------------NYQHLMPTCYTLDVD-LKEVVTTNSLQSKDKKVTACEETKKHLEE 91
NY HL+PT YTLDV+ K VV+T + + ++ A + KK EE
Sbjct: 61 KVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEE 120
Query: 92 KFKTGKN 98
+ + GKN
Sbjct: 121 RHQAGKN 127
>sp|O14388|RL27A_SCHPO 60S ribosomal protein L27-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27a PE=2 SV=2
Length = 136
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
MV LKP K ++ +GR A +K VI+++ D G++ P GH +VA
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 45 ------RIK------NYQHLMPTCYTLDVD-LKEVVTTNSLQSKDKKVTACEETKKHLEE 91
R+K NY HLMPT Y L++D LK ++T ++ + ++ A + KK EE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 92 KFKTGKN 98
K+++GK+
Sbjct: 121 KYQSGKS 127
>sp|Q9P843|RL27_CANAX 60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1
Length = 136
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
M F+K K I+++GR A +K VI+K D+GT+ P H +VA I+
Sbjct: 1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAK 60
Query: 48 ---------------NYQHLMPTCYTLDVD-LKEVVTTNSLQSKDKKVTACEETKKHLEE 91
NY HLMPT Y+LDV+ K VT+ +L+ ++ A + KK EE
Sbjct: 61 KVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEE 120
Query: 92 KFKTGKN 98
K + GKN
Sbjct: 121 KHQAGKN 127
>sp|O74538|RL27B_SCHPO 60S ribosomal protein L27-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl27b PE=3 SV=1
Length = 136
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
MV LKP K ++ +GR A +K VI+++ D G++ P GH +VA
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 45 ------RIK------NYQHLMPTCYTLDVD-LKEVVTTNSLQSKDKKVTACEETKKHLEE 91
R+K NY HLMPT Y L++D LK +VT + ++ A + K EE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 92 KFKTGKN 98
K++TGK+
Sbjct: 121 KYQTGKS 127
>sp|Q55BE6|RL27_DICDI 60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3
SV=1
Length = 144
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 38/132 (28%)
Query: 4 FLKPNKAVILLQGRNASRKAVIMKSFDDGT--RERPNGHCLVA----------------- 44
F+KP + VILL G+ A RKAV++K+FDD T + RP GHCLVA
Sbjct: 5 FIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKT 64
Query: 45 -----------RIKNYQHLMPTCYTLD-------VDLKEVVTTNSLQSKDKKVTACEETK 86
++ NY H+MPT Y + LK VT S Q + T K
Sbjct: 65 ILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVAKRAHTRL-AVK 123
Query: 87 KHLEEKFKTGKN 98
K E K K GK+
Sbjct: 124 KIFEAKHKAGKS 135
>sp|P91914|RL27_CAEEL 60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2
SV=1
Length = 136
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 29/127 (22%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVA---------------- 44
M +KP K V++L+G+ A RKAV++K D+G +R H ++A
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 45 ------------RIKNYQHLMPTCYTLDVDL-KEVVTTNSLQSKDKKVTACEETKKHLEE 91
++ +Y HL+PT Y++DV K + +L++ KK A E K EE
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEE 120
Query: 92 KFKTGKN 98
++KTGKN
Sbjct: 121 RYKTGKN 127
>sp|P0DJ19|RL27_TETTH 60S ribosomal protein L27 OS=Tetrahymena thermophila GN=RPL27 PE=1
SV=1
Length = 144
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 31/125 (24%)
Query: 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------------- 47
M FLK + VILLQGR A +KAVI+KS +DGT++R GH LVA ++
Sbjct: 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSK 60
Query: 48 ---------------NYQHLMPTCYTLD--VDLKEVVTTNSLQSKDKKVTACEETKKHLE 90
N H+MPT Y++ D KE+V + +++ + K + KK
Sbjct: 61 KIQKRTSVKPFIKYVNLNHIMPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFV 119
Query: 91 EKFKT 95
EK++T
Sbjct: 120 EKYRT 124
>sp|O67914|UPP_AQUAE Uracil phosphoribosyltransferase OS=Aquifex aeolicus (strain VF5)
GN=upp PE=1 SV=1
Length = 208
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 52 LMPTCYTLDVDLKEVVTTNSLQSKDKKVTACEETKKHLEEKFK 94
++ T TL+V L+E++ + L+ K A E K +EEKFK
Sbjct: 130 MLATGGTLEVALREILKHSPLKVKSVHAIAAPEGLKRIEEKFK 172
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans
GN=unc-89 PE=1 SV=3
Length = 8081
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 2 VTFLKPNKAVILLQGRNA------SRKAVIMKSFDDGTRERPNGHCLVARIKN--YQHLM 53
+TFLKP K + +G NA + K I+K + +G +PN ++ + + YQ ++
Sbjct: 4683 ITFLKPLKDQSITEGENAEFSVETNTKPRIVKWYKNGQEIKPNSRFIIEQKTDTKYQLVI 4742
Query: 54 PTCYTLDVDLKEVVTTNS 71
D D ++V N+
Sbjct: 4743 KNAVRDDADTYKIVLENT 4760
>sp|Q7VKU5|DUSC_HAEDU tRNA-dihydrouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusC PE=3 SV=1
Length = 325
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 35 ERPNGHCLVARIKNYQHLMPTCYTLDVDLKEVVTT 69
ER +G VARIK + H + Y VDL ++V T
Sbjct: 267 ERDSGFYHVARIKQWLHYLDKAYPEAVDLFQIVKT 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,579,329
Number of Sequences: 539616
Number of extensions: 1256953
Number of successful extensions: 3421
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3344
Number of HSP's gapped (non-prelim): 63
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)