Query 035907
Match_columns 105
No_of_seqs 104 out of 341
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 12:33:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_a 60S ribosomal protein L 100.0 2E-55 6.8E-60 320.2 -6.6 105 1-105 1-134 (136)
2 3izc_a 60S ribosomal protein R 100.0 5E-55 1.7E-59 318.1 -6.3 105 1-105 1-134 (136)
3 4a18_N RPL27, ribosomal protei 100.0 1.1E-49 3.8E-54 292.3 4.8 104 1-105 1-142 (144)
4 4a18_E RPL6; ribosome, eukaryo 99.9 1.9E-22 6.6E-27 153.4 7.5 67 1-74 41-119 (191)
5 2joy_A 50S ribosomal protein L 99.8 1.5E-20 5E-25 128.7 5.9 54 1-62 1-64 (96)
6 3iz5_N 60S ribosomal protein L 99.8 1.2E-19 4.2E-24 131.5 5.3 55 2-63 4-64 (134)
7 3izc_N 60S ribosomal protein R 99.7 5.8E-18 2E-22 123.2 5.5 55 2-63 12-74 (138)
8 3j21_5 50S ribosomal protein L 99.6 1.3E-16 4.4E-21 107.1 5.5 54 1-62 1-63 (83)
9 4a18_F RPL14; ribosome, eukary 99.6 1.7E-16 5.7E-21 114.1 5.3 55 2-63 4-65 (126)
10 3izc_G 60S ribosomal protein R 99.6 5.6E-16 1.9E-20 116.6 5.4 80 4-91 33-124 (176)
11 3iz5_G 60S ribosomal protein L 99.6 6.7E-16 2.3E-20 119.4 5.1 66 4-76 74-151 (219)
12 2zjr_R 50S ribosomal protein L 94.6 0.034 1.2E-06 38.7 3.8 47 4-56 15-62 (115)
13 3v2d_Y 50S ribosomal protein L 94.2 0.031 1.1E-06 38.8 2.9 47 4-56 6-53 (110)
14 3r8s_U 50S ribosomal protein L 94.1 0.054 1.9E-06 37.0 4.0 46 4-56 3-49 (102)
15 3j21_U 50S ribosomal protein L 93.7 0.074 2.5E-06 37.4 4.1 37 5-47 46-82 (121)
16 1vq8_T 50S ribosomal protein L 93.7 0.082 2.8E-06 37.2 4.3 37 5-47 43-79 (120)
17 2zkr_t 60S ribosomal protein L 93.4 0.081 2.8E-06 38.3 4.1 37 5-47 49-86 (145)
18 2ftc_N Mitochondrial ribosomal 92.2 0.15 5.3E-06 34.4 3.8 41 9-55 2-43 (96)
19 3u5e_Y L33, YL33, 60S ribosoma 92.0 0.16 5.6E-06 36.0 3.9 37 5-47 50-86 (127)
20 3iz5_Y 60S ribosomal protein L 91.9 0.18 6.3E-06 36.8 4.2 37 5-47 49-85 (150)
21 2do3_A Transcription elongatio 91.7 0.17 5.8E-06 32.6 3.4 30 2-31 15-44 (69)
22 4a17_S RPL26, 60S ribosomal pr 91.6 0.22 7.7E-06 35.7 4.4 37 5-47 49-85 (135)
23 3bbo_W Ribosomal protein L24; 88.3 0.084 2.9E-06 40.0 -0.2 45 5-55 69-114 (191)
24 2ckk_A KIN17; beta barrel, rib 74.6 2.3 7.9E-05 29.5 3.0 24 6-29 72-95 (127)
25 1nz9_A Transcription antitermi 63.9 14 0.00047 21.6 4.5 27 5-31 5-31 (58)
26 3kbg_A 30S ribosomal protein S 55.2 8.7 0.0003 29.2 3.0 24 5-28 139-162 (213)
27 3p8b_B Transcription antitermi 54.0 19 0.00066 24.6 4.4 29 4-32 91-119 (152)
28 3j20_E 30S ribosomal protein S 52.3 10 0.00035 29.3 3.0 24 5-28 179-202 (243)
29 2xzm_W 40S ribosomal protein S 48.5 13 0.00044 29.1 3.1 23 5-27 177-199 (260)
30 3iz6_D 40S ribosomal protein S 47.8 13 0.00045 29.1 3.1 24 5-28 175-198 (265)
31 2jvv_A Transcription antitermi 44.2 38 0.0013 23.7 4.8 28 4-31 127-154 (181)
32 2e6z_A Transcription elongatio 38.1 25 0.00087 20.9 2.7 26 5-30 8-33 (59)
33 2e70_A Transcription elongatio 31.5 46 0.0016 21.1 3.2 25 7-31 20-44 (71)
34 3u5c_E RP5, S7, YS6, 40S ribos 29.6 13 0.00045 29.0 0.4 24 5-28 175-198 (261)
35 1khi_A HEX1; membrane sealing, 25.1 98 0.0033 22.8 4.4 45 4-56 39-87 (176)
No 1
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=100.00 E-value=2e-55 Score=320.23 Aligned_cols=105 Identities=62% Similarity=0.974 Sum_probs=69.0
Q ss_pred CcccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------------------------CCcee
Q 035907 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------------------------NYQHL 52 (105)
Q Consensus 1 m~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------------------------N~nHl 52 (105)
|+|||+||+|||+|+|||||||||||+++||||+||||+|||||||+ |||||
T Consensus 1 M~K~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHl 80 (136)
T 3iz5_a 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHL 80 (136)
T ss_dssp CCSSCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHH
T ss_pred CcccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecce
Confidence 99999999999999999999999999999999999999999999999 99999
Q ss_pred eeeceEeecCCcccc-CcccccChhhHHHHHHHHHHHHHHHHhcCCceeeeeCC
Q 035907 53 MPTCYTLDVDLKEVV-TTNSLQSKDKKVTACEETKKHLEEKFKTGKNLGSLLSS 105 (105)
Q Consensus 53 ~pTry~vdi~~k~~v-~~~~~~d~~~k~~akk~~k~~feer~k~gknkwfF~k~ 105 (105)
|||||+|||+|++++ +.|.|+||++|++|+++++..|||+|++|||+|||++.
T Consensus 81 mPTRY~vdi~lK~~v~~~d~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kL 134 (136)
T 3iz5_a 81 MPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKNRWFFTKL 134 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC-----------------------------------
T ss_pred eccceEeecchhheecCHHHhcChhHhHHHHHHHHHHHHHHHhcCCCceeeeec
Confidence 999999999999888 99999999999999999999999999999999999873
No 2
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=100.00 E-value=5e-55 Score=318.13 Aligned_cols=105 Identities=42% Similarity=0.689 Sum_probs=64.8
Q ss_pred CcccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------------------------CCcee
Q 035907 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------------------------NYQHL 52 (105)
Q Consensus 1 m~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------------------------N~nHl 52 (105)
|+|||+||+|||+|+|||||||||||+++||||+||||+|||||||+ |||||
T Consensus 1 M~Kf~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHl 80 (136)
T 3izc_a 1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHL 80 (136)
T ss_dssp ----CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHH
T ss_pred CCccccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccce
Confidence 89999999999999999999999999999999999999999999999 99999
Q ss_pred eeeceEeecC-CccccCcccccChhhHHHHHHHHHHHHHHHHhcCCceeeeeCC
Q 035907 53 MPTCYTLDVD-LKEVVTTNSLQSKDKKVTACEETKKHLEEKFKTGKNLGSLLSS 105 (105)
Q Consensus 53 ~pTry~vdi~-~k~~v~~~~~~d~~~k~~akk~~k~~feer~k~gknkwfF~k~ 105 (105)
|||||+|||+ ++++|+.|.|+||++|++|+++++..|||+|++|||+|||++.
T Consensus 81 mPTRy~vdi~~~K~~v~~d~~~dp~~k~~a~~~~k~~feeryk~gKnkwfF~kL 134 (136)
T 3izc_a 81 LPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKL 134 (136)
T ss_dssp HHHHHHHHHHHHHHHHSCC-----------------------------------
T ss_pred eeeeeeEcccccccccCHHHhcChhHhHHHHHHHHHHHHHHHhcCCccEeeeec
Confidence 9999999999 4899999999999999999999999999999999999999873
No 3
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=100.00 E-value=1.1e-49 Score=292.28 Aligned_cols=104 Identities=40% Similarity=0.593 Sum_probs=100.7
Q ss_pred CcccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------------------------CCcee
Q 035907 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------------------------NYQHL 52 (105)
Q Consensus 1 m~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------------------------N~nHl 52 (105)
|++|++||+|||||+|||||||||||+++|+||+||||+||||+||+ |||||
T Consensus 1 M~kf~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl 80 (144)
T 4a18_N 1 MAKFLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHI 80 (144)
T ss_dssp -CCCCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGE
T ss_pred CCccccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeE
Confidence 99999999999999999999999999999999999999999999976 99999
Q ss_pred eeeceEe--ecCCccccCcccccChhhHHHHHHHHHHHHHHHH--------hcCCceeeeeCC
Q 035907 53 MPTCYTL--DVDLKEVVTTNSLQSKDKKVTACEETKKHLEEKF--------KTGKNLGSLLSS 105 (105)
Q Consensus 53 ~pTry~v--di~~k~~v~~~~~~d~~~k~~akk~~k~~feer~--------k~gknkwfF~k~ 105 (105)
|||||+| ||+|+++|++|.|+| ++|++|+++++..|||+| ++|+|+|||++.
T Consensus 81 ~pTry~v~~di~lK~~v~~d~~~~-~~k~~a~~~~k~~feery~~~~~~~kk~gknkwfF~kL 142 (144)
T 4a18_N 81 MPTRYSVKELCDFKELVKEDKIKN-NAKSEVRDTLKKVFVEKYRTINPEEKSASHTKFFFSKL 142 (144)
T ss_dssp EEEEEECSTTCCHHHHSCHHHHHT-TCHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHCCC
T ss_pred EEeeEEeeccCchhhccCHHHhhh-hHhHHHHHHHHHHHHHHhhhccccccccCCceEeeeec
Confidence 9999999 999999999999999 999999999999999999 999999999973
No 4
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=99.87 E-value=1.9e-22 Score=153.37 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=60.5
Q ss_pred CcccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------CCceeeeeceEeecC-Cc-cccC
Q 035907 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------NYQHLMPTCYTLDVD-LK-EVVT 68 (105)
Q Consensus 1 m~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------N~nHl~pTry~vdi~-~k-~~v~ 68 (105)
|.++|+||+|||+|+|||||+|||+||++|+ +++||+|+. |++|+|||||+|||+ ++ ..+|
T Consensus 41 lr~si~pGtVlIiL~Gr~~GKrvV~LKql~s-------gllLVtGP~~vn~vplrrvn~~~vi~TstkvDis~vki~~~~ 113 (191)
T 4a18_E 41 LRNDIAPGTVLILLAGRFRGKRVVFLKQLKS-------GLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFE 113 (191)
T ss_dssp CCTTCCTTEEEEECSSTTTTBEEEEEEECTT-------SCEEEECCTTTSSCCSEEECGGGEEEEEEECCCTTCCGGGCC
T ss_pred hhccccCCCEEEEeccccCCCEEEEEEecCC-------CeEEEecCccccCCceEEEeeeeEEeeeeEeecccccccccC
Confidence 5679999999999999999999999999999 789999976 999999999999998 64 4488
Q ss_pred cccccC
Q 035907 69 TNSLQS 74 (105)
Q Consensus 69 ~~~~~d 74 (105)
+++|+.
T Consensus 114 d~YF~k 119 (191)
T 4a18_E 114 DDYFGR 119 (191)
T ss_dssp GGGSCC
T ss_pred HHHhcc
Confidence 888874
No 5
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.81 E-value=1.5e-20 Score=128.75 Aligned_cols=54 Identities=33% Similarity=0.491 Sum_probs=51.5
Q ss_pred CcccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------CCceeeeeceEeecC
Q 035907 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------NYQHLMPTCYTLDVD 62 (105)
Q Consensus 1 m~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------N~nHl~pTry~vdi~ 62 (105)
|+ +++||+||++++||||||++|||+++|+ +|+||+|++ |++||+||+|++|++
T Consensus 1 M~-~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~-------~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~ 64 (96)
T 2joy_A 1 MP-AIEVGRICVKVKGREAGSKCVIVDIIDD-------NFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQ 64 (96)
T ss_dssp CC-SSSTTEEEECSSSSTTCCEEEEEEECSS-------SCEEEECCTTTTCCCCEEESCSSCEEEEEECCCC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEeCC-------CEEEEECCcccCCcCCEEEchHHEEEeeEEEeCC
Confidence 77 9999999999999999999999999999 689999996 999999999999965
No 6
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=99.78 E-value=1.2e-19 Score=131.49 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=52.3
Q ss_pred cccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc------CCceeeeeceEeecCC
Q 035907 2 VTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------NYQHLMPTCYTLDVDL 63 (105)
Q Consensus 2 ~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~------N~nHl~pTry~vdi~~ 63 (105)
.+|++||+||++++|||||++||||+++|+ +||||.|++ |++|||||+|.+||+.
T Consensus 4 ~rfvevGRVV~i~~Gr~aGk~avIV~iiD~-------~rvLVdG~~v~Rk~~n~khL~lT~~~v~i~r 64 (134)
T 3iz5_N 4 KRFVEIGRVALVNYGKDYGRLVVIVDVVDQ-------NRALVDAPDMVRCQINFKRLSLTDIKIDIKR 64 (134)
T ss_dssp CCSCCSSEEEECSCCSSSCCEEEEEEECSS-------SEEEEEETTEEEEEEECTTSEEEEEECCCCS
T ss_pred ccccccCeEEEEeeCCCCCCEEEEEEEcCC-------CeEEEeCCCccceeechhHeEEeCEEEeccC
Confidence 479999999999999999999999999999 799999986 9999999999999984
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=99.71 E-value=5.8e-18 Score=123.24 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=52.4
Q ss_pred cccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc--------CCceeeeeceEeecCC
Q 035907 2 VTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK--------NYQHLMPTCYTLDVDL 63 (105)
Q Consensus 2 ~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~--------N~nHl~pTry~vdi~~ 63 (105)
.+|++||+||++++|||||++||||+++|+ +++||.|+. |++||+||+|.++|+.
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD~-------~rVLVDGp~~gV~R~~~n~khL~lT~~~v~i~r 74 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQ-------KKVLIDGPKAGVPRQAINLGQVVLTPLTFALPR 74 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECSS-------SEEEEECSSSSCCCEEEECSSSEEEEEECCCCS
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEecC-------CEEEEEcCCCCcccceechhHeEEecEEEEccC
Confidence 579999999999999999999999999999 799999986 9999999999999984
No 8
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.65 E-value=1.3e-16 Score=107.09 Aligned_cols=54 Identities=24% Similarity=0.446 Sum_probs=49.5
Q ss_pred CcccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc---------CCceeeeeceEeecC
Q 035907 1 MVTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK---------NYQHLMPTCYTLDVD 62 (105)
Q Consensus 1 m~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~---------N~nHl~pTry~vdi~ 62 (105)
|. +++||+||++++|||||+++|||+++|+ +|+||+|+. |.+||.||.+.++++
T Consensus 1 m~-~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~-------~~vlV~g~~~~~v~rk~kn~khl~lt~~~i~~~ 63 (83)
T 3j21_5 1 MP-AIDVGRIAVVIAGRRAGQKVVVVDIIDK-------NFVLVTGAGLNKVKRRRMNIKHIEPLPQKIDIP 63 (83)
T ss_dssp ---CCCTTEEEECSSSSSSCCCEEEEEECSS-------SCEEEECCTTTTCCCEEESCSSCEEEEEECCCC
T ss_pred CC-ccccCEEEEEeecCCCCCEEEEEEEcCC-------CEEEEECCccCccCCeEechHHEEEeeEEEECC
Confidence 56 9999999999999999999999999999 799999985 999999999998865
No 9
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=99.64 E-value=1.7e-16 Score=114.12 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=52.1
Q ss_pred cccccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc------CCceeeeeceEee-cCC
Q 035907 2 VTFLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK------NYQHLMPTCYTLD-VDL 63 (105)
Q Consensus 2 ~k~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~------N~nHl~pTry~vd-i~~ 63 (105)
-+|+++||||+++.|+|||+.||||+.+|+ ++|||.|+. |++||+||+|.++ |+-
T Consensus 4 ~rfvevGRVv~i~~G~~aGklavIVdIID~-------nrvLVdGp~V~Rq~~n~k~l~LT~~~v~~i~r 65 (126)
T 4a18_F 4 NKFVQVGRVVYINYGADKGKLAVIVNIINQ-------NRILIDGEHIVRQVIPIRRVHLTKFQIDNVEL 65 (126)
T ss_dssp CCEEETTEEEEECSSTTTTEEEEEEEEETT-------TEEEEEETTEEEEEEEGGGEEEEEEECTTCCT
T ss_pred ccceecceEEEEccCCccCCEEEEEEEecC-------CeEEEeCCCcccceeeccceEEcceeccccCC
Confidence 479999999999999999999999999999 799999986 9999999999998 984
No 10
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=99.60 E-value=5.6e-16 Score=116.65 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=63.8
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------CCceeeeeceEeecC-Cc-cccCccc
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------NYQHLMPTCYTLDVD-LK-EVVTTNS 71 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------N~nHl~pTry~vdi~-~k-~~v~~~~ 71 (105)
.|.||+|+|+|+|||+|+++|++|++++ +.+||+|+. |++|+++|..+|||+ ++ +.+|+++
T Consensus 33 Si~pGtvlIil~Gr~~GkrvVfLKql~s-------glllVTGP~~lNgvplrR~~q~~vIaTstkidis~vki~~l~D~Y 105 (176)
T 3izc_G 33 SLVPGTVLILLAGRFRGKRVVYLKHLED-------NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEY 105 (176)
T ss_dssp HCCCCSCEECCSSSSSCCCBEEEEESSS-------SSEEEECCCSSSCCCCEEESSSSCEECSCCCSSSSCCCSSCCCSS
T ss_pred cCCCCCEEEEeccccCCCEEEEEEecCC-------CeEEEecCceecCCcceeeecceEEeeeeeeecccccccccCHHH
Confidence 5889999999999999999999999999 569999987 999999999999998 44 6688888
Q ss_pred ccChhhHHHHHHHHHHHHHH
Q 035907 72 LQSKDKKVTACEETKKHLEE 91 (105)
Q Consensus 72 ~~d~~~k~~akk~~k~~fee 91 (105)
|+...+ .+.+++-...|.+
T Consensus 106 F~k~k~-~k~k~~E~eiF~~ 124 (176)
T 3izc_G 106 FAKEKL-TKKEKKEANLFPE 124 (176)
T ss_dssp HHHHHH-HHHHHHHHHHHHH
T ss_pred hhhhhc-cccccchhhhccc
Confidence 874332 2233333455533
No 11
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=99.59 E-value=6.7e-16 Score=119.45 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=58.4
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc----------CCceeeeeceEeecC-Cc-cccCccc
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK----------NYQHLMPTCYTLDVD-LK-EVVTTNS 71 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~----------N~nHl~pTry~vdi~-~k-~~v~~~~ 71 (105)
.+.||+|||+|+||++|+++|+|+++|+ +.+||+|+. |++|+++|..+|||+ ++ +.+|+++
T Consensus 74 si~pGtVlIil~Gr~~GKrvVfLkqL~s-------gllLVtGP~~lNgVplrR~~qk~viaTstkIdIs~Vki~~l~D~Y 146 (219)
T 3iz5_G 74 TITPGTVLILLAGRYMGKRVVFLKQLQS-------GLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKY 146 (219)
T ss_dssp HCSCCSCEECSSSSSSCCEECEEEESSS-------SSEEECCCCSSSCCCCEEESSSSCEECSCCCSCSSCCCSSCCCSS
T ss_pred cccCCCEEEEeccccCCcEEEEEEecCC-------CeEEEcCCccccCCccEEechhhEEecceEeecCccccccccHHH
Confidence 5899999999999999999999999999 569999986 999999999999998 43 6688888
Q ss_pred ccChh
Q 035907 72 LQSKD 76 (105)
Q Consensus 72 ~~d~~ 76 (105)
|+...
T Consensus 147 F~k~k 151 (219)
T 3iz5_G 147 FAREK 151 (219)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 87433
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=94.57 E-value=0.034 Score=38.73 Aligned_cols=47 Identities=15% Similarity=0.360 Sum_probs=39.4
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc-CCceeeeec
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK-NYQHLMPTC 56 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~-N~nHl~pTr 56 (105)
-++.|--|+|++|++.|+.+-|++.+.+. +.++|-|+. -..|.-|+.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~------~~V~VEGvN~~kkh~kp~~ 62 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRD------QKVVVEGVNVITKNVKPSM 62 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTT------TEEEESSSCBCCCCCCTTS
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEECCC------CEEEEeCcEeEEEecCCCc
Confidence 47889999999999999999999998664 679999998 446776664
No 13
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=94.17 E-value=0.031 Score=38.77 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=38.8
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEecccC-Cceeeeec
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIKN-YQHLMPTC 56 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~N-~nHl~pTr 56 (105)
-++.|--|+|++|++.|+.+-|++.+.+. +.++|-|+.- ..|.-|+.
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~------~~ViVEGvN~~kkh~kp~~ 53 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKK------YAVIVEGVNIVKKAVRVSP 53 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGG------TEEEETTSSEEEEECCSSS
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCC------CEEEEeCEEEEEEEeCCCc
Confidence 37889899999999999999999998763 5799999983 35776665
No 14
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=94.12 E-value=0.054 Score=37.04 Aligned_cols=46 Identities=20% Similarity=0.431 Sum_probs=38.3
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc-CCceeeeec
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK-NYQHLMPTC 56 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~-N~nHl~pTr 56 (105)
-++.|--|+|++|++.|+...|++.+.+ +.++|-|+. --.|.-|+.
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~-------~~ViVeGvN~~kkh~kp~~ 49 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS-------GKVIVEGINLVKKHQKPVP 49 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT-------TEEEETTCSEEEEEECCCS
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC-------CEEEEeCeEEEEeccccCc
Confidence 3678888999999999999999999887 469999997 445776665
No 15
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.69 E-value=0.074 Score=37.43 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=32.6
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK 47 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~ 47 (105)
++.|--|+|++|++.|+.+.|++.+.+. +.++|-||.
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~------~~V~VEgvn 82 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLKR------YRIYVEGAT 82 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETTT------TEEEETTCE
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEecC------CEEEEeCeE
Confidence 6788889999999999999999998654 679999987
No 16
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=93.66 E-value=0.082 Score=37.18 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=32.7
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK 47 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~ 47 (105)
++.|-.|+|++|.|.|+.+-|++.+.+. +.++|-|+.
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~------~~V~VEgvn 79 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDK------AVIHVEDVT 79 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTT------TEEEETTCE
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCC------CEEEEeCeE
Confidence 6789999999999999999999998653 679999984
No 17
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=93.44 E-value=0.081 Score=38.34 Aligned_cols=37 Identities=8% Similarity=0.330 Sum_probs=33.0
Q ss_pred ccCcEEEEEeccccCCce-EEEeeecCCCCCCCCCceEEEeccc
Q 035907 5 LKPNKAVILLQGRNASRK-AVIMKSFDDGTRERPNGHCLVARIK 47 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkK-aVivk~~d~gt~~~~y~~~lVaGi~ 47 (105)
++.|-.|+|++|.+.|+. +.|++.+.+. +.++|-|+.
T Consensus 49 IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~------~~V~VEgvn 86 (145)
T 2zkr_t 49 IRKDDEVQVVRGHYKGQQIGKVVQVYRKK------YVIYIERVQ 86 (145)
T ss_dssp CCTTCEEEECSSTTTTCCSEEEEEEETTT------TEEEETTCE
T ss_pred cCCCCEEEEeecCCCCcceeEEEEEECCC------CEEEEeeeE
Confidence 788999999999999999 9999998654 679999987
No 18
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=92.18 E-value=0.15 Score=34.37 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=33.6
Q ss_pred EEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc-CCceeeee
Q 035907 9 KAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK-NYQHLMPT 55 (105)
Q Consensus 9 kVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~-N~nHl~pT 55 (105)
--|+|++|++.|+.+-|++.+.+. +.++|-|+. --.|.-|+
T Consensus 2 D~V~Vi~GkdKGk~GkV~~V~~~~------~~ViVeGvN~~kkh~kp~ 43 (96)
T 2ftc_N 2 DTVEILEGKDAGKQGKVVQVIRQR------NWVVVGGLNTHYRYIGKT 43 (96)
T ss_pred CEEEEeEcCCCCcEEEEEEEECCC------CEEEEeCCEEEEEEcCCC
Confidence 358899999999999999998664 679999997 34677675
No 19
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=91.96 E-value=0.16 Score=36.04 Aligned_cols=37 Identities=11% Similarity=0.273 Sum_probs=32.6
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK 47 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~ 47 (105)
++.|--|+|++|.|.|+.+-|++.+.+. +.++|-||.
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk------~~V~VEgVn 86 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLK------FAVQVDKVT 86 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGG------TEEEEETCE
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCC------CEEEEeCeE
Confidence 5678889999999999999999998764 579999987
No 20
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=91.91 E-value=0.18 Score=36.76 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=32.9
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK 47 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~ 47 (105)
++.|--|+|++|.|.|+.+-|++.+.+. +.++|-||.
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V~~kk------~~V~VEGVN 85 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQVYRRR------WVIHVERIT 85 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEEETTT------TEEEETTCE
T ss_pred cCCCCEEEEeecCCCCccceEEEEEcCC------CEEEEeCcE
Confidence 6778889999999999999999998864 579999987
No 21
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=91.66 E-value=0.17 Score=32.61 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=27.6
Q ss_pred cccccCcEEEEEeccccCCceEEEeeecCC
Q 035907 2 VTFLKPNKAVILLQGRNASRKAVIMKSFDD 31 (105)
Q Consensus 2 ~k~~kpgkVvivL~Gr~aGkKaVivk~~d~ 31 (105)
-|.+++|-=|-|++|||+|.-..||+.-|+
T Consensus 15 rK~F~~GDHVkVi~G~~~getGlVV~v~~d 44 (69)
T 2do3_A 15 RKYFKMGDHVKVIAGRFEGDTGLIVRVEEN 44 (69)
T ss_dssp CSSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred eeeccCCCeEEEeccEEcCceEEEEEEeCC
Confidence 478999999999999999999999998766
No 22
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=91.65 E-value=0.22 Score=35.72 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=32.6
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK 47 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~ 47 (105)
++-|--|+|++|.|.|+.+-|++.+.+. +.++|-||.
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk------~~V~VEgVn 85 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKK------WAIHVEKIS 85 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTT------TEEEETTCC
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCC------CEEEEeCeE
Confidence 5678889999999999999999998764 579999987
No 23
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=88.26 E-value=0.084 Score=39.95 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=36.3
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCCCCCCCCCceEEEeccc-CCceeeee
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDDGTRERPNGHCLVARIK-NYQHLMPT 55 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~gt~~~~y~~~lVaGi~-N~nHl~pT 55 (105)
++.|--|+|++|++.|+.+.|++.+.+. +.++|-|+. -..|.-|+
T Consensus 69 IkKGD~V~VIaGkDKGK~GkVl~V~~k~------~rViVEGVN~vkKH~Kp~ 114 (191)
T 3bbo_W 69 VKVGDTVKVISGGEKGKIGEISKIHKHN------STVIIKDLNFKTKHVKSK 114 (191)
T ss_dssp SCCSSCEEECSSSSTTCCCSCCCCCSSS------CCCCCSSCCCCCCBCCSC
T ss_pred eecCCEEEEeecCCCCceEEEEEEECCC------CEEEEeCCEEEEEecCCc
Confidence 7889999999999999999999988653 568999987 33455554
No 24
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=74.61 E-value=2.3 Score=29.54 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.7
Q ss_pred cCcEEEEEeccccCCceEEEeeec
Q 035907 6 KPNKAVILLQGRNASRKAVIMKSF 29 (105)
Q Consensus 6 kpgkVvivL~Gr~aGkKaVivk~~ 29 (105)
++|.-|+|+.|.|+|..|.++..-
T Consensus 72 ~~g~~V~Iv~G~~rG~~g~L~~id 95 (127)
T 2ckk_A 72 APGKRILVLNGGYRGNEGTLESIN 95 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEE
T ss_pred CCCCEEEEEecccCCcEEEEEEEe
Confidence 468888999999999999999753
No 25
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=63.92 E-value=14 Score=21.56 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=24.0
Q ss_pred ccCcEEEEEeccccCCceEEEeeecCC
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFDD 31 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d~ 31 (105)
+++|-.|-|+.|-++|-.+.|.+...+
T Consensus 5 ~~~Gd~V~V~~Gpf~g~~g~v~~v~~~ 31 (58)
T 1nz9_A 5 FREGDQVRVVSGPFADFTGTVTEINPE 31 (58)
T ss_dssp CCTTCEEEECSGGGTTCEEEEEEEETT
T ss_pred cCCCCEEEEeecCCCCcEEEEEEEcCC
Confidence 678999999999999999999987554
No 26
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=55.21 E-value=8.7 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=21.7
Q ss_pred ccCcEEEEEeccccCCceEEEeee
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKS 28 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~ 28 (105)
+..|.+|++..|+.+|+-++|...
T Consensus 139 f~~G~l~mvtgG~n~GriG~I~~i 162 (213)
T 3kbg_A 139 MQPGNKAYITAGSHVNQTGTISKI 162 (213)
T ss_dssp CSTTCEEEECSSTTTTCEEEEEEE
T ss_pred cCCCCEEEEECCCcceEEEEEEEE
Confidence 568999999999999999999865
No 27
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=53.97 E-value=19 Score=24.64 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.6
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCCC
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDDG 32 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~g 32 (105)
-+++|-.|-|..|-|+|-.|+|.+...+.
T Consensus 91 ~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k 119 (152)
T 3p8b_B 91 GLEPGDLVEVIAGPFKGQKAKVVKIDESK 119 (152)
T ss_dssp TCCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred cCCCCCEEEEeeecCCCCEEEEEEEeCCC
Confidence 36899999999999999999999887664
No 28
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.32 E-value=10 Score=29.31 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.6
Q ss_pred ccCcEEEEEeccccCCceEEEeee
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKS 28 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~ 28 (105)
+..|.+|+|..|+.+|+-++|...
T Consensus 179 f~~G~l~mvtgG~n~GriG~I~~i 202 (243)
T 3j20_E 179 FEKGAYVFVTQGKNVARKGRIVEI 202 (243)
T ss_dssp CCTTCEEEECSSSSTTCEEEEEEC
T ss_pred ccCCCEEEEECCccceEEEEEEEE
Confidence 468999999999999999999865
No 29
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=48.46 E-value=13 Score=29.09 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.5
Q ss_pred ccCcEEEEEeccccCCceEEEee
Q 035907 5 LKPNKAVILLQGRNASRKAVIMK 27 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk 27 (105)
+..|.+|+|..|+.+|+-++|..
T Consensus 177 fe~G~l~mvtgG~n~GriG~I~~ 199 (260)
T 2xzm_W 177 LESGNVCYIQQGNNIGRVGIIQH 199 (260)
T ss_dssp CCSSCEEEECSSTTTTCEEEEEE
T ss_pred ecCCCEEEEECCccceeEEEEEE
Confidence 47899999999999999999996
No 30
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=47.82 E-value=13 Score=29.08 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred ccCcEEEEEeccccCCceEEEeee
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKS 28 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~ 28 (105)
+..|.+|+|..|+.+|+-++|...
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (265)
T 3iz6_D 175 FDVGNVVMVTGGRNTGRVGVIKNR 198 (265)
T ss_dssp CSTTCEEEECSSSSCSCEEEEEEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 467999999999999999999865
No 31
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=44.18 E-value=38 Score=23.69 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.6
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCC
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDD 31 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~ 31 (105)
-+.+|-.|-|+.|-++|-.++|.+..++
T Consensus 127 ~~~~Gd~V~V~~GPf~g~~G~v~~v~~~ 154 (181)
T 2jvv_A 127 LFEPGEMVRVNDGPFADFNGVVEEVDYE 154 (181)
T ss_dssp CCCTTEEEEECSSTTTTEEEEEEEEETT
T ss_pred cCCCCCEEEEeccCCCCcEEEEEEEeCC
Confidence 3679999999999999999999986654
No 32
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.11 E-value=25 Score=20.87 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=23.3
Q ss_pred ccCcEEEEEeccccCCceEEEeeecC
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKSFD 30 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~~d 30 (105)
+.||-.|-|..|=++|-.++|...-.
T Consensus 8 f~~GD~V~V~~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDG 33 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBT
T ss_pred CCCCCEEEEeecCCCCCEEEEEEEeC
Confidence 68999999999999999999987543
No 33
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.50 E-value=46 Score=21.11 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=22.2
Q ss_pred CcEEEEEeccccCCceEEEeeecCC
Q 035907 7 PNKAVILLQGRNASRKAVIMKSFDD 31 (105)
Q Consensus 7 pgkVvivL~Gr~aGkKaVivk~~d~ 31 (105)
.|+-|.|..|.|.|-..+|....|.
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~ 44 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATES 44 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSS
T ss_pred CCCEEEEeccCCCCeEEEEEECCCC
Confidence 6889999999999999998887764
No 34
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=29.56 E-value=13 Score=29.04 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.5
Q ss_pred ccCcEEEEEeccccCCceEEEeee
Q 035907 5 LKPNKAVILLQGRNASRKAVIMKS 28 (105)
Q Consensus 5 ~kpgkVvivL~Gr~aGkKaVivk~ 28 (105)
+..|.+|+|..|+.+|+-++|...
T Consensus 175 fe~Gnl~mvtgG~n~GriG~I~~i 198 (261)
T 3u5c_E 175 FDAGKLVYVTGGRNLGRIGTIVHK 198 (261)
T ss_dssp CCSSCCEEECSSTTTTCBCCCCEE
T ss_pred ccCCCEEEEEcCCcceEEEEEEEE
Confidence 467999999999999999998865
No 35
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=25.07 E-value=98 Score=22.77 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=27.6
Q ss_pred cccCcEEEEEeccccCCceEEEeeecCC-CCCCCCCceEEEeccc---CCceeeeec
Q 035907 4 FLKPNKAVILLQGRNASRKAVIMKSFDD-GTRERPNGHCLVARIK---NYQHLMPTC 56 (105)
Q Consensus 4 ~~kpgkVvivL~Gr~aGkKaVivk~~d~-gt~~~~y~~~lVaGi~---N~nHl~pTr 56 (105)
.|+.|..| +|.|| -|=|+...-+ .|..+ |++-.+|. -+.++-|+.
T Consensus 39 ~LrkG~yv-~IkGr----PCKIveiStS~KtGKH---~ivaiDIFTgkK~edi~Pss 87 (176)
T 1khi_A 39 HIRLGDIL-ILQGR----PCQVIRISTSAATGQH---RYLGVDLFTKQLHEESSFVS 87 (176)
T ss_dssp GCCTTCEE-EETTE----EEEEEEEEECTTTCCE---EEEEEETTTCCEEEEECCEE
T ss_pred heeeCCEE-EECCe----eeEEEEEEccCCCCce---EEEEEEccCCcEeEEecccc
Confidence 57788877 67776 6666666555 45434 44444444 556677777
Done!