Query 035910
Match_columns 364
No_of_seqs 197 out of 1382
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 7.1E-70 1.5E-74 499.8 32.1 292 25-360 2-298 (299)
2 cd02872 GH18_chitolectin_chito 100.0 5.1E-68 1.1E-72 502.9 33.3 318 28-357 1-343 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 1.5E-65 3.2E-70 489.7 33.7 321 27-357 1-394 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 7.7E-65 1.7E-69 476.5 32.5 316 27-355 1-334 (334)
5 KOG2806 Chitinase [Carbohydrat 100.0 3.3E-64 7.2E-69 481.6 33.3 333 24-362 56-405 (432)
6 cd02878 GH18_zymocin_alpha Zym 100.0 2.7E-64 5.8E-69 471.9 30.4 307 27-355 1-345 (345)
7 cd06548 GH18_chitinase The GH1 100.0 8.3E-64 1.8E-68 465.6 30.4 283 28-355 1-322 (322)
8 COG3325 ChiA Chitinase [Carboh 100.0 4.4E-64 9.4E-69 456.8 26.2 333 23-363 35-431 (441)
9 PF00704 Glyco_hydro_18: Glyco 100.0 1.3E-58 2.9E-63 436.3 30.6 320 26-355 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 2.1E-58 4.5E-63 428.9 25.2 290 27-356 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 1.1E-55 2.3E-60 414.4 33.2 296 25-363 35-347 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 2.6E-54 5.5E-59 401.1 25.9 292 27-358 3-308 (313)
13 cd06545 GH18_3CO4_chitinase Th 100.0 2.8E-50 6E-55 362.5 25.7 247 28-363 1-252 (253)
14 cd06549 GH18_trifunctional GH1 100.0 3.7E-50 8E-55 369.3 24.0 289 27-358 1-296 (298)
15 cd00598 GH18_chitinase-like Th 100.0 8.5E-39 1.8E-43 280.7 21.5 172 28-210 1-177 (210)
16 COG3858 Predicted glycosyl hyd 100.0 2E-37 4.3E-42 281.9 18.1 240 88-358 160-413 (423)
17 cd06544 GH18_narbonin Narbonin 100.0 1.6E-34 3.4E-39 257.1 21.9 203 36-263 11-221 (253)
18 cd06546 GH18_CTS3_chitinase GH 100.0 4.8E-33 1E-37 249.2 25.2 198 27-258 1-217 (256)
19 cd02871 GH18_chitinase_D-like 100.0 2E-31 4.4E-36 246.5 25.4 211 26-259 1-248 (312)
20 KOG2091 Predicted member of gl 100.0 2.4E-31 5.1E-36 231.5 17.3 292 26-355 79-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 5.8E-26 1.3E-30 205.0 17.8 196 26-261 1-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 7E-24 1.5E-28 191.5 22.0 240 27-357 2-270 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 1.2E-21 2.7E-26 178.1 17.4 150 45-214 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 4.4E-17 9.5E-22 138.7 18.2 219 22-258 22-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.5 9.5E-13 2.1E-17 118.4 18.7 219 8-259 9-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.7 1.4E-07 3.1E-12 87.8 10.9 157 78-264 51-216 (339)
27 PF02638 DUF187: Glycosyl hydr 98.2 1.4E-05 3E-10 74.0 11.9 130 111-261 134-299 (311)
28 PF03644 Glyco_hydro_85: Glyco 98.2 4.4E-06 9.6E-11 77.0 8.5 155 78-262 47-209 (311)
29 PF13200 DUF4015: Putative gly 98.1 0.0011 2.4E-08 61.0 21.0 98 119-226 125-241 (316)
30 PF11340 DUF3142: Protein of u 97.8 0.00028 6.1E-09 58.8 11.2 85 112-209 22-107 (181)
31 PF14883 GHL13: Hypothetical g 96.0 0.45 9.7E-06 42.9 15.1 195 47-264 30-266 (294)
32 KOG2331 Predicted glycosylhydr 94.9 0.088 1.9E-06 49.5 7.0 84 80-166 118-202 (526)
33 COG1649 Uncharacterized protei 90.8 0.64 1.4E-05 44.5 6.4 91 113-210 181-308 (418)
34 PF14871 GHL6: Hypothetical gl 90.8 1.5 3.3E-05 35.1 7.7 65 73-139 44-132 (132)
35 TIGR02103 pullul_strch alpha-1 90.7 2.5 5.4E-05 44.9 11.1 86 73-167 404-518 (898)
36 cd02810 DHOD_DHPD_FMN Dihydroo 90.3 3.4 7.4E-05 37.7 10.7 73 73-162 83-161 (289)
37 PRK12313 glycogen branching en 89.7 3.9 8.4E-05 42.0 11.5 94 71-167 218-354 (633)
38 PRK12568 glycogen branching en 89.5 4.6 0.0001 41.8 11.7 95 71-167 317-454 (730)
39 TIGR02104 pulA_typeI pullulana 89.5 4.2 9.1E-05 41.5 11.5 86 73-167 229-341 (605)
40 TIGR02402 trehalose_TreZ malto 89.5 3.7 7.9E-05 41.3 10.9 92 71-167 158-270 (542)
41 TIGR01370 cysRS possible cyste 88.1 3.2 6.9E-05 38.5 8.6 55 112-167 142-205 (315)
42 cd02930 DCR_FMN 2,4-dienoyl-Co 87.8 8.9 0.00019 36.3 11.8 65 71-139 75-158 (353)
43 PLN02960 alpha-amylase 87.8 6.5 0.00014 41.4 11.4 94 71-167 464-603 (897)
44 TIGR01515 branching_enzym alph 87.4 8 0.00017 39.6 11.9 95 71-167 204-341 (613)
45 PRK14706 glycogen branching en 87.3 8.1 0.00018 39.7 11.8 95 71-167 215-350 (639)
46 cd04734 OYE_like_3_FMN Old yel 86.8 25 0.00055 33.1 14.2 88 48-139 47-162 (343)
47 PF07172 GRP: Glycine rich pro 86.6 0.29 6.3E-06 36.7 0.8 18 1-18 1-18 (95)
48 COG1306 Uncharacterized conser 86.3 2.4 5.2E-05 38.4 6.4 86 117-213 195-300 (400)
49 PRK05402 glycogen branching en 86.3 8.3 0.00018 40.3 11.5 95 71-167 313-450 (726)
50 PF13199 Glyco_hydro_66: Glyco 83.1 2.5 5.5E-05 42.3 5.8 55 111-165 238-302 (559)
51 TIGR02102 pullulan_Gpos pullul 82.6 13 0.00029 40.5 11.2 85 73-166 555-663 (1111)
52 PRK14581 hmsF outer membrane N 82.4 47 0.001 34.3 14.5 196 46-259 346-611 (672)
53 PRK14705 glycogen branching en 82.0 16 0.00035 40.3 11.6 95 71-167 813-950 (1224)
54 PLN03244 alpha-amylase; Provis 80.1 24 0.00051 36.9 11.4 94 71-167 439-578 (872)
55 PLN02447 1,4-alpha-glucan-bran 79.4 21 0.00046 37.2 11.1 94 71-167 298-438 (758)
56 PRK14582 pgaB outer membrane N 79.2 12 0.00026 38.5 9.1 132 112-259 439-611 (671)
57 PF14885 GHL15: Hypothetical g 78.3 4.7 0.0001 29.1 4.3 43 96-139 32-75 (79)
58 PF14587 Glyco_hydr_30_2: O-Gl 78.2 18 0.00039 34.4 9.3 93 72-167 103-218 (384)
59 PRK10785 maltodextrin glucosid 78.1 29 0.00063 35.4 11.6 57 111-167 303-365 (598)
60 COG3867 Arabinogalactan endo-1 76.7 61 0.0013 29.7 15.7 89 71-164 102-208 (403)
61 cd02803 OYE_like_FMN_family Ol 76.4 6.8 0.00015 36.5 6.2 46 48-95 47-97 (327)
62 cd02931 ER_like_FMN Enoate red 75.7 7.8 0.00017 37.1 6.5 64 72-139 82-171 (382)
63 cd02932 OYE_YqiM_FMN Old yello 75.2 8.4 0.00018 36.2 6.4 47 47-95 46-97 (336)
64 PLN02877 alpha-amylase/limit d 75.0 22 0.00047 38.2 9.8 46 113-165 534-579 (970)
65 PLN02495 oxidoreductase, actin 72.9 51 0.0011 31.6 11.1 57 72-144 97-153 (385)
66 cd06592 GH31_glucosidase_KIAA1 72.4 18 0.00039 33.4 7.8 33 110-142 134-166 (303)
67 cd04733 OYE_like_2_FMN Old yel 71.8 10 0.00022 35.7 6.1 67 71-141 80-172 (338)
68 PRK10550 tRNA-dihydrouridine s 71.5 23 0.0005 32.9 8.3 94 88-207 62-168 (312)
69 cd04740 DHOD_1B_like Dihydroor 71.4 37 0.0008 31.1 9.7 59 87-162 88-153 (296)
70 TIGR00737 nifR3_yhdG putative 71.4 36 0.00078 31.6 9.7 42 85-143 59-100 (319)
71 PRK07259 dihydroorotate dehydr 70.0 40 0.00087 31.0 9.6 58 88-162 91-156 (301)
72 cd06591 GH31_xylosidase_XylS X 69.6 31 0.00067 32.1 8.8 33 110-142 128-160 (319)
73 PRK07565 dihydroorotate dehydr 69.5 37 0.0008 31.8 9.3 73 72-162 86-164 (334)
74 cd04747 OYE_like_5_FMN Old yel 69.0 25 0.00054 33.4 8.0 68 71-141 76-167 (361)
75 PF00724 Oxidored_FMN: NADH:fl 68.9 80 0.0017 29.7 11.5 127 47-185 49-227 (341)
76 COG4724 Endo-beta-N-acetylgluc 68.8 8.8 0.00019 36.2 4.7 74 87-164 139-221 (553)
77 cd02940 DHPD_FMN Dihydropyrimi 68.1 55 0.0012 30.1 10.1 68 79-162 90-167 (299)
78 PRK08318 dihydropyrimidine deh 68.0 46 0.00099 32.3 9.9 66 81-162 92-167 (420)
79 PF02055 Glyco_hydro_30: O-Gly 67.3 33 0.00072 34.1 8.8 131 76-210 156-312 (496)
80 PF07364 DUF1485: Protein of u 67.1 89 0.0019 28.7 11.0 110 74-206 46-157 (292)
81 PRK03705 glycogen debranching 66.7 28 0.0006 36.0 8.4 66 73-140 242-338 (658)
82 cd04735 OYE_like_4_FMN Old yel 66.3 19 0.00041 34.0 6.7 132 69-210 74-258 (353)
83 PF02057 Glyco_hydro_59: Glyco 65.9 14 0.00031 37.6 6.0 83 77-167 116-202 (669)
84 KOG1552 Predicted alpha/beta h 65.4 9.3 0.0002 34.1 4.1 50 203-262 88-138 (258)
85 PRK02506 dihydroorotate dehydr 64.8 60 0.0013 30.1 9.6 74 72-162 76-156 (310)
86 TIGR02100 glgX_debranch glycog 64.3 35 0.00075 35.5 8.6 50 111-160 314-365 (688)
87 cd02929 TMADH_HD_FMN Trimethyl 64.1 34 0.00073 32.6 8.0 91 48-141 52-173 (370)
88 COG1908 FrhD Coenzyme F420-red 63.8 14 0.0003 28.8 4.2 74 88-167 53-126 (132)
89 PRK03995 hypothetical protein; 63.1 22 0.00047 32.2 6.1 69 87-158 179-260 (267)
90 PF02065 Melibiase: Melibiase; 63.0 50 0.0011 31.8 8.9 116 71-204 102-251 (394)
91 cd02801 DUS_like_FMN Dihydrour 61.8 37 0.00081 29.6 7.4 64 83-163 49-123 (231)
92 cd04738 DHOD_2_like Dihydrooro 60.2 1.3E+02 0.0029 28.0 11.1 75 78-163 117-197 (327)
93 PRK10605 N-ethylmaleimide redu 59.6 69 0.0015 30.4 9.2 46 48-95 49-99 (362)
94 COG1891 Uncharacterized protei 59.3 1.1E+02 0.0023 25.8 9.0 181 110-356 4-193 (235)
95 TIGR00742 yjbN tRNA dihydrouri 58.0 41 0.00089 31.3 7.2 60 86-162 52-122 (318)
96 KOG3035 Isoamyl acetate-hydrol 57.9 68 0.0015 28.0 7.8 67 71-140 98-173 (245)
97 PRK11815 tRNA-dihydrouridine s 56.7 37 0.00081 31.8 6.8 59 87-162 63-132 (333)
98 cd04741 DHOD_1A_like Dihydroor 56.0 1.1E+02 0.0023 28.1 9.6 59 87-162 90-156 (294)
99 PF04914 DltD_C: DltD C-termin 55.3 45 0.00097 26.6 6.0 62 71-137 34-95 (130)
100 PLN02411 12-oxophytodienoate r 54.5 38 0.00082 32.6 6.5 23 71-95 85-107 (391)
101 PF07745 Glyco_hydro_53: Glyco 54.2 84 0.0018 29.5 8.5 91 71-166 56-167 (332)
102 cd02933 OYE_like_FMN Old yello 53.3 31 0.00068 32.4 5.7 23 71-95 75-97 (338)
103 PRK05286 dihydroorotate dehydr 53.1 1.4E+02 0.003 28.1 10.0 76 78-164 127-207 (344)
104 PF08869 XisI: XisI protein; 53.0 7 0.00015 30.1 1.0 19 238-256 79-97 (111)
105 PF12138 Spherulin4: Spherulat 53.0 1.7E+02 0.0037 26.2 11.7 74 71-164 51-134 (253)
106 cd06589 GH31 The enzymes of gl 52.8 54 0.0012 29.5 7.0 54 72-143 65-118 (265)
107 cd06600 GH31_MGAM-like This fa 52.3 63 0.0014 30.0 7.5 34 110-143 129-162 (317)
108 PF12876 Cellulase-like: Sugar 52.1 25 0.00054 25.7 3.9 73 126-209 1-88 (88)
109 cd06599 GH31_glycosidase_Aec37 51.8 56 0.0012 30.3 7.1 32 111-142 138-169 (317)
110 cd06602 GH31_MGAM_SI_GAA This 51.0 99 0.0021 29.0 8.7 34 110-143 134-167 (339)
111 PRK01060 endonuclease IV; Prov 50.8 36 0.00077 30.8 5.6 47 120-166 14-60 (281)
112 PF04468 PSP1: PSP1 C-terminal 49.9 30 0.00066 25.4 4.0 56 109-164 17-81 (88)
113 PF07476 MAAL_C: Methylasparta 49.8 69 0.0015 28.1 6.6 102 112-247 87-190 (248)
114 PRK14866 hypothetical protein; 49.2 48 0.001 32.4 6.3 69 87-159 183-264 (451)
115 PF01120 Alpha_L_fucos: Alpha- 48.1 2.1E+02 0.0047 26.9 10.5 85 73-163 138-237 (346)
116 cd00019 AP2Ec AP endonuclease 47.8 45 0.00097 30.1 5.7 46 120-165 12-57 (279)
117 cd06598 GH31_transferase_CtsZ 47.1 66 0.0014 29.9 6.8 31 111-142 135-165 (317)
118 PRK08255 salicylyl-CoA 5-hydro 47.1 92 0.002 32.9 8.6 25 115-140 549-573 (765)
119 COG1902 NemA NADH:flavin oxido 46.9 63 0.0014 30.7 6.6 128 72-211 82-262 (363)
120 PRK09505 malS alpha-amylase; R 46.9 45 0.00097 34.6 6.0 29 111-139 434-462 (683)
121 cd04724 Tryptophan_synthase_al 46.7 2.1E+02 0.0045 25.4 10.0 66 122-209 95-161 (242)
122 PRK09936 hypothetical protein; 46.6 2.4E+02 0.0051 25.9 12.2 119 46-181 50-182 (296)
123 PF02684 LpxB: Lipid-A-disacch 45.9 1.3E+02 0.0027 28.8 8.5 112 75-207 14-140 (373)
124 cd06595 GH31_xylosidase_XylS-l 45.5 1.4E+02 0.0029 27.4 8.5 76 65-142 66-160 (292)
125 COG0296 GlgB 1,4-alpha-glucan 45.4 95 0.002 31.8 7.9 94 71-166 212-348 (628)
126 cd04739 DHOD_like Dihydroorota 45.3 1.8E+02 0.0039 27.1 9.4 58 88-162 99-162 (325)
127 TIGR03234 OH-pyruv-isom hydrox 43.9 53 0.0011 29.1 5.5 37 120-166 16-52 (254)
128 PRK13523 NADPH dehydrogenase N 43.8 1.1E+02 0.0023 28.8 7.7 91 47-140 50-164 (337)
129 smart00812 Alpha_L_fucos Alpha 43.0 1.5E+02 0.0033 28.4 8.6 83 72-160 127-221 (384)
130 COG2342 Predicted extracellula 42.3 1.1E+02 0.0024 27.8 6.9 50 118-167 126-185 (300)
131 PF01207 Dus: Dihydrouridine s 42.0 53 0.0011 30.4 5.3 65 82-163 47-122 (309)
132 cd01841 NnaC_like NnaC (CMP-Ne 41.2 1.8E+02 0.0039 23.7 8.0 64 71-138 73-137 (174)
133 PF00834 Ribul_P_3_epim: Ribul 40.7 1.2E+02 0.0025 26.2 6.8 77 105-210 61-137 (201)
134 PF05763 DUF835: Protein of un 40.0 66 0.0014 25.8 4.9 56 111-166 55-111 (136)
135 COG0763 LpxB Lipid A disacchar 39.9 1.2E+02 0.0026 28.9 7.1 111 76-207 18-143 (381)
136 TIGR01036 pyrD_sub2 dihydrooro 39.8 3E+02 0.0065 25.8 10.0 78 75-163 121-203 (335)
137 TIGR01037 pyrD_sub1_fam dihydr 39.8 2.7E+02 0.0057 25.5 9.6 58 88-162 90-156 (300)
138 TIGR00262 trpA tryptophan synt 39.5 2.8E+02 0.0061 24.8 10.3 65 123-209 107-172 (256)
139 PF07582 AP_endonuc_2_N: AP en 38.9 59 0.0013 21.6 3.6 42 121-163 3-45 (55)
140 PF05691 Raffinose_syn: Raffin 38.9 1.8E+02 0.0038 30.5 8.7 71 72-142 287-392 (747)
141 COG1453 Predicted oxidoreducta 38.7 2.4E+02 0.0052 26.8 8.8 28 117-144 33-60 (391)
142 CHL00200 trpA tryptophan synth 38.5 3E+02 0.0065 24.8 9.8 97 124-256 112-209 (263)
143 PF00150 Cellulase: Cellulase 38.5 2.4E+02 0.0051 25.0 9.0 88 73-167 62-164 (281)
144 TIGR00542 hxl6Piso_put hexulos 38.1 74 0.0016 28.7 5.6 48 120-167 18-66 (279)
145 COG5309 Exo-beta-1,3-glucanase 37.8 1.4E+02 0.003 27.0 6.8 58 79-137 221-279 (305)
146 cd06593 GH31_xylosidase_YicI Y 37.8 1.4E+02 0.003 27.5 7.3 32 110-142 129-160 (308)
147 cd01827 sialate_O-acetylestera 36.8 2E+02 0.0044 23.7 7.8 63 72-137 92-154 (188)
148 PRK14510 putative bifunctional 36.6 2.6E+02 0.0056 31.4 10.2 50 111-165 316-365 (1221)
149 cd06594 GH31_glucosidase_YihQ 36.5 1.5E+02 0.0032 27.5 7.4 67 73-141 71-166 (317)
150 PRK09441 cytoplasmic alpha-amy 36.5 66 0.0014 31.8 5.3 46 112-164 207-252 (479)
151 TIGR02631 xylA_Arthro xylose i 35.2 1.9E+02 0.004 27.8 7.9 64 97-167 17-82 (382)
152 PF06745 KaiC: KaiC; InterPro 34.2 1.5E+02 0.0033 25.6 6.8 91 113-213 97-189 (226)
153 PF08885 GSCFA: GSCFA family; 34.2 1.2E+02 0.0026 27.2 6.0 56 73-128 152-208 (251)
154 PF14307 Glyco_tran_WbsX: Glyc 34.1 55 0.0012 30.8 4.1 29 327-355 55-83 (345)
155 PF14606 Lipase_GDSL_3: GDSL-l 33.3 2.2E+02 0.0049 24.0 7.2 65 71-137 76-141 (178)
156 PF10566 Glyco_hydro_97: Glyco 33.3 3.4E+02 0.0074 24.7 8.8 78 72-165 72-149 (273)
157 PF00128 Alpha-amylase: Alpha 32.9 81 0.0018 28.4 5.1 48 111-166 142-189 (316)
158 COG3934 Endo-beta-mannanase [C 32.7 98 0.0021 30.5 5.4 119 82-209 74-208 (587)
159 PRK13210 putative L-xylulose 5 32.6 1.1E+02 0.0024 27.4 5.8 48 120-167 18-66 (284)
160 COG0429 Predicted hydrolase of 32.6 2.1E+02 0.0045 26.9 7.3 49 117-165 90-148 (345)
161 COG5185 HEC1 Protein involved 32.4 55 0.0012 31.8 3.7 57 107-165 97-153 (622)
162 cd06522 GH25_AtlA-like AtlA is 32.3 1.2E+02 0.0026 25.8 5.6 41 120-160 76-120 (192)
163 PRK13209 L-xylulose 5-phosphat 31.8 1.1E+02 0.0025 27.4 5.8 48 120-167 23-71 (283)
164 PRK12677 xylose isomerase; Pro 31.6 1.5E+02 0.0032 28.5 6.6 47 120-167 33-81 (384)
165 PF10354 DUF2431: Domain of un 31.5 2E+02 0.0043 23.9 6.6 102 78-213 45-155 (166)
166 smart00633 Glyco_10 Glycosyl h 31.2 3.8E+02 0.0082 23.8 9.5 73 76-159 106-179 (254)
167 COG1523 PulA Type II secretory 30.3 1.9E+02 0.0041 30.2 7.4 31 111-141 332-362 (697)
168 PRK13840 sucrose phosphorylase 29.5 2.4E+02 0.0052 28.1 7.8 56 110-166 166-227 (495)
169 PLN02711 Probable galactinol-- 29.4 1.6E+02 0.0035 30.7 6.7 69 73-141 305-408 (777)
170 PF04414 tRNA_deacylase: D-ami 29.2 1E+02 0.0023 26.8 4.7 66 90-158 131-207 (213)
171 PRK09989 hypothetical protein; 28.9 1.2E+02 0.0025 27.0 5.2 37 120-166 17-53 (258)
172 PF14488 DUF4434: Domain of un 28.5 3.4E+02 0.0075 22.5 12.3 108 47-165 33-151 (166)
173 TIGR03852 sucrose_gtfA sucrose 28.4 2.2E+02 0.0049 28.1 7.3 55 111-166 163-224 (470)
174 PF02896 PEP-utilizers_C: PEP- 28.1 1.2E+02 0.0025 28.0 5.0 89 116-212 119-209 (293)
175 TIGR01233 lacG 6-phospho-beta- 27.9 1.3E+02 0.0029 29.6 5.7 80 51-137 72-153 (467)
176 TIGR02456 treS_nterm trehalose 27.8 2E+02 0.0042 29.0 7.1 55 111-166 171-231 (539)
177 PF07745 Glyco_hydro_53: Glyco 27.7 5.2E+02 0.011 24.3 11.2 70 80-164 161-230 (332)
178 TIGR00736 nifR3_rel_arch TIM-b 27.6 3.9E+02 0.0084 23.6 8.0 54 88-159 67-131 (231)
179 PF03808 Glyco_tran_WecB: Glyc 27.6 3.6E+02 0.0077 22.4 9.6 80 63-165 49-128 (172)
180 TIGR01839 PHA_synth_II poly(R) 27.0 1.4E+02 0.003 30.2 5.6 45 121-165 237-281 (560)
181 PLN02982 galactinol-raffinose 26.9 2.3E+02 0.005 29.8 7.2 69 73-141 390-492 (865)
182 PRK10415 tRNA-dihydrouridine s 26.9 3.2E+02 0.0068 25.4 7.8 44 118-162 78-132 (321)
183 PF08194 DIM: DIM protein; In 26.4 81 0.0018 18.9 2.4 7 1-7 1-7 (36)
184 KOG3111 D-ribulose-5-phosphate 26.3 3E+02 0.0066 23.6 6.7 75 107-210 70-144 (224)
185 COG0162 TyrS Tyrosyl-tRNA synt 26.3 3E+02 0.0066 26.6 7.6 77 85-163 61-141 (401)
186 TIGR01093 aroD 3-dehydroquinat 26.2 4.4E+02 0.0095 23.0 13.4 62 87-165 56-117 (228)
187 cd07321 Extradiol_Dioxygenase_ 26.1 56 0.0012 23.3 2.1 30 105-134 8-37 (77)
188 PLN03231 putative alpha-galact 26.1 2.2E+02 0.0048 27.0 6.6 58 114-181 159-216 (357)
189 cd08578 GDPD_NUC-2_fungi Putat 25.8 2.7E+02 0.0059 25.7 7.0 31 111-141 222-252 (300)
190 PRK02412 aroD 3-dehydroquinate 25.5 4.8E+02 0.01 23.2 12.0 58 75-141 61-119 (253)
191 cd01838 Isoamyl_acetate_hydrol 25.2 2.6E+02 0.0057 23.0 6.6 64 72-137 91-162 (199)
192 cd02190 epsilon_tubulin The tu 24.9 4.2E+02 0.0092 25.3 8.4 88 113-210 79-173 (379)
193 PF07999 RHSP: Retrotransposon 24.7 5.3E+02 0.012 25.3 9.1 100 234-356 107-215 (439)
194 smart00518 AP2Ec AP endonuclea 24.6 1.8E+02 0.0038 26.0 5.6 45 122-166 14-58 (273)
195 PRK08005 epimerase; Validated 24.6 3E+02 0.0064 23.9 6.7 76 106-210 63-138 (210)
196 TIGR01769 GGGP geranylgeranylg 24.5 3.2E+02 0.0069 23.7 6.8 74 111-209 5-78 (205)
197 KOG1114 Tripeptidyl peptidase 24.3 2.8E+02 0.006 30.0 7.2 67 86-166 334-401 (1304)
198 PLN02219 probable galactinol-- 24.2 3.9E+02 0.0084 28.1 8.2 53 112-164 360-414 (775)
199 PRK14582 pgaB outer membrane N 24.1 8.1E+02 0.017 25.6 10.6 19 119-137 120-138 (671)
200 cd06059 Tubulin The tubulin su 24.1 4.3E+02 0.0092 25.2 8.3 87 113-210 69-164 (382)
201 PRK10426 alpha-glucosidase; Pr 23.9 2.3E+02 0.0051 29.2 6.8 66 73-140 269-362 (635)
202 smart00733 Mterf Mitochondrial 23.8 72 0.0016 17.1 1.9 21 323-344 10-30 (31)
203 cd01825 SGNH_hydrolase_peri1 S 23.6 2.3E+02 0.005 23.2 5.9 65 71-137 79-143 (189)
204 PRK10558 alpha-dehydro-beta-de 23.5 1.5E+02 0.0033 26.5 4.9 35 122-158 31-65 (256)
205 PRK10128 2-keto-3-deoxy-L-rham 23.4 1.6E+02 0.0035 26.6 5.0 35 123-159 31-65 (267)
206 PLN02899 alpha-galactosidase 23.1 2.3E+02 0.005 29.0 6.3 56 115-181 192-247 (633)
207 PF02662 FlpD: Methyl-viologen 23.1 1.4E+02 0.003 23.5 4.0 72 88-165 52-123 (124)
208 PF06342 DUF1057: Alpha/beta h 23.0 5.1E+02 0.011 23.8 7.9 66 71-143 47-113 (297)
209 PRK13575 3-dehydroquinate dehy 22.9 5.3E+02 0.012 22.8 12.4 61 73-141 47-107 (238)
210 PF05990 DUF900: Alpha/beta hy 22.2 5.4E+02 0.012 22.6 8.3 62 86-161 15-89 (233)
211 COG3226 Uncharacterized protei 21.8 77 0.0017 26.8 2.3 26 110-135 9-34 (204)
212 KOG0995 Centromere-associated 21.7 1.5E+02 0.0033 29.6 4.7 57 106-165 62-119 (581)
213 cd01828 sialate_O-acetylestera 21.4 4.4E+02 0.0094 21.2 8.0 61 71-137 70-130 (169)
214 TIGR03877 thermo_KaiC_1 KaiC d 21.4 4.7E+02 0.01 22.8 7.6 93 111-213 106-198 (237)
215 PLN02334 ribulose-phosphate 3- 21.0 4.1E+02 0.0089 23.1 7.1 68 123-210 80-149 (229)
216 PF06925 MGDG_synth: Monogalac 20.9 74 0.0016 26.3 2.2 23 235-257 145-168 (169)
217 PF03328 HpcH_HpaI: HpcH/HpaI 20.9 4.3E+02 0.0093 22.8 7.1 41 123-163 13-53 (221)
218 PF05984 Cytomega_UL20A: Cytom 20.9 1E+02 0.0022 22.3 2.5 7 1-7 1-7 (100)
219 cd06601 GH31_lyase_GLase GLase 20.8 6.6E+02 0.014 23.5 8.7 64 74-143 65-135 (332)
220 TIGR03239 GarL 2-dehydro-3-deo 20.7 2E+02 0.0043 25.7 5.0 34 123-158 25-58 (249)
221 PF04413 Glycos_transf_N: 3-De 20.4 5.3E+02 0.011 21.7 9.8 27 73-99 35-61 (186)
222 COG0036 Rpe Pentose-5-phosphat 20.1 4.8E+02 0.01 22.9 7.0 77 105-210 65-141 (220)
223 PRK05474 xylose isomerase; Pro 20.0 6.3E+02 0.014 24.6 8.3 105 74-189 116-237 (437)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=7.1e-70 Score=499.84 Aligned_cols=292 Identities=48% Similarity=0.904 Sum_probs=263.6
Q ss_pred CcEEEEEecCCC-CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCc
Q 035910 25 TLIRAGYWYSGN-GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNY 103 (364)
Q Consensus 25 ~~~~~gY~~~~~-~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~ 103 (364)
.-+++|||++|. .|.++++|.++||||+|+|+.++++++.+...+.+...+..+.+.+|+++|++|+++|||||.. ++
T Consensus 2 ~~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~-~s 80 (299)
T cd02879 2 TIVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGS-DS 80 (299)
T ss_pred CeEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CC
Confidence 347899999976 8999999999999999999999998777877766667778888889999999999999999986 56
Q ss_pred cccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeec
Q 035910 104 STYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAY 183 (364)
Q Consensus 104 ~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~ 183 (364)
..|+.++++++.|++|++++++++++|+|||||||||+|..++|+++|+.||++||++|++..+ ++++.+++||+++|+
T Consensus 81 ~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~-~~~~~~~~ls~av~~ 159 (299)
T cd02879 81 SAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEAR-SSGRPPLLLTAAVYF 159 (299)
T ss_pred chhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhh-ccCCCcEEEEeeccc
Confidence 7999999999999999999999999999999999999998878999999999999999987543 334445999999987
Q ss_pred Cccc----ccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEeeec
Q 035910 184 SPLS----TEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGLPFY 259 (364)
Q Consensus 184 ~~~~----~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGlp~y 259 (364)
.+.. ....|++++|.++||||+||+||+||+|....++|+|||+.+.+..+++.+|++|++.|+|++||+||||+|
T Consensus 160 ~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~Y 239 (299)
T cd02879 160 SPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLY 239 (299)
T ss_pred chhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEeccc
Confidence 7654 344689999999999999999999999977778999999987777899999999999999999999999999
Q ss_pred eeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEeCCEEEEECCHHHHHHHHHHH
Q 035910 260 GYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYA 339 (364)
Q Consensus 260 G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~ 339 (364)
||.|++ ||+.+.++|.+.+++||+|||++|++.|++|+
T Consensus 240 Gr~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a 277 (299)
T cd02879 240 GRAWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYA 277 (299)
T ss_pred cccccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHH
Confidence 999952 77778899999999999999999999999999
Q ss_pred HhCCCCeEEEEeccCCChhhh
Q 035910 340 KEKKLRGYYMWEVSYDHYWML 360 (364)
Q Consensus 340 ~~~glgGv~vW~l~~Dd~~~l 360 (364)
+++||||+|+|++++||...|
T Consensus 278 ~~~~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 278 KQKGLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred HhCCCCeEEEEEeecCCcccc
Confidence 999999999999999997765
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=5.1e-68 Score=502.86 Aligned_cols=318 Identities=34% Similarity=0.635 Sum_probs=278.3
Q ss_pred EEEEecCCC-------CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCc---chhHHHHHHHHHHhhCCCcEEEEEEcC
Q 035910 28 RAGYWYSGN-------GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPS---NEKQFSNFTDTVKIKNPAITTLLSIGG 97 (364)
Q Consensus 28 ~~gY~~~~~-------~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~k~~~~~~kvllsigg 97 (364)
++|||+.|. .|.++++|.++||||+|+|+.++++|........ ....+..+. .+|+++|++||++||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEcC
Confidence 589998843 5778999999999999999999998643333222 234455664 68999999999999999
Q ss_pred CCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC----CcchhhHHHHHHHHHHHHhHhhhcCCCCc
Q 035910 98 GNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT----SWDKYNIGILFKEWRATIDLEARNNSSQS 173 (364)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~----~~d~~~~~~~l~~lr~~l~~~~~~~~~~~ 173 (364)
|.. ++..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.||++||++|++.++
T Consensus 80 ~~~-~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~------ 152 (362)
T cd02872 80 WNF-GSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAP------ 152 (362)
T ss_pred CCC-CcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCc------
Confidence 986 4568999999999999999999999999999999999999974 47899999999999999998732
Q ss_pred eEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCC------CCCcHHHHHHHHHHcCC
Q 035910 174 QLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPN------SISNTEYRITQWIEDGL 247 (364)
Q Consensus 174 ~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~------~~~~~~~~v~~~~~~g~ 247 (364)
+++||+++|+.+......||+++|.++||+|+||+||+|++| +..++|+|||+... ...+++.+|++|++.|+
T Consensus 153 ~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gv 231 (362)
T cd02872 153 RLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGA 231 (362)
T ss_pred CeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC
Confidence 379999999876555556999999999999999999999997 46799999998532 24689999999999999
Q ss_pred CCCceEEEeeeceeeeeecCCCCCCCCCcccCCCC-----CCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEeCCE
Q 035910 248 SADKLVVGLPFYGYAWTLVKPEDNGIGAAATGPAL-----RDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSIGKI 322 (364)
Q Consensus 248 p~~KlvlGlp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~ 322 (364)
|++||+||||+||+.|++.++.++++|+|+.|++. ...|.++|.|||+.+ ..+ ++..||+.+++||++.+++
T Consensus 232 p~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~ 308 (362)
T cd02872 232 PPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQ 308 (362)
T ss_pred CHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCE
Confidence 99999999999999999998888889988876542 467899999999988 667 8999999999999999999
Q ss_pred EEEECCHHHHHHHHHHHHhCCCCeEEEEeccCCCh
Q 035910 323 WFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYDHY 357 (364)
Q Consensus 323 ~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~Dd~ 357 (364)
||+|||++|++.|++|++++||||+++|++++||+
T Consensus 309 ~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~ 343 (362)
T cd02872 309 WVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343 (362)
T ss_pred EEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 99999999999999999999999999999999993
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.5e-65 Score=489.72 Aligned_cols=321 Identities=27% Similarity=0.504 Sum_probs=261.7
Q ss_pred EEEEEecCCC-------CcCCCCCCCCC--CcEEEEEeEEeeCCCcEEecCCcc----hhHHHHHHHHHHhhCCCcEEEE
Q 035910 27 IRAGYWYSGN-------GFSVSDVNSAL--FTHLMCGFADVNSTSYELSLSPSN----EKQFSNFTDTVKIKNPAITTLL 93 (364)
Q Consensus 27 ~~~gY~~~~~-------~~~~~~~~~~~--~Thi~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~k~~~~~~kvll 93 (364)
+++|||..|. .|.+++||..+ ||||+|+|+.++++++.+...+.. ...+..+. .+|+++|++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 3689998832 56789999865 999999999999987776554432 24566665 6999999999999
Q ss_pred EEcCCCCCC----ccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-------------------------
Q 035910 94 SIGGGNNPN----YSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT------------------------- 144 (364)
Q Consensus 94 sigg~~~~~----~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~------------------------- 144 (364)
|||||...+ +..|+.++++++.|++||++++++|++|+|||||||||||..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999998511 357999999999999999999999999999999999999962
Q ss_pred -----CcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCC-C
Q 035910 145 -----SWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRT-N 218 (364)
Q Consensus 145 -----~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~-~ 218 (364)
++|+++|+.||++||++|++.+ ++|++++++.... ...||+++|+++|||||||+||+|++|.. .
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~~--------~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~ 230 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPDG--------LLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPE 230 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhcccC--------cEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCC
Confidence 3578999999999999998764 6888887643222 22489999999999999999999999764 3
Q ss_pred CCCcccccCCCC---CCCcHHHHHHHHHHcCCCCCceEEEeeeceeeeeecCCC-CCCCC--Cccc-----CCCCCCCCc
Q 035910 219 FTSAQAALYDPN---SISNTEYRITQWIEDGLSADKLVVGLPFYGYAWTLVKPE-DNGIG--AAAT-----GPALRDNGL 287 (364)
Q Consensus 219 ~~~~~apl~~~~---~~~~~~~~v~~~~~~g~p~~KlvlGlp~yG~~~~~~~~~-~~~~~--~~~~-----~~~~~~~g~ 287 (364)
.++++|||+... ...+++.+|++|++.|+|++||+||||||||.|++..+. ..+.+ ++.. |+....+|.
T Consensus 231 ~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~ 310 (413)
T cd02873 231 EADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGL 310 (413)
T ss_pred ccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCcc
Confidence 689999998543 246899999999999999999999999999999987653 22221 2333 333467789
Q ss_pred ccHHHHHHhhhhCC------CceEEEEeccce-eeEEEe-------CCEEEEECCHHHHHHHHHHHHhCCCCeEEEEecc
Q 035910 288 VTYKEIKNHIKNYG------PHVQLMYNSTYV-VNYCSI-------GKIWFGFDDVEAVRVKVSYAKEKKLRGYYMWEVS 353 (364)
Q Consensus 288 ~~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~ 353 (364)
++|.|||+.+...+ ..++..||++.+ .+|.|. .++||+|||++|++.|++|++++||||+|+|+++
T Consensus 311 l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~ 390 (413)
T cd02873 311 LSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLS 390 (413)
T ss_pred ccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeee
Confidence 99999999875421 015567888776 588882 2579999999999999999999999999999999
Q ss_pred CCCh
Q 035910 354 YDHY 357 (364)
Q Consensus 354 ~Dd~ 357 (364)
+||+
T Consensus 391 ~DD~ 394 (413)
T cd02873 391 LDDF 394 (413)
T ss_pred cCcC
Confidence 9994
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=7.7e-65 Score=476.53 Aligned_cols=316 Identities=33% Similarity=0.627 Sum_probs=274.3
Q ss_pred EEEEEecCCC----CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcch--hHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 035910 27 IRAGYWYSGN----GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNE--KQFSNFTDTVKIKNPAITTLLSIGGGNN 100 (364)
Q Consensus 27 ~~~gY~~~~~----~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~kvllsigg~~~ 100 (364)
+++|||++|. .|.+++++.++||||+|+|+.++++| .+.+.++.. ..+..+. .+|+++|++|+|++||||..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 3789999965 37899999999999999999999965 566554333 2455554 68888999999999999986
Q ss_pred CCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-cchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEE
Q 035910 101 PNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS-WDKYNIGILFKEWRATIDLEARNNSSQSQLILTA 179 (364)
Q Consensus 101 ~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~-~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~ 179 (364)
+..|+.+++|++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||++|++..+ . +.+++||+
T Consensus 79 --s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~--~-~~~~~lsi 153 (334)
T smart00636 79 --SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA--E-GKGYLLTI 153 (334)
T ss_pred --CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc--c-CCceEEEE
Confidence 7889999999999999999999999999999999999999753 6788999999999999987521 1 12489999
Q ss_pred EeecCcccccCCCC-hhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCC---CCcHHHHHHHHHHcCCCCCceEEE
Q 035910 180 MVAYSPLSTEAAYP-VDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNS---ISNTEYRITQWIEDGLSADKLVVG 255 (364)
Q Consensus 180 a~~~~~~~~~~~~~-~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~---~~~~~~~v~~~~~~g~p~~KlvlG 255 (364)
++|+.+......|+ +++|.+++|+|+||+||+|++|. ..+||+|||+.... ..+++.+|++|++.|+|++||+||
T Consensus 154 ~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlG 232 (334)
T smart00636 154 AVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLG 232 (334)
T ss_pred EecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEe
Confidence 99987665444578 59999999999999999999874 58999999985333 458999999999999999999999
Q ss_pred eeeceeeeeecCCCCCCCCCcccCCCC-----CCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEe-C-CEEEEECC
Q 035910 256 LPFYGYAWTLVKPEDNGIGAAATGPAL-----RDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSI-G-KIWFGFDD 328 (364)
Q Consensus 256 lp~yG~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~ydd 328 (364)
||+||+.|++.++.++++++|+.|++. ..+|.++|.|||+.+ + +...||+++++||.+. + ++||+|||
T Consensus 233 ip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd 307 (334)
T smart00636 233 IPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDD 307 (334)
T ss_pred eccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCC
Confidence 999999999999888889999877643 367889999999965 5 8999999999999995 4 59999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccCC
Q 035910 329 VEAVRVKVSYAKEKKLRGYYMWEVSYD 355 (364)
Q Consensus 329 ~~S~~~K~~~~~~~glgGv~vW~l~~D 355 (364)
++|++.|++|++++||||+++|+|++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999998
No 5
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-64 Score=481.60 Aligned_cols=333 Identities=27% Similarity=0.498 Sum_probs=285.7
Q ss_pred CCcEEEEEecCCC-CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCC
Q 035910 24 QTLIRAGYWYSGN-GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPN 102 (364)
Q Consensus 24 ~~~~~~gY~~~~~-~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~ 102 (364)
+....+||+..+. ...+.+++..+|||++|+|+.++.++..+...+.....+..+.+.+|.++|++|+|+|||||.+ +
T Consensus 56 c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~-n 134 (432)
T KOG2806|consen 56 CEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHG-N 134 (432)
T ss_pred ccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCC-C
Confidence 4466789998877 8899999999999999999999998876666665566778888899999999999999999942 4
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEe
Q 035910 103 YSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN-TSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMV 181 (364)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~-~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (364)
+..|+.+++|++.|+.||+++++++++|+|||||||||||. .+.|+.+|..|++|||++|.+..+ ...++...|+.++
T Consensus 135 s~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~-~~~~~~~~l~~~v 213 (432)
T KOG2806|consen 135 SGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETL-KSPDTAKVLEAVV 213 (432)
T ss_pred ccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhh-ccCCccceeeecc
Confidence 88999999999999999999999999999999999999995 458999999999999999999876 3344433555555
Q ss_pred ecCcc-cccCCCChhHHhcccceEeeeccccCCCCCCC-CCCcccccCCC----CCCCcHHHHHHHHHHcCCCCCceEEE
Q 035910 182 AYSPL-STEAAYPVDSIRQYLNWVRVMTAGYSKPMRTN-FTSAQAALYDP----NSISNTEYRITQWIEDGLSADKLVVG 255 (364)
Q Consensus 182 ~~~~~-~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~-~~~~~apl~~~----~~~~~~~~~v~~~~~~g~p~~KlvlG 255 (364)
..++. .....||+++|.+++||||||+|||+|+|..+ .+||+|||+.+ ...++++.++++|++.|.||+|++||
T Consensus 214 ~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~g 293 (432)
T KOG2806|consen 214 ADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLA 293 (432)
T ss_pred ccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEE
Confidence 54433 56668999999999999999999999999753 89999999964 33579999999999999999999999
Q ss_pred eeeceeeeeecCCCCCCCCCcccCCCC------CCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEe--CCEEEEEC
Q 035910 256 LPFYGYAWTLVKPEDNGIGAAATGPAL------RDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSI--GKIWFGFD 327 (364)
Q Consensus 256 lp~yG~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~yd 327 (364)
+|||||.|++++...+ ++.+..+++. ..+|.++|.|||+...+.+ ...||+.+++||++. +++||+||
T Consensus 294 ip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvtye 369 (432)
T KOG2806|consen 294 LPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVTYE 369 (432)
T ss_pred EecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEecC
Confidence 9999999999987655 4444433322 3678999999999655443 689999999999998 99999999
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEeccCCC-hhhhhh
Q 035910 328 DVEAVRVKVSYAKEKKLRGYYMWEVSYDH-YWMLSR 362 (364)
Q Consensus 328 d~~S~~~K~~~~~~~glgGv~vW~l~~Dd-~~~l~~ 362 (364)
|++|++.|++||+++||||+++|.+++|| .+++.+
T Consensus 370 n~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~ 405 (432)
T KOG2806|consen 370 NERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLN 405 (432)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcccc
Confidence 99999999999999999999999999999 445554
No 6
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.7e-64 Score=471.88 Aligned_cols=307 Identities=19% Similarity=0.335 Sum_probs=252.5
Q ss_pred EEEEEecCCC------CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCC
Q 035910 27 IRAGYWYSGN------GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNN 100 (364)
Q Consensus 27 ~~~gY~~~~~------~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~ 100 (364)
+++|||+.|. .+.+++||.++||||+|+|+.+++++ .+...+ ....+..+.+ +| ++|+++|||||..
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~~-~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFKK-LK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHHh-hc----CcEEEEEEeCCCC
Confidence 4689999963 57799999999999999999999875 565543 3444544432 32 3999999999986
Q ss_pred CCcc-----ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC----------CcchhhHHHHHHHHHHHHhHh
Q 035910 101 PNYS-----TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT----------SWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 101 ~~~~-----~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~----------~~d~~~~~~~l~~lr~~l~~~ 165 (364)
+.. .|+.++ ++++|++|++++++++++|+|||||||||+|.. ++|+++|+.||++||++|++
T Consensus 74 -s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~- 150 (345)
T cd02878 74 -STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS- 150 (345)
T ss_pred -CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc-
Confidence 221 488888 999999999999999999999999999999863 35899999999999999986
Q ss_pred hhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccC-------CCCCCCcHHHH
Q 035910 166 ARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALY-------DPNSISNTEYR 238 (364)
Q Consensus 166 ~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~-------~~~~~~~~~~~ 238 (364)
+ ++||+++|+.+... ..|+++++.++||||+||+||+||+|. ..+.+++|.. ......+++.+
T Consensus 151 ~--------~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~-~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 220 (345)
T cd02878 151 G--------KSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWD-YGNKWASPGCPAGNCLRSHVNKTETLDA 220 (345)
T ss_pred C--------cEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcC-ccCCcCCCCCCcccccccCCCchhHHHH
Confidence 2 68999988765543 359999999999999999999999985 3344444421 11112358899
Q ss_pred HHHHHHcCCCCCceEEEeeeceeeeeecCCCCCCCCCcccCCCC--------CCCCcccHHHHHHhh-hhCCCceEEEEe
Q 035910 239 ITQWIEDGLSADKLVVGLPFYGYAWTLVKPEDNGIGAAATGPAL--------RDNGLVTYKEIKNHI-KNYGPHVQLMYN 309 (364)
Q Consensus 239 v~~~~~~g~p~~KlvlGlp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~y~~i~~~~-~~~~~~~~~~~d 309 (364)
|++|++.|+|++||+||||+|||.|++.++.++++++|+.|++. ...+.+.|.++|..+ ...+ ++..||
T Consensus 221 v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d 298 (345)
T cd02878 221 LSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYD 298 (345)
T ss_pred HHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEe
Confidence 99999999999999999999999999999999999999988642 233445569999854 4456 899999
Q ss_pred ccceeeEE-EeCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccCC
Q 035910 310 STYVVNYC-SIGKIWFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYD 355 (364)
Q Consensus 310 ~~~~~~y~-~~~~~~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~D 355 (364)
+.+++||. +.+++||+|||++|++.|++|++++||||+|+|+|++|
T Consensus 299 ~~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 299 TDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred cCCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 99999987 56779999999999999999999999999999999987
No 7
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=8.3e-64 Score=465.57 Aligned_cols=283 Identities=28% Similarity=0.509 Sum_probs=246.4
Q ss_pred EEEEecCCCCcCC----C-CCCCCCCcEEEEEeEEeeCCCcEEecCC-------------------cchhHHHHHHHHHH
Q 035910 28 RAGYWYSGNGFSV----S-DVNSALFTHLMCGFADVNSTSYELSLSP-------------------SNEKQFSNFTDTVK 83 (364)
Q Consensus 28 ~~gY~~~~~~~~~----~-~~~~~~~Thi~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~k 83 (364)
|+|||++|..+.. . ++|.++||||+|+|+.+++++..+...+ .....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 5899999766543 3 5899999999999999999876554221 1234556665 689
Q ss_pred hhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC---------CcchhhHHHH
Q 035910 84 IKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT---------SWDKYNIGIL 154 (364)
Q Consensus 84 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~---------~~d~~~~~~~ 154 (364)
+++|++||++|||||.. +..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.|
T Consensus 80 ~~~p~lkvl~siGG~~~--s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~l 157 (322)
T cd06548 80 QKNPHLKILLSIGGWTW--SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLL 157 (322)
T ss_pred HhCCCCEEEEEEeCCCC--CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHH
Confidence 99999999999999997 789999999999999999999999999999999999999975 4789999999
Q ss_pred HHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCC----
Q 035910 155 FKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPN---- 230 (364)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~---- 230 (364)
|++||++|++.+. .+++ +++||+++|+.+.... .+++++|.++||+|+||+||+|++|. ..++|+|||+...
T Consensus 158 l~~Lr~~l~~~~~-~~~~-~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~~~ 233 (322)
T cd06548 158 LKELREALDALGA-ETGR-KYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPADPP 233 (322)
T ss_pred HHHHHHHHHHhhh-ccCC-ceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCCCC
Confidence 9999999998653 2233 3899999998766543 47899999999999999999999985 6899999998633
Q ss_pred CCCcHHHHHHHHHHcCCCCCceEEEeeeceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEec
Q 035910 231 SISNTEYRITQWIEDGLSADKLVVGLPFYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNS 310 (364)
Q Consensus 231 ~~~~~~~~v~~~~~~g~p~~KlvlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~ 310 (364)
...+++.+|++|++.|+|++||+||||+|||.|++ ++..||+
T Consensus 234 ~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~ 275 (322)
T cd06548 234 GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDE 275 (322)
T ss_pred CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcC
Confidence 36789999999999999999999999999999953 4679999
Q ss_pred cceeeEEEeC--CEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccCC
Q 035910 311 TYVVNYCSIG--KIWFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYD 355 (364)
Q Consensus 311 ~~~~~y~~~~--~~~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~D 355 (364)
.+++||++++ ++||+|||++|++.|++||+++||||+|+|++++|
T Consensus 276 ~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 276 VAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999999966 89999999999999999999999999999999998
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-64 Score=456.79 Aligned_cols=333 Identities=25% Similarity=0.401 Sum_probs=265.9
Q ss_pred CCCcEEEEEecCCC-----CcCCCCCCCCCCcEEEEEeEEeeCCCcEE----ec----------------CCcc-hhHHH
Q 035910 23 AQTLIRAGYWYSGN-----GFSVSDVNSALFTHLMCGFADVNSTSYEL----SL----------------SPSN-EKQFS 76 (364)
Q Consensus 23 ~~~~~~~gY~~~~~-----~~~~~~~~~~~~Thi~~~~~~~~~~~~~~----~~----------------~~~~-~~~~~ 76 (364)
..+.+++|||++|+ .|.+.+||++++|||+|+|+.|+.++... .. ++.. ....-
T Consensus 35 d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 45688999999954 56789999999999999999999987321 00 0001 12222
Q ss_pred HHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC---------Ccc
Q 035910 77 NFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT---------SWD 147 (364)
Q Consensus 77 ~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~---------~~d 147 (364)
..++.+|+++|++|+++|||||+. |..|+.++.++++|++|++++|+++++|+|||||||||||++ +++
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~--S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d 192 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSD--SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKD 192 (441)
T ss_pred HHHHHHhhhCCCceEEEeeccccc--CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCccc
Confidence 344579999999999999999997 999999999999999999999999999999999999999974 578
Q ss_pred hhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccC
Q 035910 148 KYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALY 227 (364)
Q Consensus 148 ~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~ 227 (364)
+++|+.||++||++|+..+. .+|+. |.||+|.|+.+...+ ..+..+++++|||||+|||||||.| ...+|||||||
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~-edgr~-Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~Ly 268 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGV-EDGRH-YQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAALY 268 (441)
T ss_pred HHHHHHHHHHHHHHHhhccc-ccCce-EEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-ccccccccccc
Confidence 99999999999999999876 66666 999999999988776 6789999999999999999999998 57899999999
Q ss_pred C------CCC-CCc------HHHHHHHHHHcCCCCCceEEEeeeceeeeeecCCCCCC----CCCccc--CCCC--CCCC
Q 035910 228 D------PNS-ISN------TEYRITQWIEDGLSADKLVVGLPFYGYAWTLVKPEDNG----IGAAAT--GPAL--RDNG 286 (364)
Q Consensus 228 ~------~~~-~~~------~~~~v~~~~~~g~p~~KlvlGlp~yG~~~~~~~~~~~~----~~~~~~--~~~~--~~~g 286 (364)
+ +.. .+. ...-++.....++||+||+||+|||||.|..++....+ ..+... |+.. ...+
T Consensus 269 ~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~ 348 (441)
T COG3325 269 GTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAG 348 (441)
T ss_pred cCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccccc
Confidence 4 111 122 22345566677899999999999999999988765432 222221 1111 1111
Q ss_pred --cccHH---HHH-HhhhhCCCceEEEEeccceeeEEE--eCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccCCChh
Q 035910 287 --LVTYK---EIK-NHIKNYGPHVQLMYNSTYVVNYCS--IGKIWFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYDHYW 358 (364)
Q Consensus 287 --~~~y~---~i~-~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~Dd~~ 358 (364)
...|. .+. +..+.++ ++..||+++++||+| ..+.+|+|||++|++.|.+||++++|||+|+|++++|-.+
T Consensus 349 n~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n~ 426 (441)
T COG3325 349 NGDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDENG 426 (441)
T ss_pred ccCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcch
Confidence 11221 222 2223345 999999999999999 5679999999999999999999999999999999999888
Q ss_pred hhhhc
Q 035910 359 MLSRA 363 (364)
Q Consensus 359 ~l~~a 363 (364)
+|++|
T Consensus 427 ~llna 431 (441)
T COG3325 427 VLLNA 431 (441)
T ss_pred hHHHH
Confidence 88775
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.3e-58 Score=436.28 Aligned_cols=320 Identities=30% Similarity=0.578 Sum_probs=270.6
Q ss_pred cEEEEEecCCCC-----cCCCCCCCCCCcEEEEEeEEeeCCCcEEe-----cC-CcchhHHHHHHHHHHhhCCCcEEEEE
Q 035910 26 LIRAGYWYSGNG-----FSVSDVNSALFTHLMCGFADVNSTSYELS-----LS-PSNEKQFSNFTDTVKIKNPAITTLLS 94 (364)
Q Consensus 26 ~~~~gY~~~~~~-----~~~~~~~~~~~Thi~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~k~~~~~~kvlls 94 (364)
++++|||+.|+. +.+++++.+.||||+|+|+.++.++.... .. ......+..+ ..+|+++|++||+++
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 478999999643 56889999999999999999999886532 22 2233444444 568888999999999
Q ss_pred EcCCCCCCcc-ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---cchhhHHHHHHHHHHHHhHhhhcCC
Q 035910 95 IGGGNNPNYS-TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS---WDKYNIGILFKEWRATIDLEARNNS 170 (364)
Q Consensus 95 igg~~~~~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~---~d~~~~~~~l~~lr~~l~~~~~~~~ 170 (364)
|||+.. +. .|..++++++.|++|+++|++++++|+|||||||||++... +++.+|..||++||++|++.++..
T Consensus 80 igg~~~--~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~- 156 (343)
T PF00704_consen 80 IGGWGM--SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG- 156 (343)
T ss_dssp EEETTS--SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred eccccc--cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc-
Confidence 999987 65 89999999999999999999999999999999999999762 599999999999999999963200
Q ss_pred CCceEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCC---CCCcHHHHHHHHHHcCC
Q 035910 171 SQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPN---SISNTEYRITQWIEDGL 247 (364)
Q Consensus 171 ~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~---~~~~~~~~v~~~~~~g~ 247 (364)
+ ++.||+++|+.+.... .++++++.++||||++|+||++++|.. .++|++|+++.. ...+++.++++|+..|+
T Consensus 157 -~-~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~ 232 (343)
T PF00704_consen 157 -K-GYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSD-VTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGV 232 (343)
T ss_dssp -S-TSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSS-BETTSSSSSHTTTSGTSSSHHHHHHHHHHTTS
T ss_pred -c-eeEEeecccccccccc-ccccccccccccccccccccCCCCccc-ccccccccccCCccCCCceeeeehhhhccccC
Confidence 1 2799999998766443 358999999999999999999998755 999999998654 36789999999999999
Q ss_pred CCCceEEEeeeceeeeeecCCCCCCCCCcc---cCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEeC--CE
Q 035910 248 SADKLVVGLPFYGYAWTLVKPEDNGIGAAA---TGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSIG--KI 322 (364)
Q Consensus 248 p~~KlvlGlp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~ 322 (364)
||+||+||+|+||+.|++.++......++. .+......+.++|.++|..+..++ +...||+.++++|.+.. ++
T Consensus 233 p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~ 310 (343)
T PF00704_consen 233 PPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKH 310 (343)
T ss_dssp TGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTE
T ss_pred ChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCe
Confidence 999999999999999999988777766554 344556788999999999998788 99999999999999966 79
Q ss_pred EEEECCHHHHHHHHHHHHhCCCCeEEEEeccCC
Q 035910 323 WFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYD 355 (364)
Q Consensus 323 ~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~D 355 (364)
||+|||++|++.|++|++++||||+++|+|++|
T Consensus 311 ~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 311 WISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=2.1e-58 Score=428.86 Aligned_cols=290 Identities=19% Similarity=0.271 Sum_probs=240.1
Q ss_pred EEEEEecCCC--CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEE--EEEcCCCCCC
Q 035910 27 IRAGYWYSGN--GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTL--LSIGGGNNPN 102 (364)
Q Consensus 27 ~~~gY~~~~~--~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvl--lsigg~~~~~ 102 (364)
.++|||++|. .+.+.+++.++||||+|+|+.++++++.+...+..... ..++..+|+++|++||+ +++|||..
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~-- 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSY-- 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCH--
Confidence 4789999965 56788899999999999999999887655443321111 22455789999999999 66799874
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEe-ccCCCC---CcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEE
Q 035910 103 YSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLS-WSWANT---SWDKYNIGILFKEWRATIDLEARNNSSQSQLILT 178 (364)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-we~~~~---~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls 178 (364)
+.|+.+++|++.|++|++++++++++|+||||||| ||+|.. ++++.+|+.||++||++|++.+ +.|+
T Consensus 81 -~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~--------~~l~ 151 (318)
T cd02876 81 -QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSAN--------LKLI 151 (318)
T ss_pred -HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcC--------CEEE
Confidence 46999999999999999999999999999999999 999965 3589999999999999999875 4677
Q ss_pred EEeecCccc-----ccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcC-CCCCce
Q 035910 179 AMVAYSPLS-----TEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDG-LSADKL 252 (364)
Q Consensus 179 ~a~~~~~~~-----~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g-~p~~Kl 252 (364)
+++|+.... ....||+++|+++||+|+||+||+|++ ..+||+||++ +++.+++++++.| +|++||
T Consensus 152 ~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~------~v~~~v~~~~~~~~vp~~Kl 222 (318)
T cd02876 152 LVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS------WVRSCLELLLPESGKKRAKI 222 (318)
T ss_pred EEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHe
Confidence 776653321 223589999999999999999999985 6899999998 8999999999987 999999
Q ss_pred EEEeeeceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceee-EEEeC---CEEEEECC
Q 035910 253 VVGLPFYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVN-YCSIG---KIWFGFDD 328 (364)
Q Consensus 253 vlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~~~---~~~i~ydd 328 (364)
+||||+|||.|++.+ .+ +.+++.+.+++++..+ ++..||+.+..+ |.|.+ ++||||||
T Consensus 223 vlGip~YG~~w~~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd 284 (318)
T cd02876 223 LLGLNFYGNDYTLPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPT 284 (318)
T ss_pred EEeccccccccccCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCC
Confidence 999999999997643 11 1233445555565666 789999996555 67743 79999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEeccCCC
Q 035910 329 VEAVRVKVSYAKEKKLRGYYMWEVSYDH 356 (364)
Q Consensus 329 ~~S~~~K~~~~~~~glgGv~vW~l~~Dd 356 (364)
++|++.|+++++++|| |+|+|+||+++
T Consensus 285 ~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 285 LKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 9999999999999999 99999999997
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.1e-55 Score=414.43 Aligned_cols=296 Identities=19% Similarity=0.248 Sum_probs=237.6
Q ss_pred CcEEEEEecCCCCcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCcc
Q 035910 25 TLIRAGYWYSGNGFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYS 104 (364)
Q Consensus 25 ~~~~~gY~~~~~~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~ 104 (364)
.+.|+||.... ..-...+++.+|||.+. + +.++ .++..+|+ +++||+++ ++..
T Consensus 35 ~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~~----~~~~~A~~--~~v~v~~~-~~~~----- 87 (358)
T cd02875 35 RFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DIDD----ELLCYAHS--KGVRLVLK-GDVP----- 87 (358)
T ss_pred ceEEEEEEeCC--CcCcccccccceEEEec-------C------CCCH----HHHHHHHH--cCCEEEEE-CccC-----
Confidence 46689998753 44467889999999976 1 1111 34444444 48999987 3222
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEee
Q 035910 105 TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT--SWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVA 182 (364)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~--~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (364)
...+.|++.|++|++++++++++|||||||||||+|.. +.++++|+.||++||++|++.++ .++||++++
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~------~~~Lsvav~ 159 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENP------GYQISFDVA 159 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCC------CcEEEEEEe
Confidence 13578999999999999999999999999999999974 47899999999999999998753 378999998
Q ss_pred cCcccccC-CCChhHHhcccceEeeeccccCCC-CC-CCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEeeec
Q 035910 183 YSPLSTEA-AYPVDSIRQYLNWVRVMTAGYSKP-MR-TNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGLPFY 259 (364)
Q Consensus 183 ~~~~~~~~-~~~~~~l~~~vD~v~vm~Yd~~~~-~~-~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGlp~y 259 (364)
+.+..... .||+++|+++||||+|||||+|+. |. ...++|+||+. +++.+|++|+..|+|++||+||+|+|
T Consensus 160 ~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip~Y 233 (358)
T cd02875 160 WSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLPWY 233 (358)
T ss_pred cCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeCCC
Confidence 77654433 399999999999999999999975 54 34689999987 89999999999999999999999999
Q ss_pred eeeeeecCCC-----CCCCCCcccCCCC--CCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEE-e---CC-EEEEEC
Q 035910 260 GYAWTLVKPE-----DNGIGAAATGPAL--RDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCS-I---GK-IWFGFD 327 (364)
Q Consensus 260 G~~~~~~~~~-----~~~~~~~~~~~~~--~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~~-~~i~yd 327 (364)
||+|++.++. +..++.|..|... ..++.++|.+||+.++..+ +...||+.+++||++ . +. +|||||
T Consensus 234 Gr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~yd 311 (358)
T cd02875 234 GYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWYD 311 (358)
T ss_pred CCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEeC
Confidence 9999976543 1223344444321 1235789999999887777 789999999999974 2 22 799999
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEeccCCChhhhhhc
Q 035910 328 DVEAVRVKVSYAKEKKLRGYYMWEVSYDHYWMLSRA 363 (364)
Q Consensus 328 d~~S~~~K~~~~~~~glgGv~vW~l~~Dd~~~l~~a 363 (364)
|++|++.|++|++++||||+|+|++|+||+...-+|
T Consensus 312 D~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~~ 347 (358)
T cd02875 312 NPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPIA 347 (358)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeccccccCCCchh
Confidence 999999999999999999999999999997655443
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=2.6e-54 Score=401.14 Aligned_cols=292 Identities=19% Similarity=0.316 Sum_probs=242.3
Q ss_pred EEEEEecCCCC--cCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCC--CC
Q 035910 27 IRAGYWYSGNG--FSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNN--PN 102 (364)
Q Consensus 27 ~~~gY~~~~~~--~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~--~~ 102 (364)
.++||+++++. +....-..+++|||++.++.+.++|. +.. ... ..+++.+|++ ++|++++|||+.. .+
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~--~~~---~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGT-LTG--LPD---ERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCC-CCC--CCC---HHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 47999998654 34555577899999999999998763 322 111 3466556665 7999999999862 13
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEee
Q 035910 103 YSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVA 182 (364)
Q Consensus 103 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (364)
+..|+.+++|++.|++|++++++++++|+|||||||||++.. +++.+|+.||++||++|++.+ +.|+++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~~--------~~lsv~~~ 145 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPAG--------YTLSTAVV 145 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhcC--------cEEEEEec
Confidence 667899999999999999999999999999999999999875 899999999999999999765 57887776
Q ss_pred cCccc-----ccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEee
Q 035910 183 YSPLS-----TEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGLP 257 (364)
Q Consensus 183 ~~~~~-----~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGlp 257 (364)
+.... ....|++++|++++|+|+||+||+|++| ..+||+||+. +++..++++. .|+|++||+||||
T Consensus 146 p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip 216 (313)
T cd02874 146 PKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG------WVERVLQYAV-TQIPREKILLGIP 216 (313)
T ss_pred CccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH------HHHHHHHHHH-hcCCHHHEEEeec
Confidence 54321 2245899999999999999999999985 5789999997 8888888776 7899999999999
Q ss_pred eceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEE--e---CCEEEEECCHHHH
Q 035910 258 FYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCS--I---GKIWFGFDDVEAV 332 (364)
Q Consensus 258 ~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~--~---~~~~i~ydd~~S~ 332 (364)
+||+.|++.++. ....+.++|.++|+++.+.+ +...||+.+++||.. + ..+||+|||++|+
T Consensus 217 ~YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si 282 (313)
T cd02874 217 LYGYDWTLPYKK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSL 282 (313)
T ss_pred ccccccccCCCC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHH
Confidence 999999865311 01235788999999998888 899999999999864 2 2589999999999
Q ss_pred HHHHHHHHhCCCCeEEEEeccCCChh
Q 035910 333 RVKVSYAKEKKLRGYYMWEVSYDHYW 358 (364)
Q Consensus 333 ~~K~~~~~~~glgGv~vW~l~~Dd~~ 358 (364)
+.|++|++++||||+++|+|++||..
T Consensus 283 ~~K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 283 QAKFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred HHHHHHHHHcCCCeEEEEECCCCCcc
Confidence 99999999999999999999999954
No 13
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=2.8e-50 Score=362.49 Aligned_cols=247 Identities=24% Similarity=0.447 Sum_probs=210.3
Q ss_pred EEEEecCCCCcC--CCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccc
Q 035910 28 RAGYWYSGNGFS--VSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYST 105 (364)
Q Consensus 28 ~~gY~~~~~~~~--~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~ 105 (364)
|+|||++|+.+. ++++|..+||||+++|+.++++| .+...+ ....+..+++.+|+ +++||+++|||+.. +.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~-~~~~~~~~~~~~~~--~~~kvl~sigg~~~---~~ 73 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANP-VRSELNSVVNAAHA--HNVKILISLAGGSP---PE 73 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecC-cHHHHHHHHHHHHh--CCCEEEEEEcCCCC---Cc
Confidence 589999987665 79999999999999999999986 555543 23345556555554 48999999999875 34
Q ss_pred cccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCc
Q 035910 106 YSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSP 185 (364)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (364)
|..++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||++|++.+ +.||+++++..
T Consensus 74 ~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~~--------~~lt~av~~~~ 143 (253)
T cd06545 74 FTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKEG--------KLLTAAVSSWN 143 (253)
T ss_pred chhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhcC--------cEEEEEccCcc
Confidence 6779999999999999999999999999999999999753 7899999999999998765 58899887543
Q ss_pred ccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCC-CCCceEEEeeeceeeee
Q 035910 186 LSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGL-SADKLVVGLPFYGYAWT 264 (364)
Q Consensus 186 ~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~-p~~KlvlGlp~yG~~~~ 264 (364)
.. .+ ..++.++||||+||+||++|+|....++|+||+. +++.++++|+..|+ |++||+||||+||+.|.
T Consensus 144 ~~---~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~ 213 (253)
T cd06545 144 GG---AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYGFY 213 (253)
T ss_pred cc---cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCcccccc
Confidence 21 13 3567899999999999999998767899999987 89999999999998 99999999999999882
Q ss_pred ecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEeCCEEEEECCHHHHHHHHHHHHhCCC
Q 035910 265 LVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSIGKIWFGFDDVEAVRVKVSYAKEKKL 344 (364)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~gl 344 (364)
|+++.+++.|+++++++ +
T Consensus 214 -------------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 231 (253)
T cd06545 214 -------------------------------------------------------------YNGIPTIRNKVAFAKQN-Y 231 (253)
T ss_pred -------------------------------------------------------------CCCHHHHHHHHHHHHHh-c
Confidence 67788999999999999 9
Q ss_pred CeEEEEeccCCC--hhhhhhc
Q 035910 345 RGYYMWEVSYDH--YWMLSRA 363 (364)
Q Consensus 345 gGv~vW~l~~Dd--~~~l~~a 363 (364)
||+|+|++++|. +.+|++|
T Consensus 232 gG~~~w~~~~d~~~~~~l~~~ 252 (253)
T cd06545 232 GGVMIWELSQDASGENSLLNA 252 (253)
T ss_pred CeEEEEeccCCCCCCcchhhc
Confidence 999999999997 5688876
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=3.7e-50 Score=369.31 Aligned_cols=289 Identities=14% Similarity=0.136 Sum_probs=230.3
Q ss_pred EEEEEecCCCCc--CCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCcc
Q 035910 27 IRAGYWYSGNGF--SVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYS 104 (364)
Q Consensus 27 ~~~gY~~~~~~~--~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~ 104 (364)
+++|||++|... .........+|||++.|+.+...++.+.... +. ....+++.+|.+.|.++++..++|+.. ++.
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~-d~-~~~~~~~~~k~~~~~l~~~~~~~~~~~-~~~ 77 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFV-DP-QGVAIIAAAKAHPKVLPLVQNISGGAW-DGK 77 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccC-Ch-HHHHHHHHHHcCCceeEEEEecCCCCC-CHH
Confidence 368999986543 3334455789999999999985444665432 22 223344567777788899999987665 456
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecC
Q 035910 105 TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYS 184 (364)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~ 184 (364)
.|+.+++|++.|++|++++++++++|+|||||||||++.. +++++|+.||++||++|++.+ +.|++++|+.
T Consensus 78 ~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~~--------~~lsv~v~~~ 148 (298)
T cd06549 78 NIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQG--------KQLTVTVPAD 148 (298)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhcC--------cEEEEEecCC
Confidence 7999999999999999999999999999999999999864 899999999999999999875 5888988865
Q ss_pred cccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEeeeceeeee
Q 035910 185 PLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGLPFYGYAWT 264 (364)
Q Consensus 185 ~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGlp~yG~~~~ 264 (364)
+ ..||+++|.+++|+|+||+||+|+++ ..++|.+|.. +++..+++.. .|+|++||+||||+|||+|+
T Consensus 149 ~----~~~d~~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~------~~~~~~~~~~-~~vp~~KlvlGip~YG~~w~ 215 (298)
T cd06549 149 E----ADWNLKALARNADKLILMAYDEHYQG--GAPGPIASQD------WFESNLAQAV-KKLPPEKLIVALGSYGYDWT 215 (298)
T ss_pred C----CCCCHHHHHHhCCEEEEEEeccCCCC--CCCCCCCChh------hHHHHHHHHH-hCCCHHHEEEEecccCcccc
Confidence 3 24899999999999999999999874 4677888775 7777887754 67999999999999999997
Q ss_pred ecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceee-EEE-e--C-CEEEEECCHHHHHHHHHHH
Q 035910 265 LVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVN-YCS-I--G-KIWFGFDDVEAVRVKVSYA 339 (364)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~-~--~-~~~i~ydd~~S~~~K~~~~ 339 (364)
+..+. ..++..+...++...+ ....||+....| |.+ + + .|+|||+|++|++.|++++
T Consensus 216 ~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a 277 (298)
T cd06549 216 KGGNT----------------KAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAV 277 (298)
T ss_pred CCCCC----------------cccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHH
Confidence 63210 1234455555555566 678898877666 455 2 2 4899999999999999999
Q ss_pred HhCCCCeEEEEeccCCChh
Q 035910 340 KEKKLRGYYMWEVSYDHYW 358 (364)
Q Consensus 340 ~~~glgGv~vW~l~~Dd~~ 358 (364)
+++||||+++|+||+||+.
T Consensus 278 ~~~~l~Gva~W~lg~ed~~ 296 (298)
T cd06549 278 QRLGPAGVALWRLGSEDPG 296 (298)
T ss_pred HHcCCCcEEEEeccCCCCC
Confidence 9999999999999999964
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=8.5e-39 Score=280.69 Aligned_cols=172 Identities=27% Similarity=0.462 Sum_probs=141.9
Q ss_pred EEEEecCCCCcC---CCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCcc
Q 035910 28 RAGYWYSGNGFS---VSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYS 104 (364)
Q Consensus 28 ~~gY~~~~~~~~---~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~ 104 (364)
++|||..|.... +..++.+.||||+++|+.+++++......+.........++.+++++|++||+++|||+.. ..
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~--~~ 78 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD--SS 78 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC--CC
Confidence 489999976554 4788999999999999999998754432222223333444568887799999999999886 44
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCc--chhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEee
Q 035910 105 TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSW--DKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVA 182 (364)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~--d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~ 182 (364)
.+ .++++++.|++|++++++++++|+|||||||||+|.... ++.+|+.||++||++|++.+ +.||+++|
T Consensus 79 ~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~--------~~ls~a~~ 149 (210)
T cd00598 79 PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAAN--------YLLTIAVP 149 (210)
T ss_pred Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccC--------cEEEEEec
Confidence 44 889999999999999999999999999999999998633 58999999999999998864 79999999
Q ss_pred cCcccccCCCChhHHhcccceEeeeccc
Q 035910 183 YSPLSTEAAYPVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 210 (364)
+.+......|++.++.+++|+|++|+||
T Consensus 150 ~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 150 ASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred CChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 8766544348999999999999999998
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=2e-37 Score=281.91 Aligned_cols=240 Identities=19% Similarity=0.284 Sum_probs=197.4
Q ss_pred CcEEEEEEcCCCC----CCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHh
Q 035910 88 AITTLLSIGGGNN----PNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATID 163 (364)
Q Consensus 88 ~~kvllsigg~~~----~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~ 163 (364)
+++.++.+...+. -+++..+.++.|+..++++++++++.++.+|+.|+.||+|.... .|++.|..|+|++|.+|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHhc
Confidence 5777776644331 02344689999999999999999999999999999999998875 999999999999999999
Q ss_pred HhhhcCCCCceEEEEEEeecCccc-----ccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHH
Q 035910 164 LEARNNSSQSQLILTAMVAYSPLS-----TEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYR 238 (364)
Q Consensus 164 ~~~~~~~~~~~~~ls~a~~~~~~~-----~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~ 238 (364)
+.+ +.+++|+++.... +...||+..+.+++|||.||+||.|..| +.+|+.||.. +++..
T Consensus 239 ~~G--------~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~------~vr~~ 302 (423)
T COG3858 239 SGG--------YTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG------WVRKV 302 (423)
T ss_pred cCC--------eEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch------hHhhh
Confidence 987 6999999875532 3344899999999999999999999875 7899999998 89999
Q ss_pred HHHHHHcCCCCCceEEEeeeceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEE
Q 035910 239 ITQWIEDGLSADKLVVGLPFYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCS 318 (364)
Q Consensus 239 v~~~~~~g~p~~KlvlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~ 318 (364)
+++.+.. +|++||+||+|+||++|.+..+.. |..+. . ++.++-..+.+..+ .++.||..++.||++
T Consensus 303 ieya~T~-iP~~Kv~mGip~YGYDW~~~y~~~---g~~~~-------a-~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~ 368 (423)
T COG3858 303 IEYALTV-IPAEKVMMGIPLYGYDWTLPYDPL---GYLAR-------A-ISPDEAIDIANRYN--ATIQYDATSQSPFFY 368 (423)
T ss_pred hhhhhee-cchHHeEEccccccccccCCCCCC---cceee-------e-cCcchhhhhhcccC--CccCcCccccCceEE
Confidence 9998886 999999999999999998654321 11111 1 33344333344455 889999999999987
Q ss_pred ----eC-CEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccCCChh
Q 035910 319 ----IG-KIWFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYDHYW 358 (364)
Q Consensus 319 ----~~-~~~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~Dd~~ 358 (364)
.+ +|++||||.+|+..|.+++|++||.||++|.|+++|..
T Consensus 369 y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 369 YVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred EEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcchh
Confidence 33 69999999999999999999999999999999999943
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=1.6e-34 Score=257.11 Aligned_cols=203 Identities=16% Similarity=0.145 Sum_probs=144.8
Q ss_pred CCcCCCCCCCCC--CcEEEEEeE-EeeCC----CcEEecCCcchh-HHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccc
Q 035910 36 NGFSVSDVNSAL--FTHLMCGFA-DVNST----SYELSLSPSNEK-QFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYS 107 (364)
Q Consensus 36 ~~~~~~~~~~~~--~Thi~~~~~-~~~~~----~~~~~~~~~~~~-~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~ 107 (364)
...+++++|.+. ||||+|+|+ ..+.. ++.....+.... .+..+ ..+|+++|++|||+|||||....+..+.
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAV-KSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHH-HHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 455789999988 999999999 33331 233333332222 33445 4799999999999999999972112233
Q ss_pred cccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCccc
Q 035910 108 SMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLS 187 (364)
Q Consensus 108 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~ 187 (364)
...+.+..|++|++++++++++|||||||||||+|. .++.+|+.|+++||++|++.+ +++.+++.+....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~--------~lt~a~vap~~~~ 159 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNG--------VIKVASIAPSEDA 159 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcC--------CeEEEEecCCccc
Confidence 333444556677999999999999999999999984 679999999999999998764 3333333333322
Q ss_pred ccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEeeeceeee
Q 035910 188 TEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGLPFYGYAW 263 (364)
Q Consensus 188 ~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGlp~yG~~~ 263 (364)
. ..+.+..+.+++|+|++|+||+++.+.+ ...+ .....++.|. .++|++||++|+|.+++.|
T Consensus 160 ~-~~~y~~~~~~~~d~id~~~~qfy~~~~~---~~~~---------~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 160 E-QSHYLALYNAYGDYIDYVNYQFYNYGVP---TTVA---------KYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred c-ccccHHHHHHhhCceeEEEhhhhCCCCC---CCHH---------HHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 1 2345788899999999999999986421 1111 2234555565 4599999999999999776
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=4.8e-33 Score=249.23 Aligned_cols=198 Identities=14% Similarity=0.246 Sum_probs=143.4
Q ss_pred EEEEEecCCCC--------cCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcc--hhHHHHHHHHHH-hhCCCcEEEEEE
Q 035910 27 IRAGYWYSGNG--------FSVSDVNSALFTHLMCGFADVNSTSYELSLSPSN--EKQFSNFTDTVK-IKNPAITTLLSI 95 (364)
Q Consensus 27 ~~~gY~~~~~~--------~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k-~~~~~~kvllsi 95 (364)
+++|||..++. +++..++..+||||+|+|+.++.+| .+.+.+.. ...+..+...++ .+++++|||+||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 47899988421 2233556789999999999999876 56554431 111122222121 245799999999
Q ss_pred cCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceE
Q 035910 96 GGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQL 175 (364)
Q Consensus 96 gg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~ 175 (364)
|||.. ..|+.++++++.|++|++++++++++|+|||||||||+|. +..+|..|+++||+++++. +
T Consensus 80 GG~~~---~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~~~---------~ 144 (256)
T cd06546 80 GGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFGPD---------F 144 (256)
T ss_pred CCCCC---CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhCCC---------c
Confidence 99984 3488888899999999999999999999999999999984 3569999999999998642 7
Q ss_pred EEEEEeecCcc----cccCCCChhHHh----cccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCC
Q 035910 176 ILTAMVAYSPL----STEAAYPVDSIR----QYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGL 247 (364)
Q Consensus 176 ~ls~a~~~~~~----~~~~~~~~~~l~----~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~ 247 (364)
.||+++.+..- .....+++.++. +++||+|+|.||.++.- . .. .....|...++
T Consensus 145 ~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~----~-------------~~-~~~~~~~~~~~ 206 (256)
T cd06546 145 IITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSM----S-------------SP-SDYDAIVAQGW 206 (256)
T ss_pred EEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCc----c-------------CH-HHHHHHHHcCC
Confidence 89988764311 111236776665 49999999999976531 0 01 12344556689
Q ss_pred CCCceEEEeee
Q 035910 248 SADKLVVGLPF 258 (364)
Q Consensus 248 p~~KlvlGlp~ 258 (364)
|++||++|+|.
T Consensus 207 ~~~Kv~iGlpa 217 (256)
T cd06546 207 DPERIVIGLLT 217 (256)
T ss_pred CcccEEEEEec
Confidence 99999999985
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=2e-31 Score=246.48 Aligned_cols=211 Identities=22% Similarity=0.312 Sum_probs=146.7
Q ss_pred cEEEEEecCCCCcC-----CCCCCCCCCcEEEEEeEEeeCCCc-EEe------cCCcchhHHHHHHHHHHhhCCCcEEEE
Q 035910 26 LIRAGYWYSGNGFS-----VSDVNSALFTHLMCGFADVNSTSY-ELS------LSPSNEKQFSNFTDTVKIKNPAITTLL 93 (364)
Q Consensus 26 ~~~~gY~~~~~~~~-----~~~~~~~~~Thi~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~k~~~~~~kvll 93 (364)
++++|||+.|.... +.+...+.||||+++|+.+.+++. .+. ........+.+.++.+|++ ++|||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEEE
Confidence 47899999865442 122344899999999999987642 222 1122334455555566664 799999
Q ss_pred EEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----cchhhHHHHHHHHHHHHhHhhhcC
Q 035910 94 SIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS----WDKYNIGILFKEWRATIDLEARNN 169 (364)
Q Consensus 94 sigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~----~d~~~~~~~l~~lr~~l~~~~~~~ 169 (364)
||||+.. + ..+.+++.|++|++++++++++|+|||||||||+|... +++.+|+.|||+||+++++
T Consensus 79 SiGG~~~--~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~----- 147 (312)
T cd02871 79 SIGGANG--H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP----- 147 (312)
T ss_pred EEeCCCC--c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 9999875 2 24778999999999999999999999999999998653 3779999999999999975
Q ss_pred CCCceEEEEEEeecCccc--------ccCCC--ChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHH
Q 035910 170 SSQSQLILTAMVAYSPLS--------TEAAY--PVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRI 239 (364)
Q Consensus 170 ~~~~~~~ls~a~~~~~~~--------~~~~~--~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v 239 (364)
+++||+++.+.... ....| .+.++.+++|+++||.||.++.+. +....+ .........++
T Consensus 148 ----~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~-----~~~~~~-~~~~~~~~~~~ 217 (312)
T cd02871 148 ----NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG-----CDGQSY-SQGTADFLVAL 217 (312)
T ss_pred ----CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc-----ccccCC-ccchhHHHHHH
Confidence 28999996543111 11124 367888899999999999876421 100001 01111233334
Q ss_pred HHHHHcC-----------CCCCceEEEeeec
Q 035910 240 TQWIEDG-----------LSADKLVVGLPFY 259 (364)
Q Consensus 240 ~~~~~~g-----------~p~~KlvlGlp~y 259 (364)
...+..| +|++||++|+|..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 218 ADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 4444455 8999999999974
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.98 E-value=2.4e-31 Score=231.52 Aligned_cols=292 Identities=14% Similarity=0.183 Sum_probs=228.4
Q ss_pred cEEEEEecCCC--CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCCC
Q 035910 26 LIRAGYWYSGN--GFSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSI--GGGNNP 101 (364)
Q Consensus 26 ~~~~gY~~~~~--~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsi--gg~~~~ 101 (364)
..+.||.++|+ +|+...+-.+++|||.+.|+.+...|..+.......-+ ..+++.+|++++++++++-+ ..|.
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid-~gwiralRk~~~~l~ivPR~~fd~~~-- 155 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDID-PGWIRALRKSGKDLHIVPRFYFDEFT-- 155 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccCC-hHHHHHHHHhCCCceeeceehhhhcc--
Confidence 45799999965 78999999999999999999998877555444332222 23567899999999988654 4444
Q ss_pred CccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEe-ccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEE
Q 035910 102 NYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLS-WSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAM 180 (364)
Q Consensus 102 ~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-we~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a 180 (364)
++.+..++.+++.|++..+.+++++++++|||+.|+ |....+--+......|++.|-+++++... ..+|++.
T Consensus 156 -~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq~l------~~iLvvP 228 (392)
T KOG2091|consen 156 -SADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQEL------QAILVVP 228 (392)
T ss_pred -chHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhe------EEEEEeC
Confidence 578889999999999999999999999999999997 54332211113345788888888887654 3445444
Q ss_pred eecCcccccCC----CChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEe
Q 035910 181 VAYSPLSTEAA----YPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGL 256 (364)
Q Consensus 181 ~~~~~~~~~~~----~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGl 256 (364)
++..+...+.. -+++.|...+|.+.+||||+.+. ..+|++||+. +++.+++...-...-+.||++||
T Consensus 229 p~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlGl 299 (392)
T KOG2091|consen 229 PVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLGL 299 (392)
T ss_pred CCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH------HHHHHHHHhCCccccccceeEee
Confidence 33333333222 16788999999999999999875 5799999999 99999998764445568999999
Q ss_pred eeceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEE-----eCCEEEEECCHHH
Q 035910 257 PFYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCS-----IGKIWFGFDDVEA 331 (364)
Q Consensus 257 p~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-----~~~~~i~ydd~~S 331 (364)
.|||.+|...+ ..+.++-+...++++... ....||+++...++- ++++.|.|++..|
T Consensus 300 NFYG~d~~~gd----------------g~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~S 361 (392)
T KOG2091|consen 300 NFYGNDFNLGD----------------GGEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTS 361 (392)
T ss_pred eccccccccCC----------------CCCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHh
Confidence 99999996421 135788888888888887 789999999888654 4589999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEeccCC
Q 035910 332 VRVKVSYAKEKKLRGYYMWEVSYD 355 (364)
Q Consensus 332 ~~~K~~~~~~~glgGv~vW~l~~D 355 (364)
+..++++|++.|. ||+||++||-
T Consensus 362 l~~Ri~lA~~~gv-gISIWe~GqG 384 (392)
T KOG2091|consen 362 LELRIELARELGV-GISIWEYGQG 384 (392)
T ss_pred HHHHHHHHHHhCC-ceEeeeccCc
Confidence 9999999999998 9999999985
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.94 E-value=5.8e-26 Score=204.99 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=140.5
Q ss_pred cEEEEEecCCCC------cCCCCCCCCCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCC
Q 035910 26 LIRAGYWYSGNG------FSVSDVNSALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGN 99 (364)
Q Consensus 26 ~~~~gY~~~~~~------~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~ 99 (364)
++.+|||..|.. ..+.++| +.+++|++....++.++... ...........++.+|++ |+||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 467899998764 4555666 56899988554444332100 011223334455555554 899999999988
Q ss_pred CCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC------CcchhhHHHHHHHHHHHHhHhhhcCCCCc
Q 035910 100 NPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT------SWDKYNIGILFKEWRATIDLEARNNSSQS 173 (364)
Q Consensus 100 ~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~------~~d~~~~~~~l~~lr~~l~~~~~~~~~~~ 173 (364)
. ...| ....+++.|++|++++++++++|||||||||||++.. +.+..+|..|+++||+.+++.+
T Consensus 76 ~--~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~------- 145 (255)
T cd06542 76 L--GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTD------- 145 (255)
T ss_pred C--CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCC-------
Confidence 6 4445 3466788999999999999999999999999999864 2478899999999999998643
Q ss_pred eEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceE
Q 035910 174 QLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLV 253 (364)
Q Consensus 174 ~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~Klv 253 (364)
++|++++++..... +.+++.+++||+++|+|+..+.- ... + ......|+|++|++
T Consensus 146 -kllt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~----~~~----~------------~~~~~~g~~~~k~i 200 (255)
T cd06542 146 -KLLTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSS----TQR----N------------WNTNSPKIPPEKMV 200 (255)
T ss_pred -cEEEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCcc----CCc----c------------cccccCCCCHHHce
Confidence 58888877543221 67899999999999999854431 100 0 01124689999999
Q ss_pred EEeeecee
Q 035910 254 VGLPFYGY 261 (364)
Q Consensus 254 lGlp~yG~ 261 (364)
+|+++++.
T Consensus 201 ~~~~~~~~ 208 (255)
T cd06542 201 YTESFEEE 208 (255)
T ss_pred eeeeeecc
Confidence 99998864
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.93 E-value=7e-24 Score=191.50 Aligned_cols=240 Identities=19% Similarity=0.206 Sum_probs=158.8
Q ss_pred EEEEEecCCCC--cCCCCCCCCCCcEEEEEeEEeeCCCcE--EecCCcch-------hHHHHHHHHHHhhCCCcEEEEEE
Q 035910 27 IRAGYWYSGNG--FSVSDVNSALFTHLMCGFADVNSTSYE--LSLSPSNE-------KQFSNFTDTVKIKNPAITTLLSI 95 (364)
Q Consensus 27 ~~~gY~~~~~~--~~~~~~~~~~~Thi~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~k~~~~~~kvllsi 95 (364)
.++.||.+... -..+.++...++-|+++|+..-++++. +.+...-. ..+...++.+++ +++||||||
T Consensus 2 ~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~--~G~KVlLSI 79 (280)
T cd02877 2 NIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQS--KGKKVLLSI 79 (280)
T ss_pred CeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHH--CCCEEEEEc
Confidence 36789977432 122333556799999999987765322 22222111 234444444444 589999999
Q ss_pred cCCCCCCccccccccCChhhHHHHHHHHHHHHH------------hCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHh
Q 035910 96 GGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIAR------------LCGFQGLDLSWSWANTSWDKYNIGILFKEWRATID 163 (364)
Q Consensus 96 gg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~------------~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~ 163 (364)
|||.. +..| .+++.|++|+++|.++.. +++|||||||||+|.. .+|..|+++||+.++
T Consensus 80 GG~~~--~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~ 149 (280)
T cd02877 80 GGAGG--SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFA 149 (280)
T ss_pred cCCCC--CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhh
Confidence 99986 4333 689999999999988762 5679999999999874 689999999999997
Q ss_pred HhhhcCCCCceEEEEEEeecCcccccCCCChhHHhc-ccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHH
Q 035910 164 LEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQ-YLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQW 242 (364)
Q Consensus 164 ~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~-~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~ 242 (364)
+.. ++ ++.||+++++... ..+....+.. ++|+++||.||..+- ....+..+ ......+.|
T Consensus 150 ~~~----~~-~~~LTaAPq~~~~---d~~~~~~i~~~~~D~i~vqfYn~~~c--~~~~~~~~---------~~~~~~~~w 210 (280)
T cd02877 150 SDP----SK-KYYLTAAPQCPYP---DASLGDAIATGLFDFIFVQFYNNPCC--SYASGNAS---------GFNFNWDTW 210 (280)
T ss_pred ccc----CC-ceEEEeccccCCc---chhHHHHHccCccCEEEEEEecCccc--cccccccc---------hhhhHHHHH
Confidence 641 11 4999999776321 1244455654 899999999995432 00011111 234456677
Q ss_pred HHcCCCC---CceEEEeeeceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEEe
Q 035910 243 IEDGLSA---DKLVVGLPFYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCSI 319 (364)
Q Consensus 243 ~~~g~p~---~KlvlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~ 319 (364)
... ++. +||+||||..-.. . ..|
T Consensus 211 ~~~-~~~~~~~kv~lGlpas~~a---------------a--------------------~~G------------------ 236 (280)
T cd02877 211 TSW-AKATSNAKVFLGLPASPEA---------------A--------------------GSG------------------ 236 (280)
T ss_pred HHh-cccCCCceEEEecccCCCC---------------C--------------------CCC------------------
Confidence 765 665 8999999865321 0 022
Q ss_pred CCEEEEECCHHHHHHHHHHHHh-C-CCCeEEEEeccCCCh
Q 035910 320 GKIWFGFDDVEAVRVKVSYAKE-K-KLRGYYMWEVSYDHY 357 (364)
Q Consensus 320 ~~~~i~ydd~~S~~~K~~~~~~-~-glgGv~vW~l~~Dd~ 357 (364)
|-++..+..-+..+++ . ++||||+|+..+|..
T Consensus 237 ------yv~p~~l~~~v~~~~~~~~~fGGvM~Wd~~~~~~ 270 (280)
T cd02877 237 ------YVDPSELASLVLPVKQKSPNFGGVMLWDASQDKQ 270 (280)
T ss_pred ------ccCHHHHHHHHHHHhhcCCCCcEEEEEhHhhccC
Confidence 5566666666654443 4 699999999999975
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.88 E-value=1.2e-21 Score=178.14 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=113.8
Q ss_pred CCCCcEEEEEeEEeeCCCcEEecCCc---c-hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHH
Q 035910 45 SALFTHLMCGFADVNSTSYELSLSPS---N-EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFI 120 (364)
Q Consensus 45 ~~~~Thi~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~ 120 (364)
-..|+||+++|+....++ ....... . ......-++.+|++ ++||++|+|||.. . . +..+...|++|+
T Consensus 23 ~~g~~~v~lAFi~~~~~~-~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g--~-~---~~~~~~~~~~~~ 93 (294)
T cd06543 23 ATGVKAFTLAFIVASGGC-KPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG--T-P---LATSCTSADQLA 93 (294)
T ss_pred HcCCCEEEEEEEEcCCCC-cccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC--C-c---cccCcccHHHHH
Confidence 358999999999887543 4433221 1 23334444567777 5899999999985 2 2 333788999999
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCcch---hhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCccccc-CCCChhH
Q 035910 121 DSSIKIARLCGFQGLDLSWSWANTSWDK---YNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTE-AAYPVDS 196 (364)
Q Consensus 121 ~~i~~~l~~~~~DGidiDwe~~~~~~d~---~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~-~~~~~~~ 196 (364)
+++.+++++|+|||||||||++.. .++ +++.++|++|+++++. +.|++++|..|.-.. .++++-+
T Consensus 94 ~a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p~----------l~vs~Tlp~~p~gl~~~g~~~l~ 162 (294)
T cd06543 94 AAYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYPD----------LKISFTLPVLPTGLTPDGLNVLE 162 (294)
T ss_pred HHHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCCC----------cEEEEecCCCCCCCChhHHHHHH
Confidence 999999999999999999999874 554 7888899999887742 678888887665332 3466777
Q ss_pred Hhc----ccceEeeeccccCCC
Q 035910 197 IRQ----YLNWVRVMTAGYSKP 214 (364)
Q Consensus 197 l~~----~vD~v~vm~Yd~~~~ 214 (364)
.+. .+|+||||+|||++.
T Consensus 163 ~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 163 AAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHcCCCcceeeeeeecCCCC
Confidence 777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=4.4e-17 Score=138.70 Aligned_cols=219 Identities=16% Similarity=0.284 Sum_probs=134.8
Q ss_pred CCCCcEEEEEecCCCC--------cCCCCCCC----CCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCc
Q 035910 22 RAQTLIRAGYWYSGNG--------FSVSDVNS----ALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAI 89 (364)
Q Consensus 22 ~~~~~~~~gY~~~~~~--------~~~~~~~~----~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 89 (364)
..++++.+|||++|.. -+..+|.+ ..++.+..+|..-..+=.....-...+..|+.-+..|.++ |.
T Consensus 22 ~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae--Gk 99 (332)
T COG3469 22 DISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE--GK 99 (332)
T ss_pred ccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--Cc
Confidence 3456688999998432 12222222 2344555555443331111111222345566655556555 78
Q ss_pred EEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CcchhhHHHHHHHHHHHHhHhhh
Q 035910 90 TTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT--SWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 90 kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~--~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
-|+||+||... .+--+....+.|+++|++++++|||||+|||.|.... .+........+|.+|+..+..++
T Consensus 100 avllsLGGAdg-------hIeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk 172 (332)
T COG3469 100 AVLLSLGGADG-------HIELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGK 172 (332)
T ss_pred EEEEEccCccc-------eEEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCC
Confidence 89999999654 1122334468999999999999999999999997542 24445688999999999998877
Q ss_pred cCCCCceEEEEEEeecCcccccCCC--ChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHH-
Q 035910 168 NNSSQSQLILTAMVAYSPLSTEAAY--PVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIE- 244 (364)
Q Consensus 168 ~~~~~~~~~ls~a~~~~~~~~~~~~--~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~- 244 (364)
++.||+++..+.-.....| -+.+|..+.|||+.+-|+-.|.. ...+..+++.-..+ ..+.+..-+++.
T Consensus 173 ------~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg-~w~~~~nawi~q~n--d~~kesfly~~~~ 243 (332)
T COG3469 173 ------NFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDG-NWVTESNAWIAQNN--DMVKESFLYYLTF 243 (332)
T ss_pred ------ceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCC-CCcCcccccccccc--HHHHHhHHHHhhh
Confidence 7999999765322222223 36789999999999999977651 11222233332110 012222222221
Q ss_pred ---------cCCCCCceEEEeee
Q 035910 245 ---------DGLSADKLVVGLPF 258 (364)
Q Consensus 245 ---------~g~p~~KlvlGlp~ 258 (364)
..+|.+|+++|||.
T Consensus 244 slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 244 SLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred hhhcCcccceecccceeEEecCC
Confidence 23789999999975
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.53 E-value=9.5e-13 Score=118.44 Aligned_cols=219 Identities=16% Similarity=0.141 Sum_probs=132.8
Q ss_pred HHHHHHHhhccccCCCCCcEEEEEecCC--C--CcCCCCCCCCCCcEEEEEeEEeeCCCcEEecC--Cc----c------
Q 035910 8 LVLHIFIFSESFPARAQTLIRAGYWYSG--N--GFSVSDVNSALFTHLMCGFADVNSTSYELSLS--PS----N------ 71 (364)
Q Consensus 8 ~~~~l~~~~~~~~~~~~~~~~~gY~~~~--~--~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~--~~----~------ 71 (364)
+|+.++.+.+.-...+.+..+++||.++ + .-....+....+..++++|+.--+.++...+. +. .
T Consensus 9 lF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~ 88 (568)
T KOG4701|consen 9 LFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKK 88 (568)
T ss_pred HHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccc
Confidence 4444444434344455666789999873 2 11223345567888999888544433333221 11 1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhC----------CCcEEEEeccC
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLC----------GFQGLDLSWSW 141 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~----------~~DGidiDwe~ 141 (364)
-.++..-++..+. .|+||||++||..+ ...+.+.+.-+.|++.+-+..-.- -+||+|+|.|.
T Consensus 89 CTqi~~di~~CQS--~GiKVlLSLGG~~G------nYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~ 160 (568)
T KOG4701|consen 89 CTQIETDIQVCQS--NGIKVLLSLGGYNG------NYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK 160 (568)
T ss_pred cchhhhHHHHHHh--cCeEEEEeccCccc------ceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec
Confidence 1122333344443 48999999999765 345677888889999998876542 28999999995
Q ss_pred CCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHH-hcccceEeeeccccCCCCCCCCC
Q 035910 142 ANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSI-RQYLNWVRVMTAGYSKPMRTNFT 220 (364)
Q Consensus 142 ~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l-~~~vD~v~vm~Yd~~~~~~~~~~ 220 (364)
. ....|..|.+.||+.|....+ ++.|+.++.++......+ ..| .+-.||+.|+-|+-.. ..
T Consensus 161 g----~~~~ysaLA~~L~~~Fa~~~r------~yYLsaAPQCP~PD~~~G---~aL~~~~fDf~~IQFYNN~~-----CS 222 (568)
T KOG4701|consen 161 G----TNTAYSALAKRLLEIFASDPR------RYYLSAAPQCPVPDHTLG---KALSENSFDFLSIQFYNNST-----CS 222 (568)
T ss_pred C----CcchHHHHHHHHHHHHccCCc------eEEeccCCCCCCCchhhh---hhhhccccceEEEEeecCCC-----cc
Confidence 3 336789999999999988766 699999877643222111 122 2457999999997321 00
Q ss_pred CcccccCCCCCCCcHHHHHHHHHHcCCCCCc---eEEEeeec
Q 035910 221 SAQAALYDPNSISNTEYRITQWIEDGLSADK---LVVGLPFY 259 (364)
Q Consensus 221 ~~~apl~~~~~~~~~~~~v~~~~~~g~p~~K---lvlGlp~y 259 (364)
+. .......+ .++..|... +.++| +.||||.-
T Consensus 223 ~S-----sG~~Q~~f-DsW~~ya~~-~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 223 GS-----SGSRQSTF-DAWVEYAED-SAYNKNTSLFLGLPGH 257 (568)
T ss_pred cc-----cCcccccH-HHHHHHHhh-hcccccceEEeeccCC
Confidence 00 01111122 233444444 66777 99999854
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.68 E-value=1.4e-07 Score=87.79 Aligned_cols=157 Identities=10% Similarity=0.033 Sum_probs=105.9
Q ss_pred HHHHHHhhCCCcEEEEEEcC-CCCCCccccccccCC-hhhHHHHHHHHHHHHHhCCCcEEEEeccCCC-CCcchhhHHHH
Q 035910 78 FTDTVKIKNPAITTLLSIGG-GNNPNYSTYSSMAGN-PSSRKYFIDSSIKIARLCGFQGLDLSWSWAN-TSWDKYNIGIL 154 (364)
Q Consensus 78 ~~~~~k~~~~~~kvllsigg-~~~~~~~~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~-~~~d~~~~~~~ 154 (364)
.+..+|++ |+||+-.|-- |.. ..+.+..++.+ ++.+..+++.|+++++.|||||+.||+|... .+++.+++..|
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F 127 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAF 127 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHH
Confidence 44556655 8999977741 221 24567788888 9999999999999999999999999999887 56889999999
Q ss_pred HHHHHHHHhHhhhcCCCCceEEEEEEeec---CcccccCC---CChhHHhcccceEeeeccccCCCCCCCCCCcccccCC
Q 035910 155 FKEWRATIDLEARNNSSQSQLILTAMVAY---SPLSTEAA---YPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYD 228 (364)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~---~~~~~~~~---~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~ 228 (364)
+++|++++++... ...|.--=.. +.-.++.. .+.+-+ +.+|-+.+ -|. |...
T Consensus 128 ~~~L~~~~~~~~~------~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl-NY~----W~~~---------- 185 (339)
T cd06547 128 LRYLKAKLHENVP------GSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL-NYW----WTEE---------- 185 (339)
T ss_pred HHHHHHHHhhcCC------CcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE-ecC----CCcc----------
Confidence 9999999998543 2333221110 00011111 122222 44554422 232 3211
Q ss_pred CCCCCcHHHHHHHHHHcCCCCCceEEEeeeceeeee
Q 035910 229 PNSISNTEYRITQWIEDGLSADKLVVGLPFYGYAWT 264 (364)
Q Consensus 229 ~~~~~~~~~~v~~~~~~g~p~~KlvlGlp~yG~~~~ 264 (364)
..+.+++.....|..+.+|.+||=..|+...
T Consensus 186 -----~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 -----SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred -----hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 4566667777888999999999999987754
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.24 E-value=1.4e-05 Score=74.03 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=89.2
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEe-ccCCC-----------------------CCcc-------hhhHHHHHHHHH
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLS-WSWAN-----------------------TSWD-------KYNIGILFKEWR 159 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiD-we~~~-----------------------~~~d-------~~~~~~~l~~lr 159 (364)
..|+-|+-.++-+.+++++|++|||.|| .-+|. .+.| +++...|+++++
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999 34432 1233 678889999999
Q ss_pred HHHhHhhhcCCCCceEEEEEEeecCccc--ccCCCChhHH--hcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcH
Q 035910 160 ATIDLEARNNSSQSQLILTAMVAYSPLS--TEAAYPVDSI--RQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNT 235 (364)
Q Consensus 160 ~~l~~~~~~~~~~~~~~ls~a~~~~~~~--~~~~~~~~~l--~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~ 235 (364)
+++++.++ .+.+++++.+.... ....-|.... ..++|++..|.|-.. .....+ .+
T Consensus 214 ~~ik~~kP------~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~---------~~ 272 (311)
T PF02638_consen 214 DAIKAIKP------WVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTA---------PY 272 (311)
T ss_pred HHHHHhCC------CCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhHH---------HH
Confidence 99999876 57788776533211 1101143333 368999999999421 111112 46
Q ss_pred HHHHHHHHHcCCCC-CceEEEeeecee
Q 035910 236 EYRITQWIEDGLSA-DKLVVGLPFYGY 261 (364)
Q Consensus 236 ~~~v~~~~~~g~p~-~KlvlGlp~yG~ 261 (364)
+..+..|.+.-.+. -+|.+|+.+|-.
T Consensus 273 ~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 273 EQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 77778887664443 489999988854
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.23 E-value=4.4e-06 Score=77.03 Aligned_cols=155 Identities=13% Similarity=0.092 Sum_probs=93.5
Q ss_pred HHHHHHhhCCCcEEEEEEc-CCCCCCccccccccC-ChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-cchhhHHHH
Q 035910 78 FTDTVKIKNPAITTLLSIG-GGNNPNYSTYSSMAG-NPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS-WDKYNIGIL 154 (364)
Q Consensus 78 ~~~~~k~~~~~~kvllsig-g~~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~-~d~~~~~~~ 154 (364)
.+..+|++ |+|||=.|- .|.. ....+..++. ++.....+++.|+++++.|||||.-|++|.+... .....+..|
T Consensus 47 widaAHrn--GV~vLGTiife~~~-~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 47 WIDAAHRN--GVKVLGTIIFEWGG-GAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHT--T--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hHHHHHhc--CceEEEEEEecCCc-hHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHH
Confidence 55566665 899985542 2222 2466778888 8889999999999999999999999999988764 688999999
Q ss_pred HHHHHHHHhHhhhcCCCCceEEEEEEeecCc---ccccCCCCh--hHHhcccceEeeeccccCCCCCCCCCCcccccCCC
Q 035910 155 FKEWRATIDLEARNNSSQSQLILTAMVAYSP---LSTEAAYPV--DSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDP 229 (364)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~---~~~~~~~~~--~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~ 229 (364)
+++|++++++ .. ...|.-.=.... -.++..++- ....+.+|-+.+ -| . |..
T Consensus 124 ~~~l~~~~~~-~~------~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY--~--W~~------------ 179 (311)
T PF03644_consen 124 LKYLRKEAHE-NP------GSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NY--N--WNP------------ 179 (311)
T ss_dssp HHHHHHHHHH-T-------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S------SH------------
T ss_pred HHHHHHHhhc-CC------CcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ec--C--CCc------------
Confidence 9999999998 43 233333221100 011111100 011234454433 12 1 321
Q ss_pred CCCCcHHHHHHHHHHcCCCCCceEEEeeeceee
Q 035910 230 NSISNTEYRITQWIEDGLSADKLVVGLPFYGYA 262 (364)
Q Consensus 230 ~~~~~~~~~v~~~~~~g~p~~KlvlGlp~yG~~ 262 (364)
..++.+++...+.+.+|.+|-+|+=..||.
T Consensus 180 ---~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 180 ---DSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ---HHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ---ccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 157788888899999999999999999987
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=98.09 E-value=0.0011 Score=60.99 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhCCCcEEEEec-cCCCC----------Cc----chhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeec
Q 035910 119 FIDSSIKIARLCGFQGLDLSW-SWANT----------SW----DKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAY 183 (364)
Q Consensus 119 f~~~i~~~l~~~~~DGidiDw-e~~~~----------~~----d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~ 183 (364)
..-.|.+-+.+.|||.|.+|. .+|.. .. -....+.||+..|+++++.+ ..||+.+..
T Consensus 125 Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--------v~vSaDVfG 196 (316)
T PF13200_consen 125 YNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYG--------VPVSADVFG 196 (316)
T ss_pred HHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcC--------CCEEEEecc
Confidence 444577777788999999996 57761 01 23668899999999999876 589998885
Q ss_pred Ccccc----cCCCChhHHhcccceEeeeccccCCCCCCCCCCccccc
Q 035910 184 SPLST----EAAYPVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAAL 226 (364)
Q Consensus 184 ~~~~~----~~~~~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl 226 (364)
..... ..+=++..|+++||+|.-|.|--| |..+..|...|-
T Consensus 197 ~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~ 241 (316)
T PF13200_consen 197 YVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPD 241 (316)
T ss_pred cccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCcc
Confidence 44332 222488999999999999999755 545555544443
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.84 E-value=0.00028 Score=58.79 Aligned_cols=85 Identities=5% Similarity=0.016 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccC
Q 035910 112 NPSSRKYFIDSSIKIARL-CGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEA 190 (364)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~-~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~ 190 (364)
+++..++..+.+.++-.. +...||.|||..+. .....|..|+++||..|... +.||++.=+. +....
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~~---------~~LSIT~L~d-W~~~~ 89 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPPD---------YRLSITALPD-WLSSP 89 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCCC---------ceEeeEEehh-hhcCc
Confidence 466666666666666644 36899999999764 67789999999999999985 4555553221 11111
Q ss_pred CCChhHHhcccceEeeecc
Q 035910 191 AYPVDSIRQYLNWVRVMTA 209 (364)
Q Consensus 191 ~~~~~~l~~~vD~v~vm~Y 209 (364)
. .+..|...||-+.+|+|
T Consensus 90 ~-~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 90 D-WLNALPGVVDELVLQVY 107 (181)
T ss_pred h-hhhhHhhcCCeeEEEee
Confidence 1 37788899999999999
No 31
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=96.02 E-value=0.45 Score=42.94 Aligned_cols=195 Identities=13% Similarity=0.147 Sum_probs=108.9
Q ss_pred CCcEEEE-EeEEeeCCCc--EEecCCcchhH----HHHHHHHHHhhCCCcEEEEEEc--CCCCCC-------------cc
Q 035910 47 LFTHLMC-GFADVNSTSY--ELSLSPSNEKQ----FSNFTDTVKIKNPAITTLLSIG--GGNNPN-------------YS 104 (364)
Q Consensus 47 ~~Thi~~-~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~k~~~~~~kvllsig--g~~~~~-------------~~ 104 (364)
..++|++ +|...+.+|. .+.+++..... +.++.-.++.+. ++||..-+. +|..+. ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4777776 6666666652 24455543332 333332344443 788874432 222211 11
Q ss_pred cccccc-CChhhHHHHHHHHHHHHHhC-CCcEEEEe-------ccCCCCC------cchhhHHHHHHHHHHHHhHhhhcC
Q 035910 105 TYSSMA-GNPSSRKYFIDSSIKIARLC-GFQGLDLS-------WSWANTS------WDKYNIGILFKEWRATIDLEARNN 169 (364)
Q Consensus 105 ~~~~~~-~~~~~r~~f~~~i~~~l~~~-~~DGidiD-------we~~~~~------~d~~~~~~~l~~lr~~l~~~~~~~ 169 (364)
...++- -+++.|+ .|.+|-+=|..| .||||-|. +|.+... .....+..|-.+|++..+....
T Consensus 109 ~y~RLSPf~p~~r~-~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp-- 185 (294)
T PF14883_consen 109 GYRRLSPFDPEARQ-IIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRP-- 185 (294)
T ss_pred CceecCCCCHHHHH-HHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCc--
Confidence 111111 1555554 488888888887 89999883 3322111 1224678999999999988653
Q ss_pred CCCceEEEEEEeecCcccc---cCCC--ChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHH
Q 035910 170 SSQSQLILTAMVAYSPLST---EAAY--PVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIE 244 (364)
Q Consensus 170 ~~~~~~~ls~a~~~~~~~~---~~~~--~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~ 244 (364)
++...--+.+.+-.. +.-| ++....+.-||..+|+.-+... ... |- .++...++....
T Consensus 186 ----~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~~---~~------~WL~~Lv~~v~~ 248 (294)
T PF14883_consen 186 ----DLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AED---PE------QWLAQLVDAVAA 248 (294)
T ss_pred ----cchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----ccC---HH------HHHHHHHHHHHh
Confidence 122111122211111 1112 5666677779999988765532 111 21 278888888888
Q ss_pred cCCCCCceEEEeeeceeeee
Q 035910 245 DGLSADKLVVGLPFYGYAWT 264 (364)
Q Consensus 245 ~g~p~~KlvlGlp~yG~~~~ 264 (364)
...+.+|+|+-|... +|+
T Consensus 249 ~p~~l~KtvFELQa~--dwr 266 (294)
T PF14883_consen 249 RPGGLDKTVFELQAV--DWR 266 (294)
T ss_pred cCCcccceEEEEecc--CCc
Confidence 877789999998654 454
No 32
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=94.91 E-value=0.088 Score=49.48 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=69.9
Q ss_pred HHHHhhCCCcEEEEE-EcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHH
Q 035910 80 DTVKIKNPAITTLLS-IGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEW 158 (364)
Q Consensus 80 ~~~k~~~~~~kvlls-igg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~l 158 (364)
+.++.+ |++|+=. |-.|.. ..+.-+.+++++++-+..++.++++.+-.||||=-|+.|.-.+...-.++..|++.|
T Consensus 118 n~AHrH--GV~vlGTFItEw~e-g~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~L 194 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDE-GKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHL 194 (526)
T ss_pred chhhhc--CceeeeeEEEEecc-chhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHH
Confidence 445555 8999855 456664 456778899999999999999999999999999999999776656778999999999
Q ss_pred HHHHhHhh
Q 035910 159 RATIDLEA 166 (364)
Q Consensus 159 r~~l~~~~ 166 (364)
.+.+++..
T Consensus 195 t~~~~~~~ 202 (526)
T KOG2331|consen 195 TKVLHSSV 202 (526)
T ss_pred HHHHhhcC
Confidence 99998864
No 33
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.78 E-value=0.64 Score=44.48 Aligned_cols=91 Identities=10% Similarity=0.102 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHHhCCCcEEEEec--cCCCC-------------------Cc--------chhhHHHHHHHHHHHHh
Q 035910 113 PSSRKYFIDSSIKIARLCGFQGLDLSW--SWANT-------------------SW--------DKYNIGILFKEWRATID 163 (364)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~~~DGidiDw--e~~~~-------------------~~--------d~~~~~~~l~~lr~~l~ 163 (364)
|+-|+-..+-+++.+++|..|||.+|- -+|.. +. -+++.++|++.+...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667777788889999999999999983 22221 01 24678899999999999
Q ss_pred HhhhcCCCCceEEEEEEe-ecCcccccCCCC-----hhHH--hcccceEeeeccc
Q 035910 164 LEARNNSSQSQLILTAMV-AYSPLSTEAAYP-----VDSI--RQYLNWVRVMTAG 210 (364)
Q Consensus 164 ~~~~~~~~~~~~~ls~a~-~~~~~~~~~~~~-----~~~l--~~~vD~v~vm~Yd 210 (364)
+..+ +..+++++ +.... ....|+ .... ..++|++..|.|=
T Consensus 261 avKp------~v~~svsp~n~~~~-~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 261 AVKP------NVKFSVSPFNPLGS-ATFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred hhCC------CeEEEEccCCCCCc-cceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 9876 57888876 31111 001232 1111 4579999999993
No 34
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=90.77 E-value=1.5 Score=35.09 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC-CCC------C-------C----------ccccccccCChhhHHHHHHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGG-GNN------P-------N----------YSTYSSMAGNPSSRKYFIDSSIKIAR 128 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg-~~~------~-------~----------~~~~~~~~~~~~~r~~f~~~i~~~l~ 128 (364)
..++.+++.+|++ |+||++-+.- +.. | + ...+...--|..-|+.++..+.++++
T Consensus 44 Dllge~v~a~h~~--Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 44 DLLGEQVEACHER--GIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILD 121 (132)
T ss_pred CHHHHHHHHHHHC--CCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHH
Confidence 4567788888877 7888844421 221 0 0 11255566677889989999999999
Q ss_pred hCCCcEEEEec
Q 035910 129 LCGFQGLDLSW 139 (364)
Q Consensus 129 ~~~~DGidiDw 139 (364)
+|++|||-+||
T Consensus 122 ~y~~DGiF~D~ 132 (132)
T PF14871_consen 122 RYDVDGIFFDI 132 (132)
T ss_pred cCCCCEEEecC
Confidence 99999999986
No 35
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=90.75 E-value=2.5 Score=44.86 Aligned_cols=86 Identities=14% Similarity=0.214 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEE-------cCCCCCC------ccccc----------------cccCChhhHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSI-------GGGNNPN------YSTYS----------------SMAGNPSSRKYFIDSS 123 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsi-------gg~~~~~------~~~~~----------------~~~~~~~~r~~f~~~i 123 (364)
..++.+++.++++ |++|++=+ +|....+ +..|. ....++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3577788888776 89999766 2211100 00010 1223577789999999
Q ss_pred HHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 124 IKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 124 ~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
.-|+++|++||+-||.-.-. + ..|+++++.++++.++
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~---~----~~f~~~~~~~l~~i~p 518 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHH---P----KAQMLAAREAIKALTP 518 (898)
T ss_pred HHHHHHcCCCEEEEechhhC---C----HHHHHHHHHHHHHhCC
Confidence 99999999999999975322 1 4678888888877654
No 36
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.28 E-value=3.4 Score=37.75 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC------c
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS------W 146 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~------~ 146 (364)
..+.+.+...+...++..++++|+|.. + +.++ .+++.+.++|+|+|+|++--|... .
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~-------------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~ 145 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS-------------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQ 145 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC-------------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCccccc
Confidence 334333333333225788999999832 2 2333 345566677999999999876532 1
Q ss_pred chhhHHHHHHHHHHHH
Q 035910 147 DKYNIGILFKEWRATI 162 (364)
Q Consensus 147 d~~~~~~~l~~lr~~l 162 (364)
+.+...++++++|+..
T Consensus 146 ~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 146 DPEAVANLLKAVKAAV 161 (289)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 3344556777777665
No 37
>PRK12313 glycogen branching enzyme; Provisional
Probab=89.70 E-value=3.9 Score=42.02 Aligned_cols=94 Identities=14% Similarity=0.196 Sum_probs=61.8
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------c-------------cccc---cccCChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPN---------Y-------------STYS---SMAGNPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~---------~-------------~~~~---~~~~~~~~r~~f~~~i~ 124 (364)
....++.+++.++++ |++|++=+-- ....+ + ..|. --..+++-|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 467788999888887 8999987521 11000 0 0010 11246889999999999
Q ss_pred HHHHhCCCcEEEEecc-------------CCC----CCcchhhHHHHHHHHHHHHhHhhh
Q 035910 125 KIARLCGFQGLDLSWS-------------WAN----TSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe-------------~~~----~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
-|+++|++||+-+|-- +.. ...+. .=..|++++++.+++..+
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~~p 354 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLEHP 354 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHHCC
Confidence 9999999999999921 000 00111 236899999999988754
No 38
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.54 E-value=4.6 Score=41.83 Aligned_cols=95 Identities=15% Similarity=0.281 Sum_probs=63.7
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------c-------------ccccc---ccCChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPN---------Y-------------STYSS---MAGNPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~---------~-------------~~~~~---~~~~~~~r~~f~~~i~ 124 (364)
....++.+++.++++ |++|++-+-- ....+ + ..|.. -..+++-|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 567788899888877 8999987621 00000 0 01111 2356788999999999
Q ss_pred HHHHhCCCcEEEEec--------------cCCC-CCcchhhH--HHHHHHHHHHHhHhhh
Q 035910 125 KIARLCGFQGLDLSW--------------SWAN-TSWDKYNI--GILFKEWRATIDLEAR 167 (364)
Q Consensus 125 ~~l~~~~~DGidiDw--------------e~~~-~~~d~~~~--~~~l~~lr~~l~~~~~ 167 (364)
-|++++++||+-+|= |+.. ....++|+ ..|+++|++.+++..+
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P 454 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFP 454 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 999999999999992 1111 11122333 5799999999998754
No 39
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=89.49 E-value=4.2 Score=41.52 Aligned_cols=86 Identities=13% Similarity=0.196 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC-CCC-----C----Cccccc-----------------cccCChhhHHHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGG-GNN-----P----NYSTYS-----------------SMAGNPSSRKYFIDSSIK 125 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg-~~~-----~----~~~~~~-----------------~~~~~~~~r~~f~~~i~~ 125 (364)
..++.+++.+|++ |++|++=+-- ... + .+..|. .-..++.-|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5688888888877 8999977521 100 0 000010 112367888999999999
Q ss_pred HHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 126 IARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 126 ~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
|++++++||+-+|--.. -+ ..|++++++++++..+
T Consensus 307 W~~e~~iDGfR~D~~~~---~~----~~~~~~~~~~~~~~~p 341 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGI---HD----IETMNEIRKALNKIDP 341 (605)
T ss_pred HHHHcCCCEEEEechhc---CC----HHHHHHHHHHHHhhCC
Confidence 99999999999995422 11 3478888888877643
No 40
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=89.48 E-value=3.7 Score=41.32 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCCcc-------ccc----------cccCCh---hhHHHHHHHHHHHHHh
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPNYS-------TYS----------SMAGNP---SSRKYFIDSSIKIARL 129 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~~~-------~~~----------~~~~~~---~~r~~f~~~i~~~l~~ 129 (364)
....++.+++.++++ |++|++=+-- ...++.. .|. --..++ .-|+.+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 456788888888877 8999987621 1110000 111 112345 8889999999999999
Q ss_pred CCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 130 CGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 130 ~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
|++||+-+|--...... .-..|++++++.+++..+
T Consensus 236 ~~iDGfR~D~~~~~~~~---~~~~~l~~~~~~~~~~~p 270 (542)
T TIGR02402 236 YHFDGLRLDAVHAIADT---SAKHILEELAREVHELAA 270 (542)
T ss_pred hCCcEEEEeCHHHhccc---cHHHHHHHHHHHHHHHCC
Confidence 99999999953211111 125799999999988754
No 41
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.08 E-value=3.2 Score=38.49 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcEEEEecc----CCCC-----CcchhhHHHHHHHHHHHHhHhhh
Q 035910 112 NPSSRKYFIDSSIKIARLCGFQGLDLSWS----WANT-----SWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiDwe----~~~~-----~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
+++-|+-+.+. ++.+.+.||||+.+|.- +-.. +...+....|+++|.+..++..+
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P 205 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNP 205 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCC
Confidence 55666666665 66777889999999952 1111 23346678899999888887765
No 42
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=87.77 E-value=8.9 Score=36.26 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCcc--------------ccccccCC---hhhHHHHHHHHHHHHHhCC
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSI--GGGNNPNYS--------------TYSSMAGN---PSSRKYFIDSSIKIARLCG 131 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi--gg~~~~~~~--------------~~~~~~~~---~~~r~~f~~~i~~~l~~~~ 131 (364)
..+.+++++..+|++ +.|+++-| +|... ... .....++. ++..+.|++.... +++-|
T Consensus 75 ~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~-~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~-a~~aG 150 (353)
T cd02930 75 QAAGHRLITDAVHAE--GGKIALQILHAGRYA-YHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAAL-AREAG 150 (353)
T ss_pred HHHHHHHHHHHHHHc--CCEEEeeccCCCCCC-CCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcC
Confidence 345567777777765 78888777 22211 000 00111211 2244556655544 45579
Q ss_pred CcEEEEec
Q 035910 132 FQGLDLSW 139 (364)
Q Consensus 132 ~DGidiDw 139 (364)
||||+|..
T Consensus 151 fDgVeih~ 158 (353)
T cd02930 151 YDGVEIMG 158 (353)
T ss_pred CCEEEEec
Confidence 99999976
No 43
>PLN02960 alpha-amylase
Probab=87.76 E-value=6.5 Score=41.38 Aligned_cols=94 Identities=9% Similarity=0.101 Sum_probs=62.4
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc-CCC-----------CCCc------------ccccc---ccCChhhHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIG-GGN-----------NPNY------------STYSS---MAGNPSSRKYFIDSS 123 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig-g~~-----------~~~~------------~~~~~---~~~~~~~r~~f~~~i 123 (364)
....++.++..++++ |++|++-+- +.. ++.. ..|.. -..+++-|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 456788898888876 899998861 000 0000 01111 235688999999999
Q ss_pred HHHHHhCCCcEEEEec-------------------cCCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 124 IKIARLCGFQGLDLSW-------------------SWANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 124 ~~~l~~~~~DGidiDw-------------------e~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
.-|+++|++||+-+|= +++.. .....-..||++|.+.++...+
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~~v~~~~P 603 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANEMLHQLHP 603 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHHHHHhhCC
Confidence 9999999999999971 11221 1223466899999999887554
No 44
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=87.39 E-value=8 Score=39.60 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=62.0
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------c-------------cccc---cccCChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPN---------Y-------------STYS---SMAGNPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~---------~-------------~~~~---~~~~~~~~r~~f~~~i~ 124 (364)
....++.+++.++++ |++|++=+-- ...++ . ..|. --..+++-|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 456788898888877 8999987521 11000 0 0011 01256889999999999
Q ss_pred HHHHhCCCcEEEEecc-CC-------------CCC-c--chhhHHHHHHHHHHHHhHhhh
Q 035910 125 KIARLCGFQGLDLSWS-WA-------------NTS-W--DKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe-~~-------------~~~-~--d~~~~~~~l~~lr~~l~~~~~ 167 (364)
-|+++|++||+-+|-- .. ... . ....=..|++++++.+++..+
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p 341 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFP 341 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999951 11 000 0 011225799999999987654
No 45
>PRK14706 glycogen branching enzyme; Provisional
Probab=87.31 E-value=8.1 Score=39.67 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCC--------C-cc-------------cccc---ccCChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNP--------N-YS-------------TYSS---MAGNPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~--------~-~~-------------~~~~---~~~~~~~r~~f~~~i~ 124 (364)
....++.+++.++++ |++|++-+-- ...+ + +. .|.. -..+++-|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456788888888877 8999987521 0000 0 00 1111 1347889999999999
Q ss_pred HHHHhCCCcEEEEec-cCC------------CCC--cchhhHHHHHHHHHHHHhHhhh
Q 035910 125 KIARLCGFQGLDLSW-SWA------------NTS--WDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 125 ~~l~~~~~DGidiDw-e~~------------~~~--~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
-|++++++||+-+|= ... ... .....=..||++|++.++...+
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p 350 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAP 350 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCC
Confidence 999999999999993 111 000 1112245799999999988654
No 46
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=86.82 E-value=25 Score=33.06 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=46.6
Q ss_pred CcEEEEEeEEeeCCCc----EEec-CCcchhHHHHHHHHHHhhCCCcEEEEEEc--CCCCCCcc--c-----cc------
Q 035910 48 FTHLMCGFADVNSTSY----ELSL-SPSNEKQFSNFTDTVKIKNPAITTLLSIG--GGNNPNYS--T-----YS------ 107 (364)
Q Consensus 48 ~Thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsig--g~~~~~~~--~-----~~------ 107 (364)
.--|+.....+++.+. .+.+ .+...+.++++++.+|++ +.|+++-|. |... ... . -+
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~-~~~~~~~~~~~ps~~~~~~ 123 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRG-DGDGSWLPPLAPSAVPEPR 123 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCc-CcccCCCcccCCCCCCCCC
Confidence 3345555555655431 1112 222345678888888876 678887763 3221 000 0 00
Q ss_pred -----cccCC---hhhHHHHHHHHHHHHHhCCCcEEEEec
Q 035910 108 -----SMAGN---PSSRKYFIDSSIKIARLCGFQGLDLSW 139 (364)
Q Consensus 108 -----~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiDw 139 (364)
+.++. .+..+.|++... .+++-|||||+|..
T Consensus 124 ~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~ 162 (343)
T cd04734 124 HRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQA 162 (343)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcc
Confidence 11111 234556666554 44567999999998
No 47
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=86.55 E-value=0.29 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=11.1
Q ss_pred CchhhHHHHHHHHHhhcc
Q 035910 1 MASKIIILVLHIFIFSES 18 (364)
Q Consensus 1 M~~~~~~~~~~l~~~~~~ 18 (364)
|+||++++|.++|.++++
T Consensus 1 MaSK~~llL~l~LA~lLl 18 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLL 18 (95)
T ss_pred CchhHHHHHHHHHHHHHH
Confidence 999987755554443333
No 48
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=86.35 E-value=2.4 Score=38.41 Aligned_cols=86 Identities=9% Similarity=0.091 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEec-cCCCCC---------------cchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEE
Q 035910 117 KYFIDSSIKIARLCGFQGLDLSW-SWANTS---------------WDKYNIGILFKEWRATIDLEARNNSSQSQLILTAM 180 (364)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiDw-e~~~~~---------------~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a 180 (364)
-++--+|.+-..+.|||-|.+|+ .+|.+. +..+.+..||.--|+++.. -||+.
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~v-----------pIS~D 263 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEV-----------PISAD 263 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhccc-----------ceEEE
Confidence 34456788888999999999997 466531 2235577777777777753 35665
Q ss_pred eecC----cccccCCCChhHHhcccceEeeeccccCC
Q 035910 181 VAYS----PLSTEAAYPVDSIRQYLNWVRVMTAGYSK 213 (364)
Q Consensus 181 ~~~~----~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~ 213 (364)
+-.. +.....+-+++.|+.|||.|.-|.|--|-
T Consensus 264 IYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 264 IYGQNGWSSTDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred eecccCccCCcchhhhhHHHHHhhhhhcccccccccc
Confidence 5432 11122234788999999999999997664
No 49
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.27 E-value=8.3 Score=40.32 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=63.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------c-------------cccc---cccCChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPN---------Y-------------STYS---SMAGNPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~---------~-------------~~~~---~~~~~~~~r~~f~~~i~ 124 (364)
....++.+++.++++ |++|+|=+-- ...++ + ..|. --..+++-|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 467788999888877 8999987521 11000 0 0011 13457889999999999
Q ss_pred HHHHhCCCcEEEEec-cC--------------CC--CCcchhhHHHHHHHHHHHHhHhhh
Q 035910 125 KIARLCGFQGLDLSW-SW--------------AN--TSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 125 ~~l~~~~~DGidiDw-e~--------------~~--~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
-|++++++||+-+|- .. |. ...+...-..|++++++.++...+
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p 450 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFP 450 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCC
Confidence 999999999999993 11 10 001112346899999999988654
No 50
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=83.13 E-value=2.5 Score=42.32 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=39.2
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEec-c-------CCCCC--cchhhHHHHHHHHHHHHhHh
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSW-S-------WANTS--WDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDw-e-------~~~~~--~d~~~~~~~l~~lr~~l~~~ 165 (364)
.|+.-|+-++++..+.++..||||+.||= - +.+.+ .=...|..||++++++++..
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k 302 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDK 302 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCC
Confidence 46778899999999999999999999982 1 11111 12567999999999999553
No 51
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=82.62 E-value=13 Score=40.55 Aligned_cols=85 Identities=12% Similarity=0.114 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC-CCCC-------Cccccc----------------cccCChhhHHHHHHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGG-GNNP-------NYSTYS----------------SMAGNPSSRKYFIDSSIKIAR 128 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg-~~~~-------~~~~~~----------------~~~~~~~~r~~f~~~i~~~l~ 128 (364)
..++.+++.+|++ |++|+|=+-= .... ....|. .-..++.-|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 4688888888777 8999987521 1100 000000 112356778999999999999
Q ss_pred hCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 129 LCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 129 ~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
+|++||+-||.-.. -+. .+++.++.++++..
T Consensus 633 ey~VDGFRfDl~g~---~d~----~~~~~~~~~l~~~d 663 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HDA----ASIEIAYKEAKAIN 663 (1111)
T ss_pred hcCCcEEEEecccc---CCH----HHHHHHHHHHHHhC
Confidence 99999999996421 232 35566666665543
No 52
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=82.37 E-value=47 Score=34.33 Aligned_cols=196 Identities=13% Similarity=0.054 Sum_probs=104.8
Q ss_pred CCCcEEEE-EeEEeeCCCc--EEecCCcchh----HHHHHHHHHHhhCCCcEEEEEE--cCCCCCCcc------------
Q 035910 46 ALFTHLMC-GFADVNSTSY--ELSLSPSNEK----QFSNFTDTVKIKNPAITTLLSI--GGGNNPNYS------------ 104 (364)
Q Consensus 46 ~~~Thi~~-~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~k~~~~~~kvllsi--gg~~~~~~~------------ 104 (364)
-..+||.+ +|...+.+|. .+.+++.... .+.++.=.++.+. ++||..-+ -+|..+.+.
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 45889888 7777777763 2555555433 2333322355554 68887333 333220000
Q ss_pred ------cccccc-CChhhHHHHHHHHHHHHHhC-CCcEEEEecc-------CCC--------------C----Cc-----
Q 035910 105 ------TYSSMA-GNPSSRKYFIDSSIKIARLC-GFQGLDLSWS-------WAN--------------T----SW----- 146 (364)
Q Consensus 105 ------~~~~~~-~~~~~r~~f~~~i~~~l~~~-~~DGidiDwe-------~~~--------------~----~~----- 146 (364)
.+.++- -+++.| +.|.+|-+=|..| .||||=+.=+ -.. + ..
T Consensus 425 ~~~~~~~y~rlspf~~~~~-~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEVR-QRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHHH-HHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 111111 144444 4588888888887 7999988433 111 0 00
Q ss_pred ------chhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccc---cCCC--ChhHHhcccceEeeeccccCCCC
Q 035910 147 ------DKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLST---EAAY--PVDSIRQYLNWVRVMTAGYSKPM 215 (364)
Q Consensus 147 ------d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~---~~~~--~~~~l~~~vD~v~vm~Yd~~~~~ 215 (364)
....+..|-.+|.+..+.... +++...--+.+.+-.. +..| ++....+..||+-+|+|-+...
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~-----p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~- 577 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRG-----PQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEK- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC-----ccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhc-
Confidence 123466888999999987531 0011111122211111 1112 5667777889999999874422
Q ss_pred CCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEeeec
Q 035910 216 RTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGLPFY 259 (364)
Q Consensus 216 ~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGlp~y 259 (364)
...+. ...+....++...+.-...+|+|+-|..-
T Consensus 578 ---~~~~~-------~~~w~~~l~~~v~~~~~~~~k~vfelQ~~ 611 (672)
T PRK14581 578 ---VPLSE-------SNEWLAELVNKVAQRPGALEKTVFELQSK 611 (672)
T ss_pred ---ccccc-------HHHHHHHHHHHHHhcCCcccceEEEeecc
Confidence 11111 11256666666665545679999988653
No 53
>PRK14705 glycogen branching enzyme; Provisional
Probab=81.96 E-value=16 Score=40.33 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC---------c-------------ccccc---ccCChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPN---------Y-------------STYSS---MAGNPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~---------~-------------~~~~~---~~~~~~~r~~f~~~i~ 124 (364)
....++.+++.++++ |++|++=+-- ....+ . ..|.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 567788999888877 8999977511 00000 0 01111 1356788999999999
Q ss_pred HHHHhCCCcEEEEecc-C--------------CCCCcchhh--HHHHHHHHHHHHhHhhh
Q 035910 125 KIARLCGFQGLDLSWS-W--------------ANTSWDKYN--IGILFKEWRATIDLEAR 167 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe-~--------------~~~~~d~~~--~~~~l~~lr~~l~~~~~ 167 (364)
-|+++|++||+-+|-- . |.....++| =..|++++.+.++...+
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p 950 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHP 950 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999852 1 000011122 36899999999987654
No 54
>PLN03244 alpha-amylase; Provisional
Probab=80.11 E-value=24 Score=36.95 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcC-CCCCC-----------c-cccc--------------cccCChhhHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGG-GNNPN-----------Y-STYS--------------SMAGNPSSRKYFIDSS 123 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg-~~~~~-----------~-~~~~--------------~~~~~~~~r~~f~~~i 123 (364)
....++.++..++++ |++|+|=+-- ...++ . ..|. --..+++-|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 467788899888876 8999987621 00000 0 0111 1223577889999999
Q ss_pred HHHHHhCCCcEEEEec-------------------cCCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 124 IKIARLCGFQGLDLSW-------------------SWANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 124 ~~~l~~~~~DGidiDw-------------------e~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
.-|+++|++||+-+|= +++....+ ..=+.||+.+.+.++...+
T Consensus 517 ~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d-~dAv~fL~laN~~ih~~~P 578 (872)
T PLN03244 517 NWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVD-KDALMYLILANEILHALHP 578 (872)
T ss_pred HHHHHHhCcCcceeecchhheeeccccccccCCccccccccCC-chHHHHHHHHHHHHHHhCC
Confidence 9999999999999981 11111111 2235677777777777654
No 55
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=79.41 E-value=21 Score=37.25 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCC-C------------CCCccc-----------cc---cccCChhhHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGG-N------------NPNYST-----------YS---SMAGNPSSRKYFIDSS 123 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~-~------------~~~~~~-----------~~---~~~~~~~~r~~f~~~i 123 (364)
....++.+++.++++ |++|++=+--. . ...... +. --..+++-|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 456788899888876 89999875210 0 000000 10 0123567888999999
Q ss_pred HHHHHhCCCcEEEEecc-------------CC-------CCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 124 IKIARLCGFQGLDLSWS-------------WA-------NTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 124 ~~~l~~~~~DGidiDwe-------------~~-------~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
.-|+++|++||+-+|=- +. +...| ..=..||+++.+.++...+
T Consensus 376 ~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d-~~a~~fL~~~N~~i~~~~p 438 (758)
T PLN02447 376 RWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATD-VDAVVYLMLANDLLHGLYP 438 (758)
T ss_pred HHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccC-hHHHHHHHHHHHHHHHhCC
Confidence 99999999999998821 11 11112 2235688888888887654
No 56
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=79.19 E-value=12 Score=38.51 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=75.3
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-------------------------c-----------chhhHHHHH
Q 035910 112 NPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS-------------------------W-----------DKYNIGILF 155 (364)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~-------------------------~-----------d~~~~~~~l 155 (364)
+|+.|+...+-..++.+.+.+|||-+|=+-..++ . ....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 5666666555555666667999999975532210 0 113456888
Q ss_pred HHHHHHHhHhhhcCCCCceEEEEEEeecCcccc---cCCC--ChhHHhcccceEeeeccccCCCCCCCCCCcccccCCCC
Q 035910 156 KEWRATIDLEARNNSSQSQLILTAMVAYSPLST---EAAY--PVDSIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPN 230 (364)
Q Consensus 156 ~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~---~~~~--~~~~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~ 230 (364)
.+|.+..+.... +++...--+.+.+-.. +..| ++....+..||+-+|+.-+... .+.+.+
T Consensus 519 ~~l~~~v~~~~~-----~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~~~------ 583 (671)
T PRK14582 519 LELSARVKAIRG-----PQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEKSS------ 583 (671)
T ss_pred HHHHHHHHhhcC-----ccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcccH------
Confidence 899999887531 0011111122211111 1112 5667777789999999554422 111111
Q ss_pred CCCcHHHHHHHHHHcCCCCCceEEEeeec
Q 035910 231 SISNTEYRITQWIEDGLSADKLVVGLPFY 259 (364)
Q Consensus 231 ~~~~~~~~v~~~~~~g~p~~KlvlGlp~y 259 (364)
..++...|+...+.-...+|+|+-|...
T Consensus 584 -~~wl~~l~~~v~~~~~~~~k~vfelq~~ 611 (671)
T PRK14582 584 -DAWLIQLVNQVKNIPGALDKTIFELQAR 611 (671)
T ss_pred -HHHHHHHHHHHHhcCCcccceEEEeecc
Confidence 1267777777776656779999988653
No 57
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=78.26 E-value=4.7 Score=29.08 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=32.4
Q ss_pred cCCCCCCccccccccCC-hhhHHHHHHHHHHHHHhCCCcEEEEec
Q 035910 96 GGGNNPNYSTYSSMAGN-PSSRKYFIDSSIKIARLCGFQGLDLSW 139 (364)
Q Consensus 96 gg~~~~~~~~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiDw 139 (364)
|-|.. ....+.....+ +.-|..+++.+++.+..-.+|||-+|=
T Consensus 32 ~~W~~-~~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPG-YPGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCC-CCceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 44443 33444444445 999999999999999988999999984
No 58
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=78.15 E-value=18 Score=34.38 Aligned_cols=93 Identities=9% Similarity=0.096 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCC----CCCC-----ccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGG----NNPN-----YSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~----~~~~-----~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
+...+.|++.+|++ |+..++++-.. ...+ ...-..-+ .+...+.|+.=|++.++.+.=.||.|+.=-|
T Consensus 103 D~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP 179 (384)
T PF14587_consen 103 DAGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISP 179 (384)
T ss_dssp SHHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE-
T ss_pred CHHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCC
Confidence 44566677777766 78888877431 0000 00001112 3567888998888888888778888876433
Q ss_pred CC--------------CcchhhHHHHHHHHHHHHhHhhh
Q 035910 143 NT--------------SWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 143 ~~--------------~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
.. +-+.+....|++.|+.+|++.+.
T Consensus 180 ~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL 218 (384)
T PF14587_consen 180 FNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGL 218 (384)
T ss_dssp -S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-
T ss_pred cCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 21 23456678999999999999875
No 59
>PRK10785 maltodextrin glucosidase; Provisional
Probab=78.09 E-value=29 Score=35.45 Aligned_cols=57 Identities=7% Similarity=-0.137 Sum_probs=38.6
Q ss_pred CChhhHHHHHH----HHHHHHHh-CCCcEEEEeccCCC-CCcchhhHHHHHHHHHHHHhHhhh
Q 035910 111 GNPSSRKYFID----SSIKIARL-CGFQGLDLSWSWAN-TSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 111 ~~~~~r~~f~~----~i~~~l~~-~~~DGidiDwe~~~-~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
.|++-|+.+++ -+..|+++ +|.||.-||--.-. .......-..|++++|+++++.++
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~p 365 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEENP 365 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhCC
Confidence 46888888886 35568886 89999999953211 111112345899999999987654
No 60
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=76.67 E-value=61 Score=29.71 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc---CCCCCC----ccccccccCChhhH--HHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIG---GGNNPN----YSTYSSMAGNPSSR--KYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig---g~~~~~----~~~~~~~~~~~~~r--~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
+......+.+++ ++.|+|||+-+= =|.+|. +..|..+--+..++ -.+-+..+.-+++ .||++||-+
T Consensus 102 D~~k~ieiakRA--k~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQ 176 (403)
T COG3867 102 DLKKAIEIAKRA--KNLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQ 176 (403)
T ss_pred hHHHHHHHHHHH--HhcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceE
Confidence 333344444333 455999999873 244321 22233222221111 1344556666666 578888865
Q ss_pred CCC---------CcchhhHHHHHHHHHHHHhH
Q 035910 142 ANT---------SWDKYNIGILFKEWRATIDL 164 (364)
Q Consensus 142 ~~~---------~~d~~~~~~~l~~lr~~l~~ 164 (364)
.+. ..+..+|..+.+.|.+..+.
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~a 208 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNAGIRA 208 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHHHhhh
Confidence 432 12223555555555544443
No 61
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.42 E-value=6.8 Score=36.47 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=25.1
Q ss_pred CcEEEEEeEEeeCCCcE----E-ecCCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 035910 48 FTHLMCGFADVNSTSYE----L-SLSPSNEKQFSNFTDTVKIKNPAITTLLSI 95 (364)
Q Consensus 48 ~Thi~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (364)
.--|+.....+.+.+.. . ..++.....+++++..+|++ +.|+++-|
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 44556665566655311 1 11223445677777777776 56666444
No 62
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=75.74 E-value=7.8 Score=37.10 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEE--c-CCCCCCcc-----------c---------cccccCC---hhhHHHHHHHHHH
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSI--G-GGNNPNYS-----------T---------YSSMAGN---PSSRKYFIDSSIK 125 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsi--g-g~~~~~~~-----------~---------~~~~~~~---~~~r~~f~~~i~~ 125 (364)
...++++++.+|++ |.|+++-| + |... ... . ..+.++. .+.++.|++.. .
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL~H~~Gr~~-~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ 157 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQLTAGFGRVC-IPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESA-V 157 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEccCcCCCcc-CccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHH-H
Confidence 35677777777776 78888877 2 4221 000 0 0011111 13455566644 4
Q ss_pred HHHhCCCcEEEEec
Q 035910 126 IARLCGFQGLDLSW 139 (364)
Q Consensus 126 ~l~~~~~DGidiDw 139 (364)
.+++-|||||+|.-
T Consensus 158 ra~~AGfDgVEih~ 171 (382)
T cd02931 158 IAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHcCCCEEEEec
Confidence 45557999999987
No 63
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=75.18 E-value=8.4 Score=36.16 Aligned_cols=47 Identities=6% Similarity=0.022 Sum_probs=27.3
Q ss_pred CCcEEEEEeEEeeCCCcE----E-ecCCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 035910 47 LFTHLMCGFADVNSTSYE----L-SLSPSNEKQFSNFTDTVKIKNPAITTLLSI 95 (364)
Q Consensus 47 ~~Thi~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (364)
.+--|+.....+.+.+.. + ...++.-..++++...+|++ |.|+++-|
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 355566666666654311 1 12233456677787777776 67888766
No 64
>PLN02877 alpha-amylase/limit dextrinase
Probab=74.96 E-value=22 Score=38.20 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 113 PSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
+.-|+-+++++.-|+++|++||.-+|.-..-. . ..|+++++++++.
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~---~----~tm~~~~~~L~~i 579 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLM---K----RTMVRAKDALQSL 579 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcccccc---H----HHHHHHHHHHHHH
Confidence 55678889999999999999999999865432 2 2345555555543
No 65
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=72.89 E-value=51 Score=31.60 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT 144 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~ 144 (364)
...+...+..+|++.|.+.++.||.|... .+ .+. .+++.+++.|.|+|+|++--|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s--~~-------------~~~-~~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN--KD-------------AWE-EIIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC--HH-------------HHH-HHHHHHHhcCCCEEEEECCCCCC
Confidence 34444444567766778899999955221 12 222 23345567899999999987764
No 66
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.36 E-value=18 Score=33.37 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
..||+.|+=+.+.+.+++.+.|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 468999999999999999899999999999665
No 67
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.85 E-value=10 Score=35.68 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCCcc----c-----------------cccccCC---hhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSI--GGGNNPNYS----T-----------------YSSMAGN---PSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi--gg~~~~~~~----~-----------------~~~~~~~---~~~r~~f~~~i~ 124 (364)
..+.++++++.+|++ |.|+++-| +|... ... . ..+.++. .+..+.|++..
T Consensus 80 ~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~-~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA- 155 (338)
T cd04733 80 DLEAFREWAAAAKAN--GALIWAQLNHPGRQS-PAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA- 155 (338)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEEccCCCcCC-CccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH-
Confidence 456677787777776 67887765 33221 000 0 0011111 12445666554
Q ss_pred HHHHhCCCcEEEEeccC
Q 035910 125 KIARLCGFQGLDLSWSW 141 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe~ 141 (364)
+.+++.|||||+|.--+
T Consensus 156 ~ra~~aGfDgVeih~a~ 172 (338)
T cd04733 156 RLAQEAGFDGVQIHAAH 172 (338)
T ss_pred HHHHHcCCCEEEEchhh
Confidence 45677899999998654
No 68
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=71.51 E-value=23 Score=32.90 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=52.0
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----------CcchhhHHHHHH
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----------SWDKYNIGILFK 156 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----------~~d~~~~~~~l~ 156 (364)
...+.+.|.|.. + +.|++.+. .+.+.|+|||||+.--|.. -.+.+...++++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 356778887733 3 34555443 4466799999999987752 134455666777
Q ss_pred HHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhH-Hhcc-cceEeee
Q 035910 157 EWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDS-IRQY-LNWVRVM 207 (364)
Q Consensus 157 ~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~-l~~~-vD~v~vm 207 (364)
++|++.... +-||+-+..+........++.. +.+. +|.+.|.
T Consensus 125 avr~~~~~~---------~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 125 AMREAVPAH---------LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHhcCCC---------cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 777766432 3466665543211111112222 2222 7888774
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.42 E-value=37 Score=31.07 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-------cchhhHHHHHHHHH
Q 035910 87 PAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS-------WDKYNIGILFKEWR 159 (364)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~-------~d~~~~~~~l~~lr 159 (364)
.+.+++++|+|.. .+.|++ +++.+++.|+|+|+|++--|... .+.+...++++++|
T Consensus 88 ~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr 150 (296)
T cd04740 88 FGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred CCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHH
Confidence 4678999998822 245554 44556777999999998766531 23334445666666
Q ss_pred HHH
Q 035910 160 ATI 162 (364)
Q Consensus 160 ~~l 162 (364)
+..
T Consensus 151 ~~~ 153 (296)
T cd04740 151 KAT 153 (296)
T ss_pred hcc
Confidence 554
No 70
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=71.37 E-value=36 Score=31.62 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=28.3
Q ss_pred hCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 035910 85 KNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN 143 (364)
Q Consensus 85 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~ 143 (364)
...+..+++.|+|.. + +.|++ .++.+++.|+|||||+.--|.
T Consensus 59 ~~~~~p~i~ql~g~~-------------~---~~~~~-aa~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 59 AEDETPISVQLFGSD-------------P---DTMAE-AAKINEELGADIIDINMGCPV 100 (319)
T ss_pred CCccceEEEEEeCCC-------------H---HHHHH-HHHHHHhCCCCEEEEECCCCH
Confidence 344567888888843 2 23333 444667789999999987664
No 71
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=70.02 E-value=40 Score=30.95 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=37.3
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-------cchhhHHHHHHHHH
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCG-FQGLDLSWSWANTS-------WDKYNIGILFKEWR 159 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiDwe~~~~~-------~d~~~~~~~l~~lr 159 (364)
+..++++|+|.. .+.|++ +++.++++| +|||+|+.--|..+ ++.+...++++.+|
T Consensus 91 ~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr 153 (301)
T PRK07259 91 DTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVK 153 (301)
T ss_pred CCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 578999998832 245554 444567888 99999988655421 23344556666666
Q ss_pred HHH
Q 035910 160 ATI 162 (364)
Q Consensus 160 ~~l 162 (364)
+..
T Consensus 154 ~~~ 156 (301)
T PRK07259 154 EVV 156 (301)
T ss_pred Hhc
Confidence 655
No 72
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=69.55 E-value=31 Score=32.10 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=28.6
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
..||+.|+-|.+.+.+.+.+.|+||+=+|+-.|
T Consensus 128 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 128 ATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 357889999999999999999999999998654
No 73
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=69.45 E-value=37 Score=31.81 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcc----
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWD---- 147 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d---- 147 (364)
...+.+.+..++++. ++.++++|+|... +.+ ..++..+++.|+|+|+|++-.|..+.+
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~ 147 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISGA 147 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCccc
Confidence 344444444454433 5889999988332 133 345555677799999999876443211
Q ss_pred --hhhHHHHHHHHHHHH
Q 035910 148 --KYNIGILFKEWRATI 162 (364)
Q Consensus 148 --~~~~~~~l~~lr~~l 162 (364)
.+.+.++++++++..
T Consensus 148 ~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 148 EVEQRYLDILRAVKSAV 164 (334)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 123556667666654
No 74
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.01 E-value=25 Score=33.41 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE---cCCCCCCc------cc------------cccccCC---hhhHHHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSI---GGGNNPNY------ST------------YSSMAGN---PSSRKYFIDSSIKI 126 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi---gg~~~~~~------~~------------~~~~~~~---~~~r~~f~~~i~~~ 126 (364)
..+.+++++..+|++ +.|+++-| |....... .. ..+.++. .+..+.|++.. ..
T Consensus 76 ~i~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~ 152 (361)
T cd04747 76 ALAGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-AD 152 (361)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HH
Confidence 345667777777776 78888777 22211000 00 0111211 22344566544 44
Q ss_pred HHhCCCcEEEEeccC
Q 035910 127 ARLCGFQGLDLSWSW 141 (364)
Q Consensus 127 l~~~~~DGidiDwe~ 141 (364)
+++-|||||+|.--+
T Consensus 153 a~~aGfDgVeih~ah 167 (361)
T cd04747 153 ARRLGFDGIELHGAH 167 (361)
T ss_pred HHHcCCCEEEEeccc
Confidence 566799999998655
No 75
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=68.85 E-value=80 Score=29.67 Aligned_cols=127 Identities=10% Similarity=0.164 Sum_probs=66.1
Q ss_pred CCcEEEEEeEEeeCCCc----EEec-CCcchhHHHHHHHHHHhhCCCcEEEEEEc--CCCC-CCccc-----------cc
Q 035910 47 LFTHLMCGFADVNSTSY----ELSL-SPSNEKQFSNFTDTVKIKNPAITTLLSIG--GGNN-PNYST-----------YS 107 (364)
Q Consensus 47 ~~Thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsig--g~~~-~~~~~-----------~~ 107 (364)
.+--|+.....+++.+. .+.+ +++.-..++++++.+|++ |.|+++-|. |... +.... ..
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~ 126 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALP 126 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSS
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--CccceeeccccccccCcccCCCCccCcccccccC
Confidence 35566777777766542 1122 222445677777778776 789997763 2111 00000 00
Q ss_pred ----------cccCC---hhhHHHHHHHHHHHHHhCCCcEEEEeccCCC---------C----------Ccchhh-HHHH
Q 035910 108 ----------SMAGN---PSSRKYFIDSSIKIARLCGFQGLDLSWSWAN---------T----------SWDKYN-IGIL 154 (364)
Q Consensus 108 ----------~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~---------~----------~~d~~~-~~~~ 154 (364)
+.++. .+..+.|++..... ++-|||||+|.--+-. . .+++.. ..+.
T Consensus 127 ~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A-~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Ei 205 (341)
T PF00724_consen 127 SPIKFMGYPPREMTEEEIEEIIEDFAQAARRA-KEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEI 205 (341)
T ss_dssp TTTTETSCEEEE--HHHHHHHHHHHHHHHHHH-HHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHH
T ss_pred cccccCCCCCeeCCHHHHHHHHHHHHHHHHHH-HHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHH
Confidence 11111 22334555554444 4479999999875411 0 122223 3356
Q ss_pred HHHHHHHHhHhhhcCCCCceEEEEEEeecCc
Q 035910 155 FKEWRATIDLEARNNSSQSQLILTAMVAYSP 185 (364)
Q Consensus 155 l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (364)
++++|+++... +.|.+.+++..
T Consensus 206 i~aIr~~vg~d---------~~v~~Rls~~~ 227 (341)
T PF00724_consen 206 IEAIREAVGPD---------FPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHTGG---------GEEEEEEETTC
T ss_pred HHHHHHHhcCC---------ceEEEEEeeec
Confidence 77777777654 56777777643
No 76
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=68.80 E-value=8.8 Score=36.21 Aligned_cols=74 Identities=11% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCcEEEEEE-------cCCCCCCcccccccc-CChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-CcchhhHHHHHHH
Q 035910 87 PAITTLLSI-------GGGNNPNYSTYSSMA-GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-SWDKYNIGILFKE 157 (364)
Q Consensus 87 ~~~kvllsi-------gg~~~~~~~~~~~~~-~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-~~d~~~~~~~l~~ 157 (364)
.|+.|+=.| || +.+.+..|+ .+++..=-+++.+++..+.|||||--|+=|-.+. +.+..+..+||..
T Consensus 139 NGVPvlGt~Ffppk~ygg----~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f~ly 214 (553)
T COG4724 139 NGVPVLGTLFFPPKNYGG----DQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQFMLY 214 (553)
T ss_pred CCCceeeeeecChhhcCc----hHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHHHHH
Confidence 388888665 33 234555555 4666667799999999999999999998775442 4566777777777
Q ss_pred HHHHHhH
Q 035910 158 WRATIDL 164 (364)
Q Consensus 158 lr~~l~~ 164 (364)
+++.-.+
T Consensus 215 ~ke~~~~ 221 (553)
T COG4724 215 SKEYAAK 221 (553)
T ss_pred HHhcccc
Confidence 7655444
No 77
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=68.14 E-value=55 Score=30.09 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----------cch
Q 035910 79 TDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS----------WDK 148 (364)
Q Consensus 79 ~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~----------~d~ 148 (364)
+..+++..+...++.++.|..+ + +.|++ +++.+++.++|+|+|++-.|... .+.
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~------------~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~ 153 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYN------------K---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDP 153 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCC------------H---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCH
Confidence 3345554445778899987311 1 34444 44555677899999999887641 344
Q ss_pred hhHHHHHHHHHHHH
Q 035910 149 YNIGILFKEWRATI 162 (364)
Q Consensus 149 ~~~~~~l~~lr~~l 162 (364)
+.+.++++.+|+..
T Consensus 154 ~~~~~iv~~v~~~~ 167 (299)
T cd02940 154 ELVEEICRWVREAV 167 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666777776654
No 78
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=68.01 E-value=46 Score=32.29 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----------cchhh
Q 035910 81 TVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS----------WDKYN 150 (364)
Q Consensus 81 ~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~----------~d~~~ 150 (364)
.+++..+...++++|.|... + +.++ ..+..+++.++|+|+|+.-.|... .+.+.
T Consensus 92 ~~~~~~~~~p~i~si~g~~~------------~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~ 155 (420)
T PRK08318 92 RVKRDYPDRALIASIMVECN------------E---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPEL 155 (420)
T ss_pred HHHhhCCCceEEEEeccCCC------------H---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHH
Confidence 45444455678899987411 1 2333 455566777899999999988621 35556
Q ss_pred HHHHHHHHHHHH
Q 035910 151 IGILFKEWRATI 162 (364)
Q Consensus 151 ~~~~l~~lr~~l 162 (364)
+.++++.+++..
T Consensus 156 ~~~i~~~v~~~~ 167 (420)
T PRK08318 156 VEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHHHhcc
Confidence 667777776654
No 79
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=67.31 E-value=33 Score=34.09 Aligned_cols=131 Identities=11% Similarity=0.068 Sum_probs=70.9
Q ss_pred HHHHHHHHhhCCCcEEEEEE---cCCCCCCcccc---ccc--cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-C-
Q 035910 76 SNFTDTVKIKNPAITTLLSI---GGGNNPNYSTY---SSM--AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-S- 145 (364)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsi---gg~~~~~~~~~---~~~--~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-~- 145 (364)
..+++.+++.+|++|++.|- -+|.- .+..+ ..+ ...++-++.+++=++++++.|.=-||+|+=--+.. |
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMK-tn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~ 234 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMK-TNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPD 234 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGB-TTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCC
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHc-cCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCC
Confidence 45677788888999999875 22322 01111 111 12346789999999999999998899986422211 1
Q ss_pred -------------cchhhHHHHHHH-HHHHHhHhhhcCCCCceEEEEEEeec--CcccccCCCChhHHhcccceEeeecc
Q 035910 146 -------------WDKYNIGILFKE-WRATIDLEARNNSSQSQLILTAMVAY--SPLSTEAAYPVDSIRQYLNWVRVMTA 209 (364)
Q Consensus 146 -------------~d~~~~~~~l~~-lr~~l~~~~~~~~~~~~~~ls~a~~~--~~~~~~~~~~~~~l~~~vD~v~vm~Y 209 (364)
-..+....||+. |+-+|++.+. +..-.++...-.. .+.....-+.-++..+|+|-+-+..|
T Consensus 235 ~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~---g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY 311 (496)
T PF02055_consen 235 NGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGL---GKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWY 311 (496)
T ss_dssp GGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT----TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEET
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCC---CCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECC
Confidence 123456788987 9999987642 1111223322110 01111001222445678888888887
Q ss_pred c
Q 035910 210 G 210 (364)
Q Consensus 210 d 210 (364)
.
T Consensus 312 ~ 312 (496)
T PF02055_consen 312 G 312 (496)
T ss_dssp T
T ss_pred C
Confidence 4
No 80
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=67.12 E-value=89 Score=28.72 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-cchhhH
Q 035910 74 QFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCG-FQGLDLSWSWANTS-WDKYNI 151 (364)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiDwe~~~~~-~d~~~~ 151 (364)
....+++.++++ +..++..+-.+.. +.. .-+.+.-+.+...+++-|+..+ +|||-++.=..... ...+-=
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~--P~G----~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~E 117 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAE--PGG----PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGE 117 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE---SEE-----B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeec--CCC----cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCch
Confidence 345566666655 7888888754333 111 1245666788899999999986 99999998543321 222234
Q ss_pred HHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEee
Q 035910 152 GILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRV 206 (364)
Q Consensus 152 ~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~v 206 (364)
..||+++|+.+... .-|.+++-...+.. +.+.+.+|.+..
T Consensus 118 G~Ll~rvR~~vGp~---------vpI~~tlDlHaNvs------~~mv~~ad~~~~ 157 (292)
T PF07364_consen 118 GDLLRRVRAIVGPD---------VPIAATLDLHANVS------PRMVEAADIIVG 157 (292)
T ss_dssp HHHHHHHHHHHTTT---------SEEEEEE-TT----------HHHHHH-SEEEE
T ss_pred HHHHHHHHHHhCCC---------CeEEEEeCCCCCcc------HHHHHhCCEEEE
Confidence 57999999999885 34555544333322 467777886643
No 81
>PRK03705 glycogen debranching enzyme; Provisional
Probab=66.66 E-value=28 Score=35.96 Aligned_cols=66 Identities=12% Similarity=0.234 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC-CCCC---Cc----------cc------------c-----ccccCChhhHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGG-GNNP---NY----------ST------------Y-----SSMAGNPSSRKYFID 121 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg-~~~~---~~----------~~------------~-----~~~~~~~~~r~~f~~ 121 (364)
..++.+++.++++ |+||++=+-= .... .. .. + .--..++.-|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688888888776 8999987621 1000 00 00 0 011246788999999
Q ss_pred HHHHHHHhCCCcEEEEecc
Q 035910 122 SSIKIARLCGFQGLDLSWS 140 (364)
Q Consensus 122 ~i~~~l~~~~~DGidiDwe 140 (364)
++.-|++++++||+-||--
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999964
No 82
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.30 E-value=19 Score=34.04 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=68.3
Q ss_pred CcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCC-CC---------ccc---------cccccCC---hhhHHHHHHHHH
Q 035910 69 PSNEKQFSNFTDTVKIKNPAITTLLSI--GGGNN-PN---------YST---------YSSMAGN---PSSRKYFIDSSI 124 (364)
Q Consensus 69 ~~~~~~~~~~~~~~k~~~~~~kvllsi--gg~~~-~~---------~~~---------~~~~~~~---~~~r~~f~~~i~ 124 (364)
++.-..+++++..+|++ |.|+++-| +|... +. ++. ..+.++. .+..+.|++...
T Consensus 74 d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 151 (353)
T cd04735 74 DSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATR 151 (353)
T ss_pred hhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 44557788888888876 67888776 23211 00 000 0011211 234456666554
Q ss_pred HHHHhCCCcEEEEeccC---------CCC----------Ccchhh-HHHHHHHHHHHHhHh-hhcCCCCceEEEEEEeec
Q 035910 125 KIARLCGFQGLDLSWSW---------ANT----------SWDKYN-IGILFKEWRATIDLE-ARNNSSQSQLILTAMVAY 183 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe~---------~~~----------~~d~~~-~~~~l~~lr~~l~~~-~~~~~~~~~~~ls~a~~~ 183 (364)
. +++.|||||+|.--+ |.. -+++.. ..+.++.+|+++... .. ++.|.+.+.+
T Consensus 152 ~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~------~~~v~~R~s~ 224 (353)
T cd04735 152 R-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADK------DFILGYRFSP 224 (353)
T ss_pred H-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCC------CceEEEEECc
Confidence 4 556899999998632 211 112222 336777777777521 01 2567766664
Q ss_pred CcccccCCCC-------hhHHhcc-cceEeeeccc
Q 035910 184 SPLSTEAAYP-------VDSIRQY-LNWVRVMTAG 210 (364)
Q Consensus 184 ~~~~~~~~~~-------~~~l~~~-vD~v~vm~Yd 210 (364)
.... ..+.. .+.|.+. +|+|.|....
T Consensus 225 ~~~~-~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 225 EEPE-EPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred cccc-CCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 3211 11221 2334333 7999997643
No 83
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=65.92 E-value=14 Score=37.57 Aligned_cols=83 Identities=14% Similarity=0.027 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCcEEEEE---EcCCCCCCccccccccCChhhHHHHHHHHHHHH-HhCCCcEEEEeccCCCCCcchhhHH
Q 035910 77 NFTDTVKIKNPAITTLLS---IGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIA-RLCGFQGLDLSWSWANTSWDKYNIG 152 (364)
Q Consensus 77 ~~~~~~k~~~~~~kvlls---igg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l-~~~~~DGidiDwe~~~~~~d~~~~~ 152 (364)
.+++.+|++||++|+... .-||-. .. +..-..++..-. .-++++| -.+.-.|++||+-.+- .++..=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~--~g-~~~~~~~~~~~a---~Y~~~wl~ga~~~~gl~idYvg~~--NEr~~~~ 187 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVG--NG-WNWPYDNPQLTA---YYVVSWLLGAKKTHGLDIDYVGIW--NERGFDV 187 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGG--TT-SS-TTSSHHHHH---HHHHHHHHHHHHHH-----EE-S---TTS---H
T ss_pred hhHHHHHhhCCCCeEEEeccCCCcccc--CC-CCCcccchhhhh---HHHHHHHHHHHHHhCCCceEechh--hccCCCh
Confidence 466789999999998743 344543 11 111111222222 2334544 1122345667765432 3333335
Q ss_pred HHHHHHHHHHhHhhh
Q 035910 153 ILFKEWRATIDLEAR 167 (364)
Q Consensus 153 ~~l~~lr~~l~~~~~ 167 (364)
..+|.||..|++.+-
T Consensus 188 ~~ik~lr~~l~~~gy 202 (669)
T PF02057_consen 188 NYIKWLRKALNSNGY 202 (669)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHhhccc
Confidence 789999999988753
No 84
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=65.45 E-value=9.3 Score=34.10 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=30.9
Q ss_pred eEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHH-cCCCCCceEEEeeeceee
Q 035910 203 WVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIE-DGLSADKLVVGLPFYGYA 262 (364)
Q Consensus 203 ~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~-~g~p~~KlvlGlp~yG~~ 262 (364)
.+|+|+|||.|.. ..+|-.+-.. ....++.+.+++.. .| ++++|+| ||++
T Consensus 88 n~nv~~~DYSGyG--~S~G~psE~n---~y~Di~avye~Lr~~~g-~~~~Iil----~G~S 138 (258)
T KOG1552|consen 88 NCNVVSYDYSGYG--RSSGKPSERN---LYADIKAVYEWLRNRYG-SPERIIL----YGQS 138 (258)
T ss_pred cceEEEEeccccc--ccCCCccccc---chhhHHHHHHHHHhhcC-CCceEEE----EEec
Confidence 5799999999862 3333333321 11267777777764 45 7888776 5654
No 85
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=64.79 E-value=60 Score=30.08 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-----
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCG-FQGLDLSWSWANTS----- 145 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiDwe~~~~~----- 145 (364)
...+.+.+..+++..++..+++||-|.+. +.+. .+++.++..+ .|.|+|+.--|..+
T Consensus 76 ~~~~~~~i~~~~~~~~~~pvI~Si~G~~~----------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~ 138 (310)
T PRK02506 76 FDYYLDYVLELQKKGPNKPHFLSVVGLSP----------------EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQI 138 (310)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEEeCcH----------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCcccc
Confidence 34444334445554456888999977442 2232 3344456777 89999999877432
Q ss_pred -cchhhHHHHHHHHHHHH
Q 035910 146 -WDKYNIGILFKEWRATI 162 (364)
Q Consensus 146 -~d~~~~~~~l~~lr~~l 162 (364)
.|.+.+.++++.+|+..
T Consensus 139 g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 139 AYDFETTEQILEEVFTYF 156 (310)
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 24455667777777665
No 86
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.34 E-value=35 Score=35.52 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=35.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CcchhhHHHHHHHHHH
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT--SWDKYNIGILFKEWRA 160 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~--~~d~~~~~~~l~~lr~ 160 (364)
.++.-|+-+++++.-|++++++||+-||.-.... .........|+++|++
T Consensus 314 ~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 314 SHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 3677888999999999999999999999643221 1111223467777776
No 87
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=64.10 E-value=34 Score=32.61 Aligned_cols=91 Identities=16% Similarity=0.282 Sum_probs=48.1
Q ss_pred CcEEEEEeEEeeCCCcE-----E-ecCCcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCC---------ccc-----
Q 035910 48 FTHLMCGFADVNSTSYE-----L-SLSPSNEKQFSNFTDTVKIKNPAITTLLSI--GGGNNPN---------YST----- 105 (364)
Q Consensus 48 ~Thi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~k~~~~~~kvllsi--gg~~~~~---------~~~----- 105 (364)
+--|+.....+.+++.. + ...++.-+.+++++..+|++ |.|+++-| +|..... +..
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 44555666666554311 1 11233456677787777776 78888776 3321100 000
Q ss_pred ------cccccCC---hhhHHHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 106 ------YSSMAGN---PSSRKYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 106 ------~~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
..+.++. .+..+.|++... .+++-|||||+|.--+
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccc
Confidence 0011111 124556776544 4556799999998765
No 88
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=63.83 E-value=14 Score=28.82 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
|.-=++-.|+.-+ . -+....|... ++=++.+.++|++.|++.--++|++.+. .+.+.|++.++++-+.+.+.++
T Consensus 53 GaDGV~v~GC~~g--e--CHy~~GN~ka-~rR~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lGp 126 (132)
T COG1908 53 GADGVLVAGCKIG--E--CHYISGNYKA-KRRMELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELGP 126 (132)
T ss_pred CCCeEEEeccccc--c--eeeeccchHH-HHHHHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhCC
Confidence 5666666776443 1 2222233222 2225667778888899998888888776 8889999999999999988764
No 89
>PRK03995 hypothetical protein; Provisional
Probab=63.12 E-value=22 Score=32.18 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=42.2
Q ss_pred CCcEEEEEEcCCCCCCcccccccc-----------CChhhHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCcchhhHHH
Q 035910 87 PAITTLLSIGGGNNPNYSTYSSMA-----------GNPSSRKYFIDSSIKIARL--CGFQGLDLSWSWANTSWDKYNIGI 153 (364)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~-----------~~~~~r~~f~~~i~~~l~~--~~~DGidiDwe~~~~~~d~~~~~~ 153 (364)
...++++.|||.-. ...|+.++ .+-..-.-=-+.+.+.+++ -++|.+-|||....+ .++..+..
T Consensus 179 ~~~~~~iGiGGgHY--apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~ 255 (267)
T PRK03995 179 EKFKPAIGIGGGHY--APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIE 255 (267)
T ss_pred cCCCEEEEECCCCc--cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHH
Confidence 56889999999765 44443332 2211100001224455555 368999999987665 78888888
Q ss_pred HHHHH
Q 035910 154 LFKEW 158 (364)
Q Consensus 154 ~l~~l 158 (364)
+++++
T Consensus 256 ~le~~ 260 (267)
T PRK03995 256 FLEEL 260 (267)
T ss_pred HHHHC
Confidence 77765
No 90
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=63.01 E-value=50 Score=31.81 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=65.3
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCC-CCcc----------------------ccccccCChhhHHHHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGGNN-PNYS----------------------TYSSMAGNPSSRKYFIDSSIKIA 127 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~~~-~~~~----------------------~~~~~~~~~~~r~~f~~~i~~~l 127 (364)
.+..++.++..++++ |+|.-|-+.-..- +++. .+.-=+++|+.|+-+.+.+.+++
T Consensus 102 FP~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 102 FPNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp STTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH
Confidence 456688888888877 7777666521100 0010 11122467888999999999999
Q ss_pred HhCCCcEEEEeccCCCC----Cc---chhhHH----HHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhH
Q 035910 128 RLCGFQGLDLSWSWANT----SW---DKYNIG----ILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDS 196 (364)
Q Consensus 128 ~~~~~DGidiDwe~~~~----~~---d~~~~~----~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~ 196 (364)
+++|+|.|-+|+..... +. ....++ +++++||++++. +.+......+ .+.|+ .
T Consensus 180 ~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~----------v~iE~CssGG-----~R~D~-g 243 (394)
T PF02065_consen 180 REWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPD----------VLIENCSSGG-----GRFDP-G 243 (394)
T ss_dssp HHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTT----------SEEEE-BTTB-----TTTSH-H
T ss_pred HhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCC----------cEEEeccCCC-----Ccccc-c
Confidence 99999999999975432 11 122333 456666665554 5676664422 23554 3
Q ss_pred HhcccceE
Q 035910 197 IRQYLNWV 204 (364)
Q Consensus 197 l~~~vD~v 204 (364)
+..+.+.+
T Consensus 244 ~l~~~~~~ 251 (394)
T PF02065_consen 244 MLYYTPQS 251 (394)
T ss_dssp HHCCSSEE
T ss_pred hheecccc
Confidence 33555544
No 91
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=61.84 E-value=37 Score=29.57 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=39.9
Q ss_pred HhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----------CcchhhH
Q 035910 83 KIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----------SWDKYNI 151 (364)
Q Consensus 83 k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----------~~d~~~~ 151 (364)
.....+.+++++|+|.. + +.|++. ++.+++.|||||+|+.-.|.. ..+....
T Consensus 49 ~~~~~~~p~~~qi~g~~-------------~---~~~~~a-a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~ 111 (231)
T cd02801 49 TRNPEERPLIVQLGGSD-------------P---ETLAEA-AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELV 111 (231)
T ss_pred ccCccCCCEEEEEcCCC-------------H---HHHHHH-HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHH
Confidence 33456789999999833 2 344443 344556799999999766532 0233445
Q ss_pred HHHHHHHHHHHh
Q 035910 152 GILFKEWRATID 163 (364)
Q Consensus 152 ~~~l~~lr~~l~ 163 (364)
.++++++|+...
T Consensus 112 ~eii~~v~~~~~ 123 (231)
T cd02801 112 AEIVRAVREAVP 123 (231)
T ss_pred HHHHHHHHHhcC
Confidence 567777776654
No 92
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=60.20 E-value=1.3e+02 Score=27.97 Aligned_cols=75 Identities=13% Similarity=0.032 Sum_probs=45.9
Q ss_pred HHHHHHhhC-CCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----CcchhhH
Q 035910 78 FTDTVKIKN-PAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----SWDKYNI 151 (364)
Q Consensus 78 ~~~~~k~~~-~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----~~d~~~~ 151 (364)
+.+.+++.. .+..++++|+|... + . .++.-+.|++.+-.+ .. ..|+|+|++--|.. .++.+.+
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~--~-~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~ 185 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKD--T-P------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEAL 185 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCC--C-c------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHH
Confidence 333344332 36889999998542 1 1 122234455444443 23 38999999976653 2456678
Q ss_pred HHHHHHHHHHHh
Q 035910 152 GILFKEWRATID 163 (364)
Q Consensus 152 ~~~l~~lr~~l~ 163 (364)
.++++.+|+...
T Consensus 186 ~~iv~av~~~~~ 197 (327)
T cd04738 186 RELLTAVKEERN 197 (327)
T ss_pred HHHHHHHHHHHh
Confidence 889999998875
No 93
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=59.58 E-value=69 Score=30.44 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=25.7
Q ss_pred CcEEEEEeEEeeCCCcE----E-ecCCcchhHHHHHHHHHHhhCCCcEEEEEE
Q 035910 48 FTHLMCGFADVNSTSYE----L-SLSPSNEKQFSNFTDTVKIKNPAITTLLSI 95 (364)
Q Consensus 48 ~Thi~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~k~~~~~~kvllsi 95 (364)
+--|+.....+++.+.. . ...+.....++++++.+|++ |.|+++-|
T Consensus 49 ~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~--Ga~i~~QL 99 (362)
T PRK10605 49 AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAE--GGHIAVQL 99 (362)
T ss_pred CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhC--CCEEEEec
Confidence 34455555556554311 1 11222345667777777776 78888777
No 94
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.32 E-value=1.1e+02 Score=25.79 Aligned_cols=181 Identities=19% Similarity=0.186 Sum_probs=100.8
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCccccc
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTE 189 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~ 189 (364)
+-+|-+|+.-+..+ +-|.|=||+ ..|...+=..||.=.++++|+..+.. ..+|+++.--|....
T Consensus 4 LvSPin~eEA~eAi-----eGGAdIiDV--KNP~EGSLGANFPWvIr~i~Ev~p~d---------~~vSAT~GDvpYKPG 67 (235)
T COG1891 4 LVSPINREEAIEAI-----EGGADIIDV--KNPAEGSLGANFPWVIREIREVVPED---------QEVSATVGDVPYKPG 67 (235)
T ss_pred eeccCCHHHHHHHh-----hCCCceEec--cCcccCcccCCChHHHHHHHHhCccc---------eeeeeeecCCCCCCc
Confidence 33455555544433 235555544 66765566789999999999998875 578887764443322
Q ss_pred CCCChh---HHhcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHH-----cCCCCCceEEEeeecee
Q 035910 190 AAYPVD---SIRQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIE-----DGLSADKLVVGLPFYGY 261 (364)
Q Consensus 190 ~~~~~~---~l~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~-----~g~p~~KlvlGlp~yG~ 261 (364)
. ..+. ....-+||+-+--|+.. +-+++++-+.. +-+.++|+++.- -|+-
T Consensus 68 T-~slAalGaav~GaDYiKVGLYg~k---------------------n~~eA~e~m~~vvrAVkd~d~~k~VVAa-GYaD 124 (235)
T COG1891 68 T-ASLAALGAAVAGADYIKVGLYGTK---------------------NEEEALEVMKNVVRAVKDFDPSKKVVAA-GYAD 124 (235)
T ss_pred h-HHHHHHHhHhhCCceEEEeecccc---------------------cHHHHHHHHHHHHHHHhccCCCceEEec-cccc
Confidence 1 1122 23345799999888633 22333333221 347888988864 3443
Q ss_pred eeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEeccceeeEEE-eCCEEEEECCHHHHHHHHHHHH
Q 035910 262 AWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNSTYVVNYCS-IGKIWFGFDDVEAVRVKVSYAK 340 (364)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~~~~~i~ydd~~S~~~K~~~~~ 340 (364)
.++. +.++--.+.+.....| ..+. +..-.. +++..+-|.+.+-+++-++.++
T Consensus 125 a~Rv--------------------gsv~Pl~~P~vaa~ag--~Dva-----MvDTaiKDGkslFdfm~~e~l~eFvd~Ah 177 (235)
T COG1891 125 AHRV--------------------GSVSPLLLPEVAAEAG--ADVA-----MVDTAIKDGKSLFDFMDEEELEEFVDLAH 177 (235)
T ss_pred hhhc--------------------cCcCccccHHHHHhcC--CCEE-----EEecccccchhHHhhhcHHHHHHHHHHHH
Confidence 3322 1111122223222333 1111 111111 5677778999999999999999
Q ss_pred hCCCCeEEEEeccCCC
Q 035910 341 EKKLRGYYMWEVSYDH 356 (364)
Q Consensus 341 ~~glgGv~vW~l~~Dd 356 (364)
++||--...=++..+|
T Consensus 178 ~hGL~~AlAGs~~~eh 193 (235)
T COG1891 178 EHGLEVALAGSLKFEH 193 (235)
T ss_pred HcchHHHhcccccccc
Confidence 9998433333333333
No 95
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=57.97 E-value=41 Score=31.32 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=39.0
Q ss_pred CCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-----------cchhhHHHH
Q 035910 86 NPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS-----------WDKYNIGIL 154 (364)
Q Consensus 86 ~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~-----------~d~~~~~~~ 154 (364)
.....+.+.|+|.. + +.|+ ..++.+.++|+|+|||+.--|... .+.+...++
T Consensus 52 ~~e~p~~vQl~g~~-------------p---~~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~i 114 (318)
T TIGR00742 52 PEESPVALQLGGSD-------------P---NDLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADC 114 (318)
T ss_pred CCCCcEEEEEccCC-------------H---HHHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHH
Confidence 33566778888733 2 2333 345566778999999999877531 344556677
Q ss_pred HHHHHHHH
Q 035910 155 FKEWRATI 162 (364)
Q Consensus 155 l~~lr~~l 162 (364)
+++++++.
T Consensus 115 v~av~~~~ 122 (318)
T TIGR00742 115 VKAMQEAV 122 (318)
T ss_pred HHHHHHHh
Confidence 77777765
No 96
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=57.93 E-value=68 Score=28.01 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCcc-c----cc----cccCChhhHHHHHHHHHHHHHhCCCcEEEEecc
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYS-T----YS----SMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWS 140 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~-~----~~----~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe 140 (364)
-..+++.+++.+|...|..+|++---+--+ .+ . .. .-.+.-+.-..+++.++++.++-|+++||+ |.
T Consensus 98 y~dNlr~iv~~lks~~~~~riIlitPpp~d--e~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl-ws 173 (245)
T KOG3035|consen 98 YKDNLRKIVSHLKSLSPETRIILITPPPVD--EEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL-WS 173 (245)
T ss_pred HHHHHHHHHHHhhccCCcceEEEecCCCcC--HHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH-Hh
Confidence 346678888888888888888866544332 11 1 11 111344566778999999999999999999 53
No 97
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=56.72 E-value=37 Score=31.80 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=37.4
Q ss_pred CCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----------CcchhhHHHHH
Q 035910 87 PAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----------SWDKYNIGILF 155 (364)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----------~~d~~~~~~~l 155 (364)
....+.+.|+|.. + +.|++ .+..+++.|||||||+.--|.. -.+.+...+++
T Consensus 63 ~e~p~~vQl~g~~-------------p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv 125 (333)
T PRK11815 63 EEHPVALQLGGSD-------------P---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCV 125 (333)
T ss_pred CCCcEEEEEeCCC-------------H---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHH
Confidence 3567788888833 3 24443 4556778899999999877642 12334445666
Q ss_pred HHHHHHH
Q 035910 156 KEWRATI 162 (364)
Q Consensus 156 ~~lr~~l 162 (364)
+.+|++.
T Consensus 126 ~avr~~v 132 (333)
T PRK11815 126 KAMKDAV 132 (333)
T ss_pred HHHHHHc
Confidence 6666655
No 98
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=56.00 E-value=1.1e+02 Score=28.14 Aligned_cols=59 Identities=19% Similarity=0.095 Sum_probs=38.6
Q ss_pred CCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhC--CCcEEEEeccCCCCC------cchhhHHHHHHHH
Q 035910 87 PAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLC--GFQGLDLSWSWANTS------WDKYNIGILFKEW 158 (364)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiDwe~~~~~------~d~~~~~~~l~~l 158 (364)
++..++++|+|. . +.+++.+..+.+.. +.|+|+|+.--|... .+.+.+.++++.+
T Consensus 90 ~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 90 SAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred cCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 467788999872 1 34554444444333 689999999877631 2456677777777
Q ss_pred HHHH
Q 035910 159 RATI 162 (364)
Q Consensus 159 r~~l 162 (364)
|+..
T Consensus 153 ~~~~ 156 (294)
T cd04741 153 KAAY 156 (294)
T ss_pred HHhc
Confidence 7765
No 99
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=55.28 E-value=45 Score=26.59 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
.-..+.-+++.+++. |+++++-+---+ ...+...--+.+.|+.+.+.|...++++||.=+|+
T Consensus 34 Ey~Dl~l~L~~~k~~--g~~~lfVi~PvN---g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 34 EYDDLQLLLDVCKEL--GIDVLFVIQPVN---GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHHHT--T-EEEEEE-------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred cHHHHHHHHHHHHHc--CCceEEEecCCc---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 345566677777777 689887774322 12222233378999999999999999999966666
No 100
>PLN02411 12-oxophytodienoate reductase
Probab=54.53 E-value=38 Score=32.58 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=16.5
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSI 95 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi 95 (364)
....++++++.+|++ |.|+++-|
T Consensus 85 ~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 85 QVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEec
Confidence 345677777777776 78888776
No 101
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=54.18 E-value=84 Score=29.49 Aligned_cols=91 Identities=8% Similarity=0.089 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc---CCCCCC----cccccccc--CChhhHHHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIG---GGNNPN----YSTYSSMA--GNPSSRKYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig---g~~~~~----~~~~~~~~--~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
+......+.+++|+. |+||||-+- =|.+|. +..|..+- .=.+....+..++++-|+.. |+..||=+
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEE
Confidence 344445555556665 899999983 243322 23333321 01234445667777777775 56677644
Q ss_pred CCC------------CcchhhHHHHHHHHHHHHhHhh
Q 035910 142 ANT------------SWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 142 ~~~------------~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
.+. ..+..+|..|++.-.++.++..
T Consensus 131 VGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~ 167 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVD 167 (332)
T ss_dssp ESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHS
T ss_pred eCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcC
Confidence 332 3556677777777667776644
No 102
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.29 E-value=31 Score=32.38 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=16.7
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEE
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSI 95 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsi 95 (364)
.-..++++++.+|++ +.|+++-+
T Consensus 75 ~i~~lr~la~~vh~~--ga~~~~QL 97 (338)
T cd02933 75 QVEGWKKVTDAVHAK--GGKIFLQL 97 (338)
T ss_pred HHHHHHHHHHHHHhc--CCeEEEEc
Confidence 345677787777776 78888776
No 103
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=53.11 E-value=1.4e+02 Score=28.13 Aligned_cols=76 Identities=12% Similarity=0.027 Sum_probs=47.9
Q ss_pred HHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----CcchhhHH
Q 035910 78 FTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----SWDKYNIG 152 (364)
Q Consensus 78 ~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----~~d~~~~~ 152 (364)
+.+.+++...++.+++||+|... ......-+.|++.+.++ .. +.|+++|++--|.. .++.+.+.
T Consensus 127 ~~~~l~~~~~~~pvivsI~~~~~---------~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~ 195 (344)
T PRK05286 127 LAERLKKAYRGIPLGINIGKNKD---------TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALD 195 (344)
T ss_pred HHHHHHHhcCCCcEEEEEecCCC---------CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHH
Confidence 33334432246889999988421 11122345666555554 33 48999999977653 24566788
Q ss_pred HHHHHHHHHHhH
Q 035910 153 ILFKEWRATIDL 164 (364)
Q Consensus 153 ~~l~~lr~~l~~ 164 (364)
++++++|+..+.
T Consensus 196 eiv~aVr~~~~~ 207 (344)
T PRK05286 196 ELLAALKEAQAE 207 (344)
T ss_pred HHHHHHHHHHhc
Confidence 899999988863
No 104
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=52.98 E-value=7 Score=30.14 Aligned_cols=19 Identities=21% Similarity=0.567 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCCCceEEEe
Q 035910 238 RITQWIEDGLSADKLVVGL 256 (364)
Q Consensus 238 ~v~~~~~~g~p~~KlvlGl 256 (364)
..+.++++|+|++.||||+
T Consensus 79 Ia~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 79 IAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHHTT--GGGEEETT
T ss_pred HHHHHHHcCCCHHHEEEcc
Confidence 3467889999999999996
No 105
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=52.98 E-value=1.7e+02 Score=26.21 Aligned_cols=74 Identities=5% Similarity=-0.002 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHhhCCCcEEE--EEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHh--------CCCcEEEEecc
Q 035910 71 NEKQFSNFTDTVKIKNPAITTL--LSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARL--------CGFQGLDLSWS 140 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvl--lsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~--------~~~DGidiDwe 140 (364)
....+...+..|+ +.+++|++ +..+- . .+.+ ....++|-++..= +++|||-|| |
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Y-g---~R~~----------~~V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E 114 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSY-G---SRPL----------SEVKADIDTYASWYGQSEDYGYRVDGIFFD-E 114 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEccc-c---CCCH----------HHHHHHHHHHhhccccccCCCcccceEEEe-c
Confidence 3455666666564 45689887 33222 1 1222 2333444444433 789999999 7
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhH
Q 035910 141 WANTSWDKYNIGILFKEWRATIDL 164 (364)
Q Consensus 141 ~~~~~~d~~~~~~~l~~lr~~l~~ 164 (364)
-|... .....++.|....+.
T Consensus 115 ~p~~~----~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 115 APNDY----ANLPYYQNLYNYVKS 134 (253)
T ss_pred CCCcH----HHHHHHHHHHHHHHh
Confidence 66543 444555566555555
No 106
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=52.79 E-value=54 Score=29.49 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN 143 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~ 143 (364)
-++.+.+++.+|++ |+|+++.+-- ..|+-|.+.+.+++.+.|+||+=+|+-.|.
T Consensus 65 Fpdp~~~i~~l~~~--g~~~~~~~~P----------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 65 FPNPKSMIDELHDN--GVKLVLWIDP----------------YIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CCCHHHHHHHHHHC--CCEEEEEeCh----------------hHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 34456788888886 7999997753 117778888888878999999999997654
No 107
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=52.26 E-value=63 Score=30.01 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.8
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN 143 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~ 143 (364)
..||+.|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 3689999999999999988999999999987664
No 108
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=52.10 E-value=25 Score=25.70 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=38.0
Q ss_pred HHHhCCCcEEEEeccC----CCC----------CcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCC
Q 035910 126 IARLCGFQGLDLSWSW----ANT----------SWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAA 191 (364)
Q Consensus 126 ~l~~~~~DGidiDwe~----~~~----------~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (364)
++.+++.|.-.+-||- |.. ....+.+..+++++.+.+++..+ ...||+...... .
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP------~~pvt~g~~~~~-----~ 69 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP------SQPVTSGFWGGD-----W 69 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T------TS-EE--B--S------T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC------CCcEEeecccCC-----H
Confidence 3566677766677752 220 11346788999999999998765 245665543221 1
Q ss_pred CChhHHh-cccceEeeecc
Q 035910 192 YPVDSIR-QYLNWVRVMTA 209 (364)
Q Consensus 192 ~~~~~l~-~~vD~v~vm~Y 209 (364)
-.+..+. ..+|++.+..|
T Consensus 70 ~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp THHHHS--TT-SSEEB-EE
T ss_pred HHHHHhchhcCCEEeeecC
Confidence 1244555 78898877655
No 109
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.77 E-value=56 Score=30.32 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=28.1
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
.||+.|+-|.+.+.+.+.+.|+||+=+|...+
T Consensus 138 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 138 TNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 58999999998888999999999999998654
No 110
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=51.03 E-value=99 Score=29.03 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=29.3
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN 143 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~ 143 (364)
..||+.|+=+.+.+.+++.+.|+||+=+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 4688899988888888899999999999987664
No 111
>PRK01060 endonuclease IV; Provisional
Probab=50.83 E-value=36 Score=30.75 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
+...++.+++.|||||+|.-+.|........-...++++|+.+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 55688999999999999977655431121223346888888888765
No 112
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=49.91 E-value=30 Score=25.40 Aligned_cols=56 Identities=4% Similarity=0.007 Sum_probs=43.1
Q ss_pred ccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC---------CcchhhHHHHHHHHHHHHhH
Q 035910 109 MAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT---------SWDKYNIGILFKEWRATIDL 164 (364)
Q Consensus 109 ~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~---------~~d~~~~~~~l~~lr~~l~~ 164 (364)
........+.-...+.+.+++++++=--+|-|+..+ .+++.+|..|+++|...++.
T Consensus 17 ~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~~ 81 (88)
T PF04468_consen 17 LERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFKT 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhCc
Confidence 333444556677888888999998877778887653 47889999999999999975
No 113
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=49.83 E-value=69 Score=28.09 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=62.9
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCC
Q 035910 112 NPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAA 191 (364)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (364)
|.+....|+..+.+-..-| .+-.|.|....+++.=.+.+++||+.|++.+. +..|.+.=.+++.
T Consensus 87 d~~~~adYl~~l~~aA~P~-----~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~------~v~iVADEWCNT~----- 150 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAPF-----KLRIEGPMDAGSREAQIEALAELREELDRRGI------NVEIVADEWCNTL----- 150 (248)
T ss_dssp -HHHHHHHHHHHHHHHTTS------EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--------EEEEE-TT--SH-----
T ss_pred CHHHHHHHHHHHHHhcCCC-----eeeeeCCcCCCChHHHHHHHHHHHHHHHhcCC------CCeEEeehhcCCH-----
Confidence 6667777777777777654 46679998888999999999999999999864 2334332222111
Q ss_pred CChhHH--hcccceEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCC
Q 035910 192 YPVDSI--RQYLNWVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGL 247 (364)
Q Consensus 192 ~~~~~l--~~~vD~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~ 247 (364)
=|++.. ++.+|+|-|.|=|+.|-- ++-+++.|-.+.|+
T Consensus 151 eDI~~F~da~A~dmVQIKtPDLGgi~------------------ntieAvlyCk~~gv 190 (248)
T PF07476_consen 151 EDIREFADAKAADMVQIKTPDLGGIN------------------NTIEAVLYCKEHGV 190 (248)
T ss_dssp HHHHHHHHTT-SSEEEE-GGGGSSTH------------------HHHHHHHHHHHTT-
T ss_pred HHHHHHHhcCCcCEEEecCCCccchh------------------hHHHHHHHHHhcCC
Confidence 133333 457899999999987641 56667777777654
No 114
>PRK14866 hypothetical protein; Provisional
Probab=49.17 E-value=48 Score=32.35 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=41.3
Q ss_pred CCcEEEEEEcCCCCCCccccc-----------cccCChhhHHHH-HH-HHHHHHHhCCCcEEEEeccCCCCCcchhhHHH
Q 035910 87 PAITTLLSIGGGNNPNYSTYS-----------SMAGNPSSRKYF-ID-SSIKIARLCGFQGLDLSWSWANTSWDKYNIGI 153 (364)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~-----------~~~~~~~~r~~f-~~-~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~ 153 (364)
...++++.|||.-. ...|+ .++.+-.. ..+ -. .+.+.+++.+.|.+.|||....+ .++..+..
T Consensus 183 ~~~~~~iG~GGgHY--apr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~ 258 (451)
T PRK14866 183 HTDRPLVGFGGGHY--APRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEA 258 (451)
T ss_pred cCCCEEEEeCCCCc--chhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHH
Confidence 46799999999665 43333 33322110 000 01 34444555789999999987655 77777777
Q ss_pred HHHHHH
Q 035910 154 LFKEWR 159 (364)
Q Consensus 154 ~l~~lr 159 (364)
+++++.
T Consensus 259 ~l~~lg 264 (451)
T PRK14866 259 LLEELG 264 (451)
T ss_pred HHHHCC
Confidence 666553
No 115
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=48.09 E-value=2.1e+02 Score=26.85 Aligned_cols=85 Identities=11% Similarity=0.150 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCC--CCCCccccccccC--------Chhh-----HHHHHHHHHHHHHhCCCcEEEE
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGG--NNPNYSTYSSMAG--------NPSS-----RKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~--~~~~~~~~~~~~~--------~~~~-----r~~f~~~i~~~l~~~~~DGidi 137 (364)
...+++.+++|++ |+|+.+-...+ .. ..+..-.. .+.. .+....++.+++.+|..|.+=+
T Consensus 138 Div~El~~A~rk~--Glk~G~Y~S~~dw~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWf 212 (346)
T PF01120_consen 138 DIVGELADACRKY--GLKFGLYYSPWDWHH---PDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWF 212 (346)
T ss_dssp -HHHHHHHHHHHT--T-EEEEEEESSSCCC---TTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEE
T ss_pred CHHHHHHHHHHHc--CCeEEEEecchHhcC---cccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEe
Confidence 3457777788877 78888666543 32 11111110 1111 2256689999999999999999
Q ss_pred eccCCCCCcchhhHHHHHHHHHHHHh
Q 035910 138 SWSWANTSWDKYNIGILFKEWRATID 163 (364)
Q Consensus 138 Dwe~~~~~~d~~~~~~~l~~lr~~l~ 163 (364)
|..++.. .+...+..+...+|+.-+
T Consensus 213 Dg~~~~~-~~~~~~~~~~~~i~~~qp 237 (346)
T PF01120_consen 213 DGGWPDP-DEDWDSAELYNWIRKLQP 237 (346)
T ss_dssp ESTTSCC-CTHHHHHHHHHHHHHHST
T ss_pred cCCCCcc-ccccCHHHHHHHHHHhCC
Confidence 9877653 444445555555555443
No 116
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=47.81 E-value=45 Score=30.10 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
....++++++.|||||+|....+........-..-++++++.+.+.
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 4567889999999999997654432111111125677777777765
No 117
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.12 E-value=66 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=24.8
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
.||+.|+=|.+.+.++ .+.|+||+=+|+..|
T Consensus 135 tnp~a~~w~~~~~~~~-~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKKL-IDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHHh-hhCCccEEEecCCCc
Confidence 4888888887776665 778999999999654
No 118
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=47.11 E-value=92 Score=32.90 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEecc
Q 035910 115 SRKYFIDSSIKIARLCGFQGLDLSWS 140 (364)
Q Consensus 115 ~r~~f~~~i~~~l~~~~~DGidiDwe 140 (364)
..+.|++.... +++-|||||+|.--
T Consensus 549 ~i~~f~~aA~~-a~~aGfDgveih~a 573 (765)
T PRK08255 549 VRDDFVAAARR-AAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEecc
Confidence 44566665544 45579999999865
No 119
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=46.94 E-value=63 Score=30.72 Aligned_cols=128 Identities=9% Similarity=0.161 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCC---CC-Cc-----------------cccccccCCh---hhHHHHHHHHHHHH
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGN---NP-NY-----------------STYSSMAGNP---SSRKYFIDSSIKIA 127 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~---~~-~~-----------------~~~~~~~~~~---~~r~~f~~~i~~~l 127 (364)
...++++.+.+|++ |.|+++-|.-.+ .. .. ....+.++.+ +.++.|++....-.
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~ 159 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAK 159 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 56678888888877 678887773222 00 00 0111222221 23445555544444
Q ss_pred HhCCCcEEEEeccC---------CCC----------CcchhhH-HHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCccc
Q 035910 128 RLCGFQGLDLSWSW---------ANT----------SWDKYNI-GILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLS 187 (364)
Q Consensus 128 ~~~~~DGidiDwe~---------~~~----------~~d~~~~-~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~ 187 (364)
+-|||||+|.=-+ |.+ -+++..| .+.++.+|++.... +.|.+.+++....
T Consensus 160 -~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~---------~~vg~Rls~~d~~ 229 (363)
T COG1902 160 -EAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGAD---------FPVGVRLSPDDFF 229 (363)
T ss_pred -HcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCC---------ceEEEEECccccC
Confidence 4799999997542 111 1222222 35666666666554 4566666654331
Q ss_pred ccCCCC-------hhHHhcc--cceEeeecccc
Q 035910 188 TEAAYP-------VDSIRQY--LNWVRVMTAGY 211 (364)
Q Consensus 188 ~~~~~~-------~~~l~~~--vD~v~vm~Yd~ 211 (364)
...+++ .+.|.+. +|++++..-+.
T Consensus 230 ~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 230 DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccEEEeecccc
Confidence 211332 2334443 69998876443
No 120
>PRK09505 malS alpha-amylase; Reviewed
Probab=46.85 E-value=45 Score=34.62 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=25.6
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEec
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSW 139 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDw 139 (364)
.|++-|+.+++-+..|++++|+||+-||=
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDa 462 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDT 462 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 45688889999999999999999999994
No 121
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=46.66 E-value=2.1e+02 Score=25.35 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhc-c
Q 035910 122 SSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQ-Y 200 (364)
Q Consensus 122 ~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~-~ 200 (364)
..++.+.+.|.||+-+--..+ +-+.++.+.+++.+. ...+.+.+.+... .++.+.+ .
T Consensus 95 ~fi~~~~~aG~~giiipDl~~----------ee~~~~~~~~~~~g~--------~~i~~i~P~T~~~----~i~~i~~~~ 152 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDLPP----------EEAEEFREAAKEYGL--------DLIFLVAPTTPDE----RIKKIAELA 152 (242)
T ss_pred HHHHHHHHCCCcEEEECCCCH----------HHHHHHHHHHHHcCC--------cEEEEeCCCCCHH----HHHHHHhhC
Confidence 345556677999999932211 134556666666653 3333333322221 2345556 7
Q ss_pred cceEeeecc
Q 035910 201 LNWVRVMTA 209 (364)
Q Consensus 201 vD~v~vm~Y 209 (364)
.||+.+|+.
T Consensus 153 ~~~vy~~s~ 161 (242)
T cd04724 153 SGFIYYVSR 161 (242)
T ss_pred CCCEEEEeC
Confidence 899999986
No 122
>PRK09936 hypothetical protein; Provisional
Probab=46.57 E-value=2.4e+02 Score=25.92 Aligned_cols=119 Identities=8% Similarity=0.125 Sum_probs=66.3
Q ss_pred CCCcEEEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHH----
Q 035910 46 ALFTHLMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFID---- 121 (364)
Q Consensus 46 ~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~---- 121 (364)
-.|.++|.-|-...+. ++... +.-+.+....++++ |+||.+.+-- +.+.|..+..|++..+.|.+
T Consensus 50 ~G~~tLivQWt~yG~~----~fg~~-~g~La~~l~~A~~~--Gl~v~vGL~~----Dp~y~q~~~~d~~~~~~yl~~~l~ 118 (296)
T PRK09936 50 QGFDTLVVQWTRYGDA----DFGGQ-RGWLAKRLAAAQQA--GLKLVVGLYA----DPEFFMHQKQDGAALESYLNRQLG 118 (296)
T ss_pred cCCcEEEEEeeeccCC----Ccccc-hHHHHHHHHHHHHc--CCEEEEcccC----ChHHHHHHhcCchhHHHHHHHHHH
Confidence 4599999999877332 22222 23333344445554 8998887754 46778777667666555443
Q ss_pred ----HHHHHHHhCCC--cEEEEeccCCC----CCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEe
Q 035910 122 ----SSIKIARLCGF--QGLDLSWSWAN----TSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMV 181 (364)
Q Consensus 122 ----~i~~~l~~~~~--DGidiDwe~~~----~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (364)
....+-...++ +|--|=-|--. ++..+..+...|+.+...++..++ ++.||+..
T Consensus 119 ~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~k------Pv~ISay~ 182 (296)
T PRK09936 119 ASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAK------PVHISAFF 182 (296)
T ss_pred HHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCC------CeEEEeec
Confidence 33344455555 88766555221 123344555556666566553222 35565544
No 123
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=45.91 E-value=1.3e+02 Score=28.84 Aligned_cols=112 Identities=11% Similarity=0.118 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCccc--------------cccccCChhhHHHHHHHHHHHHHhCCCcEEEEecc
Q 035910 75 FSNFTDTVKIKNPAITTLLSIGGGNNPNYST--------------YSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWS 140 (364)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsigg~~~~~~~~--------------~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe 140 (364)
-..+++.+|++.|+++ +..+||... .... |...+..=-.-.+..+.+++.+++..-|-+.+ ..
T Consensus 14 ga~Li~~Lk~~~p~~~-~~GvGG~~M-~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl-ID 90 (373)
T PF02684_consen 14 GARLIRALKARDPDIE-FYGVGGPRM-QAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVIL-ID 90 (373)
T ss_pred HHHHHHHHHhhCCCcE-EEEEechHH-HhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-eC
Confidence 3567889999999887 678888544 1112 22223222234456788999999999997765 22
Q ss_pred CCCCCcchhhH-HHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeee
Q 035910 141 WANTSWDKYNI-GILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVM 207 (364)
Q Consensus 141 ~~~~~~d~~~~-~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm 207 (364)
+|+ | ..+.+.+|+.... ..+--.+++.-+.|. ..-.+.|.+++|.+.+.
T Consensus 91 ~pg-------FNlrlak~lk~~~~~----------~~viyYI~PqvWAWr-~~R~~~i~~~~D~ll~i 140 (373)
T PF02684_consen 91 YPG-------FNLRLAKKLKKRGIP----------IKVIYYISPQVWAWR-PGRAKKIKKYVDHLLVI 140 (373)
T ss_pred CCC-------ccHHHHHHHHHhCCC----------ceEEEEECCceeeeC-ccHHHHHHHHHhheeEC
Confidence 332 2 2455555554322 113333444444443 35678999999997554
No 124
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.49 E-value=1.4e+02 Score=27.40 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=49.7
Q ss_pred EecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCC--CCCcc-----------------ccccccCChhhHHHHHHHHHH
Q 035910 65 LSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGN--NPNYS-----------------TYSSMAGNPSSRKYFIDSSIK 125 (364)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~--~~~~~-----------------~~~~~~~~~~~r~~f~~~i~~ 125 (364)
.+.....-+....+++.||++ |+|+++.+--.. .+... ...--..+|+.++-|-+.+.+
T Consensus 66 ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 66 YSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred eEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHH
Confidence 344333334456777888876 799998773210 00000 011134578889999999999
Q ss_pred HHHhCCCcEEEEeccCC
Q 035910 126 IARLCGFQGLDLSWSWA 142 (364)
Q Consensus 126 ~l~~~~~DGidiDwe~~ 142 (364)
.+...|+||+=+|+..+
T Consensus 144 ~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 144 PLEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHHhcCCcEEEecCCCC
Confidence 99999999999998544
No 125
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=45.41 E-value=95 Score=31.82 Aligned_cols=94 Identities=12% Similarity=0.179 Sum_probs=60.4
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEc-CCCCCC----------------------ccccccccC---ChhhHHHHHHHHH
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIG-GGNNPN----------------------YSTYSSMAG---NPSSRKYFIDSSI 124 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsig-g~~~~~----------------------~~~~~~~~~---~~~~r~~f~~~i~ 124 (364)
.++.++.|+..++++ ++-|+|=+- +...++ ...|-..+- .++-|.-|+.++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 678899999988887 788887651 111100 112222222 4577888999999
Q ss_pred HHHHhCCCcEEEEeccC---------------CCCCcch--hhHHHHHHHHHHHHhHhh
Q 035910 125 KIARLCGFQGLDLSWSW---------------ANTSWDK--YNIGILFKEWRATIDLEA 166 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe~---------------~~~~~d~--~~~~~~l~~lr~~l~~~~ 166 (364)
-|+++|.+||+-+|=-. |.....+ -.-+.|++.+.+.++...
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~ 348 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEE 348 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccC
Confidence 99999999999877310 1111122 334578888888887653
No 126
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=45.33 E-value=1.8e+02 Score=27.12 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=34.9
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-Ccc-----hhhHHHHHHHHHHH
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-SWD-----KYNIGILFKEWRAT 161 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-~~d-----~~~~~~~l~~lr~~ 161 (364)
+..++++|.|.. + +.| ..+++.+++.++|+|+|+.-.+.. +.. .+.+.++++.+|+.
T Consensus 99 ~~pvi~si~g~~-------------~---~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~ 161 (325)
T cd04739 99 SIPVIASLNGVS-------------A---GGW-VDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA 161 (325)
T ss_pred CCeEEEEeCCCC-------------H---HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc
Confidence 578899997722 1 233 344555667789999999976432 111 12345666666655
Q ss_pred H
Q 035910 162 I 162 (364)
Q Consensus 162 l 162 (364)
.
T Consensus 162 ~ 162 (325)
T cd04739 162 V 162 (325)
T ss_pred c
Confidence 4
No 127
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=43.88 E-value=53 Score=29.12 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
+...++.+++.|||||+|.+.+ . .-++++++.+++.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--~--------~~~~~l~~~l~~~g 52 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--D--------WDAEALKARLAAAG 52 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--c--------CCHHHHHHHHHHcC
Confidence 5677888899999999997532 1 13677788887776
No 128
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=43.83 E-value=1.1e+02 Score=28.79 Aligned_cols=91 Identities=8% Similarity=0.103 Sum_probs=47.6
Q ss_pred CCcEEEEEeEEeeCCCc----EEec-CCcchhHHHHHHHHHHhhCCCcEEEEEE--cCCCCCC-------cc-------c
Q 035910 47 LFTHLMCGFADVNSTSY----ELSL-SPSNEKQFSNFTDTVKIKNPAITTLLSI--GGGNNPN-------YS-------T 105 (364)
Q Consensus 47 ~~Thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~k~~~~~~kvllsi--gg~~~~~-------~~-------~ 105 (364)
.+.-|+.....+.+.+. .+.+ .++..+.+++++..+|++ |.|+++-| +|..... +. .
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~ 127 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSK 127 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCC
Confidence 35555665555655431 1111 233445677777777775 78888777 3322100 00 0
Q ss_pred cccccCC---hhhHHHHHHHHHHHHHhCCCcEEEEecc
Q 035910 106 YSSMAGN---PSSRKYFIDSSIKIARLCGFQGLDLSWS 140 (364)
Q Consensus 106 ~~~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiDwe 140 (364)
....++. ++..+.|++.. ..+++-|||||+|.--
T Consensus 128 ~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 128 TPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 0111211 13455666644 4556679999999865
No 129
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=43.00 E-value=1.5e+02 Score=28.42 Aligned_cols=83 Identities=11% Similarity=0.061 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcC--CCCCCcccccc-------ccCChhhHHHH---HHHHHHHHHhCCCcEEEEec
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGG--GNNPNYSTYSS-------MAGNPSSRKYF---IDSSIKIARLCGFQGLDLSW 139 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg--~~~~~~~~~~~-------~~~~~~~r~~f---~~~i~~~l~~~~~DGidiDw 139 (364)
....+.+.+++|++ |+|+-+-... |.. ..+.. -...+...+-+ ..++.+++.+|+-|.+=+|+
T Consensus 127 rDiv~el~~A~rk~--Glk~G~Y~S~~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~ 201 (384)
T smart00812 127 RDLVGELADAVRKR--GLKFGLYHSLFDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDG 201 (384)
T ss_pred cchHHHHHHHHHHc--CCeEEEEcCHHHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 34567777778877 7988876654 332 11111 01112223333 69999999999999999998
Q ss_pred cCCCCCcchhhHHHHHHHHHH
Q 035910 140 SWANTSWDKYNIGILFKEWRA 160 (364)
Q Consensus 140 e~~~~~~d~~~~~~~l~~lr~ 160 (364)
.++.. .+.....+|++.+|+
T Consensus 202 ~~~~~-~~~~~~~~l~~~~~~ 221 (384)
T smart00812 202 GWEAP-DDYWRSKEFLAWLYN 221 (384)
T ss_pred CCCCc-cchhcHHHHHHHHHH
Confidence 77653 222234445555554
No 130
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=42.26 E-value=1.1e+02 Score=27.83 Aligned_cols=50 Identities=14% Similarity=-0.037 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccCCC----------CCcchhhHHHHHHHHHHHHhHhhh
Q 035910 118 YFIDSSIKIARLCGFQGLDLSWSWAN----------TSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 118 ~f~~~i~~~l~~~~~DGidiDwe~~~----------~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
..+.+-.+-|.+.|||||-||+=-+- ..........|+.+|++..+..+.
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~ 185 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANP 185 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 44566667777789999999973221 123445678899999999988765
No 131
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=41.99 E-value=53 Score=30.41 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----------Ccchhh
Q 035910 82 VKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----------SWDKYN 150 (364)
Q Consensus 82 ~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----------~~d~~~ 150 (364)
+.......++.+-|+|.. + ......++.+...++|||||+.-=|.. -.+.+.
T Consensus 47 ~~~~~~~~p~~~Ql~g~~-------------~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~ 109 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGND-------------P----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDL 109 (309)
T ss_dssp S-GCC-T-TEEEEEE-S--------------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHH
T ss_pred ccccccccceeEEEeecc-------------H----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHH
Confidence 333333457778888732 3 334445567777999999999987752 246677
Q ss_pred HHHHHHHHHHHHh
Q 035910 151 IGILFKEWRATID 163 (364)
Q Consensus 151 ~~~~l~~lr~~l~ 163 (364)
..++|+.+++.++
T Consensus 110 ~~~iv~~~~~~~~ 122 (309)
T PF01207_consen 110 LAEIVKAVRKAVP 122 (309)
T ss_dssp HHHHHHHHHHH-S
T ss_pred hhHHHHhhhcccc
Confidence 8888888888876
No 132
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=41.16 E-value=1.8e+02 Score=23.68 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEE-EEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEe
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLL-SIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLS 138 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvll-sigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD 138 (364)
....+..+++.++++.|+.+|++ ++--... .. . ........++++.+.+.++.+++++.=||+.
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~--~~-~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE--ED-E-IKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc--cc-c-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 35667888888888889998774 3322111 11 1 1112345678888888999999887666664
No 133
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.74 E-value=1.2e+02 Score=26.23 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=45.7
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecC
Q 035910 105 TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYS 184 (364)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~ 184 (364)
..+-|..+|. ++++. +.+.|.|-|-+.+|-. .....+++.+|+. + ....+++.+.
T Consensus 61 DvHLMv~~P~---~~i~~----~~~~g~~~i~~H~E~~------~~~~~~i~~ik~~----g--------~k~GialnP~ 115 (201)
T PF00834_consen 61 DVHLMVENPE---RYIEE----FAEAGADYITFHAEAT------EDPKETIKYIKEA----G--------IKAGIALNPE 115 (201)
T ss_dssp EEEEESSSGG---GHHHH----HHHHT-SEEEEEGGGT------TTHHHHHHHHHHT----T--------SEEEEEE-TT
T ss_pred EEEeeeccHH---HHHHH----HHhcCCCEEEEcccch------hCHHHHHHHHHHh----C--------CCEEEEEECC
Confidence 3456677774 34444 4556999999999932 2344566666653 3 3456666554
Q ss_pred cccccCCCChhHHhcccceEeeeccc
Q 035910 185 PLSTEAAYPVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 185 ~~~~~~~~~~~~l~~~vD~v~vm~Yd 210 (364)
+.... +..+.+.+|+|.+|+-+
T Consensus 116 T~~~~----~~~~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 116 TPVEE----LEPYLDQVDMVLVMSVE 137 (201)
T ss_dssp S-GGG----GTTTGCCSSEEEEESS-
T ss_pred CCchH----HHHHhhhcCEEEEEEec
Confidence 43322 34566789999999976
No 134
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=40.03 E-value=66 Score=25.81 Aligned_cols=56 Identities=7% Similarity=0.038 Sum_probs=44.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEe-ccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLS-WSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiD-we~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
-+|+.-..+.+.+++++++.+-.-|-|| .||..-..+-.....||..||+..-..+
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~ 111 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNN 111 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccC
Confidence 3688888999999999999554567778 6877655667788899999998875554
No 135
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=39.93 E-value=1.2e+02 Score=28.94 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCCh--------------hhHHHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 76 SNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNP--------------SSRKYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~--------------~~r~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
..+++.+|++.|++. ++.|||... ....+..+..-. -.-.+-.+.+++.+....-|.+-+ ..+
T Consensus 18 a~LikaLk~~~~~~e-fvGvgG~~m-~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~-IDs 94 (381)
T COG0763 18 AGLIKALKARYPDVE-FVGVGGEKM-EAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLIL-IDS 94 (381)
T ss_pred HHHHHHHHhhCCCeE-EEEeccHHH-HhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-eCC
Confidence 467889999999887 678998554 222333222111 122234566677777778886644 122
Q ss_pred CCCCcchhhH-HHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeee
Q 035910 142 ANTSWDKYNI-GILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVM 207 (364)
Q Consensus 142 ~~~~~d~~~~-~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm 207 (364)
| .| ..+.+.||+..... .+--.|.++-+.|.. .-...+.+++|++...
T Consensus 95 P-------dFnl~vak~lrk~~p~i----------~iihYV~PsVWAWr~-~Ra~~i~~~~D~lLai 143 (381)
T COG0763 95 P-------DFNLRVAKKLRKAGPKI----------KIIHYVSPSVWAWRP-KRAVKIAKYVDHLLAI 143 (381)
T ss_pred C-------CCchHHHHHHHHhCCCC----------CeEEEECcceeeech-hhHHHHHHHhhHeeee
Confidence 2 22 35777787777553 233334444444432 2357899999998654
No 136
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=39.81 E-value=3e+02 Score=25.80 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----Ccchh
Q 035910 75 FSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----SWDKY 149 (364)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----~~d~~ 149 (364)
...+++.++....++.+.++||+... ...+..-+.|++.+-.+-. ..|.++|+.--|.. .++.+
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~~---------~~~~~~~~dy~~~~~~~~~--~ad~iElNlScPn~~~~~~~~~~~ 189 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNKD---------TPSEDAKEDYAACLRKLGP--LADYLVVNVSSPNTPGLRDLQYKA 189 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCCC---------CCcccCHHHHHHHHHHHhh--hCCEEEEEccCCCCCCcccccCHH
Confidence 34445555555557889999987421 1112234566665555433 38999999976653 24567
Q ss_pred hHHHHHHHHHHHHh
Q 035910 150 NIGILFKEWRATID 163 (364)
Q Consensus 150 ~~~~~l~~lr~~l~ 163 (364)
.+.++++.+|+..+
T Consensus 190 ~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 190 ELRDLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888876
No 137
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.76 E-value=2.7e+02 Score=25.45 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=36.6
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhC--CCcEEEEeccCCCCC-------cchhhHHHHHHHH
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLC--GFQGLDLSWSWANTS-------WDKYNIGILFKEW 158 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiDwe~~~~~-------~d~~~~~~~l~~l 158 (364)
+..++++|.|.. + +.+ ..+++.+++. ++|+|||++--|... .+.+...++++++
T Consensus 90 ~~pl~~qi~g~~-------------~---~~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~v 152 (300)
T TIGR01037 90 PTPLIASVYGSS-------------V---EEF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAV 152 (300)
T ss_pred CCcEEEEeecCC-------------H---HHH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHH
Confidence 467899998732 1 233 3444555543 499999999877532 3445566777777
Q ss_pred HHHH
Q 035910 159 RATI 162 (364)
Q Consensus 159 r~~l 162 (364)
|+..
T Consensus 153 r~~~ 156 (300)
T TIGR01037 153 KDKT 156 (300)
T ss_pred HHhc
Confidence 7665
No 138
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=39.47 E-value=2.8e+02 Score=24.82 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=37.7
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccc
Q 035910 123 SIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLN 202 (364)
Q Consensus 123 i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD 202 (364)
-++.+++.|.||+-|--+ |. .-..++.+.+++.+. .+...+.+.+... .+..+.+.+|
T Consensus 107 f~~~~~~aGvdgviipDl-p~---------ee~~~~~~~~~~~gl--------~~i~lv~P~T~~e----ri~~i~~~~~ 164 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVADL-PL---------EESGDLVEAAKKHGV--------KPIFLVAPNADDE----RLKQIAEKSQ 164 (256)
T ss_pred HHHHHHHcCCCEEEECCC-Ch---------HHHHHHHHHHHHCCC--------cEEEEECCCCCHH----HHHHHHHhCC
Confidence 345567789999998654 21 124455566666553 3333333322221 2467777887
Q ss_pred -eEeeecc
Q 035910 203 -WVRVMTA 209 (364)
Q Consensus 203 -~v~vm~Y 209 (364)
|+.+|+.
T Consensus 165 gfiy~vs~ 172 (256)
T TIGR00262 165 GFVYLVSR 172 (256)
T ss_pred CCEEEEEC
Confidence 9999985
No 139
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=38.89 E-value=59 Score=21.63 Aligned_cols=42 Identities=12% Similarity=-0.034 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcEE-EEeccCCCCCcchhhHHHHHHHHHHHHh
Q 035910 121 DSSIKIARLCGFQGL-DLSWSWANTSWDKYNIGILFKEWRATID 163 (364)
Q Consensus 121 ~~i~~~l~~~~~DGi-diDwe~~~~~~d~~~~~~~l~~lr~~l~ 163 (364)
+.+++.|+..|+||. .|.||-+.- +....+..=++-||..+-
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~l~ 45 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKLLI 45 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHhcC
Confidence 457888999999995 678886553 334455555555555443
No 140
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=38.86 E-value=1.8e+02 Score=30.52 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHhhCCCcE---EEEEEcC-CCCCCcc--c--------------c---------cc------ccCChhhH
Q 035910 72 EKQFSNFTDTVKIKNPAIT---TLLSIGG-GNNPNYS--T--------------Y---------SS------MAGNPSSR 116 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~k---vllsigg-~~~~~~~--~--------------~---------~~------~~~~~~~r 116 (364)
...++.+++.+|+++|++| |+.++-| |+.-.++ . . .. -+-+|+.-
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 4578889999999998876 4455533 4431111 0 0 00 13467788
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 117 KYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
..|-+..-++|...|+|||-+|-+..
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~ 392 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAI 392 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhh
Confidence 89999999999999999999997643
No 141
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=38.71 E-value=2.4e+02 Score=26.84 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 035910 117 KYFIDSSIKIARLCGFQGLDLSWSWANT 144 (364)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiDwe~~~~ 144 (364)
+.-++++++..-++|+.-||=-|-|-+.
T Consensus 33 ~~~~~~~i~~aie~GiNyidTA~~Yh~g 60 (391)
T COG1453 33 EENANETIDYAIEHGINYIDTAWPYHGG 60 (391)
T ss_pred HHHHHHHHHHHHHcCCceEeecccccCC
Confidence 4557778888888999999999988654
No 142
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.52 E-value=3e+02 Score=24.83 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=52.6
Q ss_pred HHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccc-
Q 035910 124 IKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLN- 202 (364)
Q Consensus 124 ~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD- 202 (364)
++.+++.|.||+-|--+ |. .-..++.+.+++.+. .+...+++.+... .++.+.+.++
T Consensus 112 ~~~~~~aGvdgviipDL-P~---------ee~~~~~~~~~~~gi--------~~I~lv~PtT~~e----ri~~i~~~a~g 169 (263)
T CHL00200 112 IKKISQAGVKGLIIPDL-PY---------EESDYLISVCNLYNI--------ELILLIAPTSSKS----RIQKIARAAPG 169 (263)
T ss_pred HHHHHHcCCeEEEecCC-CH---------HHHHHHHHHHHHcCC--------CEEEEECCCCCHH----HHHHHHHhCCC
Confidence 44457789999999544 21 124456666666654 2333333322211 3578888888
Q ss_pred eEeeeccccCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHcCCCCCceEEEe
Q 035910 203 WVRVMTAGYSKPMRTNFTSAQAALYDPNSISNTEYRITQWIEDGLSADKLVVGL 256 (364)
Q Consensus 203 ~v~vm~Yd~~~~~~~~~~~~~apl~~~~~~~~~~~~v~~~~~~g~p~~KlvlGl 256 (364)
||.+|+. .+.||....+.. .+.+.++...+. ..-.|++|.
T Consensus 170 FIY~vS~-------~GvTG~~~~~~~-----~~~~~i~~ir~~--t~~Pi~vGF 209 (263)
T CHL00200 170 CIYLVST-------TGVTGLKTELDK-----KLKKLIETIKKM--TNKPIILGF 209 (263)
T ss_pred cEEEEcC-------CCCCCCCccccH-----HHHHHHHHHHHh--cCCCEEEEC
Confidence 9999883 244555433321 455555554442 233566554
No 143
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=38.45 E-value=2.4e+02 Score=24.97 Aligned_cols=88 Identities=15% Similarity=0.208 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcC---CCCCCccccccccCChhhHHHHHHHHHHHHHhC----CCcEEEEeccCCCCC
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGG---GNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLC----GFQGLDLSWSWANTS 145 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg---~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~----~~DGidiDwe~~~~~ 145 (364)
..+.++++.++++ |++|++.+-. |.. ....+ .......+.|.+-+..+.++| ..-|++| |-.|...
T Consensus 62 ~~ld~~v~~a~~~--gi~vild~h~~~~w~~-~~~~~---~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el-~NEP~~~ 134 (281)
T PF00150_consen 62 ARLDRIVDAAQAY--GIYVILDLHNAPGWAN-GGDGY---GNNDTAQAWFKSFWRALAKRYKDNPPVVGWEL-WNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEEEESTTCSS-STSTT---TTHHHHHHHHHHHHHHHHHHHTTTTTTEEEES-SSSGCST
T ss_pred HHHHHHHHHHHhC--CCeEEEEeccCccccc-ccccc---ccchhhHHHHHhhhhhhccccCCCCcEEEEEe-cCCcccc
Confidence 3455666666655 8999998854 422 11111 112223333433344444554 2334444 2223321
Q ss_pred c--------chhhHHHHHHHHHHHHhHhhh
Q 035910 146 W--------DKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 146 ~--------d~~~~~~~l~~lr~~l~~~~~ 167 (364)
. ....+..+++++.+++++.++
T Consensus 135 ~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~ 164 (281)
T PF00150_consen 135 NDDANWNAQNPADWQDWYQRAIDAIRAADP 164 (281)
T ss_dssp TSTTTTSHHHTHHHHHHHHHHHHHHHHTTS
T ss_pred CCccccccccchhhhhHHHHHHHHHHhcCC
Confidence 1 226678888888888888765
No 144
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=38.11 E-value=74 Score=28.70 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcch-hhHHHHHHHHHHHHhHhhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDK-YNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~-~~~~~~l~~lr~~l~~~~~ 167 (364)
...+++.+++.|||||+|....+...-+. .....-++++++.+.+.+.
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 66 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGV 66 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCC
Confidence 34566888999999999965432110011 1125678889999988763
No 145
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=37.83 E-value=1.4e+02 Score=27.03 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=47.0
Q ss_pred HHHHHhhCCC-cEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 79 TDTVKIKNPA-ITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 79 ~~~~k~~~~~-~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
++.++...+. ..+++.=-||-. +...+.....++++++.|++++..-|+..|+|=+.|
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS-~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPS-DGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCC-CCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 3455655555 677788889887 677888888899999999999999999999887665
No 146
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=37.75 E-value=1.4e+02 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=23.0
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
..+|+.|+-+.+.+. -+.+.|+||+-+|+-.+
T Consensus 129 ftnp~a~~w~~~~~~-~~~~~Gid~~~~D~~e~ 160 (308)
T cd06593 129 FTNPDACKWYKDKLK-PLLDMGVDCFKTDFGER 160 (308)
T ss_pred CCCHHHHHHHHHHHH-HHHHhCCcEEecCCCCC
Confidence 457888876655554 55568999999998643
No 147
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.83 E-value=2e+02 Score=23.66 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
...+..+++.+++++|+.+|++.----.. ..... ...+....+.+.+.+.++.+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~--~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY--YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc--ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 35677888888888888888765321111 11111 12344455677778888888888765554
No 148
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=36.58 E-value=2.6e+02 Score=31.44 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=33.8
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
.++.-|+-.++++.-|++ +++||.-+|--....... ..|+++++..+++.
T Consensus 316 ~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 316 ERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred CCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 357778888899999999 999999999643221111 23556666666554
No 149
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=36.50 E-value=1.5e+02 Score=27.53 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCcccc-c----------------------------cccCChhhHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTY-S----------------------------SMAGNPSSRKYFIDSS 123 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~-~----------------------------~~~~~~~~r~~f~~~i 123 (364)
++.+.+++.||++ |+|+++.|--.-..++..+ . -=..||+.|+=+.+.+
T Consensus 71 Pdp~~mi~~Lh~~--G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 148 (317)
T cd06594 71 PGLDELIEELKAR--GIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVI 148 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHH
Confidence 3456778888887 7898887733211011111 1 1134789999999999
Q ss_pred HHHHHhCCCcEEEEeccC
Q 035910 124 IKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 124 ~~~l~~~~~DGidiDwe~ 141 (364)
.+++.++|+||+=+|+..
T Consensus 149 ~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 149 KEMLLDLGLSGWMADFGE 166 (317)
T ss_pred HHHhhhcCCcEEEecCCC
Confidence 999889999999999854
No 150
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=36.47 E-value=66 Score=31.80 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=31.2
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhH
Q 035910 112 NPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDL 164 (364)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~ 164 (364)
+++-|+.+++.+..|++++|+||+-||--.-. + ..|++++++++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v---~----~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHI---D----AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC---C----HHHHHHHHHHHHH
Confidence 67778888887777777799999999953221 1 2355555555543
No 151
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=35.23 E-value=1.9e+02 Score=27.79 Aligned_cols=64 Identities=6% Similarity=0.000 Sum_probs=36.7
Q ss_pred CCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEecc--CCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 97 GGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWS--WANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe--~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
||.. .+.|-....... . ....++-+.+.|||||++... +|.. .+...-..-++++++.+++.+.
T Consensus 17 ~~~~--~~~~g~~~~~~~---~-~~e~i~~la~~GfdgVE~~~~dl~P~~-~~~~e~~~~~~~lk~~L~~~GL 82 (382)
T TIGR02631 17 GWVG--RDPFGDATRTAL---D-PVEAVHKLAELGAYGVTFHDDDLIPFG-APPQERDQIVRRFKKALDETGL 82 (382)
T ss_pred CCCC--CCCCCCCCCCCc---C-HHHHHHHHHHhCCCEEEecccccCCCC-CChhHHHHHHHHHHHHHHHhCC
Confidence 4444 455654443222 1 224455578889999999632 2322 1111123457889999999874
No 152
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.23 E-value=1.5e+02 Score=25.61 Aligned_cols=91 Identities=8% Similarity=-0.062 Sum_probs=59.2
Q ss_pred hhhHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCC
Q 035910 113 PSSRKYFIDSSIKIARLCGFQGLDLSW-SWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAA 191 (364)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~~~DGidiDw-e~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 191 (364)
+.....+...+.+.+++.+.+-+.||= .......+...+..++..|...+++.+. -.+++...+... ..
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~------t~llt~~~~~~~-~~--- 166 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGV------TTLLTSEMPSGS-ED--- 166 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTE------EEEEEEEESSSS-SS---
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCC------EEEEEEccccCc-cc---
Confidence 345678999999999999999999982 2111235566788899999999987763 133333322211 11
Q ss_pred CChhHHhc-ccceEeeeccccCC
Q 035910 192 YPVDSIRQ-YLNWVRVMTAGYSK 213 (364)
Q Consensus 192 ~~~~~l~~-~vD~v~vm~Yd~~~ 213 (364)
.....+.. .+|-|..+.+...+
T Consensus 167 ~~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 167 DGTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSSTSHHHHHSSEEEEEEEEEET
T ss_pred ccccchhhhcccEEEEEEEEeeC
Confidence 11234455 78999999887554
No 153
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=34.17 E-value=1.2e+02 Score=27.21 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCC-ccccccccCChhhHHHHHHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGGNNPN-YSTYSSMAGNPSSRKYFIDSSIKIAR 128 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~~~~~-~~~~~~~~~~~~~r~~f~~~i~~~l~ 128 (364)
..+..+++.+++.||.+||+++|.--.-.. -..-.-+..|.-+...+...+-++++
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~ 208 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVR 208 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHh
Confidence 445677788999999999999997522100 00012344454444444444445554
No 154
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=34.09 E-value=55 Score=30.83 Aligned_cols=29 Identities=21% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEeccCC
Q 035910 327 DDVEAVRVKVSYAKEKKLRGYYMWEVSYD 355 (364)
Q Consensus 327 dd~~S~~~K~~~~~~~glgGv~vW~l~~D 355 (364)
.++++++..+++|+++|+-|+++|.-=.+
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~ 83 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFN 83 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecC
Confidence 48999999999999999999999976664
No 155
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=33.34 E-value=2.2e+02 Score=24.00 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=35.1
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCcccccc-ccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSS-MAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~-~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
-......|++.+++++|++.|++.---... ...+.. .-...+...+.++.+++-+++.|-..|.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~--~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYP--AGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----T--TTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCcc--ccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 456677889999999999998865422111 122222 12233445566777777777777665554
No 156
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=33.27 E-value=3.4e+02 Score=24.68 Aligned_cols=78 Identities=13% Similarity=0.162 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhH
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNI 151 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~ 151 (364)
...+.++++-.|++ +++|+|-.--... ... ...+++ .+...+.+++.|..||-|||-. .+.+..
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~---~~~------~~~~~~-~~~~f~~~~~~Gv~GvKidF~~----~d~Q~~ 135 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETG---GNV------ANLEKQ-LDEAFKLYAKWGVKGVKIDFMD----RDDQEM 135 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHT---TBH------HHHHCC-HHHHHHHHHHCTEEEEEEE--S----STSHHH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcc---hhh------HhHHHH-HHHHHHHHHHcCCCEEeeCcCC----CCCHHH
Confidence 45677888888888 6888877642111 001 112233 3888899999999999999863 344555
Q ss_pred HHHHHHHHHHHhHh
Q 035910 152 GILFKEWRATIDLE 165 (364)
Q Consensus 152 ~~~l~~lr~~l~~~ 165 (364)
+++.+++-+...+.
T Consensus 136 v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 136 VNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 66666655555444
No 157
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=32.95 E-value=81 Score=28.37 Aligned_cols=48 Identities=29% Similarity=0.416 Sum_probs=32.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
.++..|+.+++ ++++..++++||+-||--.-.. ..++++++.+++...
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~~~~~~~ 189 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRDEVKEEK 189 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhhhhhhhc
Confidence 46777887777 5555555669999999642211 277777777777653
No 158
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=32.68 E-value=98 Score=30.45 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=75.6
Q ss_pred HHhhCCCcEEEEEE-cCCCCCC----------ccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC-----CC
Q 035910 82 VKIKNPAITTLLSI-GGGNNPN----------YSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN-----TS 145 (364)
Q Consensus 82 ~k~~~~~~kvllsi-gg~~~~~----------~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~-----~~ 145 (364)
.++..-++|+++.+ -||..-+ ...=...+.|+..|..+-+=+-.+++.|+.|=--.-|+... .+
T Consensus 74 a~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p 153 (587)
T COG3934 74 APAGYLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAP 153 (587)
T ss_pred hhcccCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCcccccc
Confidence 34444589999764 2211100 11123556788888877777777888888886666776433 24
Q ss_pred cchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeeecc
Q 035910 146 WDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTA 209 (364)
Q Consensus 146 ~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Y 209 (364)
....+|..++++|...++.... +-.+++-=+..|......|+. -.+|||-...-|
T Consensus 154 ~s~N~f~~w~~emy~yiK~ldd------~hlvsvGD~~sp~~~~~pyN~---r~~vDya~~hLY 208 (587)
T COG3934 154 ISVNNFWDWSGEMYAYIKWLDD------GHLVSVGDPASPWPQYAPYNA---RFYVDYAANHLY 208 (587)
T ss_pred CChhHHHHHHHHHHHHhhccCC------CCeeecCCcCCcccccCCccc---ceeeccccchhh
Confidence 6678899999999999988764 457777666665444333443 346777655555
No 159
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.65 E-value=1.1e+02 Score=27.44 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcchhhH-HHHHHHHHHHHhHhhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDKYNI-GILFKEWRATIDLEAR 167 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~-~~~l~~lr~~l~~~~~ 167 (364)
....++.+++.|||||+|....+........+ ..-++++++.+++.+.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl 66 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGV 66 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCC
Confidence 45678889999999999975422110000111 2458899999998873
No 160
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=32.62 E-value=2.1e+02 Score=26.89 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeccCCCC----------CcchhhHHHHHHHHHHHHhHh
Q 035910 117 KYFIDSSIKIARLCGFQGLDLSWSWANT----------SWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 117 ~~f~~~i~~~l~~~~~DGidiDwe~~~~----------~~d~~~~~~~l~~lr~~l~~~ 165 (364)
..+++.++..+.+-|+.||.++|..-+. ..+.+.+..++..+++.+...
T Consensus 90 s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~~r 148 (345)
T COG0429 90 SPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFPPR 148 (345)
T ss_pred CHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCCCC
Confidence 3599999999999999999999985442 245577888888888877654
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=32.44 E-value=55 Score=31.82 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=40.6
Q ss_pred ccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 107 SSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 107 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
.+.+++...|++.+..|+++|.++|||| -|.....-.|.. ..|....|.|...+++.
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~PS~-k~F~~IFK~LY~~lDp~ 153 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQPSQ-KGFIIIFKWLYLRLDPG 153 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcCCcc-ccHHHHHHHHHhccCCC
Confidence 3567889999999999999999999998 332222112222 46778888888777753
No 162
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=32.29 E-value=1.2e+02 Score=25.77 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCc---EEEEeccCCCCCc-chhhHHHHHHHHHH
Q 035910 120 IDSSIKIARLCGFQ---GLDLSWSWANTSW-DKYNIGILFKEWRA 160 (364)
Q Consensus 120 ~~~i~~~l~~~~~D---GidiDwe~~~~~~-d~~~~~~~l~~lr~ 160 (364)
++..++.++.++++ -+-||+|...... -......|++++++
T Consensus 76 A~~f~~~~~~~~~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~ 120 (192)
T cd06522 76 ARYFANTAKSLGLSKNTVMVADMEDSSSSGNATANVNAFWQTMKA 120 (192)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeecCCCcchHHHHHHHHHHHHHH
Confidence 33444455666654 2578999754311 12233455555543
No 163
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.83 E-value=1.1e+02 Score=27.40 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcchhh-HHHHHHHHHHHHhHhhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDKYN-IGILFKEWRATIDLEAR 167 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~-~~~~l~~lr~~l~~~~~ 167 (364)
....++.+++.|||||+|....+........ -...++++++.+++.+.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl 71 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGF 71 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCC
Confidence 4566788889999999997543211000001 23568889999988763
No 164
>PRK12677 xylose isomerase; Provisional
Probab=31.63 E-value=1.5e+02 Score=28.50 Aligned_cols=47 Identities=9% Similarity=0.007 Sum_probs=31.7
Q ss_pred HHHHHHHHHhCCCcEEEEecc--CCCCCcchhhHHHHHHHHHHHHhHhhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWS--WANTSWDKYNIGILFKEWRATIDLEAR 167 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe--~~~~~~d~~~~~~~l~~lr~~l~~~~~ 167 (364)
....++.+.+.||+||.|..+ +|.. .+...-...++++++.+.+.+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~-~~~~~~~~~~~~lk~~l~~~GL 81 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFG-ATDAERDRIIKRFKKALDETGL 81 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCC-CChhhhHHHHHHHHHHHHHcCC
Confidence 457778899999999999754 2222 1111122468889999988863
No 165
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=31.52 E-value=2e+02 Score=23.87 Aligned_cols=102 Identities=8% Similarity=0.117 Sum_probs=68.5
Q ss_pred HHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---------cch
Q 035910 78 FTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS---------WDK 148 (364)
Q Consensus 78 ~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~---------~d~ 148 (364)
.++.| +.++++|+..|..... ...+ .++...||=|.+++-+.+.. ..+
T Consensus 45 nl~~L--~~~g~~V~~~VDat~l--~~~~-------------------~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr 101 (166)
T PF10354_consen 45 NLEEL--RELGVTVLHGVDATKL--HKHF-------------------RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNR 101 (166)
T ss_pred HHHHH--hhcCCccccCCCCCcc--cccc-------------------cccCCcCCEEEEeCCCCCCCccchhHHHHHHH
Confidence 33445 3458999988887543 2222 44566799999998877621 123
Q ss_pred hhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcccceEeeeccccCC
Q 035910 149 YNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQYLNWVRVMTAGYSK 213 (364)
Q Consensus 149 ~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd~~~ 213 (364)
.-+..|++..+..+...+. +.||..-..+ ...+++.+++....++.+...+|..
T Consensus 102 ~Ll~~Ff~Sa~~~L~~~G~-------IhVTl~~~~p----y~~W~i~~lA~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 102 ELLRGFFKSASQLLKPDGE-------IHVTLKDGQP----YDSWNIEELAAEAGLVLVRKVPFDP 155 (166)
T ss_pred HHHHHHHHHHHHhcCCCCE-------EEEEeCCCCC----CccccHHHHHHhcCCEEEEEecCCH
Confidence 4456777777777777664 7777764322 1346899999999999999888764
No 166
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=31.17 E-value=3.8e+02 Score=23.79 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=38.8
Q ss_pred HHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCcchhhHHHH
Q 035910 76 SNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCG-FQGLDLSWSWANTSWDKYNIGIL 154 (364)
Q Consensus 76 ~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiDwe~~~~~~d~~~~~~~ 154 (364)
....+.+|+..|++|+++. +.+. .....+++++.+-+.++.+... +|||-+-+-......+...+.++
T Consensus 106 ~~af~~ar~~~P~a~l~~N--dy~~---------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~ 174 (254)
T smart00633 106 EKAFRYAREADPDAKLFYN--DYNT---------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAA 174 (254)
T ss_pred HHHHHHHHHhCCCCEEEEe--ccCC---------cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHH
Confidence 3444578888999998884 3221 1112455555555555555443 89998854321111123344555
Q ss_pred HHHHH
Q 035910 155 FKEWR 159 (364)
Q Consensus 155 l~~lr 159 (364)
|+++.
T Consensus 175 l~~~~ 179 (254)
T smart00633 175 LDRFA 179 (254)
T ss_pred HHHHH
Confidence 55543
No 167
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=30.31 E-value=1.9e+02 Score=30.16 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
+.+-.|+-.+++|.=|+++++.||.-+|.-.
T Consensus 332 ~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~ 362 (697)
T COG1523 332 EHPMVRKLIVDSLRYWVEEYHVDGFRFDLAG 362 (697)
T ss_pred CChHHHHHHHHHHHHHHHHhCCCceeecchh
Confidence 4477889999999999999999999999864
No 168
>PRK13840 sucrose phosphorylase; Provisional
Probab=29.55 E-value=2.4e+02 Score=28.10 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=36.3
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEEEEec-----cCCCCC-cchhhHHHHHHHHHHHHhHhh
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGLDLSW-----SWANTS-WDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGidiDw-----e~~~~~-~d~~~~~~~l~~lr~~l~~~~ 166 (364)
..||+-|+.+.+-+.- ..+.|.||+-||= +.++.. .....--.|++++|+.++..+
T Consensus 166 ~~NP~V~~~i~~il~f-wl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~ 227 (495)
T PRK13840 166 VHSAAGWEYLMSILDR-FAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARG 227 (495)
T ss_pred CCCHHHHHHHHHHHHH-HHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcC
Confidence 4588888877775544 4566999999982 223221 112334568999998887654
No 169
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=29.45 E-value=1.6e+02 Score=30.73 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhhCCCcE---EEEEEcC-CCC--CCcccc------------------c-----------cccCChhhHH
Q 035910 73 KQFSNFTDTVKIKNPAIT---TLLSIGG-GNN--PNYSTY------------------S-----------SMAGNPSSRK 117 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~k---vllsigg-~~~--~~~~~~------------------~-----------~~~~~~~~r~ 117 (364)
..++.++..+|++++++| |+-+|-| |+. |+...+ . ..+-+|+...
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 477888999999887665 4455533 544 111110 0 1224677888
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccC
Q 035910 118 YFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 118 ~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
.|-+..-.+|.+.|+|||-+|=..
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~ 408 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIH 408 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhh
Confidence 999999999999999999999653
No 170
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=29.20 E-value=1e+02 Score=26.81 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=37.2
Q ss_pred EEEEEEcCCCCCCcccc-----------ccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHH
Q 035910 90 TTLLSIGGGNNPNYSTY-----------SSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEW 158 (364)
Q Consensus 90 kvllsigg~~~~~~~~~-----------~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~l 158 (364)
++++.+||.-. ...| ..++.+-....-=-+-+.+.+++.+.+-+-|||....+ .++..+..+++++
T Consensus 131 ~~~ig~GG~HY--apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY--APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT---HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc--chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 99999999665 3333 34443321111112334455566688999999997665 7777777777665
No 171
>PRK09989 hypothetical protein; Provisional
Probab=28.87 E-value=1.2e+02 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.293 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 120 IDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 120 ~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
....++.+++.|||||+|-..+. . -.+++++.+++.+
T Consensus 17 l~~~l~~~~~~Gfd~VEl~~~~~---~-------~~~~~~~~l~~~G 53 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYD---Y-------STLQIQKQLEQNH 53 (258)
T ss_pred HHHHHHHHHHcCCCEEEECCccc---C-------CHHHHHHHHHHcC
Confidence 34677889999999999954221 1 1578888888876
No 172
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=28.46 E-value=3.4e+02 Score=22.47 Aligned_cols=108 Identities=8% Similarity=0.037 Sum_probs=57.1
Q ss_pred CCcEEEEEeEEeeCCCcE-Eec-----CCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHH--
Q 035910 47 LFTHLMCGFADVNSTSYE-LSL-----SPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKY-- 118 (364)
Q Consensus 47 ~~Thi~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~-- 118 (364)
.|..||+.+........- ... .......+..+++.+.+. |+||+++++-. ...|.. .+.+....
T Consensus 33 GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~----~~~w~~--~~~~~~~~~~ 104 (166)
T PF14488_consen 33 GIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFD----PDYWDQ--GDLDWEAERN 104 (166)
T ss_pred CCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCC----chhhhc--cCHHHHHHHH
Confidence 588888877655442100 000 001223445555544444 89999999862 234442 44444433
Q ss_pred --HHHHHHHHHHhC-CCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 119 --FIDSSIKIARLC-GFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 119 --f~~~i~~~l~~~-~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
.++.+.+.-..| .|.|-=|-.|..... .+-..+++.|+..+++.
T Consensus 105 ~~v~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 105 KQVADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHh
Confidence 444444422222 399999988854331 12255556666666654
No 173
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=28.43 E-value=2.2e+02 Score=28.10 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEe-----ccCCCCCc-ch-hhHHHHHHHHHHHHhHhh
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLS-----WSWANTSW-DK-YNIGILFKEWRATIDLEA 166 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiD-----we~~~~~~-d~-~~~~~~l~~lr~~l~~~~ 166 (364)
.|+.-+ +++..++.+..+.|.||+-+| |+.++... .. ...-.+++++|+.+...+
T Consensus 163 ~np~v~-e~i~~il~fwl~~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~ 224 (470)
T TIGR03852 163 TSETTK-RFIRDNLENLAEHGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTG 224 (470)
T ss_pred CCHHHH-HHHHHHHHHHHHcCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCC
Confidence 455444 455556666667899999888 55555422 11 467789999999886654
No 174
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=28.06 E-value=1.2e+02 Score=28.01 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEeccCCC--CCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCC
Q 035910 116 RKYFIDSSIKIARLCGFQGLDLSWSWAN--TSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYP 193 (364)
Q Consensus 116 r~~f~~~i~~~l~~~~~DGidiDwe~~~--~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~ 193 (364)
.+-|-.++..+++....- +|-.-.|. +.++-....+++++.++.|.+++..... ...+-+.+..+ ...+.
T Consensus 119 p~~f~~QlrAilra~~~g--~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~--~~~vG~MiEvP----saal~ 190 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEG--NLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDP--DLPVGIMIEVP----SAALM 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHHS--EEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGT--T-EEEEEE-SH----HHHHT
T ss_pred hhhHHHHHHHHHHHHhhc--CCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccc--cceEEEEechh----HHHHH
Confidence 345767776666654422 44445554 3455666778888888888766421111 24455544321 12356
Q ss_pred hhHHhcccceEeeeccccC
Q 035910 194 VDSIRQYLNWVRVMTAGYS 212 (364)
Q Consensus 194 ~~~l~~~vD~v~vm~Yd~~ 212 (364)
...+.+.+|||.|=|-|+.
T Consensus 191 ~~~~~~~~DF~SIGtNDLt 209 (293)
T PF02896_consen 191 ADEFAKEVDFFSIGTNDLT 209 (293)
T ss_dssp HHHHHTTSSEEEEEHHHHH
T ss_pred HHHHHHHCCEEEEChhHHH
Confidence 7789999999999998863
No 175
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.94 E-value=1.3e+02 Score=29.65 Aligned_cols=80 Identities=8% Similarity=0.100 Sum_probs=50.7
Q ss_pred EEEEeEEeeCCCcEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccc--cccCChhhHHHHHHHHHHHHH
Q 035910 51 LMCGFADVNSTSYELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYS--SMAGNPSSRKYFIDSSIKIAR 128 (364)
Q Consensus 51 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~--~~~~~~~~r~~f~~~i~~~l~ 128 (364)
..++|.+|-++|.. ....+.-.-+.+++..|+++ |++.++++--|.. +..+. ---.|++..+.|++=+.-.++
T Consensus 72 fSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~--GI~P~VTL~H~dl--P~~L~~~GGW~n~~~v~~F~~YA~~~f~ 146 (467)
T TIGR01233 72 ISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKR--HVEPFVTLHHFDT--PEALHSNGDFLNRENIEHFIDYAAFCFE 146 (467)
T ss_pred EecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHc--CCEEEEeccCCCC--cHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 34466666665421 12222234467788888887 7999999966665 22111 112367788888888888889
Q ss_pred hCCCcEEEE
Q 035910 129 LCGFQGLDL 137 (364)
Q Consensus 129 ~~~~DGidi 137 (364)
+++ | |..
T Consensus 147 ~fg-d-Vk~ 153 (467)
T TIGR01233 147 EFP-E-VNY 153 (467)
T ss_pred HhC-C-CCE
Confidence 988 7 753
No 176
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=27.83 E-value=2e+02 Score=29.02 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=36.9
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEec-cCCC----C-CcchhhHHHHHHHHHHHHhHhh
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSW-SWAN----T-SWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDw-e~~~----~-~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
.|++-|+.+++.+..|++ .|+||+-+|- .+.. . ..+...-..|++++++.+++..
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~ 231 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREY 231 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhC
Confidence 468888888888888886 8999999993 2221 0 0111112468888888887653
No 177
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=27.71 E-value=5.2e+02 Score=24.28 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHH
Q 035910 80 DTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWR 159 (364)
Q Consensus 80 ~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr 159 (364)
+.+|+..|.+||++-+.+..+ ....+.|.+.+.+.= -.||=|-+.+ ||.-...-..+..-++.|+
T Consensus 161 ~AVr~~~p~~kV~lH~~~~~~------------~~~~~~~f~~l~~~g--~d~DviGlSy-YP~w~~~l~~l~~~l~~l~ 225 (332)
T PF07745_consen 161 KAVREVDPNIKVMLHLANGGD------------NDLYRWFFDNLKAAG--VDFDVIGLSY-YPFWHGTLEDLKNNLNDLA 225 (332)
T ss_dssp HHHHTHSSTSEEEEEES-TTS------------HHHHHHHHHHHHHTT--GG-SEEEEEE--STTST-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEECCCCc------------hHHHHHHHHHHHhcC--CCcceEEEec-CCCCcchHHHHHHHHHHHH
Confidence 477888899999999976443 223344444444331 2355555554 5654345677777888888
Q ss_pred HHHhH
Q 035910 160 ATIDL 164 (364)
Q Consensus 160 ~~l~~ 164 (364)
+++++
T Consensus 226 ~ry~K 230 (332)
T PF07745_consen 226 SRYGK 230 (332)
T ss_dssp HHHT-
T ss_pred HHhCC
Confidence 88854
No 178
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=27.63 E-value=3.9e+02 Score=23.63 Aligned_cols=54 Identities=2% Similarity=-0.140 Sum_probs=36.0
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC-----------CcchhhHHHHHH
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT-----------SWDKYNIGILFK 156 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~-----------~~d~~~~~~~l~ 156 (364)
+.+++++|++.+- +.+ ..+.+.+.+ ++|+|||+.--|.. -.+.+...++++
T Consensus 67 ~~~vivnv~~~~~----------------ee~-~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 67 RALVSVNVRFVDL----------------EEA-YDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred cCCEEEEEecCCH----------------HHH-HHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 4689999998442 122 233344444 69999999987762 136667777788
Q ss_pred HHH
Q 035910 157 EWR 159 (364)
Q Consensus 157 ~lr 159 (364)
.++
T Consensus 129 av~ 131 (231)
T TIGR00736 129 KMK 131 (231)
T ss_pred HHH
Confidence 777
No 179
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.55 E-value=3.6e+02 Score=22.36 Aligned_cols=80 Identities=9% Similarity=0.015 Sum_probs=55.6
Q ss_pred cEEecCCcchhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 035910 63 YELSLSPSNEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWA 142 (364)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~ 142 (364)
..+.+-...+.....+.+.++++.|++++.-.--|.. + ..-.+.+++.+++.+-|=|-+-...|
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f------------~----~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF------------D----EEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC------------C----hhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 3455555566777778888999999998876555422 1 24466778888888888777765554
Q ss_pred CCCcchhhHHHHHHHHHHHHhHh
Q 035910 143 NTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 143 ~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
.. ..|+.+.+..++..
T Consensus 113 kQ-------E~~~~~~~~~l~~~ 128 (172)
T PF03808_consen 113 KQ-------ERWIARHRQRLPAG 128 (172)
T ss_pred HH-------HHHHHHHHHHCCCC
Confidence 32 47888888888763
No 180
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=27.04 E-value=1.4e+02 Score=30.23 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=31.2
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 121 DSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 121 ~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
+|+|+++.+.|+|=.-|||..|......-.|...++.+.++++..
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V 281 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAV 281 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999975322223344444455555443
No 181
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=26.89 E-value=2.3e+02 Score=29.84 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhhCCCcE---EEEEEcC-CCC--CCcccc----------------------------ccccCChhhHHH
Q 035910 73 KQFSNFTDTVKIKNPAIT---TLLSIGG-GNN--PNYSTY----------------------------SSMAGNPSSRKY 118 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~k---vllsigg-~~~--~~~~~~----------------------------~~~~~~~~~r~~ 118 (364)
..++.+++.+|+++|++| |+-+|-| |+. |+...+ .--+-+|+....
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~ 469 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGD 469 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHHH
Confidence 578889999999987655 4555533 543 111111 012335888899
Q ss_pred HHHHHHHHHHhCCCcEEEEeccC
Q 035910 119 FIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 119 f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
|-+..-.+|...|+|||-+|-..
T Consensus 470 FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 470 FYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHcCCCeEEEchhh
Confidence 99999999999999999999654
No 182
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=26.87 E-value=3.2e+02 Score=25.43 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEeccCCCC-----------CcchhhHHHHHHHHHHHH
Q 035910 118 YFIDSSIKIARLCGFQGLDLSWSWANT-----------SWDKYNIGILFKEWRATI 162 (364)
Q Consensus 118 ~f~~~i~~~l~~~~~DGidiDwe~~~~-----------~~d~~~~~~~l~~lr~~l 162 (364)
.|++ .++.+.+.++|+|||+.--|.. -.+.+...++++.+|+++
T Consensus 78 ~~~~-aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~ 132 (321)
T PRK10415 78 EMAD-AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV 132 (321)
T ss_pred HHHH-HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc
Confidence 3443 4455667899999999987741 133445556666666655
No 183
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=26.36 E-value=81 Score=18.94 Aligned_cols=7 Identities=14% Similarity=0.102 Sum_probs=4.0
Q ss_pred CchhhHH
Q 035910 1 MASKIII 7 (364)
Q Consensus 1 M~~~~~~ 7 (364)
|+..++.
T Consensus 1 Mk~l~~a 7 (36)
T PF08194_consen 1 MKCLSLA 7 (36)
T ss_pred CceeHHH
Confidence 6665553
No 184
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=26.32 E-value=3e+02 Score=23.64 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=46.5
Q ss_pred ccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcc
Q 035910 107 SSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPL 186 (364)
Q Consensus 107 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~ 186 (364)
+-|+.+|+ +++. -+..-|.+.+-|..|... + ..++-+.+++.+ ...-+++-+.+.
T Consensus 70 HmMV~~Pe---q~V~----~~a~agas~~tfH~E~~q---~-------~~~lv~~ir~~G--------mk~G~alkPgT~ 124 (224)
T KOG3111|consen 70 HMMVENPE---QWVD----QMAKAGASLFTFHYEATQ---K-------PAELVEKIREKG--------MKVGLALKPGTP 124 (224)
T ss_pred EEeecCHH---HHHH----HHHhcCcceEEEEEeecc---C-------HHHHHHHHHHcC--------CeeeEEeCCCCc
Confidence 45667774 3333 344568999999998432 1 334444455554 466777665544
Q ss_pred cccCCCChhHHhcccceEeeeccc
Q 035910 187 STEAAYPVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 187 ~~~~~~~~~~l~~~vD~v~vm~Yd 210 (364)
.. ++..+.+.+|++.|||-.
T Consensus 125 Ve----~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 125 VE----DLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred HH----HHHHhhccccEEEEEEec
Confidence 33 345567789999999975
No 185
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.28 E-value=3e+02 Score=26.56 Aligned_cols=77 Identities=10% Similarity=0.123 Sum_probs=39.4
Q ss_pred hCCCcEEEEEEcCCCCC-CccccccccCChhhHHHHHHHHHHHHHhCC--Cc-EEEEeccCCCCCcchhhHHHHHHHHHH
Q 035910 85 KNPAITTLLSIGGGNNP-NYSTYSSMAGNPSSRKYFIDSSIKIARLCG--FQ-GLDLSWSWANTSWDKYNIGILFKEWRA 160 (364)
Q Consensus 85 ~~~~~kvllsigg~~~~-~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~--~D-GidiDwe~~~~~~d~~~~~~~l~~lr~ 160 (364)
+.-|.++++-|||++.- +...+..-.+..-.++.+..++....+..+ +| -..+=+ ...-....+|..|++.+..
T Consensus 61 Q~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~--ns~w~~~~~y~~~l~~~g~ 138 (401)
T COG0162 61 QDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVN--NSDWLKKLNYLDFLRDVGK 138 (401)
T ss_pred HHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEe--chHHhCcCCHHHHHHHHHh
Confidence 34489999999997750 000022111222233344466666666655 44 222211 1111344678999988855
Q ss_pred HHh
Q 035910 161 TID 163 (364)
Q Consensus 161 ~l~ 163 (364)
.+.
T Consensus 139 ~~s 141 (401)
T COG0162 139 HFS 141 (401)
T ss_pred Hcc
Confidence 543
No 186
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=26.17 E-value=4.4e+02 Score=22.96 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=34.6
Q ss_pred CCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 87 PAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 87 ~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
.++++++++--... ...| -.+++.+ ++-+...+.+.+.|-|||+++.+. ..+++|.+..+..
T Consensus 56 ~~~piI~T~R~~~e--GG~~---~~~~~~~---~~ll~~~~~~~~~d~vDiEl~~~~---------~~~~~l~~~~~~~ 117 (228)
T TIGR01093 56 PDKPLIFTIRTISE--GGKF---PGNEEEY---LEELKRAADSPGPDFVDIELFLPD---------DAVKELINIAKKG 117 (228)
T ss_pred CCCcEEEEECChhh--CCCC---CCCHHHH---HHHHHHHHHhCCCCEEEEEccCCH---------HHHHHHHHHHHHC
Confidence 46899999954322 2222 1233333 333444446678899999987542 3455665554443
No 187
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=26.08 E-value=56 Score=23.33 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=26.1
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhCCCcE
Q 035910 105 TYSSMAGNPSSRKYFIDSSIKIARLCGFQG 134 (364)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DG 134 (364)
.|..+..+++.|++|.++=-.++++|++..
T Consensus 8 ~~~~~~~~~~~re~f~~dp~a~~~~~~Lt~ 37 (77)
T cd07321 8 LLEQLLVKPEVKERFKADPEAVLAEYGLTP 37 (77)
T ss_pred HHHHHhcCHHHHHHHHhCHHHHHHHcCCCH
Confidence 456778899999999999999999998763
No 188
>PLN03231 putative alpha-galactosidase; Provisional
Probab=26.06 E-value=2.2e+02 Score=27.00 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEe
Q 035910 114 SSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMV 181 (364)
Q Consensus 114 ~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (364)
...+++.+++++...+.|+|=|-+|+-+....... .=++.++++|.+.++ ++.+|+..
T Consensus 159 ~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~----~~y~~m~~AL~~tGR------pIv~Slc~ 216 (357)
T PLN03231 159 EGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQL----DEILTVSKAIRNSGR------PMIYSLSP 216 (357)
T ss_pred hhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccH----HHHHHHHHHHHHhCC------CeEEEecC
Confidence 34577899999999999999999998765331222 235578888887765 57888863
No 189
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=25.82 E-value=2.7e+02 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=27.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
...+.|..-+++.++|.+.++|-||.++.+-
T Consensus 222 ~~~d~r~~Si~~Av~fA~~~nL~Giv~~~~~ 252 (300)
T cd08578 222 NEADPRSRSIKEAVRFAKNNNLLGLILPYSL 252 (300)
T ss_pred cccCchhhhHHHHHHHHHHcCCcEEEecHHH
Confidence 3456788899999999999999999998774
No 190
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=25.54 E-value=4.8e+02 Score=23.22 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCC-CcEEEEeccC
Q 035910 75 FSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCG-FQGLDLSWSW 141 (364)
Q Consensus 75 ~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiDwe~ 141 (364)
.......++...+++++++++.-... ...| -.+++.|.++.+ .+-+.+ .|-|||++..
T Consensus 61 ~~~~~~~l~~~~~~~PiI~T~R~~~e--GG~~---~~~~~~~~~ll~----~~~~~~~~d~vDiEl~~ 119 (253)
T PRK02412 61 VLAAAPAIREKFAGKPLLFTFRTAKE--GGEI---ALSDEEYLALIK----AVIKSGLPDYIDVELFS 119 (253)
T ss_pred HHHHHHHHHHhcCCCcEEEEECChhh--CCCC---CCCHHHHHHHHH----HHHhcCCCCEEEEeccC
Confidence 33444456665567899999964332 2222 123444444433 333445 7999998864
No 191
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=25.23 E-value=2.6e+02 Score=23.00 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccc--------cccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 72 EKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYS--------SMAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 72 ~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~--------~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
...+..+++.+++++|+.+|++.---... ...+. ......+..+.+.+.+.++.+++++-=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVD--EEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCC--HHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 44567777788887889998876332211 11111 112234455677888888888888665655
No 192
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=24.87 E-value=4.2e+02 Score=25.30 Aligned_cols=88 Identities=10% Similarity=0.007 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccc--c
Q 035910 113 PSSRKYFIDSSIKIARLCG-FQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLST--E 189 (364)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~~-~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~--~ 189 (364)
++..+.+.+.|.+.+++-+ ++|+.|=-.--+. .-...-..+++.||+.+++. ..+++++-|.+... -
T Consensus 79 ~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GG-TGSG~gs~l~e~l~~~y~~~---------~~~~~~v~P~~~~~~~v 148 (379)
T cd02190 79 HQYIDSILEKIRKAAEKCDSLQSFFILHSLGGG-TGSGLGTYVLELLADEFPEV---------YRFVTSVYPSADDDVIT 148 (379)
T ss_pred hhHHHHHHHHHHHHHhhCcCcceEEEEeecCCC-cchhHHHHHHHHHHHhcCcc---------ceEEEeecCCCCCCcee
Confidence 5566777888888888765 8999995543332 22223345778899999764 46666655443211 0
Q ss_pred CCC----ChhHHhcccceEeeeccc
Q 035910 190 AAY----PVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 190 ~~~----~~~~l~~~vD~v~vm~Yd 210 (364)
..| -+..|.+++|.+.+.-.|
T Consensus 149 ~~yN~~lsl~~l~~~~d~~i~~~N~ 173 (379)
T cd02190 149 SPYNSVLALRELIEHADCVLPIENQ 173 (379)
T ss_pred cccHHHHHHHHHHHhCCeeEEeccH
Confidence 113 367788889988876543
No 193
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=24.66 E-value=5.3e+02 Score=25.26 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHcC---CCCCceEEEeeeceeeeeecCCCCCCCCCcccCCCCCCCCcccHHHHHHhhhhCCCceEEEEec
Q 035910 234 NTEYRITQWIEDG---LSADKLVVGLPFYGYAWTLVKPEDNGIGAAATGPALRDNGLVTYKEIKNHIKNYGPHVQLMYNS 310 (364)
Q Consensus 234 ~~~~~v~~~~~~g---~p~~KlvlGlp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~ 310 (364)
-++..++.|...+ -|.-.|++|-|-=|.+|-+ |.+=..++.+.-...- ..-..+
T Consensus 107 iVk~~l~~W~~~~~~~~~~p~vlIGTPGIGKS~~~--------------------GS~LLyqLLHy~~~~L-~vVaYf-- 163 (439)
T PF07999_consen 107 IVKRDLDRWLSGRGERDPRPFVLIGTPGIGKSFGT--------------------GSYLLYQLLHYDAEKL-PVVAYF-- 163 (439)
T ss_pred HHHHHHHHHhccCCCCCCCceEEEecCCcCccccc--------------------hhhhhhhhhcCChhhc-cEEEEE--
Confidence 3778888888632 2455699999998888832 2222233333111100 011111
Q ss_pred cceeeEEE--eCC----EEEEECCHHHHHHHHHHHHhCCCCeEEEEeccCCC
Q 035910 311 TYVVNYCS--IGK----IWFGFDDVEAVRVKVSYAKEKKLRGYYMWEVSYDH 356 (364)
Q Consensus 311 ~~~~~y~~--~~~----~~i~ydd~~S~~~K~~~~~~~glgGv~vW~l~~Dd 356 (364)
.....|++ .++ .-+.|.+....-..++-....|..|..|.+++.+.
T Consensus 164 v~~~aYif~k~~~~~~G~Vv~Y~~~~~a~~~i~~~~~~g~~GyiI~Dv~~~~ 215 (439)
T PF07999_consen 164 VGGEAYIFHKTGGGEAGRVVFYKDQEAAVSVINEMSSRGVKGYIIYDVAKKG 215 (439)
T ss_pred EeceEEEEEeccCCcCceEEEecCchHHHHHHHHHHhhCceEEEEEeccccc
Confidence 11255655 233 67889998888888888888999999999998875
No 194
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=24.61 E-value=1.8e+02 Score=26.01 Aligned_cols=45 Identities=7% Similarity=-0.075 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhh
Q 035910 122 SSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEA 166 (364)
Q Consensus 122 ~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~ 166 (364)
..++.+.+.|||+++|....|........-...++++++.+.+.+
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 58 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENN 58 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 466778888999999988877432121222346888888888765
No 195
>PRK08005 epimerase; Validated
Probab=24.61 E-value=3e+02 Score=23.95 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=46.4
Q ss_pred cccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCc
Q 035910 106 YSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSP 185 (364)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~ 185 (364)
.+-|+.+|+ +|+ +.+.+.|.|-|-|.+|-. .....+++.+|+. + ...-+++.+.+
T Consensus 63 vHLMv~~P~---~~i----~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~----G--------~k~GlAlnP~T 117 (210)
T PRK08005 63 FHLMVSSPQ---RWL----PWLAAIRPGWIFIHAESV------QNPSEILADIRAI----G--------AKAGLALNPAT 117 (210)
T ss_pred EEeccCCHH---HHH----HHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc----C--------CcEEEEECCCC
Confidence 456677774 344 344456999999999942 2344556555554 3 23455554433
Q ss_pred ccccCCCChhHHhcccceEeeeccc
Q 035910 186 LSTEAAYPVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 186 ~~~~~~~~~~~l~~~vD~v~vm~Yd 210 (364)
... .+..+.+.+|+|.+|+-+
T Consensus 118 p~~----~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 118 PLL----PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CHH----HHHHHHHhcCEEEEEEec
Confidence 322 244566789999999986
No 196
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=24.54 E-value=3.2e+02 Score=23.65 Aligned_cols=74 Identities=19% Similarity=0.192 Sum_probs=46.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccC
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEA 190 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~ 190 (364)
-||++. .-+..+++.+.+.|.|+|.|-= ...-+.++..++++.+|+..+- +..| .|.
T Consensus 5 iDP~k~-e~~~~ia~~v~~~gtDaI~VGG---S~gvt~~~~~~~v~~ik~~~~l---------Pvil---fp~------- 61 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKDAGTDAIMVGG---SLGIVESNLDQTVKKIKKITNL---------PVIL---FPG------- 61 (205)
T ss_pred cCCCcH-HHHHHHHHHHHhcCCCEEEEcC---cCCCCHHHHHHHHHHHHhhcCC---------CEEE---ECC-------
Confidence 355555 3344477788889999997731 1114667888888888875321 1222 121
Q ss_pred CCChhHHhcccceEeeecc
Q 035910 191 AYPVDSIRQYLNWVRVMTA 209 (364)
Q Consensus 191 ~~~~~~l~~~vD~v~vm~Y 209 (364)
+...+...+|.+.+|+-
T Consensus 62 --~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 62 --NVNGLSRYADAVFFMSL 78 (205)
T ss_pred --CccccCcCCCEEEEEEe
Confidence 23456677999988874
No 197
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=2.8e+02 Score=29.99 Aligned_cols=67 Identities=16% Similarity=0.262 Sum_probs=46.4
Q ss_pred CCCcEEE-EEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhH
Q 035910 86 NPAITTL-LSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDL 164 (364)
Q Consensus 86 ~~~~kvl-lsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~ 164 (364)
.||.|++ +.||... +.+-+.-+.|++.+...++ ++.|=|++.+-.+ ....+...++..+|+...+
T Consensus 334 APgaqIvSl~IGD~R----------LgsMETgtaltRA~~~v~e-~~vDiINmSyGE~---a~~pn~GRviEl~~e~vnK 399 (1304)
T KOG1114|consen 334 APGAQIVSLKIGDGR----------LGSMETGTALTRAMIEVIE-HNVDIINMSYGED---AHLPNSGRVIELLRELVNK 399 (1304)
T ss_pred CCCCEEEEEEecCcc----------ccccccchHHHHHHHHHHH-hcCCEEEeccCcc---CCCCCcchHHHHHHHHhhh
Confidence 4788888 7778643 2334455678888888777 6899999988543 3445566777777777766
Q ss_pred hh
Q 035910 165 EA 166 (364)
Q Consensus 165 ~~ 166 (364)
.+
T Consensus 400 r~ 401 (1304)
T KOG1114|consen 400 RG 401 (1304)
T ss_pred cc
Confidence 65
No 198
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=24.25 E-value=3.9e+02 Score=28.11 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=36.0
Q ss_pred ChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CcchhhHHHHHHHHHHHHhH
Q 035910 112 NPSSRKYFIDSSIKIARLCGFQGLDLSWSWANT--SWDKYNIGILFKEWRATIDL 164 (364)
Q Consensus 112 ~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~--~~d~~~~~~~l~~lr~~l~~ 164 (364)
+|+...+|-+..-++|.+.|+|||-+|=+.... ..+...-.+|.+...++|..
T Consensus 360 ~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggrv~la~~y~~ALe~ 414 (775)
T PLN02219 360 NPKKVFNFYNELHAYLASCGVDGVKVDVQNIIETLGAGHGGRVSLTRSYQQALEA 414 (775)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHHHhhccCCcHHHHHHHHHHHHHH
Confidence 577788999999999999999999999664211 01111125566655555554
No 199
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=24.12 E-value=8.1e+02 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCCCcEEEE
Q 035910 119 FIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 119 f~~~i~~~l~~~~~DGidi 137 (364)
+...+..+|++|++-..-+
T Consensus 120 ~yt~A~PILkkygvpATfF 138 (671)
T PRK14582 120 FYTRVFPILQAFQWPAVWA 138 (671)
T ss_pred hHHHHHHHHHHcCCCEEEE
Confidence 3467889999999877643
No 200
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=24.06 E-value=4.3e+02 Score=25.21 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=57.2
Q ss_pred hhhHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCcchhhH-HHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccc--
Q 035910 113 PSSRKYFIDSSIKIARLCG-FQGLDLSWSWANTSWDKYNI-GILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLST-- 188 (364)
Q Consensus 113 ~~~r~~f~~~i~~~l~~~~-~DGidiDwe~~~~~~d~~~~-~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~-- 188 (364)
++..+.+.+.|.+.+++.+ ++|+.|=-.--+ .....+ ..+++.||+.+++. .++++++-+.+...
T Consensus 69 ~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~G--GTGSG~gs~l~e~l~d~y~~~---------~i~~~~v~P~~~~~~~ 137 (382)
T cd06059 69 PELIDEILDRIRKQVEKCDSLQGFQITHSLGG--GTGSGLGSLLLELLSDEYPKI---------LINTFSIFPSPQGSSN 137 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCceEEEEecCC--CcchhHHHHHHHHHHHhcCcc---------ceEeEEEeccCccCCc
Confidence 5667788888888888776 789998554332 222334 46778899988743 46666665443321
Q ss_pred -cCCC----ChhHHhcccceEeeeccc
Q 035910 189 -EAAY----PVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 189 -~~~~----~~~~l~~~vD~v~vm~Yd 210 (364)
-..| -+..|.+++|.+.+.-.|
T Consensus 138 ~v~~yN~~lsl~~L~e~sd~~i~~~N~ 164 (382)
T cd06059 138 VVEPYNSILSLNHLLENSDSVILFDNE 164 (382)
T ss_pred cccchHHHHhHHHHHhcCCeeEEeehH
Confidence 1113 467888999998887655
No 201
>PRK10426 alpha-glucosidase; Provisional
Probab=23.93 E-value=2.3e+02 Score=29.21 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccc----------------------------cccCChhhHHHHHHHHH
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYS----------------------------SMAGNPSSRKYFIDSSI 124 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~----------------------------~~~~~~~~r~~f~~~i~ 124 (364)
++.+.+++.++++ |+|+++.|--.-..+...|. -=..||+.|+=|.+.+.
T Consensus 269 Pdp~~mi~~L~~~--G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~ 346 (635)
T PRK10426 269 PQLDSRIKQLNEE--GIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIK 346 (635)
T ss_pred CCHHHHHHHHHHC--CCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHH
Confidence 3456677788876 79999887432110011110 11568999999999888
Q ss_pred HHHHhCCCcEEEEecc
Q 035910 125 KIARLCGFQGLDLSWS 140 (364)
Q Consensus 125 ~~l~~~~~DGidiDwe 140 (364)
+.+.+.|+||+=.|+.
T Consensus 347 ~~~~~~Gvdg~w~D~~ 362 (635)
T PRK10426 347 KNMIGLGCSGWMADFG 362 (635)
T ss_pred HHHhhcCCCEEeeeCC
Confidence 8999999999988874
No 202
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=23.81 E-value=72 Score=17.05 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=16.8
Q ss_pred EEEECCHHHHHHHHHHHHhCCC
Q 035910 323 WFGFDDVEAVRVKVSYAKEKKL 344 (364)
Q Consensus 323 ~i~ydd~~S~~~K~~~~~~~gl 344 (364)
.+.++ .++++.|++|.++.|+
T Consensus 10 il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 10 ILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred ccccc-HHHhhHHHHHHHHcCC
Confidence 34566 8999999999997765
No 203
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.62 E-value=2.3e+02 Score=23.25 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
....+..++..+++++|+.+|++.---... ..... .........+.+.+.+.++.++++..=||+
T Consensus 79 ~~~~~~~li~~i~~~~~~~~iv~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~ 143 (189)
T cd01825 79 YRQQLREFIKRLRQILPNASILLVGPPDSL-QKTGA-GRWRTPPGLDAVIAAQRRVAKEEGIAFWDL 143 (189)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEcCCchh-ccCCC-CCcccCCcHHHHHHHHHHHHHHcCCeEEeH
Confidence 356677888888888899998864321110 01100 011123345677888888899888544444
No 204
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=23.50 E-value=1.5e+02 Score=26.54 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHH
Q 035910 122 SSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEW 158 (364)
Q Consensus 122 ~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~l 158 (364)
.+++.+..-|||.|-||.|+-. -+.....++++..
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~i~a~ 65 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAP--NDVSTFIPQLMAL 65 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCC--CCHHHHHHHHHHH
Confidence 3556677789999999999864 4544555555443
No 205
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=23.41 E-value=1.6e+02 Score=26.62 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=24.2
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHH
Q 035910 123 SIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWR 159 (364)
Q Consensus 123 i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr 159 (364)
+++.+..-|||.|-||.|+-. -+......+++.++
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~--~~~~~l~~~i~a~~ 65 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAP--NTIQDLYHQLQAIA 65 (267)
T ss_pred HHHHHHHcCCCEEEEccccCC--CCHHHHHHHHHHHH
Confidence 455666779999999999864 45555555555444
No 206
>PLN02899 alpha-galactosidase
Probab=23.12 E-value=2.3e+02 Score=28.97 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEe
Q 035910 115 SRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMV 181 (364)
Q Consensus 115 ~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~ 181 (364)
.-++|.+++.+...+.|+|=|-+||-++.. .+... .+.++++|++.++ ++.+++..
T Consensus 192 ~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~e----y~~ms~AL~aTGR------PIvySLsp 247 (633)
T PLN02899 192 AGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEE----ITYVSEVLKELDR------PIVYSLSP 247 (633)
T ss_pred chhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHH----HHHHHHHHHHhCC------CeEEEecC
Confidence 446899999999999999999999976532 22222 3678888888766 58888863
No 207
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=23.12 E-value=1.4e+02 Score=23.45 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 88 AITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 88 ~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
|..=++-+|+..+ . -+..-.|...+++ +..+.+.|++.|++.=-|.+.+... .+...|.+.++++.+.+++.
T Consensus 52 GADGV~V~gC~~g--~--Ch~~~Gn~~a~~R-v~~~k~~L~~~Gi~~eRv~~~~~~~-~~~~~fa~~~~~f~~~i~~l 123 (124)
T PF02662_consen 52 GADGVLVAGCHPG--D--CHYREGNYRAEKR-VERLKKLLEELGIEPERVRLYWISA-PEGKRFAEIVNEFTERIKEL 123 (124)
T ss_pred CCCEEEEeCCCCC--C--CCcchhhHHHHHH-HHHHHHHHHHcCCChhHeEEEEeCc-ccHHHHHHHHHHHHHHHHHc
Confidence 5666677777543 2 2222333333333 6778888888898866666666654 77888999999998888753
No 208
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=23.01 E-value=5.1e+02 Score=23.78 Aligned_cols=66 Identities=12% Similarity=0.201 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHhhCCCcEEE-EEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 035910 71 NEKQFSNFTDTVKIKNPAITTL-LSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN 143 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvl-lsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~ 143 (364)
...+++-+...+.+. ++|++ +-.-|+.. +.......-+...|++|++++++-| +++|..|-.-+..
T Consensus 47 SH~DFkYi~~~l~~~--~iR~I~iN~PGf~~--t~~~~~~~~~n~er~~~~~~ll~~l---~i~~~~i~~gHSr 113 (297)
T PF06342_consen 47 SHNDFKYIRPPLDEA--GIRFIGINYPGFGF--TPGYPDQQYTNEERQNFVNALLDEL---GIKGKLIFLGHSR 113 (297)
T ss_pred CccchhhhhhHHHHc--CeEEEEeCCCCCCC--CCCCcccccChHHHHHHHHHHHHHc---CCCCceEEEEecc
Confidence 445566666666666 69977 66677665 5555555567789999998876655 7788888776543
No 209
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=22.93 E-value=5.3e+02 Score=22.79 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccC
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSW 141 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~ 141 (364)
......+..+++...++++++++--... ...|. .+++.|.++. ..+....+.|=|||.++.
T Consensus 47 ~~~~~~i~~l~~~~~~~p~I~T~Rt~~E--GG~~~---~~~~~~~~ll---~~~~~~~~~d~vDiE~~~ 107 (238)
T PRK13575 47 DQLAEMITKLKVLQDSFKLLVTYRTKLQ--GGYGQ---FTNDLYLNLL---SDLANINGIDMIDIEWQA 107 (238)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCChhh--CCCCC---CCHHHHHHHH---HHHHHhCCCCEEEEEccc
Confidence 3444555566665557899999943221 11121 1344444443 345556678999998764
No 210
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=22.23 E-value=5.4e+02 Score=22.55 Aligned_cols=62 Identities=18% Similarity=0.414 Sum_probs=41.6
Q ss_pred CCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-------------cchhhHH
Q 035910 86 NPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTS-------------WDKYNIG 152 (364)
Q Consensus 86 ~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~-------------~d~~~~~ 152 (364)
.+.-++++-|=|++. .|. .-+....++....+++|+-|=|-||... .....|.
T Consensus 15 ~~~~~vlvfVHGyn~----~f~----------~a~~r~aql~~~~~~~~~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~ 80 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNN----SFE----------DALRRAAQLAHDLGFPGVVILFSWPSDGSLLGYFYDRESARFSGPALA 80 (233)
T ss_pred CCCCeEEEEEeCCCC----CHH----------HHHHHHHHHHHHhCCCceEEEEEcCCCCChhhhhhhhhhHHHHHHHHH
Confidence 457899999999875 122 2344455566677899999988888741 1234566
Q ss_pred HHHHHHHHH
Q 035910 153 ILFKEWRAT 161 (364)
Q Consensus 153 ~~l~~lr~~ 161 (364)
.||+.|++.
T Consensus 81 ~~L~~L~~~ 89 (233)
T PF05990_consen 81 RFLRDLARA 89 (233)
T ss_pred HHHHHHHhc
Confidence 777777666
No 211
>COG3226 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.80 E-value=77 Score=26.83 Aligned_cols=26 Identities=12% Similarity=0.482 Sum_probs=23.6
Q ss_pred cCChhhHHHHHHHHHHHHHhCCCcEE
Q 035910 110 AGNPSSRKYFIDSSIKIARLCGFQGL 135 (364)
Q Consensus 110 ~~~~~~r~~f~~~i~~~l~~~~~DGi 135 (364)
..+|..|++.++...++++++|+.+|
T Consensus 9 ~~dp~RRqaIv~Aa~eli~~~Gv~aV 34 (204)
T COG3226 9 PNDPRRRQAIVQAALELIKRYGVHAV 34 (204)
T ss_pred CCChHHHHHHHHHHHHHHHhcchhhh
Confidence 46788999999999999999998876
No 212
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.74 E-value=1.5e+02 Score=29.64 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=40.9
Q ss_pred cccccCChhhHHHHHHHHHHHHHhCCCcE-EEEeccCCCCCcchhhHHHHHHHHHHHHhHh
Q 035910 106 YSSMAGNPSSRKYFIDSSIKIARLCGFQG-LDLSWSWANTSWDKYNIGILFKEWRATIDLE 165 (364)
Q Consensus 106 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DG-idiDwe~~~~~~d~~~~~~~l~~lr~~l~~~ 165 (364)
=.+-++|..-|...++.|.+||.+||||+ |-+-. ...|..+ .|....+.|...|+..
T Consensus 62 dpRpl~dk~~~s~c~~~I~~fL~engf~~~iS~k~--l~~PS~K-dF~~iFkfLY~~Ldp~ 119 (581)
T KOG0995|consen 62 DPRPLSDKRYRSQCIRQIYNFLVENGFSHPISIKL--LMKPSVK-DFIAIFKFLYGFLDPD 119 (581)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHcCCCCChhhhh--cCCCccc-cHHHHHHHHHhccCCC
Confidence 34567788889999999999999999983 22211 1123444 7888888888888653
No 213
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.39 E-value=4.4e+02 Score=21.19 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=37.6
Q ss_pred chhHHHHHHHHHHhhCCCcEEEEEEcCCCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEE
Q 035910 71 NEKQFSNFTDTVKIKNPAITTLLSIGGGNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDL 137 (364)
Q Consensus 71 ~~~~~~~~~~~~k~~~~~~kvllsigg~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 137 (364)
....+..+++.+++++|+.+|++.--- .. . ...-........+-+.+.++.+++++-=||+
T Consensus 70 ~~~~l~~li~~~~~~~~~~~vi~~~~~-p~--~---~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 70 IVANYRTILEKLRKHFPNIKIVVQSIL-PV--G---ELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEecC-Cc--C---ccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 345567778888888888888764211 10 1 0112234556777788888888887765555
No 214
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=21.36 E-value=4.7e+02 Score=22.80 Aligned_cols=93 Identities=6% Similarity=-0.016 Sum_probs=54.0
Q ss_pred CChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccC
Q 035910 111 GNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEA 190 (364)
Q Consensus 111 ~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~ 190 (364)
.++.....+.+.+.+.+++++.+-+.||==.+.-..+......++.+|...+++.+. ...++.-.+.. ..
T Consensus 106 ~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~~~~------t~llt~~~~~~--~~-- 175 (237)
T TIGR03877 106 KDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSGLGC------TSIFVSQVSVG--ER-- 175 (237)
T ss_pred cCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHhCCC------EEEEEECcccc--cc--
Confidence 345566789999999999999999999842211112223344667777777766543 13333322211 10
Q ss_pred CCChhHHhcccceEeeeccccCC
Q 035910 191 AYPVDSIRQYLNWVRVMTAGYSK 213 (364)
Q Consensus 191 ~~~~~~l~~~vD~v~vm~Yd~~~ 213 (364)
..-...+...+|-|..+-|+..+
T Consensus 176 ~~~~~~~~~~~D~vI~L~~~~~~ 198 (237)
T TIGR03877 176 GFGGPGVEHAVDGIIRLDLDEID 198 (237)
T ss_pred cccccceEEEEeEEEEEEEEeeC
Confidence 01012345568988888887654
No 215
>PLN02334 ribulose-phosphate 3-epimerase
Probab=20.95 E-value=4.1e+02 Score=23.12 Aligned_cols=68 Identities=9% Similarity=0.072 Sum_probs=36.6
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCcccccCCCChhHHhcc--
Q 035910 123 SIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTEAAYPVDSIRQY-- 200 (364)
Q Consensus 123 i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~-- 200 (364)
.++.+.+.|.|||-+..|. .. . +.....++.++. . + ..+-+++.+..... ....+...
T Consensus 80 ~~~~~~~~gad~v~vH~~q-~~-~--d~~~~~~~~i~~---~-g--------~~iGls~~~~t~~~----~~~~~~~~~~ 139 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQ-AS-T--IHLHRLIQQIKS---A-G--------MKAGVVLNPGTPVE----AVEPVVEKGL 139 (229)
T ss_pred HHHHHHHcCCCEEEEeecc-cc-c--hhHHHHHHHHHH---C-C--------CeEEEEECCCCCHH----HHHHHHhccC
Confidence 3455567799999888774 11 1 223334443332 2 2 24444443211111 23455567
Q ss_pred cceEeeeccc
Q 035910 201 LNWVRVMTAG 210 (364)
Q Consensus 201 vD~v~vm~Yd 210 (364)
+|||.+|+..
T Consensus 140 ~Dyi~~~~v~ 149 (229)
T PLN02334 140 VDMVLVMSVE 149 (229)
T ss_pred CCEEEEEEEe
Confidence 9999999874
No 216
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=20.94 E-value=74 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCCCCCceE-EEee
Q 035910 235 TEYRITQWIEDGLSADKLV-VGLP 257 (364)
Q Consensus 235 ~~~~v~~~~~~g~p~~Klv-lGlp 257 (364)
.+++.+.+++.|+|++||. .|+|
T Consensus 145 se~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 145 SEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred CHHHHHHHHHcCCChhHEEEeCcc
Confidence 4677788889999999994 4665
No 217
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=20.93 E-value=4.3e+02 Score=22.79 Aligned_cols=41 Identities=15% Similarity=-0.069 Sum_probs=25.8
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHh
Q 035910 123 SIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATID 163 (364)
Q Consensus 123 i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~ 163 (364)
+++.+...|+|-|-||+|....+.+++.=...++++-..+.
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~ 53 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIR 53 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhc
Confidence 44556678999999999987655555443344444333333
No 218
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=20.89 E-value=1e+02 Score=22.26 Aligned_cols=7 Identities=43% Similarity=0.676 Sum_probs=4.1
Q ss_pred CchhhHH
Q 035910 1 MASKIII 7 (364)
Q Consensus 1 M~~~~~~ 7 (364)
|+++.++
T Consensus 1 MaRRlwi 7 (100)
T PF05984_consen 1 MARRLWI 7 (100)
T ss_pred CchhhHH
Confidence 7765444
No 219
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=20.81 E-value=6.6e+02 Score=23.49 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhCCCcEEEEEE------cC-CCCCCccccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 035910 74 QFSNFTDTVKIKNPAITTLLSI------GG-GNNPNYSTYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWAN 143 (364)
Q Consensus 74 ~~~~~~~~~k~~~~~~kvllsi------gg-~~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~ 143 (364)
+...+++.++++ ++|+++.+ |. |. ....|-. ..+++.|+=+.+ ..+.+.+.|+||+=+|+-.|.
T Consensus 65 dp~~mv~~L~~~--G~klv~~i~P~i~~g~~~~--~~~~~pD-ftnp~ar~wW~~-~~~~l~~~Gv~~~W~DmnEp~ 135 (332)
T cd06601 65 NPKEMFDNLHNK--GLKCSTNITPVISYGGGLG--SPGLYPD-LGRPDVREWWGN-QYKYLFDIGLEFVWQDMTTPA 135 (332)
T ss_pred CHHHHHHHHHHC--CCeEEEEecCceecCccCC--CCceeeC-CCCHHHHHHHHH-HHHHHHhCCCceeecCCCCcc
Confidence 345677778876 67877654 21 22 2334444 358889986654 455566679999988986553
No 220
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.65 E-value=2e+02 Score=25.73 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHH
Q 035910 123 SIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEW 158 (364)
Q Consensus 123 i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~l 158 (364)
+++.+..-|||.|-||.|+-. -+...+..+++..
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~~~a~ 58 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAP--NDVLTFIPQLMAL 58 (249)
T ss_pred HHHHHHhcCCCEEEEecccCC--CCHHHHHHHHHHH
Confidence 456667789999999999864 3444455555443
No 221
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=20.39 E-value=5.3e+02 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEEcCCC
Q 035910 73 KQFSNFTDTVKIKNPAITTLLSIGGGN 99 (364)
Q Consensus 73 ~~~~~~~~~~k~~~~~~kvllsigg~~ 99 (364)
.....+++.++++.|+++|+++..-.+
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~t 61 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPT 61 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CC
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 345677888999999999999997533
No 222
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=20.09 E-value=4.8e+02 Score=22.88 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=46.0
Q ss_pred ccccccCChhhHHHHHHHHHHHHHhCCCcEEEEeccCCCCCcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecC
Q 035910 105 TYSSMAGNPSSRKYFIDSSIKIARLCGFQGLDLSWSWANTSWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYS 184 (364)
Q Consensus 105 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiDwe~~~~~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~ 184 (364)
..+-|+.+| .+++ +..-+.|.|-|-+..| .. ...-..++.+|+. + ..-.+++-+.
T Consensus 65 DvHLMV~~p---~~~i----~~fa~agad~It~H~E--~~----~~~~r~i~~Ik~~----G--------~kaGv~lnP~ 119 (220)
T COG0036 65 DVHLMVENP---DRYI----EAFAKAGADIITFHAE--AT----EHIHRTIQLIKEL----G--------VKAGLVLNPA 119 (220)
T ss_pred EEEEecCCH---HHHH----HHHHHhCCCEEEEEec--cC----cCHHHHHHHHHHc----C--------CeEEEEECCC
Confidence 345667666 2333 3344568999999998 21 2345566666654 2 2344444433
Q ss_pred cccccCCCChhHHhcccceEeeeccc
Q 035910 185 PLSTEAAYPVDSIRQYLNWVRVMTAG 210 (364)
Q Consensus 185 ~~~~~~~~~~~~l~~~vD~v~vm~Yd 210 (364)
+... .+.-+.+.+|+|.+||-+
T Consensus 120 Tp~~----~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 120 TPLE----ALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred CCHH----HHHHHHhhCCEEEEEeEC
Confidence 3322 245566789999999976
No 223
>PRK05474 xylose isomerase; Provisional
Probab=20.01 E-value=6.3e+02 Score=24.64 Aligned_cols=105 Identities=11% Similarity=0.137 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhh--CCCcEEEEEEcCCCCCCcccccc-cc--CChhhHHHHHHH---HHHHHHhCCCcEEEEecc-----
Q 035910 74 QFSNFTDTVKIK--NPAITTLLSIGGGNNPNYSTYSS-MA--GNPSSRKYFIDS---SIKIARLCGFQGLDLSWS----- 140 (364)
Q Consensus 74 ~~~~~~~~~k~~--~~~~kvllsigg~~~~~~~~~~~-~~--~~~~~r~~f~~~---i~~~l~~~~~DGidiDwe----- 140 (364)
.+..++..+|++ ..|+|++...-+-.. ...|.. .+ .|++-|+.-+.. .++..++-|-..+.| |-
T Consensus 116 ~l~~i~~~~k~~~~~tGikllw~TanlFs--~prf~~GA~Tnpd~~Vra~A~~qvk~alD~~~eLGge~yV~-WgGREGy 192 (437)
T PRK05474 116 NLDEIVDYLKEKQAETGVKLLWGTANLFS--NPRYMAGAATNPDPDVFAYAAAQVKTALDATKRLGGENYVF-WGGREGY 192 (437)
T ss_pred HHHHHHHHHHHHHHhhCCeeeeeccCccC--CccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-CCCcccc
Confidence 344555555553 358898866544322 233322 22 245555554444 445556666555554 32
Q ss_pred -CCCC---CcchhhHHHHHHHHHHHHhHhhhcCCCCceEEEEEEeecCccccc
Q 035910 141 -WANT---SWDKYNIGILFKEWRATIDLEARNNSSQSQLILTAMVAYSPLSTE 189 (364)
Q Consensus 141 -~~~~---~~d~~~~~~~l~~lr~~l~~~~~~~~~~~~~~ls~a~~~~~~~~~ 189 (364)
++.. ....+.+..|++++.+.-++.+ +...+.+.+-|....
T Consensus 193 e~~~ntD~~~e~d~~~~~l~~v~dYa~~iG--------f~~~f~IEPKP~EPr 237 (437)
T PRK05474 193 ETLLNTDLKREREQLARFLQMVVDYKHKIG--------FKGTFLIEPKPQEPT 237 (437)
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHhhhcC--------CCceEEeccCCCCCC
Confidence 2222 1344668888888888777664 556777777666544
Done!