BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035912
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IIR|A Chain A, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
pdb|3IIR|B Chain B, Crystal Structure Of Miraculin Like Protein From Seeds Of
Mu Koenigii
Length = 190
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Query: 52 QSTIWKLDKFDVALGQWFVTIGGVEGNPGPQTTRNWFKIEKF---YGDYELVCCPLVCKF 108
+ T+W++D +D + G+WF+T GGVEGNPG QT +NWFK+E+ G YE+V CP VCK
Sbjct: 87 EPTVWRVDNYDPSRGKWFITTGGVEGNPGAQTLKNWFKLERVGTDQGTYEIVHCPSVCKS 146
Query: 109 CKVLC 113
C LC
Sbjct: 147 CVFLC 151
>pdb|1R8N|A Chain A, The Crystal Structure Of The Kunitz (Sti) Type Inhibitor
From Seeds Of Delonix Regia
Length = 185
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 18 LHVVQEQNIQKYGLPMTFSPVNPKKGVIFAKTSVQSTIWKLDKFDVA----------LGQ 67
+ ++QEQ+ + GLP+ FS K+G I+ T ++ I ++K D A G+
Sbjct: 46 MSIIQEQSDLQMGLPVRFSSPEEKQGKIYTDTELE--IEFVEKPDCAESSKWVIVKDSGE 103
Query: 68 WFVTIGGVEGNPGPQTTRNWFKIEKFYG-DYELVCCPLV-CKFCKVLCIFINGGVRHLAL 125
V IGG E +P + R +FKIEK Y+LV CP C + I G R L L
Sbjct: 104 ARVAIGGSEDHPQGELVRGFFKIEKLGSLAYKLVFCPKSDSGSCSDIGINYE-GRRSLVL 162
Query: 126 ---SDVPFNVIFLK 136
DVPF V+F+K
Sbjct: 163 KSSDDVPFRVVFVK 176
>pdb|1AVA|C Chain C, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|D Chain D, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|3BX1|D Chain D, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|C Chain C, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
Length = 181
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 25/138 (18%)
Query: 18 LHVVQEQNIQKYGLPMTFSP--VNPKKGVIFAKTSV-----------QSTIWKLDKFDVA 64
L V Q+ N Q G P+ +P V P +I T V QST W +D ++A
Sbjct: 45 LFVSQDPNGQHDGFPVRITPYGVAPSDKIIRLSTDVRISFRAYTTCLQSTEWHIDS-ELA 103
Query: 65 LGQWFVTIGGVEGNPGPQTTRNWFKIEKFYG----DYELVCCPLVCKFCKVLCIF--ING 118
G+ V G V+ +P P N F+IEK+ G +Y+L+ C +C+ L +F + G
Sbjct: 104 AGRRHVITGPVK-DPSPSGRENAFRIEKYSGAEVHEYKLMSC---GDWCQDLGVFRDLKG 159
Query: 119 GVRHLALSDVPFNVIFLK 136
G L ++ P++V+ K
Sbjct: 160 GAWFLGATE-PYHVVVFK 176
>pdb|2QN4|A Chain A, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
pdb|2QN4|B Chain B, Structure And Function Study Of Rice Bifunctional Alpha-
AmylaseSUBTILISIN INHIBITOR FROM ORYZA SATIVA
Length = 200
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 18 LHVVQEQNIQKYGLPMTFSP----VNPKKGVIFAKTSV-----------QSTIWKLDKFD 62
L V QE + ++ G P+ F+P P+ I T V QST W +
Sbjct: 65 LLVAQETDERRKGFPVRFTPWGGAAAPEDRTIRVSTDVRIRFNAATICVQSTEWHVGDEP 124
Query: 63 VALGQWFVTIGGVEGNPGPQTTRNWFKIEKFYGDYELVCCPLVCKFCKVLCIFINGGVRH 122
+ + VT G P P N F++EK+ G Y+LV C C+ L + +G
Sbjct: 125 LTGARRVVT--GPLIGPSPSGRENAFRVEKYGGGYKLVSC---RDSCQDLGVSRDGARAW 179
Query: 123 LALSDVPFNVIFLKA 137
L S P V+F KA
Sbjct: 180 LGASQPPHVVVFKKA 194
>pdb|2IWT|B Chain B, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 189
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 25/138 (18%)
Query: 18 LHVVQEQNIQKYGLPMTFSP--VNPKKGVIFAKTSV-----------QSTIWKLDKFDVA 64
L V Q+ N Q G P+ +P V P +I T V QST W +D ++A
Sbjct: 53 LFVSQDPNGQHDGFPVRITPYGVAPSDKIIRLSTDVRISFRAYTTCLQSTEWHIDS-ELA 111
Query: 65 LGQWFVTIGGVEGNPGPQTTRNWFKIEKFYG----DYELVCCPLVCKFCKVLCIF--ING 118
G+ V G V+ +P P N F+IEK+ G +Y+L+ +C+ L +F + G
Sbjct: 112 AGRRHVITGPVK-DPSPSGRENAFRIEKYSGAEVHEYKLMSS---GDWCQDLGVFRDLKG 167
Query: 119 GVRHLALSDVPFNVIFLK 136
G L ++ P++V+ K
Sbjct: 168 GAWFLGATE-PYHVVVFK 184
>pdb|3TC2|A Chain A, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|B Chain B, Crystal Structure Of Potato Serine Protease Inhibitor.
pdb|3TC2|C Chain C, Crystal Structure Of Potato Serine Protease Inhibitor
Length = 187
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 38 VNPKKGVIFAKTSVQSTIWKLDKFDVALGQWFVTIGGVEGNPGPQTTRNWFKIEKF--YG 95
+N + + +K V TIWK+ +D +LG + GG G Q +WFKI K +G
Sbjct: 85 LNIQFAISTSKMCVSYTIWKVGDYDASLGTMLLETGGTIG----QADSSWFKIVKSSQFG 140
Query: 96 DYELVCCPLVC----KFCKVLCIFINGGVRHLAL-SDVPFNVIF 134
Y L+ CP+ +FC + + G R LAL D P +V F
Sbjct: 141 -YNLLYCPVTTSSDDQFCLKVGVVHQNGKRRLALVKDNPLDVSF 183
>pdb|3S8J|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8J|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 2.6a Resolution
pdb|3S8K|A Chain A, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
pdb|3S8K|B Chain B, Crystal Structure Of A Papaya Latex Serine Protease
Inhibitor (Ppi) At 1.7a Resolution
Length = 184
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 52 QSTIWKLDKFDVALGQWFVTIGGVEGNPGPQTTRNWFKIEK--FYGDYELVCCPLVCKFC 109
++T WK+D+F +G W VT+GG +G G ++T + FKI+K Y+ CP +
Sbjct: 91 ETTAWKVDRFPGVIG-WTVTLGGEKGYHGFESTHSMFKIKKAGLPFSYKFHFCPSYPRTR 149
Query: 110 KVLC-----IFINGGVRHLALSDVPFNVIFLKA 137
+ C F +R L L++ +F+K
Sbjct: 150 LIPCNNVDIFFDKYRIRRLILTNDAKEFVFIKT 182
>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 108 FCKVLCIFINGGVRHLALSDVPFNVI 133
F L FI+ G+ +A+SD+P++++
Sbjct: 385 FLNNLTTFIDNGLTEIAISDLPYDIV 410
>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 108 FCKVLCIFINGGVRHLALSDVPFNVI 133
F L FI+ G+ +A+SD+P++++
Sbjct: 385 FLNNLTTFIDNGLTEIAISDLPYDIV 410
>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
Triad In The C-Terminal Region Of Pasteurella Multocida
Toxin
Length = 746
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 108 FCKVLCIFINGGVRHLALSDVPFNVI 133
F L FI+ G+ +A+SD+P++++
Sbjct: 385 FLNNLTTFIDNGLTEIAISDLPYDIV 410
>pdb|3ME0|B Chain B, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 128
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 60 KFDVALGQWFVTIGGVEGNPGPQTTRNWFKI--------EKFYGDYELVCCPLVCKFCKV 111
KF V LG + +I V G +TT W+K + YG+ + ++ +
Sbjct: 64 KFSVGLGHGWDSIVSVNGVDTGETTMRWYKAGTQNLTIGSRLYGESSKIQPGVLSGSATL 123
Query: 112 LCIF 115
L I
Sbjct: 124 LMIL 127
>pdb|2WMP|B Chain B, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 123
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 60 KFDVALGQWFVTIGGVEGNPGPQTTRNWFKI--------EKFYGDYELVCCPLVCKFCKV 111
KF V LG + +I V G +TT W+K + YG+ + ++ +
Sbjct: 59 KFSVGLGHGWDSIVSVNGVDTGETTMRWYKAGTQNLTIGSRLYGESSKIQPGVLSGSATL 118
Query: 112 LCIF 115
L I
Sbjct: 119 LMIL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.142 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,457,418
Number of Sequences: 62578
Number of extensions: 181106
Number of successful extensions: 511
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 14
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)