Query 035912
Match_columns 137
No_of_seqs 103 out of 256
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 07:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00452 STI Soybean trypsin 100.0 1.4E-42 3E-47 264.7 15.0 125 7-137 29-171 (172)
2 cd00178 STI Soybean trypsin in 100.0 2.1E-42 4.7E-47 263.6 14.5 125 7-136 30-172 (172)
3 PF00197 Kunitz_legume: Trypsi 100.0 1.1E-41 2.4E-46 260.3 13.5 126 7-136 30-176 (176)
4 TIGR02652 conserved hypothetic 38.1 24 0.00052 26.6 1.9 27 27-64 121-147 (163)
5 PF09654 DUF2396: Protein of u 36.9 26 0.00057 26.4 1.9 29 27-66 119-147 (161)
6 COG4066 Uncharacterized protei 34.1 42 0.00091 25.5 2.6 28 74-104 114-141 (165)
7 KOG3352 Cytochrome c oxidase, 24.2 94 0.002 23.5 3.0 32 67-102 109-148 (153)
8 PF09888 DUF2115: Uncharacteri 21.9 1.6E+02 0.0035 22.2 4.0 27 74-103 115-141 (163)
9 PF12702 Lipocalin_3: Lipocali 21.5 64 0.0014 22.2 1.6 37 52-94 40-76 (93)
10 PF15165 REC114-like: Meiotic 20.3 1.1E+02 0.0025 24.8 3.0 22 51-72 26-47 (243)
No 1
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=100.00 E-value=1.4e-42 Score=264.66 Aligned_cols=125 Identities=43% Similarity=0.705 Sum_probs=111.1
Q ss_pred cccCCCccccccceEeccccCCCCeeEEEEcCCCCCCeeecCCC-----------CCCcceEEeecCCcCcceEEEEcCC
Q 035912 7 RISNNDNKTFSLHVVQEQNIQKYGLPMTFSPVNPKKGVIFAKTS-----------VQSTIWKLDKFDVALGQWFVTIGGV 75 (137)
Q Consensus 7 ~l~~t~n~~CPl~VvQ~~~~~~~GlPV~Fsp~~~~~~~I~e~t~-----------~~st~W~V~~~d~~~~~~~V~~gg~ 75 (137)
+|++++|++||++|+|++++..+||||+|+|++.+.++|+|+|+ ++||+|+|++ +...++|+|+|||
T Consensus 29 ~l~~~~n~~CPl~VvQ~~~~~~~GlPV~Fs~~~~~~~ii~e~t~lnI~F~~~~~C~~st~W~V~~-~~~~~~~~V~~gg- 106 (172)
T smart00452 29 TLAATGNEICPLTVVQSPNEVDNGLPVKFSPPNPSDFIIRESTDLNIEFDAPPLCAQSTVWTVDE-DSAPEGLAVKTGG- 106 (172)
T ss_pred EEccCCCCCCCCeeEECCCCCCCceeEEEeecCCCCCEEecCceEEEEeCCCCCCCCCCEEEEec-CCccccEEEEeCC-
Confidence 67889999999999999999999999999998667899999998 6789999996 5567899999998
Q ss_pred CCCCCCCCCcccEEEEEeCC---cceEEecCCCCC--CCceeEEEe-cCCeEEEEecC-CCeEEEEEeC
Q 035912 76 EGNPGPQTTRNWFKIEKFYG---DYELVCCPLVCK--FCKVLCIFI-NGGVRHLALSD-VPFNVIFLKA 137 (137)
Q Consensus 76 ~g~pg~~t~~~~FkIeK~~~---~YKLvfCp~~~~--~C~~vci~~-~~G~rrL~l~~-~p~~V~F~ka 137 (137)
+|+.. .|||||||+++ .|||+|||..|+ .|.++||++ ++|+|||||++ +||.|+|+||
T Consensus 107 --~~~~~--~~~FkIek~~~~~~~YKLv~Cp~~~~~~~C~~vGi~~d~~g~rrL~ls~~~p~~v~F~k~ 171 (172)
T smart00452 107 --YPGVR--DSWFKIEKYSGESNGYKLVYCPNGSDDDKCGDVGIFIDPEGGRRLVLSNENPLVVVFKKA 171 (172)
T ss_pred --cCCCC--CCeEEEEECCCCCCCEEEEEcCCCCCCCccCccCeEECCCCcEEEEEcCCCCeEEEEEEC
Confidence 44433 69999999986 699999998764 699999998 48999999997 6999999997
No 2
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=100.00 E-value=2.1e-42 Score=263.58 Aligned_cols=125 Identities=47% Similarity=0.768 Sum_probs=112.9
Q ss_pred cccCCCccccccceEeccccCCCCeeEEEEcCCCCCCeeecCCC------------CCCcceEEeecCCcCcceEEEEcC
Q 035912 7 RISNNDNKTFSLHVVQEQNIQKYGLPMTFSPVNPKKGVIFAKTS------------VQSTIWKLDKFDVALGQWFVTIGG 74 (137)
Q Consensus 7 ~l~~t~n~~CPl~VvQ~~~~~~~GlPV~Fsp~~~~~~~I~e~t~------------~~st~W~V~~~d~~~~~~~V~~gg 74 (137)
+|++++|++||++|+|++++..+|+||+|+|++.++++|+|+++ ++|++|+|++++. .++|||+|||
T Consensus 30 ~l~~~~~~~CPl~VvQ~~~~~~~GlPv~Fs~~~~~~~~I~e~t~lnI~F~~~~~c~~~st~W~V~~~~~-~~~~~V~~Gg 108 (172)
T cd00178 30 TLAATGNETCPLTVVQSPSELDRGLPVKFSPPNPKSDVIRESTDLNIEFDAPTWCCGSSTVWKVDRDST-PEGLFVTTGG 108 (172)
T ss_pred EEcCCCCCCCCCeeEECCCCCCCCeeEEEEeCCCCCCEEECCCcEEEEeCCCCcCCCCCCEEEEeccCC-ccCeEEEeCC
Confidence 57889999999999999999999999999998668999999999 4789999997655 7899999999
Q ss_pred CCCCCCCCCCcccEEEEEeCC---cceEEecCCCC-CCCceeEEEec-CCeEEEEecC-CCeEEEEEe
Q 035912 75 VEGNPGPQTTRNWFKIEKFYG---DYELVCCPLVC-KFCKVLCIFIN-GGVRHLALSD-VPFNVIFLK 136 (137)
Q Consensus 75 ~~g~pg~~t~~~~FkIeK~~~---~YKLvfCp~~~-~~C~~vci~~~-~G~rrL~l~~-~p~~V~F~k 136 (137)
.+++ +.+|||||||+++ .|||+|||+.| ..|.++||+++ +|.|||+|++ +||.|+|+|
T Consensus 109 ~~~~----~~~~~FkIek~~~~~~~YKL~~Cp~~~~~~C~~VGi~~d~~g~rrL~l~~~~p~~V~F~k 172 (172)
T cd00178 109 VKGN----TLNSWFKIEKVSEGLNAYKLVFCPSSCDSKCGDVGIFIDPEGVRRLVLSDDNPLVVVFKK 172 (172)
T ss_pred cCCC----cccceEEEEECCCCCCcEEEEEcCCCCCCceeecccEECCCCcEEEEEcCCCCeEEEEeC
Confidence 8875 6899999999986 79999999865 36999999984 8999999998 899999997
No 3
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=100.00 E-value=1.1e-41 Score=260.27 Aligned_cols=126 Identities=46% Similarity=0.758 Sum_probs=110.2
Q ss_pred cccCCCccccccceEeccccCCCCeeEEEEcC--CCCCCeeecCCC-----------CCCcceEEeecCCcCcceEEEEc
Q 035912 7 RISNNDNKTFSLHVVQEQNIQKYGLPMTFSPV--NPKKGVIFAKTS-----------VQSTIWKLDKFDVALGQWFVTIG 73 (137)
Q Consensus 7 ~l~~t~n~~CPl~VvQ~~~~~~~GlPV~Fsp~--~~~~~~I~e~t~-----------~~st~W~V~~~d~~~~~~~V~~g 73 (137)
+|++++|++|||+|+|++++..+|+||+|+|+ +..+++|+|+++ .++++|+|++++++.++ ||+||
T Consensus 30 ~l~~~~n~~CPl~Vvq~~~~~~~GlPv~Fs~~~~~~~~~~ir~st~l~I~F~~~~~c~~~~~W~V~~~~~~~~~-~V~~g 108 (176)
T PF00197_consen 30 TLAKTGNETCPLDVVQSPSELSRGLPVKFSPPYRNSFDTVIRESTDLNIEFSSPTSCACSTVWKVVKDDPETGQ-FVKTG 108 (176)
T ss_dssp EEECCTTSSSSEEEEEESSTTS-BSEEEEEESSSSSSTBCTBTTSEEEEEESSECTTSSSSBEEEEEETTTTEE-EEEEE
T ss_pred EecCCCCCCCChheEEccCCCCCceeEEEEeCCcccCCCeeEcceEEEEEEccCCCCCccCEEEEeecCcccce-EEEeC
Confidence 58899999999999999999999999999993 456789999999 56789999987765444 99999
Q ss_pred CCCCCCCCCCCcccEEEEEeCCc----ceEEecCCC--CCCCceeEEEe-cCCeEEEEecC-CCeEEEEEe
Q 035912 74 GVEGNPGPQTTRNWFKIEKFYGD----YELVCCPLV--CKFCKVLCIFI-NGGVRHLALSD-VPFNVIFLK 136 (137)
Q Consensus 74 g~~g~pg~~t~~~~FkIeK~~~~----YKLvfCp~~--~~~C~~vci~~-~~G~rrL~l~~-~p~~V~F~k 136 (137)
|..+ .++..|||||||++.+ |||+|||.. ...|.++||++ ++|+|||+|++ +||.|+|||
T Consensus 109 g~~~---~~~~~~~FkIek~~~~~~~~YKLvfCp~~~~~~~C~dvGi~~d~~g~rrL~l~~~~p~~V~F~K 176 (176)
T PF00197_consen 109 GVKG---PETVDSWFKIEKYEDGFNNAYKLVFCPSVCCDSLCGDVGIYFDDNGNRRLALSDDNPFVVVFQK 176 (176)
T ss_dssp SSSS---SGCGCCEEEEEEESSSSTTEEEEEEESSSSSTSSEEEEEEEEETTSEEEEEEESSSB-EEEEEE
T ss_pred Cccc---CCccCcEEEEEEeCCCCCCcEEEEECCCccccCccceeeEEEcCCCeEEEEECCCCcEEEEEEC
Confidence 9887 5789999999999874 999999986 35799999999 58999999998 899999998
No 4
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=38.10 E-value=24 Score=26.60 Aligned_cols=27 Identities=37% Similarity=0.838 Sum_probs=19.1
Q ss_pred CCCCeeEEEEcCCCCCCeeecCCCCCCcceEEeecCCc
Q 035912 27 QKYGLPMTFSPVNPKKGVIFAKTSVQSTIWKLDKFDVA 64 (137)
Q Consensus 27 ~~~GlPV~Fsp~~~~~~~I~e~t~~~st~W~V~~~d~~ 64 (137)
.--||||.|+|... +..-|.|.++|-+
T Consensus 121 rLYGLPveFsp~~~-----------~~~~W~VINFdle 147 (163)
T TIGR02652 121 RLYGLPVEFSPAAK-----------QDPRWAVINFELE 147 (163)
T ss_pred cccccceeccCCCC-----------CCCceeEEEeEee
Confidence 34799999998521 1358999887654
No 5
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=36.90 E-value=26 Score=26.36 Aligned_cols=29 Identities=34% Similarity=0.753 Sum_probs=20.0
Q ss_pred CCCCeeEEEEcCCCCCCeeecCCCCCCcceEEeecCCcCc
Q 035912 27 QKYGLPMTFSPVNPKKGVIFAKTSVQSTIWKLDKFDVALG 66 (137)
Q Consensus 27 ~~~GlPV~Fsp~~~~~~~I~e~t~~~st~W~V~~~d~~~~ 66 (137)
.--||||.|+|... +..-|.|.++|-+.+
T Consensus 119 rLYGLPveFsp~~~-----------~d~~W~VINFdlekE 147 (161)
T PF09654_consen 119 RLYGLPVEFSPDPD-----------EDPCWQVINFDLEKE 147 (161)
T ss_pred ceeccceecCCCCC-----------CCCceeEEEeeeccC
Confidence 34799999998521 135899988876433
No 6
>COG4066 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.14 E-value=42 Score=25.54 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCcccEEEEEeCCcceEEecCC
Q 035912 74 GVEGNPGPQTTRNWFKIEKFYGDYELVCCPL 104 (137)
Q Consensus 74 g~~g~pg~~t~~~~FkIeK~~~~YKLvfCp~ 104 (137)
|..=||-.-++.|-|||+|.++.| |||.
T Consensus 114 kEPlHPpgt~FPGgfkVrkkgnvy---YCPV 141 (165)
T COG4066 114 KEPLHPPGTTFPGGFKVRKKGNVY---YCPV 141 (165)
T ss_pred CCCCCCCCCcCCCceEEEeeCCEE---eccc
Confidence 333456445689999999998765 8994
No 7
>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]
Probab=24.16 E-value=94 Score=23.54 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCCCCCCcccEEEEEeCC--------cceEEec
Q 035912 67 QWFVTIGGVEGNPGPQTTRNWFKIEKFYG--------DYELVCC 102 (137)
Q Consensus 67 ~~~V~~gg~~g~pg~~t~~~~FkIeK~~~--------~YKLvfC 102 (137)
.+.|.-|..++ ++.-.||.|+|-+. -|||+.=
T Consensus 109 ~RiVGC~c~eD----~~~V~Wmwl~Kge~~rc~eCG~~fkL~~v 148 (153)
T KOG3352|consen 109 KRIVGCGCEED----SHAVVWMWLEKGETQRCPECGHYFKLVPV 148 (153)
T ss_pred ceEEeecccCC----CcceEEEEEEcCCcccCCcccceEEeeec
Confidence 45677766555 34457999999863 3777653
No 8
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=21.90 E-value=1.6e+02 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=19.8
Q ss_pred CCCCCCCCCCCcccEEEEEeCCcceEEecC
Q 035912 74 GVEGNPGPQTTRNWFKIEKFYGDYELVCCP 103 (137)
Q Consensus 74 g~~g~pg~~t~~~~FkIeK~~~~YKLvfCp 103 (137)
+.++||=.-...|-|+|++-++.| |||
T Consensus 115 ~~PlHPvG~~FPGG~~V~~~~g~Y---YCP 141 (163)
T PF09888_consen 115 KEPLHPVGMPFPGGFKVEEKNGNY---YCP 141 (163)
T ss_pred CCCCCCCCCCCCCCeEEEEECCEE---eCc
Confidence 455666333478999999998766 898
No 9
>PF12702 Lipocalin_3: Lipocalin-like; InterPro: IPR024311 This is a family of proteins of 115 residues on average. There are 16 subunits in each asymmetric unit cell. The interface interaction indicates that the biomolecule of protein Q8A9E6 from SWISSPROT should be a monomer. The family has two highly conserved tryptophan residues. The fold is very similar to the lipocalin-like fold from several comparable structures.; PDB: 3HTY_I.
Probab=21.51 E-value=64 Score=22.19 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCcceEEeecCCcCcceEEEEcCCCCCCCCCCCcccEEEEEeC
Q 035912 52 QSTIWKLDKFDVALGQWFVTIGGVEGNPGPQTTRNWFKIEKFY 94 (137)
Q Consensus 52 ~st~W~V~~~d~~~~~~~V~~gg~~g~pg~~t~~~~FkIeK~~ 94 (137)
....|++.. + ..+-.|-..|+-+.......|+|+|..
T Consensus 40 ~y~~Wk~~g-~-----~Lil~g~s~Gn~~~~~~~~t~~I~~lt 76 (93)
T PF12702_consen 40 QYEKWKLEG-N-----KLILEGESIGNGQSSEFTDTFDIEKLT 76 (93)
T ss_dssp EEEEEEEET-T-----EEEEEEEEEETTEEEEEEEEEEEEEE-
T ss_pred ceeeEEEcC-C-----EEEEEEEEccCCccEEEEEEEEEEEeC
Confidence 456899652 2 246666556654334457789999985
No 10
>PF15165 REC114-like: Meiotic recombination protein REC114-like
Probab=20.27 E-value=1.1e+02 Score=24.75 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=15.2
Q ss_pred CCCcceEEeecCCcCcceEEEE
Q 035912 51 VQSTIWKLDKFDVALGQWFVTI 72 (137)
Q Consensus 51 ~~st~W~V~~~d~~~~~~~V~~ 72 (137)
+.|+.|||.+.+++++..-++|
T Consensus 26 ~~s~~wkv~es~ee~~~lvlti 47 (243)
T PF15165_consen 26 ASSPSWKVFESNEESGYLVLTI 47 (243)
T ss_pred CCCccceeecccccCCceEEEE
Confidence 5689999987666666544444
Done!