Query 035914
Match_columns 93
No_of_seqs 106 out of 202
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035914.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035914hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_k 60S ribosomal protein L 100.0 1.1E-49 3.9E-54 279.1 -2.1 88 1-88 1-105 (112)
2 3izc_k 60S ribosomal protein R 100.0 3.3E-48 1.1E-52 267.4 0.3 82 1-85 1-99 (100)
3 4a18_Q RPL36, 60S ribosomal pr 100.0 5.2E-46 1.8E-50 257.9 7.5 79 7-85 2-103 (104)
4 3qks_C DNA double-strand break 51.3 5 0.00017 22.5 0.8 13 36-48 4-16 (34)
5 3r0a_A Putative transcriptiona 39.6 21 0.0007 22.9 2.6 39 26-64 14-53 (123)
6 2oyn_A Hypothetical protein MJ 31.7 20 0.00068 25.4 1.6 30 11-40 14-43 (146)
7 2yy0_A C-MYC-binding protein; 30.6 57 0.002 19.1 3.3 10 55-64 3-12 (53)
8 1jei_A Emerin; membrane protei 25.2 49 0.0017 19.8 2.3 28 11-50 17-44 (53)
9 1xu0_A Prion protein, XLPRP; a 17.8 50 0.0017 23.2 1.4 15 21-35 109-123 (130)
10 3tgu_G UQCRQ, mitochondrial ub 16.2 18 0.00062 23.2 -1.1 12 34-45 16-27 (81)
No 1
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=100.00 E-value=1.1e-49 Score=279.13 Aligned_cols=88 Identities=68% Similarity=1.027 Sum_probs=68.8
Q ss_pred CCCCCCCccceeeecCCC-----------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhh
Q 035914 1 MVPKQSNTGLFVGLSKGK-----------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKL 63 (93)
Q Consensus 1 m~~~~~~~g~avGlnkg~-----------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRl 63 (93)
|+|.+|.+|||||||||| +|||++||||||+|||||||||+|+||||++|+|||||||+||||
T Consensus 1 m~~~~~~~~iavGlnKGhkvTk~~~k~r~s~~kg~ltK~tkfVrdiIrEV~GfAPYErR~mELLKvskDKRALKf~KKRl 80 (112)
T 3iz5_k 1 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL 80 (112)
T ss_dssp -----------------------------------CTTTSSCSHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHSSCC
T ss_pred CCCCCCCCCeeeecCCCcccCCCCCCCCcccccCCCcchhHHHHHHHHHHhcCchHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 677777899999999965 899999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCC
Q 035914 64 GAHKRAKMKREEMSNVLRWTRATGG 88 (93)
Q Consensus 64 Gth~RAKrK~eel~~vl~~~Rk~~~ 88 (93)
|||+|||+|+|||+|||++||++++
T Consensus 81 Gth~RAKrKreel~~vl~~~Rka~~ 105 (112)
T 3iz5_k 81 GTHKRAKKKREEMSSVLRKMRSAGG 105 (112)
T ss_dssp SHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999875
No 2
>3izc_k 60S ribosomal protein RPL36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_k 3u5e_i 3u5i_i 4b6a_i
Probab=100.00 E-value=3.3e-48 Score=267.42 Aligned_cols=82 Identities=43% Similarity=0.707 Sum_probs=65.9
Q ss_pred CCCCCCCccceeeecCCC-----------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhh
Q 035914 1 MVPKQSNTGLFVGLSKGK-----------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKL 63 (93)
Q Consensus 1 m~~~~~~~g~avGlnkg~-----------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRl 63 (93)
|++ .+|||||||||| +|||++||||||+|||||||||+|+||||++|+|||||||+||||
T Consensus 1 m~~---~~~iavGlnKGhkvtk~~~k~r~s~~kg~~tK~tkfVrdiIrEV~GfaPYErr~mELLkvskdKrAlKf~KKRl 77 (100)
T 3izc_k 1 MTV---KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRL 77 (100)
T ss_dssp --------------------------CCCCSSCSHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHTSCCSHHHHHHHH
T ss_pred CCC---ccceeeeccCCcccccCCCCCCcccccCCCCchhHHHHHHHHHHhcCchhHHHHHHHHHhcchHHHHHHHHHHh
Confidence 565 489999999966 689999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 035914 64 GAHKRAKMKREEMSNVLRWTRA 85 (93)
Q Consensus 64 Gth~RAKrK~eel~~vl~~~Rk 85 (93)
|||+|||+|+|||+|||++||+
T Consensus 78 Gth~RAKrKreel~~vl~~~Rk 99 (100)
T 3izc_k 78 GSFTRAKAKVEEMNNIIAASRR 99 (100)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999997
No 3
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=100.00 E-value=5.2e-46 Score=257.88 Aligned_cols=79 Identities=44% Similarity=0.710 Sum_probs=75.9
Q ss_pred CccceeeecCCC--------------------CCcchhHHHHHHHHhhccchhhHHHHhhhhccc---hhhHhHHHHHhh
Q 035914 7 NTGLFVGLSKGK--------------------TSKGVDFERNVIREVAGFASYKKGINKLLKVGK---DKRTLKVAKKKL 63 (93)
Q Consensus 7 ~~g~avGlnkg~--------------------~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~sk---dKrALKf~KKRl 63 (93)
++|||||||||| +|||++||||||+|||||||||+|+||||++|+ |||||||+|+||
T Consensus 2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl 81 (104)
T 4a18_Q 2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL 81 (104)
T ss_dssp CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence 478999999976 578999999999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 035914 64 GAHKRAKMKREEMSNVLRWTRA 85 (93)
Q Consensus 64 Gth~RAKrK~eel~~vl~~~Rk 85 (93)
|||+|||+|+|||+|||++||+
T Consensus 82 Gth~RAKrKreel~~vl~~~Rk 103 (104)
T 4a18_Q 82 GTHRRAKVKKALLEEAVRAQRK 103 (104)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999996
No 4
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=51.32 E-value=5 Score=22.54 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.3
Q ss_pred cchhhHHHHhhhh
Q 035914 36 FASYKKGINKLLK 48 (93)
Q Consensus 36 faPYEkr~mELlk 48 (93)
|.|.|.+++||+-
T Consensus 4 Ft~~ElKiI~l~G 16 (34)
T 3qks_C 4 FTEFELKIIDILG 16 (34)
T ss_dssp --CHHHHHHHHC-
T ss_pred ccHHHHHHHHHHc
Confidence 7899999999963
No 5
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=39.58 E-value=21 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=26.8
Q ss_pred HHHHHHHhhccchhhHHHHhhhhccchh-hHhHHHHHhhc
Q 035914 26 ERNVIREVAGFASYKKGINKLLKVGKDK-RTLKVAKKKLG 64 (93)
Q Consensus 26 vr~vIrEV~GfaPYEkr~mELlk~skdK-rALKf~KKRlG 64 (93)
+.+++..+.|+.|.|+.++..|.....- -...=+-+++|
T Consensus 14 ~~~~l~~~~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~ 53 (123)
T 3r0a_A 14 VEDVIKCALNLTKADLNVMKSFLNEPDRWIDTDALSKSLK 53 (123)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC
Confidence 4677888999999999999998755432 23333344454
No 6
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=31.68 E-value=20 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.504 Sum_probs=21.0
Q ss_pred eeeecCCCCCcchhHHHHHHHHhhccchhh
Q 035914 11 FVGLSKGKTSKGVDFERNVIREVAGFASYK 40 (93)
Q Consensus 11 avGlnkg~~tk~~kfvr~vIrEV~GfaPYE 40 (93)
.-||..|..==...+.++-++|.+||.||.
T Consensus 14 vSGlGEG~~y~sl~~Y~~qf~~~LGF~PfP 43 (146)
T 2oyn_A 14 VSGLGEGRYFLSLPPYKEIFKKILGFEPYE 43 (146)
T ss_dssp ECCSSHHHHHTTSHHHHHHHHHHHSSCCCS
T ss_pred EccccceEEEEeCHHHHHHHHHHhCCcCCC
Confidence 345555542112567899999999999996
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=30.64 E-value=57 Score=19.09 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=0.0
Q ss_pred HhHHHHHhhc
Q 035914 55 TLKVAKKKLG 64 (93)
Q Consensus 55 ALKf~KKRlG 64 (93)
|+.|||+-||
T Consensus 3 AlefIk~~LG 12 (53)
T 2yy0_A 3 ALDFLKHHLG 12 (53)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 6778888877
No 8
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=25.15 E-value=49 Score=19.79 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=20.9
Q ss_pred eeeecCCCCCcchhHHHHHHHHhhccchhhHHHHhhhhcc
Q 035914 11 FVGLSKGKTSKGVDFERNVIREVAGFASYKKGINKLLKVG 50 (93)
Q Consensus 11 avGlnkg~~tk~~kfvr~vIrEV~GfaPYEkr~mELlk~s 50 (93)
..|++.|-++..|.. -||+++.+|+...
T Consensus 17 ~~G~~~GPIt~sTRk------------lYeKKL~~l~~~~ 44 (53)
T 1jei_A 17 RYNIPHGPVVGSTRR------------LYEKKIFEYETQR 44 (53)
T ss_dssp SSCCSCCCCCSGGGH------------HHHHHHHHTTTTC
T ss_pred HhCCCCCCCCcccHH------------HHHHHHHHHHHcc
Confidence 467777887777654 4999999987654
No 9
>1xu0_A Prion protein, XLPRP; amphibian, polymorphism, glycoprotein, membrane protein; NMR {Xenopus laevis} SCOP: d.6.1.1
Probab=17.76 E-value=50 Score=23.21 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=13.0
Q ss_pred cchhHHHHHHHHhhc
Q 035914 21 KGVDFERNVIREVAG 35 (93)
Q Consensus 21 k~~kfvr~vIrEV~G 35 (93)
-++++++.||+|+|-
T Consensus 109 l~~rvl~r~i~emC~ 123 (130)
T 1xu0_A 109 LDTTVKSQIIREMCI 123 (130)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478899999999993
No 10
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=16.21 E-value=18 Score=23.20 Aligned_cols=12 Identities=0% Similarity=0.122 Sum_probs=9.6
Q ss_pred hccchhhHHHHh
Q 035914 34 AGFASYKKGINK 45 (93)
Q Consensus 34 ~GfaPYEkr~mE 45 (93)
.+++|||.+++-
T Consensus 16 YsLSP~~Qr~~a 27 (81)
T 3tgu_G 16 YSLSPFEQRAIP 27 (81)
T ss_dssp EEECTTTBCSSC
T ss_pred EEeCcccccccc
Confidence 578999988764
Done!