Query 035914
Match_columns 93
No_of_seqs 106 out of 202
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 12:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035914.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035914hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sfxa_ a.4.5.50 (A:) Hypothet 43.9 10 0.00074 22.5 3.1 16 34-49 16-31 (109)
2 d1g47a1 g.39.1.3 (A:1-35) Pinc 40.9 3 0.00022 22.3 0.2 9 34-42 15-23 (35)
3 d2hzaa1 a.43.1.3 (A:1-48) Nick 23.4 21 0.0015 19.5 1.8 18 17-34 23-40 (48)
4 d2bj7a1 a.43.1.3 (A:1-50) Nick 23.0 18 0.0013 20.0 1.5 16 19-34 27-42 (50)
5 d3ctaa2 b.43.5.2 (A:90-220) CT 21.8 15 0.0011 23.9 1.1 32 10-41 10-41 (131)
6 d2vbua1 b.43.5.2 (A:2-132) CTP 20.6 17 0.0012 23.6 1.2 16 25-40 25-40 (131)
7 d3bqoa1 a.146.1.1 (A:62-265) T 20.0 52 0.0038 22.9 3.8 48 26-81 111-158 (204)
8 d2hkja2 d.14.1.3 (A:307-470) T 19.6 47 0.0034 22.4 3.4 25 53-77 135-159 (164)
9 d1tuaa1 d.51.1.1 (A:1-84) Hypo 18.8 23 0.0017 20.8 1.5 24 22-47 58-82 (84)
10 d1oywa2 c.37.1.19 (A:1-206) Re 16.2 49 0.0035 20.3 2.7 27 25-51 12-41 (206)
No 1
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=43.86 E-value=10 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=14.0
Q ss_pred hccchhhHHHHhhhhc
Q 035914 34 AGFASYKKGINKLLKV 49 (93)
Q Consensus 34 ~GfaPYEkr~mELlk~ 49 (93)
.||.|+|.+++..|-.
T Consensus 16 lGlt~~e~~v~~~L~~ 31 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLLE 31 (109)
T ss_dssp TCCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999887753
No 2
>d1g47a1 g.39.1.3 (A:1-35) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.94 E-value=3 Score=22.26 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=7.4
Q ss_pred hccchhhHH
Q 035914 34 AGFASYKKG 42 (93)
Q Consensus 34 ~GfaPYEkr 42 (93)
.||+|.|+-
T Consensus 15 ~gF~p~Eki 23 (35)
T d1g47a1 15 GGFAPAEKI 23 (35)
T ss_dssp CBCCSTTTC
T ss_pred cCCCchHHh
Confidence 599999973
No 3
>d2hzaa1 a.43.1.3 (A:1-48) Nickel responsive regulator NikR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.38 E-value=21 Score=19.48 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=14.4
Q ss_pred CCCCcchhHHHHHHHHhh
Q 035914 17 GKTSKGVDFERNVIREVA 34 (93)
Q Consensus 17 g~~tk~~kfvr~vIrEV~ 34 (93)
+..+-|+.+|||+||+..
T Consensus 23 ~gy~nRSEaIRdliR~~l 40 (48)
T d2hzaa1 23 RGYNNRSEAIRDILRSAL 40 (48)
T ss_dssp TTCCSHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHH
Confidence 335779999999999863
No 4
>d2bj7a1 a.43.1.3 (A:1-50) Nickel responsive regulator NikR, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.05 E-value=18 Score=19.95 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.4
Q ss_pred CCcchhHHHHHHHHhh
Q 035914 19 TSKGVDFERNVIREVA 34 (93)
Q Consensus 19 ~tk~~kfvr~vIrEV~ 34 (93)
.+.|+.++||+||+..
T Consensus 27 y~nRSEaIRdliR~~l 42 (50)
T d2bj7a1 27 YENRSEAIRDLIRDFI 42 (50)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 5679999999999853
No 5
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.78 E-value=15 Score=23.93 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=15.1
Q ss_pred ceeeecCCCCCcchhHHHHHHHHhhccchhhH
Q 035914 10 LFVGLSKGKTSKGVDFERNVIREVAGFASYKK 41 (93)
Q Consensus 10 ~avGlnkg~~tk~~kfvr~vIrEV~GfaPYEk 41 (93)
+.-||-.|+.==.....++-++|.+||.||.=
T Consensus 10 V~SGLGeG~~y~s~~~Y~~qF~~~LG~~P~PG 41 (131)
T d3ctaa2 10 VTSGMGEGRYYVARKQYIIQFQEKLGIIPYLG 41 (131)
T ss_dssp ECC------------CCHHHHHHHSCSCCCC-
T ss_pred EeccccceeEEEcCHHHHHHHHHHhCCCCCCC
Confidence 34466666521112235788899999999974
No 6
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=20.56 E-value=17 Score=23.62 Aligned_cols=16 Identities=19% Similarity=0.625 Sum_probs=13.9
Q ss_pred HHHHHHHHhhccchhh
Q 035914 25 FERNVIREVAGFASYK 40 (93)
Q Consensus 25 fvr~vIrEV~GfaPYE 40 (93)
..++-++|..||.||.
T Consensus 25 ~Y~~qF~~~LG~~P~P 40 (131)
T d2vbua1 25 PYKEIFKKILGFEPYE 40 (131)
T ss_dssp HHHHHHHHHHSSCCCS
T ss_pred HHHHHHHHHhCCCCCC
Confidence 3688899999999995
No 7
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.02 E-value=52 Score=22.87 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHHHHhhccchhhHHHHhhhhccchhhHhHHHHHhhchhHHHHHHHHHHHHHHH
Q 035914 26 ERNVIREVAGFASYKKGINKLLKVGKDKRTLKVAKKKLGAHKRAKMKREEMSNVLR 81 (93)
Q Consensus 26 vr~vIrEV~GfaPYEkr~mELlk~skdKrALKf~KKRlGth~RAKrK~eel~~vl~ 81 (93)
++++|+|.+ ++=.++.+..+.|-..+++=.|.--.-+..+.+|..|++
T Consensus 111 i~~lik~qA--------V~vCmekg~fk~A~eilkr~f~~~~~~~~lr~~L~~iI~ 158 (204)
T d3bqoa1 111 IQNLIKIQA--------IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 158 (204)
T ss_dssp HHHHHHHHH--------HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 555555543 455567899999999999977766666678888888875
No 8
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=19.64 E-value=47 Score=22.36 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.2
Q ss_pred hhHhHHHHHhhchhHHHHHHHHHHH
Q 035914 53 KRTLKVAKKKLGAHKRAKMKREEMS 77 (93)
Q Consensus 53 KrALKf~KKRlGth~RAKrK~eel~ 77 (93)
++||..+-++|.+|.+-++|.++..
T Consensus 135 rlAl~~~~R~L~~~l~kk~k~~~~~ 159 (164)
T d2hkja2 135 KNALMEVARKLKQYLSEKRKEQEAK 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998887776654
No 9
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=18.83 E-value=23 Score=20.82 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=17.4
Q ss_pred chhHHHHHHHHh-hccchhhHHHHhhh
Q 035914 22 GVDFERNVIREV-AGFASYKKGINKLL 47 (93)
Q Consensus 22 ~~kfvr~vIrEV-~GfaPYEkr~mELl 47 (93)
...-++++|+++ -||+|=. ++.||
T Consensus 58 a~~~a~~iI~aI~rGf~Pe~--a~~ll 82 (84)
T d1tuaa1 58 NLMKAAEVVKAISLGFPPEK--AFRLL 82 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHH--HGGGG
T ss_pred HHHHHHHHHHHHhCCCChHH--HHHhc
Confidence 345689999999 4999953 55555
No 10
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=16.24 E-value=49 Score=20.35 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=20.7
Q ss_pred HHHHHHHHhhcc---chhhHHHHhhhhccc
Q 035914 25 FERNVIREVAGF---ASYKKGINKLLKVGK 51 (93)
Q Consensus 25 fvr~vIrEV~Gf---aPYEkr~mELlk~sk 51 (93)
-+++++++..|| .||-..+++.+-.++
T Consensus 12 ~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~ 41 (206)
T d1oywa2 12 GAKQVLQETFGYQQFRPGQEEIIDTVLSGR 41 (206)
T ss_dssp HHHHHHHHTTCCSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC
Confidence 378999999865 588888888776554
Done!