Query 035916
Match_columns 506
No_of_seqs 168 out of 1376
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 3.1E-81 6.6E-86 673.5 35.0 484 7-506 48-561 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 1.3E-64 2.9E-69 520.9 30.2 426 8-503 33-485 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 8.3E-58 1.8E-62 500.1 41.5 434 10-506 1-652 (654)
4 PRK15462 dipeptide/tripeptide 100.0 1.7E-48 3.8E-53 413.9 39.1 426 6-497 19-469 (493)
5 PRK10207 dipeptide/tripeptide 100.0 6.3E-46 1.4E-50 398.0 39.3 432 6-505 24-476 (489)
6 TIGR00924 yjdL_sub1_fam amino 100.0 4.7E-45 1E-49 390.5 38.3 424 8-505 22-468 (475)
7 PRK09584 tppB putative tripept 100.0 8.1E-43 1.8E-47 375.4 38.1 431 6-504 31-478 (500)
8 PF00854 PTR2: POT family; In 100.0 2.4E-45 5.2E-50 381.0 14.6 357 62-448 1-370 (372)
9 PRK11646 multidrug resistance 99.7 3.8E-15 8.3E-20 156.2 27.6 151 10-179 24-179 (400)
10 PRK10054 putative transporter; 99.7 9.8E-15 2.1E-19 152.8 27.8 151 10-179 21-176 (395)
11 TIGR00893 2A0114 d-galactonate 99.7 2.7E-14 5.8E-19 146.5 30.0 146 16-180 14-164 (399)
12 PF07690 MFS_1: Major Facilita 99.7 9.8E-15 2.1E-19 148.3 22.7 141 21-180 22-167 (352)
13 TIGR00900 2A0121 H+ Antiporter 99.7 1.2E-13 2.6E-18 140.8 30.3 148 18-180 22-174 (365)
14 cd06174 MFS The Major Facilita 99.7 1.1E-13 2.4E-18 139.7 29.2 333 9-502 12-349 (352)
15 PRK12382 putative transporter; 99.7 3.1E-13 6.8E-18 140.7 33.1 347 16-504 36-388 (392)
16 PRK03545 putative arabinose tr 99.6 2.1E-13 4.6E-18 142.1 31.2 141 20-179 33-178 (390)
17 PRK05122 major facilitator sup 99.6 1.8E-13 3.9E-18 142.8 30.7 149 16-175 36-189 (399)
18 TIGR00890 2A0111 Oxalate/Forma 99.6 1.7E-13 3.8E-18 140.1 27.6 147 13-179 20-171 (377)
19 PRK11551 putative 3-hydroxyphe 99.6 2.8E-13 6.1E-18 141.5 29.7 146 15-179 34-184 (406)
20 PRK14995 methyl viologen resis 99.6 3.2E-13 6.9E-18 145.6 29.8 142 20-179 30-176 (495)
21 TIGR00711 efflux_EmrB drug res 99.6 4.5E-13 9.7E-18 143.2 28.6 143 18-179 24-171 (485)
22 TIGR00710 efflux_Bcr_CflA drug 99.6 9.2E-13 2E-17 135.9 29.4 144 20-182 29-177 (385)
23 TIGR00899 2A0120 sugar efflux 99.6 2.2E-12 4.9E-17 132.7 31.2 148 16-180 18-171 (375)
24 PRK09874 drug efflux system pr 99.6 7E-13 1.5E-17 138.3 27.7 141 18-179 37-187 (408)
25 PRK15402 multidrug efflux syst 99.6 2.4E-12 5.1E-17 134.8 30.5 140 21-179 38-182 (406)
26 TIGR00891 2A0112 putative sial 99.6 2E-12 4.3E-17 134.1 29.7 145 15-178 31-182 (405)
27 TIGR00892 2A0113 monocarboxyla 99.6 2.2E-12 4.7E-17 137.7 29.7 340 19-461 42-392 (455)
28 TIGR00895 2A0115 benzoate tran 99.6 3.9E-12 8.4E-17 131.3 30.6 144 16-178 37-185 (398)
29 TIGR00881 2A0104 phosphoglycer 99.6 7.6E-13 1.7E-17 135.4 24.6 145 16-179 15-165 (379)
30 PRK10489 enterobactin exporter 99.6 3.5E-12 7.6E-17 134.1 29.5 160 6-179 24-191 (417)
31 PRK10504 putative transporter; 99.5 9.2E-12 2E-16 133.0 32.4 144 20-182 34-182 (471)
32 PRK09528 lacY galactoside perm 99.5 1E-12 2.2E-17 138.4 24.7 339 15-460 30-374 (420)
33 PRK12307 putative sialic acid 99.5 6.9E-12 1.5E-16 131.9 30.2 140 16-174 38-182 (426)
34 PRK09705 cynX putative cyanate 99.5 1.1E-11 2.3E-16 129.7 31.1 138 18-175 31-174 (393)
35 TIGR00898 2A0119 cation transp 99.5 1.2E-11 2.7E-16 133.2 31.3 139 22-179 115-258 (505)
36 TIGR01299 synapt_SV2 synaptic 99.5 1.5E-11 3.3E-16 137.5 31.7 145 16-179 187-349 (742)
37 TIGR00879 SP MFS transporter, 99.5 8.2E-12 1.8E-16 131.7 28.0 136 28-179 68-211 (481)
38 PRK11663 regulatory protein Uh 99.5 2.5E-11 5.4E-16 128.6 31.3 139 20-177 47-190 (434)
39 TIGR00882 2A0105 oligosacchari 99.5 5.2E-12 1.1E-16 131.9 25.6 150 16-179 23-177 (396)
40 PRK10077 xylE D-xylose transpo 99.5 3E-11 6.6E-16 129.0 31.7 143 26-179 50-209 (479)
41 PRK11195 lysophospholipid tran 99.5 4.9E-11 1.1E-15 124.8 32.5 136 20-177 27-166 (393)
42 TIGR00902 2A0127 phenyl propri 99.5 5.5E-11 1.2E-15 123.7 32.8 340 16-501 25-375 (382)
43 PRK11102 bicyclomycin/multidru 99.5 1.9E-11 4.1E-16 126.2 28.9 139 23-180 18-161 (377)
44 PRK10213 nepI ribonucleoside t 99.5 4E-11 8.6E-16 125.5 31.5 139 21-178 45-188 (394)
45 TIGR00894 2A0114euk Na(+)-depe 99.5 1.7E-11 3.7E-16 130.8 29.0 138 25-179 70-213 (465)
46 TIGR00903 2A0129 major facilit 99.5 3.7E-11 7.9E-16 124.8 30.0 146 12-177 7-157 (368)
47 PRK15011 sugar efflux transpor 99.5 4.6E-11 1E-15 124.8 30.8 146 15-179 35-188 (393)
48 TIGR02332 HpaX 4-hydroxyphenyl 99.5 6.6E-11 1.4E-15 124.6 32.1 145 16-179 28-183 (412)
49 TIGR00883 2A0106 metabolite-pr 99.5 2.1E-11 4.5E-16 125.5 27.4 163 6-179 3-185 (394)
50 PRK11128 putative 3-phenylprop 99.5 7.1E-11 1.5E-15 122.8 31.5 317 16-460 25-351 (382)
51 PRK11652 emrD multidrug resist 99.5 8.3E-11 1.8E-15 122.6 31.5 139 20-177 32-175 (394)
52 PRK10091 MFS transport protein 99.5 7.3E-11 1.6E-15 122.8 30.8 142 19-179 26-172 (382)
53 PRK03633 putative MFS family t 99.5 2.2E-11 4.8E-16 126.6 26.7 125 16-160 27-153 (381)
54 TIGR00792 gph sugar (Glycoside 99.5 5.7E-11 1.2E-15 125.3 29.2 337 16-463 20-379 (437)
55 PRK03699 putative transporter; 99.5 7.9E-11 1.7E-15 123.1 30.0 141 20-179 31-177 (394)
56 TIGR00901 2A0125 AmpG-related 99.5 6.8E-11 1.5E-15 121.4 28.9 146 18-180 10-173 (356)
57 TIGR00896 CynX cyanate transpo 99.5 8.8E-11 1.9E-15 120.6 29.4 150 7-177 10-167 (355)
58 PRK10406 alpha-ketoglutarate t 99.5 1.1E-10 2.5E-15 123.5 31.1 152 15-177 41-211 (432)
59 PRK03893 putative sialic acid 99.4 5.1E-11 1.1E-15 127.9 28.1 141 16-175 40-185 (496)
60 PRK11273 glpT sn-glycerol-3-ph 99.4 2.1E-10 4.6E-15 122.2 32.5 145 18-178 51-201 (452)
61 TIGR00889 2A0110 nucleoside tr 99.4 6.9E-11 1.5E-15 124.8 28.2 95 16-118 23-117 (418)
62 PRK15403 multidrug efflux syst 99.4 5.3E-10 1.2E-14 117.8 33.6 139 22-179 42-185 (413)
63 PRK08633 2-acyl-glycerophospho 99.4 1.5E-10 3.2E-15 136.9 32.4 126 19-160 33-162 (1146)
64 PRK10473 multidrug efflux syst 99.4 2.1E-10 4.6E-15 119.4 29.1 141 21-180 28-173 (392)
65 PRK06814 acylglycerophosphoeth 99.4 1.6E-10 3.5E-15 136.8 30.4 329 32-462 53-394 (1140)
66 PRK11043 putative transporter; 99.4 1.5E-10 3.2E-15 120.9 25.2 139 22-179 32-175 (401)
67 PF05977 MFS_3: Transmembrane 99.4 1.2E-09 2.6E-14 118.1 32.7 341 7-462 18-367 (524)
68 TIGR00712 glpT glycerol-3-phos 99.4 2.2E-10 4.9E-15 121.4 26.6 145 19-179 50-200 (438)
69 PLN00028 nitrate transmembrane 99.4 5.8E-10 1.3E-14 119.8 30.0 145 15-179 55-213 (476)
70 TIGR00897 2A0118 polyol permea 99.4 1.8E-09 3.9E-14 113.2 32.8 137 17-169 35-177 (402)
71 TIGR01301 GPH_sucrose GPH fami 99.4 1.1E-09 2.3E-14 116.9 30.6 379 16-463 25-443 (477)
72 PRK09952 shikimate transporter 99.3 2.2E-09 4.8E-14 113.9 32.8 121 45-176 78-211 (438)
73 PRK10642 proline/glycine betai 99.3 2.8E-09 6.1E-14 114.8 33.0 127 38-175 64-203 (490)
74 TIGR00886 2A0108 nitrite extru 99.3 3.4E-10 7.3E-15 116.2 24.3 134 21-173 27-176 (366)
75 PRK09556 uhpT sugar phosphate 99.3 9E-10 2E-14 117.9 28.3 144 19-176 52-203 (467)
76 PRK10133 L-fucose transporter; 99.3 1.3E-09 2.7E-14 115.9 28.5 125 17-157 47-172 (438)
77 TIGR00887 2A0109 phosphate:H+ 99.3 3.8E-09 8.1E-14 114.2 32.6 149 27-188 52-230 (502)
78 PRK15075 citrate-proton sympor 99.3 1.8E-09 3.9E-14 114.4 28.3 146 16-172 35-199 (434)
79 PRK09848 glucuronide transport 99.3 3.4E-09 7.4E-14 112.7 30.2 120 4-124 5-140 (448)
80 PRK09669 putative symporter Ya 99.3 1.5E-09 3.3E-14 115.3 27.4 164 4-178 6-197 (444)
81 KOG2532 Permease of the major 99.2 8.7E-10 1.9E-14 117.5 22.6 141 24-181 66-212 (466)
82 COG2814 AraJ Arabinose efflux 99.2 2.3E-08 5E-13 103.2 31.8 143 22-183 39-186 (394)
83 TIGR00885 fucP L-fucose:H+ sym 99.2 4.9E-09 1.1E-13 110.5 27.0 128 17-160 24-153 (410)
84 PF13347 MFS_2: MFS/sugar tran 99.2 1.4E-09 3.1E-14 114.9 22.6 336 17-463 23-383 (428)
85 PRK11902 ampG muropeptide tran 99.2 4.9E-08 1.1E-12 102.3 33.2 146 16-179 20-176 (402)
86 PRK11010 ampG muropeptide tran 99.2 4.9E-08 1.1E-12 105.4 31.9 144 18-179 35-189 (491)
87 KOG1330 Sugar transporter/spin 99.2 1.6E-10 3.4E-15 119.3 11.7 141 24-183 61-208 (493)
88 PF03825 Nuc_H_symport: Nucleo 99.2 3.1E-08 6.7E-13 104.0 29.2 99 16-123 23-121 (400)
89 PRK10429 melibiose:sodium symp 99.2 3.2E-08 6.9E-13 106.2 29.9 130 17-157 28-162 (473)
90 KOG0569 Permease of the major 99.1 2E-08 4.3E-13 106.6 26.7 142 33-190 62-212 (485)
91 TIGR00926 2A1704 Peptide:H+ sy 99.1 7E-09 1.5E-13 114.8 22.0 313 26-386 15-344 (654)
92 TIGR00788 fbt folate/biopterin 99.1 2.6E-08 5.6E-13 106.9 25.0 146 17-179 47-203 (468)
93 KOG0254 Predicted transporter 99.0 2.6E-07 5.6E-12 100.3 26.2 164 5-188 52-235 (513)
94 PRK11462 putative transporter; 98.9 1.6E-06 3.4E-11 92.9 31.2 143 4-157 6-165 (460)
95 PF06609 TRI12: Fungal trichot 98.9 9.6E-07 2.1E-11 96.2 27.1 144 16-180 64-212 (599)
96 TIGR02718 sider_RhtX_FptX side 98.9 4.9E-06 1.1E-10 86.7 30.5 149 16-180 22-179 (390)
97 KOG0255 Synaptic vesicle trans 98.9 2.2E-06 4.9E-11 93.0 28.9 137 24-180 111-250 (521)
98 PF01306 LacY_symp: LacY proto 98.9 6.3E-07 1.4E-11 93.5 23.3 337 16-460 28-371 (412)
99 TIGR00805 oat sodium-independe 98.8 1.6E-07 3.5E-12 104.4 17.3 150 21-181 58-277 (633)
100 PRK15034 nitrate/nitrite trans 98.7 1.7E-05 3.7E-10 84.5 30.3 127 16-157 54-182 (462)
101 KOG3764 Vesicular amine transp 98.7 4.2E-08 9.2E-13 99.7 8.4 160 25-202 100-267 (464)
102 PRK05122 major facilitator sup 98.7 3.2E-07 6.9E-12 95.7 14.6 150 16-187 237-391 (399)
103 TIGR00890 2A0111 Oxalate/Forma 98.7 2.8E-07 6.1E-12 94.1 14.0 138 24-178 233-375 (377)
104 PRK03699 putative transporter; 98.6 2.3E-07 5E-12 96.9 12.6 144 16-179 226-374 (394)
105 TIGR00806 rfc RFC reduced fola 98.6 5.1E-07 1.1E-11 95.2 14.1 144 16-179 46-197 (511)
106 COG2271 UhpC Sugar phosphate p 98.6 1.1E-05 2.4E-10 83.2 23.1 147 20-185 53-207 (448)
107 TIGR00880 2_A_01_02 Multidrug 98.6 1.6E-07 3.5E-12 81.4 8.6 123 40-181 7-134 (141)
108 COG0738 FucP Fucose permease [ 98.6 9.1E-07 2E-11 90.5 14.5 127 18-160 35-163 (422)
109 TIGR00899 2A0120 sugar efflux 98.6 9.7E-07 2.1E-11 90.7 14.2 144 18-181 222-370 (375)
110 PRK15011 sugar efflux transpor 98.6 1.5E-06 3.3E-11 90.7 15.7 146 17-182 238-388 (393)
111 KOG2615 Permease of the major 98.5 1E-05 2.2E-10 82.2 20.3 113 28-160 65-179 (451)
112 cd06174 MFS The Major Facilita 98.5 1.3E-06 2.9E-11 87.9 14.4 146 17-181 197-348 (352)
113 KOG2504 Monocarboxylate transp 98.5 8E-05 1.7E-09 80.6 28.1 139 17-175 67-211 (509)
114 PRK09705 cynX putative cyanate 98.5 2.5E-06 5.4E-11 89.2 15.3 152 11-182 220-378 (393)
115 PTZ00207 hypothetical protein; 98.5 2.6E-06 5.7E-11 93.1 15.0 145 14-173 45-193 (591)
116 PRK09874 drug efflux system pr 98.5 2.1E-06 4.6E-11 89.4 13.7 147 18-183 242-396 (408)
117 PRK03545 putative arabinose tr 98.4 5.2E-06 1.1E-10 86.4 15.9 149 16-184 226-379 (390)
118 PRK10489 enterobactin exporter 98.4 3.6E-06 7.7E-11 88.5 14.2 143 18-179 246-393 (417)
119 PRK03633 putative MFS family t 98.4 5.7E-06 1.2E-10 86.0 15.1 139 18-179 223-366 (381)
120 PRK12382 putative transporter; 98.4 4.3E-06 9.4E-11 87.0 13.7 144 18-183 239-387 (392)
121 COG2807 CynX Cyanate permease 98.4 0.00048 1E-08 70.0 27.4 149 15-184 31-185 (395)
122 PRK10642 proline/glycine betai 98.4 8.1E-06 1.8E-10 88.0 16.0 134 10-160 264-401 (490)
123 PRK03893 putative sialic acid 98.4 5.3E-06 1.2E-10 89.1 14.4 141 16-173 296-441 (496)
124 COG2211 MelB Na+/melibiose sym 98.4 0.0005 1.1E-08 72.9 28.4 144 3-157 8-168 (467)
125 TIGR01299 synapt_SV2 synaptic 98.3 3.5E-06 7.7E-11 94.7 12.7 128 35-181 599-730 (742)
126 PRK09952 shikimate transporter 98.3 9.5E-06 2.1E-10 86.2 15.4 158 10-182 264-430 (438)
127 TIGR00893 2A0114 d-galactonate 98.3 8.9E-06 1.9E-10 83.2 14.4 153 16-181 236-395 (399)
128 PRK11551 putative 3-hydroxyphe 98.3 8.9E-06 1.9E-10 84.9 14.5 141 19-179 244-390 (406)
129 TIGR00879 SP MFS transporter, 98.3 1.1E-05 2.3E-10 85.1 14.8 150 20-181 308-466 (481)
130 TIGR00891 2A0112 putative sial 98.3 6.5E-06 1.4E-10 85.2 12.4 136 17-170 260-401 (405)
131 COG2223 NarK Nitrate/nitrite t 98.3 0.00046 1E-08 71.3 24.8 162 8-186 23-194 (417)
132 TIGR00889 2A0110 nucleoside tr 98.3 1.4E-05 3.1E-10 84.4 14.5 136 31-181 251-398 (418)
133 TIGR00883 2A0106 metabolite-pr 98.3 6.3E-06 1.4E-10 84.7 11.4 142 16-173 240-389 (394)
134 PF11700 ATG22: Vacuole efflux 98.2 0.0033 7.3E-08 67.6 32.2 84 403-503 383-466 (477)
135 PRK09528 lacY galactoside perm 98.2 9.8E-06 2.1E-10 85.3 12.7 145 18-181 246-399 (420)
136 PRK09556 uhpT sugar phosphate 98.2 1.9E-05 4.1E-10 84.5 14.4 149 17-182 280-446 (467)
137 TIGR00792 gph sugar (Glycoside 98.2 1.5E-05 3.2E-10 84.0 12.6 127 21-160 248-377 (437)
138 TIGR00892 2A0113 monocarboxyla 98.2 1.3E-05 2.8E-10 85.7 12.1 149 16-183 262-419 (455)
139 PRK10077 xylE D-xylose transpo 98.2 5.6E-05 1.2E-09 80.7 16.4 144 21-179 296-451 (479)
140 COG2814 AraJ Arabinose efflux 98.2 6.4E-05 1.4E-09 77.9 16.1 152 16-188 232-389 (394)
141 PF11700 ATG22: Vacuole efflux 98.1 4.4E-05 9.5E-10 82.0 15.4 156 16-183 302-466 (477)
142 PRK11663 regulatory protein Uh 98.1 2.6E-05 5.6E-10 82.7 13.4 145 18-183 266-422 (434)
143 PRK11010 ampG muropeptide tran 98.1 4.6E-05 9.9E-10 82.3 15.4 150 17-184 244-402 (491)
144 TIGR01272 gluP glucose/galacto 98.1 2.4E-05 5.2E-10 79.3 12.5 135 18-174 163-304 (310)
145 TIGR00897 2A0118 polyol permea 98.1 5.5E-05 1.2E-09 79.2 15.4 154 11-181 237-397 (402)
146 PRK11273 glpT sn-glycerol-3-ph 98.1 3.4E-05 7.4E-10 82.2 13.9 147 17-179 275-429 (452)
147 PRK10091 MFS transport protein 98.1 4.2E-05 9.1E-10 79.5 14.2 144 18-180 222-371 (382)
148 TIGR00902 2A0127 phenyl propri 98.1 8.3E-05 1.8E-09 77.3 15.4 143 16-180 226-374 (382)
149 TIGR00711 efflux_EmrB drug res 98.1 3.3E-05 7.1E-10 82.5 12.6 130 16-160 276-407 (485)
150 PLN00028 nitrate transmembrane 98.1 4.3E-05 9.3E-10 82.2 13.5 148 18-185 275-433 (476)
151 PF03092 BT1: BT1 family; Int 98.1 0.00028 6E-09 75.1 19.3 149 18-179 12-169 (433)
152 PRK15402 multidrug efflux syst 98.0 0.00012 2.6E-09 76.6 15.9 128 18-160 238-367 (406)
153 PRK15075 citrate-proton sympor 98.0 8.6E-05 1.9E-09 78.7 14.7 128 16-160 259-391 (434)
154 TIGR00710 efflux_Bcr_CflA drug 98.0 0.00012 2.7E-09 75.2 15.4 127 19-160 230-358 (385)
155 PRK09848 glucuronide transport 98.0 4.4E-05 9.4E-10 81.2 12.3 131 19-160 252-385 (448)
156 PF13347 MFS_2: MFS/sugar tran 98.0 6.8E-05 1.5E-09 79.3 13.6 134 16-160 246-381 (428)
157 PRK10504 putative transporter; 98.0 0.00012 2.6E-09 78.2 15.4 127 18-160 284-412 (471)
158 PRK10133 L-fucose transporter; 98.0 7.8E-05 1.7E-09 79.3 13.8 141 18-179 281-427 (438)
159 PF03209 PUCC: PUCC protein; 98.0 0.029 6.3E-07 58.3 31.1 332 22-465 6-364 (403)
160 PF05631 DUF791: Protein of un 98.0 0.00024 5.1E-09 72.4 15.6 147 23-184 61-215 (354)
161 COG2271 UhpC Sugar phosphate p 98.0 5.4E-05 1.2E-09 78.2 10.8 161 6-181 259-430 (448)
162 PRK14995 methyl viologen resis 98.0 7.2E-05 1.6E-09 80.8 12.6 129 16-160 280-410 (495)
163 TIGR00895 2A0115 benzoate tran 97.9 6.3E-05 1.4E-09 77.4 11.6 121 20-159 274-396 (398)
164 PF00083 Sugar_tr: Sugar (and 97.9 3.4E-07 7.3E-12 97.1 -6.1 144 30-189 45-198 (451)
165 COG2223 NarK Nitrate/nitrite t 97.9 0.0001 2.2E-09 76.1 11.9 153 16-181 239-397 (417)
166 TIGR02718 sider_RhtX_FptX side 97.9 0.00025 5.4E-09 73.8 15.0 150 17-179 230-385 (390)
167 PRK10406 alpha-ketoglutarate t 97.9 0.00022 4.8E-09 75.5 14.8 153 11-179 258-418 (432)
168 PRK11902 ampG muropeptide tran 97.9 0.00019 4.1E-09 75.1 13.9 143 20-181 234-386 (402)
169 PRK08633 2-acyl-glycerophospho 97.9 0.00016 3.6E-09 85.8 14.9 138 16-172 253-397 (1146)
170 TIGR00900 2A0121 H+ Antiporter 97.9 0.00012 2.5E-09 74.4 11.8 124 19-160 235-360 (365)
171 COG2270 Permeases of the major 97.9 0.012 2.7E-07 61.1 26.2 106 16-126 36-148 (438)
172 KOG4686 Predicted sugar transp 97.9 0.00027 5.9E-09 69.3 13.2 130 16-160 64-195 (459)
173 PRK09669 putative symporter Ya 97.8 0.00022 4.9E-09 75.7 13.7 116 34-160 267-385 (444)
174 PRK10473 multidrug efflux syst 97.8 0.00056 1.2E-08 71.1 16.2 62 20-82 228-289 (392)
175 TIGR00896 CynX cyanate transpo 97.8 0.00019 4.1E-09 73.6 12.2 126 16-160 218-345 (355)
176 COG2270 Permeases of the major 97.8 0.00016 3.4E-09 74.8 11.2 146 19-183 276-427 (438)
177 PRK12307 putative sialic acid 97.8 0.00041 8.9E-09 72.9 14.8 123 18-160 254-380 (426)
178 TIGR02332 HpaX 4-hydroxyphenyl 97.8 0.00016 3.6E-09 76.1 11.6 140 16-174 263-410 (412)
179 PF07690 MFS_1: Major Facilita 97.8 0.00013 2.8E-09 73.8 10.4 124 16-155 227-352 (352)
180 PF05977 MFS_3: Transmembrane 97.8 0.00044 9.6E-09 75.2 15.0 148 16-182 239-391 (524)
181 TIGR00712 glpT glycerol-3-phos 97.8 0.00014 3E-09 77.2 11.0 150 16-182 272-430 (438)
182 PRK11102 bicyclomycin/multidru 97.8 0.00045 9.8E-09 71.1 14.5 122 20-157 219-342 (377)
183 TIGR00882 2A0105 oligosacchari 97.8 0.00026 5.6E-09 73.9 12.7 142 19-179 239-389 (396)
184 PRK10054 putative transporter; 97.8 0.00033 7.1E-09 73.4 13.4 150 25-197 238-392 (395)
185 PRK10213 nepI ribonucleoside t 97.8 0.00064 1.4E-08 71.1 15.6 138 20-177 241-383 (394)
186 PRK11128 putative 3-phenylprop 97.8 0.00052 1.1E-08 71.3 14.8 140 16-177 226-371 (382)
187 KOG3762 Predicted transporter 97.7 0.0035 7.6E-08 66.8 19.7 130 324-503 411-545 (618)
188 TIGR00881 2A0104 phosphoglycer 97.7 0.0002 4.3E-09 73.0 10.4 133 18-166 239-378 (379)
189 PRK15034 nitrate/nitrite trans 97.7 0.00055 1.2E-08 73.0 13.9 102 18-124 275-376 (462)
190 PRK11195 lysophospholipid tran 97.7 0.00076 1.6E-08 70.6 14.8 142 19-179 229-374 (393)
191 TIGR00894 2A0114euk Na(+)-depe 97.7 0.00067 1.5E-08 72.4 14.4 151 16-183 282-448 (465)
192 TIGR00887 2A0109 phosphate:H+ 97.7 0.00049 1.1E-08 74.4 13.5 103 43-160 347-451 (502)
193 PRK10429 melibiose:sodium symp 97.7 0.00047 1E-08 74.0 13.1 124 29-160 264-390 (473)
194 TIGR01272 gluP glucose/galacto 97.6 0.0058 1.3E-07 61.9 20.0 75 91-175 8-103 (310)
195 KOG2533 Permease of the major 97.6 0.025 5.4E-07 61.0 25.4 137 24-179 74-221 (495)
196 PRK11646 multidrug resistance 97.6 0.00067 1.5E-08 71.1 12.7 143 19-180 232-383 (400)
197 TIGR00901 2A0125 AmpG-related 97.6 0.00043 9.4E-09 70.9 10.6 124 10-145 223-351 (356)
198 PRK06814 acylglycerophosphoeth 97.5 0.00081 1.7E-08 80.1 13.5 146 16-172 246-409 (1140)
199 PRK11043 putative transporter; 97.5 0.0029 6.2E-08 66.0 16.1 125 20-160 228-354 (401)
200 KOG4686 Predicted sugar transp 97.5 0.00068 1.5E-08 66.6 10.0 135 20-175 289-432 (459)
201 KOG0252 Inorganic phosphate tr 97.5 0.00065 1.4E-08 70.9 10.5 137 28-174 81-235 (538)
202 KOG2816 Predicted transporter 97.5 0.0065 1.4E-07 64.9 18.4 311 42-466 73-394 (463)
203 TIGR00898 2A0119 cation transp 97.4 0.0019 4.1E-08 69.6 13.7 122 41-179 365-489 (505)
204 PRK11462 putative transporter; 97.4 0.0028 6.1E-08 67.9 14.5 131 18-160 251-384 (460)
205 TIGR00885 fucP L-fucose:H+ sym 97.4 0.0018 3.9E-08 68.3 12.6 140 16-176 253-403 (410)
206 COG2211 MelB Na+/melibiose sym 97.4 0.0023 4.9E-08 67.9 13.1 135 16-160 257-393 (467)
207 PF03209 PUCC: PUCC protein; 97.3 0.0051 1.1E-07 63.8 14.4 152 15-181 219-394 (403)
208 TIGR00886 2A0108 nitrite extru 97.2 0.0014 3.1E-08 66.9 9.3 103 16-123 246-348 (366)
209 KOG2504 Monocarboxylate transp 97.2 0.0012 2.5E-08 71.6 8.8 162 4-185 303-476 (509)
210 PF12832 MFS_1_like: MFS_1 lik 97.2 0.0013 2.8E-08 52.3 6.5 55 16-72 21-75 (77)
211 COG2807 CynX Cyanate permease 97.1 0.0067 1.5E-07 61.8 12.8 125 24-169 236-369 (395)
212 KOG2563 Permease of the major 96.9 0.017 3.7E-07 60.5 13.8 142 7-160 56-199 (480)
213 PF06813 Nodulin-like: Nodulin 96.9 0.036 7.8E-07 54.3 15.5 109 13-124 19-127 (250)
214 KOG1330 Sugar transporter/spin 96.9 0.00096 2.1E-08 69.8 4.3 134 324-504 73-208 (493)
215 KOG2325 Predicted transporter/ 96.8 0.0085 1.8E-07 63.9 11.1 122 20-157 59-184 (488)
216 TIGR00880 2_A_01_02 Multidrug 96.8 0.034 7.3E-07 47.5 12.7 60 402-461 51-110 (141)
217 PRK11652 emrD multidrug resist 96.6 0.043 9.4E-07 56.9 14.8 124 20-160 232-357 (394)
218 COG0477 ProP Permeases of the 96.6 0.039 8.6E-07 53.0 13.6 134 24-173 30-173 (338)
219 TIGR00924 yjdL_sub1_fam amino 96.6 0.019 4.1E-07 61.8 12.0 162 16-187 293-470 (475)
220 KOG0253 Synaptic vesicle trans 96.6 1.1 2.5E-05 46.2 24.3 154 24-199 106-265 (528)
221 KOG1237 H+/oligopeptide sympor 96.6 0.0056 1.2E-07 67.1 7.7 264 35-377 10-276 (571)
222 KOG0569 Permease of the major 96.4 0.072 1.6E-06 57.1 14.8 127 23-160 297-427 (485)
223 KOG3626 Organic anion transpor 96.4 0.091 2E-06 58.6 15.6 150 23-183 124-341 (735)
224 TIGR00903 2A0129 major facilit 96.3 0.052 1.1E-06 56.4 13.1 144 12-179 208-359 (368)
225 KOG3098 Uncharacterized conser 96.3 2 4.3E-05 45.9 26.5 126 323-456 279-406 (461)
226 KOG2532 Permease of the major 96.3 0.034 7.5E-07 59.6 11.5 152 18-184 281-446 (466)
227 PRK15403 multidrug efflux syst 96.2 0.097 2.1E-06 55.1 14.3 139 19-174 242-386 (413)
228 KOG3764 Vesicular amine transp 96.1 0.043 9.4E-07 56.7 10.6 136 322-503 109-245 (464)
229 KOG4332 Predicted sugar transp 95.9 0.06 1.3E-06 52.8 9.9 154 20-183 61-218 (454)
230 PRK10207 dipeptide/tripeptide 95.8 0.054 1.2E-06 58.6 10.5 162 16-188 290-479 (489)
231 KOG0253 Synaptic vesicle trans 95.8 0.075 1.6E-06 54.6 10.6 99 41-158 391-490 (528)
232 TIGR00805 oat sodium-independe 95.8 0.07 1.5E-06 59.6 11.4 61 402-462 172-232 (633)
233 PF03825 Nuc_H_symport: Nucleo 95.7 0.28 6.1E-06 51.6 15.1 154 18-185 230-395 (400)
234 PRK09584 tppB putative tripept 95.5 0.12 2.7E-06 55.9 11.7 141 35-186 320-480 (500)
235 COG0738 FucP Fucose permease [ 95.4 0.14 3.1E-06 53.1 11.0 137 16-173 257-398 (422)
236 TIGR01301 GPH_sucrose GPH fami 94.7 0.84 1.8E-05 49.2 15.0 167 276-460 4-174 (477)
237 PF03137 OATP: Organic Anion T 94.6 0.0081 1.8E-07 65.6 -0.5 151 21-182 28-247 (539)
238 KOG2533 Permease of the major 94.6 0.81 1.8E-05 49.5 14.7 87 402-498 134-220 (495)
239 PF00854 PTR2: POT family; In 94.2 0.022 4.8E-07 59.1 1.8 159 269-446 204-372 (372)
240 TIGR00806 rfc RFC reduced fola 93.6 3.7 8.1E-05 44.1 17.0 59 401-460 114-172 (511)
241 PTZ00207 hypothetical protein; 93.5 0.33 7.3E-06 53.6 9.4 137 22-179 379-546 (591)
242 PF00083 Sugar_tr: Sugar (and 93.5 0.0027 5.8E-08 67.2 -6.9 147 20-179 277-430 (451)
243 TIGR00788 fbt folate/biopterin 92.8 0.83 1.8E-05 49.1 11.1 127 23-160 280-410 (468)
244 PF01770 Folate_carrier: Reduc 92.2 2.4 5.2E-05 44.6 13.0 145 16-180 24-177 (412)
245 PF05978 UNC-93: Ion channel r 91.6 1.8 3.8E-05 39.3 9.9 64 47-120 53-116 (156)
246 PF06779 DUF1228: Protein of u 91.1 1.4 3E-05 35.7 7.7 69 13-82 9-77 (85)
247 PRK03612 spermidine synthase; 89.5 3.4 7.3E-05 45.1 11.6 146 23-182 42-195 (521)
248 KOG2816 Predicted transporter 88.8 2.4 5.3E-05 45.5 9.7 123 19-160 265-389 (463)
249 PF01306 LacY_symp: LacY proto 86.7 7.6 0.00016 41.0 11.7 125 33-176 261-391 (412)
250 KOG0637 Sucrose transporter an 85.8 0.52 1.1E-05 49.8 2.4 134 17-160 54-202 (498)
251 KOG3626 Organic anion transpor 84.8 7.6 0.00016 43.8 11.0 94 404-503 239-341 (735)
252 KOG0254 Predicted transporter 84.7 13 0.00028 40.3 12.9 104 322-455 92-195 (513)
253 KOG2325 Predicted transporter/ 84.3 24 0.00052 38.1 14.2 148 322-499 74-223 (488)
254 KOG0252 Inorganic phosphate tr 83.8 2.9 6.2E-05 44.5 6.8 128 42-183 358-496 (538)
255 PF03137 OATP: Organic Anion T 82.9 0.28 6E-06 53.8 -1.1 56 402-457 141-196 (539)
256 PRK15462 dipeptide/tripeptide 82.1 15 0.00032 39.8 11.8 78 410-503 108-187 (493)
257 PF05978 UNC-93: Ion channel r 79.8 20 0.00043 32.5 10.0 61 401-461 88-148 (156)
258 PF06609 TRI12: Fungal trichot 76.6 64 0.0014 35.9 14.6 118 309-459 70-187 (599)
259 PF06645 SPC12: Microsomal sig 75.4 11 0.00024 29.7 6.2 53 140-192 9-63 (76)
260 PF03092 BT1: BT1 family; Int 71.1 72 0.0016 33.8 13.2 50 409-460 97-146 (433)
261 TIGR00769 AAA ADP/ATP carrier 69.0 1.7E+02 0.0037 31.5 15.8 161 5-177 136-346 (472)
262 KOG3098 Uncharacterized conser 66.5 66 0.0014 34.6 11.5 124 22-157 269-407 (461)
263 KOG2563 Permease of the major 66.4 35 0.00075 36.4 9.2 90 26-120 296-386 (480)
264 KOG3762 Predicted transporter 66.0 8.4 0.00018 41.8 4.7 123 47-186 422-548 (618)
265 PRK07331 cobalt transport prot 64.9 34 0.00074 34.9 8.7 34 402-435 186-220 (322)
266 PF01891 CbiM: Cobalt uptake s 61.5 56 0.0012 30.8 9.1 98 326-433 106-204 (205)
267 KOG2615 Permease of the major 55.7 51 0.0011 34.6 8.0 120 23-160 289-411 (451)
268 PF02487 CLN3: CLN3 protein; 55.5 2.8E+02 0.006 29.3 27.3 61 401-461 334-394 (402)
269 PF14007 YtpI: YtpI-like prote 50.2 29 0.00064 28.3 4.3 49 146-194 35-87 (89)
270 KOG0255 Synaptic vesicle trans 48.2 2.2E+02 0.0049 30.5 12.3 82 400-500 169-250 (521)
271 PF06963 FPN1: Ferroportin1 (F 47.7 90 0.0019 33.3 8.7 104 17-123 280-386 (432)
272 TIGR00769 AAA ADP/ATP carrier 47.5 4E+02 0.0086 28.8 15.9 50 414-463 137-190 (472)
273 KOG3097 Predicted membrane pro 46.4 1.1E+02 0.0023 31.6 8.4 125 15-155 48-178 (390)
274 KOG0637 Sucrose transporter an 45.4 1.2E+02 0.0026 32.6 9.0 161 276-457 32-198 (498)
275 TIGR00939 2a57 Equilibrative N 37.7 3.2E+02 0.007 29.1 11.1 92 401-505 105-196 (437)
276 PRK11909 cobalt transport prot 37.6 2E+02 0.0044 27.7 8.8 37 400-436 181-218 (230)
277 PF06813 Nodulin-like: Nodulin 36.7 2.9E+02 0.0063 27.0 9.8 55 401-456 95-149 (250)
278 PRK08319 cobalt transport prot 36.2 1.7E+02 0.0037 28.1 8.0 32 406-437 183-214 (224)
279 KOG4112 Signal peptidase subun 35.6 1.2E+02 0.0026 24.9 5.5 50 141-190 25-76 (101)
280 KOG3574 Acetyl-CoA transporter 34.6 5.9E+02 0.013 27.1 20.0 69 398-466 364-434 (510)
281 PF03219 TLC: TLC ATP/ADP tran 34.5 6.3E+02 0.014 27.4 14.5 33 28-61 173-205 (491)
282 COG3104 PTR2 Dipeptide/tripept 33.6 3.3E+02 0.0072 29.5 10.2 144 16-173 305-475 (498)
283 TIGR00123 cbiM cobalamin biosy 32.7 1.7E+02 0.0038 27.9 7.3 96 327-435 110-212 (214)
284 PF09527 ATPase_gene1: Putativ 28.0 1.8E+02 0.0039 21.0 5.2 29 41-69 10-38 (55)
285 KOG4255 Uncharacterized conser 27.2 7.2E+02 0.016 25.8 12.6 93 400-503 111-209 (439)
286 COG3202 ATP/ADP translocase [E 26.5 8.6E+02 0.019 26.5 13.3 88 412-505 154-245 (509)
287 PF06800 Sugar_transport: Suga 22.4 7.7E+02 0.017 24.5 12.9 156 18-185 28-186 (269)
288 PF06123 CreD: Inner membrane 21.8 9.9E+02 0.021 25.5 11.2 48 360-426 298-345 (430)
289 KOG2927 Membrane component of 21.1 77 0.0017 32.4 2.7 52 399-460 185-236 (372)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-81 Score=673.49 Aligned_cols=484 Identities=31% Similarity=0.452 Sum_probs=437.4
Q ss_pred hhhhhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc-
Q 035916 7 SDVFVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK- 84 (506)
Q Consensus 7 ~~~fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~- 84 (506)
-||+++||. .||+.|++..++.+..+|+..++.|.|..++.|++||++||.|+|||+||.+++.++.+|..++++++.
T Consensus 48 ~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~ 127 (571)
T KOG1237|consen 48 LERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMI 127 (571)
T ss_pred HHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999995 999999999999999999999999999999999999999999999999999999999999999888766
Q ss_pred ----c-c---------cc--CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH
Q 035916 85 ----P-E---------CI--GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL 148 (506)
Q Consensus 85 ----~-~---------~~--~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i 148 (506)
| . |. +..+...++.++.++++|+|+.|||+.++++||+++.++++++ ++.++|||+|+.+
T Consensus 128 ~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~----~~~~fFnW~yf~~ 203 (571)
T KOG1237|consen 128 PALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVK----GIPSFFNWFYFSQ 203 (571)
T ss_pred hhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhh----CcccchhHHHHHH
Confidence 2 2 22 2346678999999999999999999999999999988888877 7889999999999
Q ss_pred -HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccc
Q 035916 149 -VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASEL 223 (506)
Q Consensus 149 -iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l 223 (506)
.|.+++.++ .|+ .||.++|.++++.|.+++++|+.+++.|++++|.|+|++++.+|++++.+|++.+.+.+.+.+
T Consensus 204 ~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~~ 283 (571)
T KOG1237|consen 204 NGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSLDPEEL 283 (571)
T ss_pred HHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCCcchhc
Confidence 999999999 999 999999999999999999999999999999999999999999999999999988777654333
Q ss_pred cccccCCCCccccCCCCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHH
Q 035916 224 YERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLL 303 (506)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~ 303 (506)
+. ........+++++++++|+|++..+.|.+++...+||+.|+.+||||+|+++|++|+|.+.++||+++.|+.|.++
T Consensus 284 -~~-~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v 361 (571)
T KOG1237|consen 284 -YY-DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTVYAQMVTFFV 361 (571)
T ss_pred -cc-cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHHHHhhhhhee
Confidence 10 0011133345778899999998766555556677999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccc------hhHhHHHHHHHHHHHHHH
Q 035916 304 EQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG------FAMSMILSILCCVTAAIV 377 (506)
Q Consensus 304 ~q~~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~------ig~G~~l~~ls~~~~~~~ 377 (506)
+|+.+||++++.++++|+++++.++.+.+++++|++|++.+|+. ||.+++|++ ||+|+++.+++|.+++.+
T Consensus 362 ~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~---~~~t~~~~~~t~lqrig~G~~~si~sm~~aa~v 438 (571)
T KOG1237|consen 362 LQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFA---RKLTGNPFGITPLQRIGIGLVLSILSMAVAGIV 438 (571)
T ss_pred hhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhh---hhhcCCCCCCChhheeeccchHHHHHHHHHHHH
Confidence 99999999998349999999999999999999999999999999 877776632 999999999999999999
Q ss_pred HHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhh
Q 035916 378 ETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLS 457 (506)
Q Consensus 378 e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l 457 (506)
|.+|++.+.++ ..+.+++|++||+|||+|+|+||+|.+++++||+|+|||++|||+++++|+++.|+|++++..+
T Consensus 439 E~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~L 513 (571)
T KOG1237|consen 439 EAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVL 513 (571)
T ss_pred HHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988751 1245789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccCCcCCCC-CCCCcchhHHHHHHHHHHHHHHHHhhhhhcC
Q 035916 458 VYYAGIISERIGKHNWFQ-DTLNLSRLDNYYWLLAALTAANLAVLIIAAM 506 (506)
Q Consensus 458 ~~~~~~~t~~~~~~~w~~-~~ln~~~l~~~~~lla~l~~v~~~~f~~~a~ 506 (506)
++++++.|.. ..+|++ +|+|++|+|+|||+++.+..+|+..|.+++|
T Consensus 514 v~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~ 561 (571)
T KOG1237|consen 514 VSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAK 561 (571)
T ss_pred HHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEE
Confidence 9999998853 368999 9999999999999999999999999998874
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-64 Score=520.86 Aligned_cols=426 Identities=15% Similarity=0.179 Sum_probs=335.9
Q ss_pred hhhhhhch-hHHHHHHhhhcc----ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccc
Q 035916 8 DVFVAFVF-WMMMDYLTEVWM----ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYD 82 (506)
Q Consensus 8 ~~fs~yg~-~~l~~yl~~~l~----~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~ 82 (506)
|||||||+ +.|+.|++.+++ +++++|..++++|.+++|++|++|||+|||++|+||||++|.+++.+||++|+.+
T Consensus 33 ERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~ 112 (498)
T COG3104 33 ERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS 112 (498)
T ss_pred HHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Confidence 99999996 899999998877 9999999999999999999999999999999999999999999999999999988
Q ss_pred ccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 83 YKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+. .....+++++.++++|+|++|||++++++|||+++|| |||..|+.||+++ +|+++++.+ +++
T Consensus 113 ~~------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp--------rrD~gFt~fY~~iNiGsl~~p~i~~~~ 178 (498)
T COG3104 113 SV------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP--------RRDGGFTLFYMGINIGSLIAPIITGLL 178 (498)
T ss_pred cc------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc--------ccCCCccEEEEEeehHHHHHHHHHHHH
Confidence 41 2356899999999999999999999999999999998 4678999999999 999999999 888
Q ss_pred ---hhhhHHHHHHHHHHHHHHHHHHhcCcceeecC--CCCChhHH---------HHHHHHHHH-hhcccCCCCCCccccc
Q 035916 161 ---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRK--PQGSSLTT---------VVRVFVASI-SKLSYRCPRHASELYE 225 (506)
Q Consensus 161 ---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~--p~g~~l~~---------i~~v~~~a~-~~~~~~~~~~~~~l~~ 225 (506)
+||+.+|.++++.|.+++++|.+++|++.... |+.+|.+. +..++..+. ... +
T Consensus 179 ~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------l-- 246 (498)
T COG3104 179 AINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL----------L-- 246 (498)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH----------H--
Confidence 99999999999999999999999998887553 33333321 111111110 000 0
Q ss_pred cccCCCCccccCCCCcch-hhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHH
Q 035916 226 RSDINDLYVVPHSRGLRW-LDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLE 304 (506)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~-ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~ 304 (506)
..+..++ +....+..+..+. .+... ..+.+ ||+|++++++|+++..++||++|+|++|++..
T Consensus 247 -----------~~~~~~~~~~~~~i~~~~~~~--~~~~~---~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~ 309 (498)
T COG3104 247 -----------NQNTFSGVLLVISILIAIIYF--AEAFR---SPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNL 309 (498)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHH--HHHhc---cCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 0000000 0000000000000 00000 12344 88999999999999999999999999999999
Q ss_pred HHH-HhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc---chhHhHHHHHHHHHHHHHHHHH
Q 035916 305 QAE-VINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV---GFAMSMILSILCCVTAAIVETR 380 (506)
Q Consensus 305 q~~-~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~---~ig~G~~l~~ls~~~~~~~e~~ 380 (506)
|++ +.||+.. |+++||+|+|++||++++++.|+++++|+|+. ++. ++|+ ++++|+++++++++++...+..
T Consensus 310 ~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~---~~~-~~ps~~~KFalGl~l~g~~fl~l~~~~~~ 384 (498)
T COG3104 310 YADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLG---RGN-KQPSTPIKFALGLILAGLGFLILLLAGIW 384 (498)
T ss_pred HHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhh---cCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 996 5577755 69999999999999999999999999999987 443 3444 4999999999999988776543
Q ss_pred HHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhh
Q 035916 381 RLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYY 460 (506)
Q Consensus 381 r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~ 460 (506)
. + ++...+|++|++++|+++++||+|++|+|+|+++++||++|+|++||+|+++.+.|+.+++.+...
T Consensus 385 ~-------~-----~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 385 F-------G-----GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred h-------c-----CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence 1 1 113569999999999999999999999999999999999999999999999999999999987664
Q ss_pred hcccccccCCcCCCCCCCCcchhHHHHHHHHHHHHHHHHhhhh
Q 035916 461 AGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 461 ~~~~t~~~~~~~w~~~~ln~~~l~~~~~lla~l~~v~~~~f~~ 503 (506)
... +. +..+......+|+.++...++..+....
T Consensus 453 ~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 453 TAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred ccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 221 10 1122344456778877777766655443
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=8.3e-58 Score=500.11 Aligned_cols=434 Identities=19% Similarity=0.277 Sum_probs=364.5
Q ss_pred hhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 10 FVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 10 fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
|+|||+ ++|++|+++.+|+++++|+.+++.|.+++|++|++||++||+++||+|++.++.+++.+|++++++++.|...
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 799996 9999999999999999999999999999999999999999999999999999999999999999987664321
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---h--
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---K-- 161 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~-- 161 (506)
........++++.++++|+|++|||+.++++|||++++++ +++++|+|||+++ +|+++++.+ +++ +
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~-------~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~ 153 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLS-------LRSRFFSFFYFAINAGSLISTIITPILRGDVGC 153 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1223455788999999999999999999999999864432 5789999999999 999999988 887 2
Q ss_pred -----hhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCcccc
Q 035916 162 -----SWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVP 236 (506)
Q Consensus 162 -----g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (506)
||+.+|++++++|++++++|..++|+|++++|.++++.++.++++.+.+++......
T Consensus 154 fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~------------------ 215 (654)
T TIGR00926 154 FGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE------------------ 215 (654)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc------------------
Confidence 599999999999999999999999999988899999999999998888765321110
Q ss_pred CCCCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCC
Q 035916 237 HSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGN 316 (506)
Q Consensus 237 ~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~ 316 (506)
+ ...+|+|+++.. ..++++||+|++++++++++..++||.+++|+.|+++.|+++||++++ +
T Consensus 216 ~-~~~~~ld~a~~~----------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~-g 277 (654)
T TIGR00926 216 H-WPLHWLDYAKDK----------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG-G 277 (654)
T ss_pred c-cchhHHHHhccc----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC-C
Confidence 1 114677776421 245689999999999999999999999999999999999999999988 7
Q ss_pred ceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc---chhHhHHHHHHHHHHHHHHHHHHHhh---------
Q 035916 317 FSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV---GFAMSMILSILCCVTAAIVETRRLDV--------- 384 (506)
Q Consensus 317 ~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~---~ig~G~~l~~ls~~~~~~~e~~r~~~--------- 384 (506)
+++|++++|++|+++++++.|+++..++|.+ +|++.+++ ++++|++++++++++++++|.++.+.
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l---~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~ 354 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAI---AKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANE 354 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHH---HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcc
Confidence 9999999999999999999999999999998 66644433 29999999999999999998766310
Q ss_pred ---------------------------------h-------------hh------------------c------------
Q 035916 385 ---------------------------------V-------------RS------------------H------------ 388 (506)
Q Consensus 385 ---------------------------------~-------------~~------------------~------------ 388 (506)
. .. .
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (654)
T TIGR00926 355 IFLQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELE 434 (654)
T ss_pred eEEEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeec
Confidence 0 00 0
Q ss_pred -C----C------C-----------------------------C------------------------------------
Q 035916 389 -G----L------I-----------------------------D------------------------------------ 392 (506)
Q Consensus 389 -g----~------~-----------------------------~------------------------------------ 392 (506)
+ + . +
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (654)
T TIGR00926 435 PKISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANT 514 (654)
T ss_pred CCceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeee
Confidence 0 0 0 0
Q ss_pred -----------------------------CC------------CCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhcc
Q 035916 393 -----------------------------KP------------DEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQF 431 (506)
Q Consensus 393 -----------------------------~~------------~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~a 431 (506)
+. ..++++|++||+|||+++++||++.+++++||.|+||
T Consensus 515 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~ 594 (654)
T TIGR00926 515 CDRIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQA 594 (654)
T ss_pred cccccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhC
Confidence 00 1245588999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhcC
Q 035916 432 PRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAAM 506 (506)
Q Consensus 432 P~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~l~~~~~lla~l~~v~~~~f~~~a~ 506 (506)
|++||+..+++|.++.++|+.++..+... +.. .+...-|.++|.++++..++|.++||
T Consensus 595 p~~mks~~~a~~~~~~~~g~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~f~~~a~ 652 (654)
T TIGR00926 595 PPNMKSVLQALWLLTVAIGNLIVVVIAEF-ENF----------------SVQAAEFFLFASLMLVVMAIFSILAY 652 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcC----------------hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998765332 111 12244678889999999999998875
No 4
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=1.7e-48 Score=413.90 Aligned_cols=426 Identities=12% Similarity=0.053 Sum_probs=318.0
Q ss_pred hhhhhhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc
Q 035916 6 WSDVFVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK 84 (506)
Q Consensus 6 ~~~~fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~ 84 (506)
+-|||+||++ ..+..|+++++|+++.+++.+.+.+....++++++||+++||++||||++++|.++..+|++++....
T Consensus 19 ~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~- 97 (493)
T PRK15462 19 IWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE- 97 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh-
Confidence 4589999996 78999999999999999999999999999999999999999988999999999999999998776431
Q ss_pred ccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--
Q 035916 85 PECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-- 160 (506)
Q Consensus 85 ~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-- 160 (506)
.....+++++.++++|.|..+||.+++++|+|+++|+ +|++.|+++|+.+ +|+++++.+ +++
T Consensus 98 ------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~--------~R~sgf~i~Y~~~nlG~~iap~l~g~L~~ 163 (493)
T PRK15462 98 ------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP--------RRDGGFSLMYAAGNVGSIIAPIACGYAQE 163 (493)
T ss_pred ------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc--------cccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence 1123466778888899999999999999999977664 4568899999999 999999999 888
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCC-CCChhHH--HHHHH-----HH-----HHhhcccCCCCCCcccccc
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKP-QGSSLTT--VVRVF-----VA-----SISKLSYRCPRHASELYER 226 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p-~g~~l~~--i~~v~-----~~-----a~~~~~~~~~~~~~~l~~~ 226 (506)
+||+.+|.++++.|+++++++..++|.+.+..+ +.+|.++ ..+.. .. ...... + +
T Consensus 164 ~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~- 232 (493)
T PRK15462 164 EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVL---------F-W- 232 (493)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHH---------H-H-
Confidence 899999999999999999999888877654311 1122211 00000 00 000000 0 0
Q ss_pred ccCCCCccccCCCCcchh-hhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHH
Q 035916 227 SDINDLYVVPHSRGLRWL-DKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQ 305 (506)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l-d~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q 305 (506)
+ +....+ -...+.. ... .. +-..+..+.||+|++..++++++..++||+.|+|++|+.+..
T Consensus 233 ----------~-~~~~~~~~~~~~~~-~~~----~~--~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lf 294 (493)
T PRK15462 233 ----------K-EWSVYALIVATIIG-LGV----LA--KIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLY 294 (493)
T ss_pred ----------H-HHHHHHHHHHHHHH-HHH----HH--HHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 0 000000 0000000 000 00 000011234779999999999999999999999999998888
Q ss_pred HH-HhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccc---cchhHhHHHHHHHHHHHHHHHHHH
Q 035916 306 AE-VINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHV---VGFAMSMILSILCCVTAAIVETRR 381 (506)
Q Consensus 306 ~~-~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~---~~ig~G~~l~~ls~~~~~~~e~~r 381 (506)
++ ++|++++ |+++|++|+|++||++|+++.|++..+|.++. ||. ++| .++++|+++++++++++.+....
T Consensus 295 a~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~---~~~-~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~- 368 (493)
T PRK15462 295 IDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESV---AGN-RTVRIWGKFALGLGLMSAGFCILTLSARW- 368 (493)
T ss_pred HHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHh---cCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 74 7999998 89999999999999999999999999998775 332 233 34999999999999988776422
Q ss_pred HhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHh-HHHHHHHhhhhhh
Q 035916 382 LDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATM-GVGIIGSTLSVYY 460 (506)
Q Consensus 382 ~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~-aiG~~l~~~l~~~ 460 (506)
..+ ...+|++|++..|+++|+||++.+|.|++++.+.||++++|++||+|+++. ++|+.+++.+.+.
T Consensus 369 ---~~~---------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~ 436 (493)
T PRK15462 369 ---SAM---------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQ 436 (493)
T ss_pred ---cCC---------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 125899999999999999999999999999999999999999999999965 8999999998777
Q ss_pred hcccccccCCcCCCCCCCCcchhHHHHHHHHHHHHHH
Q 035916 461 AGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAAN 497 (506)
Q Consensus 461 ~~~~t~~~~~~~w~~~~ln~~~l~~~~~lla~l~~v~ 497 (506)
+..-+. ++=-..+-+...+..+|..++..+++.
T Consensus 437 ~~~~~~----~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 437 TSQASF----DASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred hccccC----CccccccchhhhHHHHHHHHHHHHHHH
Confidence 643110 000000001224455667777666555
No 5
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=6.3e-46 Score=398.03 Aligned_cols=432 Identities=12% Similarity=0.086 Sum_probs=324.0
Q ss_pred hhhhhhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc
Q 035916 6 WSDVFVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK 84 (506)
Q Consensus 6 ~~~~fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~ 84 (506)
..|||+||++ +++..|+++++|+++++++.+++.+....|+++++||+++||++||||++.+|.+++.+|++++.++..
T Consensus 24 ~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~ 103 (489)
T PRK10207 24 LWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLL 103 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3499999995 899999999999999999999999999999999999999999999999999999999999999887632
Q ss_pred ccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--
Q 035916 85 PECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-- 160 (506)
Q Consensus 85 ~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-- 160 (506)
....+++++.++++|.|+++||..++++|||+++++ ++++.|+++|+++ +|+++++.+ +++
T Consensus 104 -------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~--------~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 104 -------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP--------RLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred -------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch--------hhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123466889999999999999999999999977553 3467899999999 999999999 888
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCChhH--HHHHHH------HHHHhhcccCCCCCCccccccccC
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLSGSSSYRRR--KPQGSSLT--TVVRVF------VASISKLSYRCPRHASELYERSDI 229 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~--~p~g~~l~--~i~~v~------~~a~~~~~~~~~~~~~~l~~~~~~ 229 (506)
.||+++|.++++.+.++++.+..+++.+++. +|+++|.. ...... ...... . .++
T Consensus 169 ~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~-~---~~~---------- 234 (489)
T PRK10207 169 KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAW-L---MHN---------- 234 (489)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHH-H---Hhh----------
Confidence 9999999999999998888888887776553 23333331 111100 001000 0 000
Q ss_pred CCCccccCCCCcch-hhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHH-
Q 035916 230 NDLYVVPHSRGLRW-LDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAE- 307 (506)
Q Consensus 230 ~~~~~~~~~~~~~~-ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~- 307 (506)
. +.... +......... .. .++..+.++ +++++.+..+++++..++||.+++|+.+++.+|++
T Consensus 235 -------~-~~~~~~~~~~~~i~~~-----~f--~~~~~~~~~-~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~ 298 (489)
T PRK10207 235 -------V-EVANLVLIVLSIVVTI-----IF--FREAFKLDK-TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAIN 298 (489)
T ss_pred -------h-hHHHHHHHHHHHHHHH-----HH--HHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 00000 0000000000 00 000011223 44666777888899999999999999999888887
Q ss_pred HhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc---chhHhHHHHHHHHHHHHHHHHHHHhh
Q 035916 308 VINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV---GFAMSMILSILCCVTAAIVETRRLDV 384 (506)
Q Consensus 308 ~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~---~ig~G~~l~~ls~~~~~~~e~~r~~~ 384 (506)
++|++.. |+++||+++|++||++++++.|+.++++.++- |++.+++ ++++|+++++++++++++.+...
T Consensus 299 ~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~----~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~--- 370 (489)
T PRK10207 299 NVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLG----SKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF--- 370 (489)
T ss_pred hcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHh----hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---
Confidence 5788776 79999999999999999999999998775553 3333333 39999999999998877665321
Q ss_pred hhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhccc
Q 035916 385 VRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGII 464 (506)
Q Consensus 385 ~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~ 464 (506)
... ..++|++|++++|++.|+||.+.+|+++|++++++|++++|.+||+|+++.++|+.+|+.+.+.++.
T Consensus 371 ~~~---------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~- 440 (489)
T PRK10207 371 ADA---------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAV- 440 (489)
T ss_pred cCC---------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 111 1247899999999999999999999999999999999999999999999999999999988776542
Q ss_pred ccccCCcCCCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhc
Q 035916 465 SERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAA 505 (506)
Q Consensus 465 t~~~~~~~w~~~~ln~~~l~~~~~lla~l~~v~~~~f~~~a 505 (506)
+. +...|.. .++.+..+|..+++.+++..+++.++.
T Consensus 441 ~~----~~~~~~~-~~~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 441 PD----NITDPLE-TLPVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred cc----ccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111110 123457788888888888777776654
No 6
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=4.7e-45 Score=390.47 Aligned_cols=424 Identities=11% Similarity=0.036 Sum_probs=319.8
Q ss_pred hhhhhhc-hhHHHHHHhhh--ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc
Q 035916 8 DVFVAFV-FWMMMDYLTEV--WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK 84 (506)
Q Consensus 8 ~~fs~yg-~~~l~~yl~~~--l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~ 84 (506)
||++||+ ++++..|++++ +|+++.+++.+++.+....++++++||+++||++||||++.++..++.+|+++++++.
T Consensus 22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~- 100 (475)
T TIGR00924 22 ERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI- 100 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc-
Confidence 8999999 59999999988 9999999999999999999999999999999988999999999999999999888763
Q ss_pred ccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--
Q 035916 85 PECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-- 160 (506)
Q Consensus 85 ~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-- 160 (506)
+...+++++.+.++|.|+++|+.+++++|++++++++ +|++.|+++|++. +|+++|+.+ +++
T Consensus 101 -------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~-------~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 101 -------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP-------RRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred -------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc-------cccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999999776532 3457899999999 999999999 888
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHH-----H--HHH----HHHHhhcccCCCCCCcccccccc
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTV-----V--RVF----VASISKLSYRCPRHASELYERSD 228 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i-----~--~v~----~~a~~~~~~~~~~~~~~l~~~~~ 228 (506)
+||+.+|.++++.++++.+++...++.+++.++++++.++. . +.+ ....+.... ..+. +.
T Consensus 167 ~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~--- 238 (475)
T TIGR00924 167 NYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHV----VI--- 238 (475)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-Hhcc----HH---
Confidence 79999999999988888888888887776554433332110 0 000 000110000 0000 00
Q ss_pred CCCCccccCCCCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHH-HHH
Q 035916 229 INDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLE-QAE 307 (506)
Q Consensus 229 ~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~-q~~ 307 (506)
........+.++...... ...+| +.+++| +++..++++++++.++||++|+|+.+++.. |++
T Consensus 239 --------~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~-~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~ 301 (475)
T TIGR00924 239 --------ANILLMTVTLAVIIFFFR----LAFKP----RLDAVA-RNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADN 301 (475)
T ss_pred --------HHHHHHHHHHHHHHHHHH----HHHhc----cCCHHH-HhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 000000000111100000 00111 123333 445567899999999999999999998765 456
Q ss_pred HhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc---chhHhHHHHHHHHHHHHHHHHHHHhh
Q 035916 308 VINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV---GFAMSMILSILCCVTAAIVETRRLDV 384 (506)
Q Consensus 308 ~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~---~ig~G~~l~~ls~~~~~~~e~~r~~~ 384 (506)
++|++++ ++++|+++++++|++++++++|++++++.++- || +++++ +|++|+++.+++++.++++.. .
T Consensus 302 ~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~---~~-~~~~~~~~k~~~G~~l~~~~~~~~~~~~~----~ 372 (475)
T TIGR00924 302 NMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLG---RK-GKDPTTPLKFTLGMLFCGASFLTFAASIW----F 372 (475)
T ss_pred hcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHH---hC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHh----h
Confidence 7999988 89999999999999999999999998876665 43 23333 389999999999998887631 1
Q ss_pred hhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhccc
Q 035916 385 VRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGII 464 (506)
Q Consensus 385 ~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~ 464 (506)
++ +..++|++|++++|++.|+||++.+|++.|++++++|+++||.++|+|.+..++|+.+++.+.......
T Consensus 373 ~~---------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 373 AD---------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred cC---------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11 123689999999999999999999999999999999999999999999999999999999887654321
Q ss_pred ccccCCcCCCCCCCCcchhHHHHHHHHHHHHHHHHhhhhhc
Q 035916 465 SERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIAA 505 (506)
Q Consensus 465 t~~~~~~~w~~~~ln~~~l~~~~~lla~l~~v~~~~f~~~a 505 (506)
.+ ...+|..++++.++..+++++..
T Consensus 444 ------~~----------~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 444 ------QG----------VTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred ------cc----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 23466777777777776665543
No 7
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=8.1e-43 Score=375.42 Aligned_cols=431 Identities=12% Similarity=0.083 Sum_probs=319.5
Q ss_pred hhhhhhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc
Q 035916 6 WSDVFVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK 84 (506)
Q Consensus 6 ~~~~fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~ 84 (506)
.-||++||++ +.+..|+++++|++.++++.+.+.+....+..++++|+++||++|||+++.++..+..+|+.+++++.
T Consensus 31 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~- 109 (500)
T PRK09584 31 LWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG- 109 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4589999995 88999999999999999999999999999999999999999977999999999999999998887753
Q ss_pred ccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--
Q 035916 85 PECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-- 160 (506)
Q Consensus 85 ~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-- 160 (506)
.....+++++.+.++|.|.++|+..++++|+|+++++ ++++.++++|+++ +|+++++.+ +++
T Consensus 110 ------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~--------~~~~~~~~~~~~~~iG~~~gp~i~g~l~~ 175 (500)
T PRK09584 110 ------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP--------RLDGAFTMYYMSINIGSFFSMLATPWLAA 175 (500)
T ss_pred ------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch--------hhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245667888999999999999999999999976443 3456899999999 999999999 888
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcceeec--CCCCChhHH------HHHHHHHHH-hhcccCCCCCCccccccccCC
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLSGSSSYRRR--KPQGSSLTT------VVRVFVASI-SKLSYRCPRHASELYERSDIN 230 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~--~p~g~~l~~------i~~v~~~a~-~~~~~~~~~~~~~l~~~~~~~ 230 (506)
.||+.+|.++++.+.++++.++..++.++++ +|+++|... ...+..... .....+.++ .
T Consensus 176 ~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------- 244 (500)
T PRK09584 176 KYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE----I------- 244 (500)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch----H-------
Confidence 8999999999999999888887766655443 233333221 111111111 110000000 0
Q ss_pred CCccccCCCCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHH-Hh
Q 035916 231 DLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAE-VI 309 (506)
Q Consensus 231 ~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~-~~ 309 (506)
.+ ..+-..++..... . ..+.+..++ +|+|+++..+++++..++||++|+|+++.+.+|+. ++
T Consensus 245 -------~~--~~~~~~~~~~~~~-----~--~~~~~~~~~-~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~ 307 (500)
T PRK09584 245 -------AR--MALGVVALGIVVI-----F--GKEAFAMKG-AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNV 307 (500)
T ss_pred -------HH--HHHHHHHHHHHHH-----H--HHHHhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 00 0000000000000 0 000012233 45666677788999999999999999999999986 47
Q ss_pred cCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 035916 310 NGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHG 389 (506)
Q Consensus 310 d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g 389 (506)
|+++. ++.+|++++|++|++.++++.|+.++++.++. +|.+ .+.++++|++++++++++++..+.. +++
T Consensus 308 ~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~---~r~~-~~~~~~~G~~l~~l~f~~l~~~~~~----~~~-- 376 (500)
T PRK09584 308 EHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMG---DRLP-MPHKFAIGMVLCSGAFLVLPLGAKF----AND-- 376 (500)
T ss_pred ccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhC---cCCC-cHHHHHHHHHHHHHHHHHHHHHHHh----cCC--
Confidence 87777 79999999999999999999999999887665 5532 3334999999999999988765421 111
Q ss_pred CCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccC
Q 035916 390 LIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIG 469 (506)
Q Consensus 390 ~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~ 469 (506)
...+|++|++++|+++|+||++++|.++|++++++|+++||++||+|+++.++|+.+++.+.+.+.. +..
T Consensus 377 -------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~-~~~-- 446 (500)
T PRK09584 377 -------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAV-PDN-- 446 (500)
T ss_pred -------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc--
Confidence 2369999999999999999999999999999999999999999999999999999999988765431 100
Q ss_pred CcCCCCCCC-CcchhHHHHHHHHHHHHHHHHhhhhh
Q 035916 470 KHNWFQDTL-NLSRLDNYYWLLAALTAANLAVLIIA 504 (506)
Q Consensus 470 ~~~w~~~~l-n~~~l~~~~~lla~l~~v~~~~f~~~ 504 (506)
..|.. ..+.+..+|..+++++++..+++.+.
T Consensus 447 ----~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 447 ----VTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred ----cccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 11235677788887777665555443
No 8
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=2.4e-45 Score=380.99 Aligned_cols=357 Identities=27% Similarity=0.345 Sum_probs=251.3
Q ss_pred hHHHHHHHHHHHhhhhhhccccccccc-CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhH
Q 035916 62 YWMILVSSFAYTAVIKFLFYDYKPECI-GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLII 140 (506)
Q Consensus 62 ~~ti~~~~~~~~iG~~~l~~~~~~~~~-~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~ 140 (506)
||||++|.+++.+|++++++++.|... ++.+.+.+++||.++++|+|++|||++++++|||++++++ +++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~-------~~~~~ 73 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS-------RRDSF 73 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT-------HHHHH
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh-------hhhhh
Confidence 799999999999999999999887543 3445678999999999999999999999999999987533 57899
Q ss_pred HHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeec-CCCCChhHH-HHHHHHHHHhhcc
Q 035916 141 FSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRR-KPQGSSLTT-VVRVFVASISKLS 213 (506)
Q Consensus 141 f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~-~p~g~~l~~-i~~v~~~a~~~~~ 213 (506)
|+||||++ +|++++... +|+ +||+++|++++++|++++++|+.++++|+++ +|.++++.+ ...+...+.+++.
T Consensus 74 F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (372)
T PF00854_consen 74 FNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRK 153 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhh
Confidence 99999999 999999999 999 9999999999999999999999999999988 678888887 4445556666655
Q ss_pred cCCCCCCccccccccCCCCccccCCCCcchhhhhhhhcCcccccccccCccc-ccccchhhhhhhhhhhhhHHHHhHHHH
Q 035916 214 YRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWR-LCSVTEVEETKCLVHLIPICFTFIIPG 292 (506)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~-~~~~~~ve~~k~l~~ll~l~~~~~~f~ 292 (506)
...+.....+++......... ..+.....+.+....+. ...|. .++++++|+.|.+.+.+|.+...++|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~ 224 (372)
T PF00854_consen 154 LAVPKGSSWLDWALFQYSERS--IFGIIVFIRAAVIFFPE-------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYW 224 (372)
T ss_dssp CCH-HHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHCCC-------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHH
T ss_pred cccccchHHHHHhhhhhhhhh--hhhhhhhccchhhhhhh-------hhhcccCCccceeeeeeeeeeccccCeEEEEee
Confidence 443321111111000000000 00001111111111111 11111 156788999999999999999999999
Q ss_pred HhhcccchhHHHHHHHhcCCCCCC-ceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc---chhHhHHHHH
Q 035916 293 VVSSIGNTFLLEQAEVINGKDGGN-FSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV---GFAMSMILSI 368 (506)
Q Consensus 293 ~~~~Q~~t~~~~q~~~~d~~~g~~-~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~---~ig~G~~l~~ 368 (506)
..+.|..+....|.+++|+.++ + +++|++++|++|++++++++|++|++++|+. |+ +++++ ++++|++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~---~~-~~~~~~~~k~~~G~~~~~ 299 (372)
T PF00854_consen 225 QMYSQLNTFFLLQVPQMDRGIG-GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLL---RR-GIQPSPPQKFGIGMVFAI 299 (372)
T ss_dssp HHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTT---TT-------HHHHHHH-HHHH
T ss_pred ehhhhhhhHHHHhccccccccc-cccccccchhhhHHHHHHHHHHHHHHHHHhHHh---hh-cccchhhhhhhHHHHHHH
Confidence 9999999999999999999988 6 9999999999999999999999999999999 52 23333 3999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhH
Q 035916 369 LCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMG 448 (506)
Q Consensus 369 ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~a 448 (506)
+++++++.+|.+|...+++++ ..+.+|++|+|++++++|++.++++.|.+++.+|+++++.+||+|+...+
T Consensus 300 ~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~~~ 370 (372)
T PF00854_consen 300 LAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFALSA 370 (372)
T ss_dssp HHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHHH-
T ss_pred HHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHHhc
Confidence 999999999998876655443 46669999999999999999999999977777777777777777776654
No 9
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.71 E-value=3.8e-15 Score=156.18 Aligned_cols=151 Identities=11% Similarity=0.030 Sum_probs=126.0
Q ss_pred hhhhc-hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 10 FVAFV-FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 10 fs~yg-~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
++++. .+.+..|+++++|++..+.+.+.+.......+..+++|.++|| +|||+++..+..+..++.+.+....
T Consensus 24 ~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~----- 97 (400)
T PRK11646 24 LGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAH----- 97 (400)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhc-----
Confidence 34444 4677789999999999999999999999999999999999999 7999999999999999888776542
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhh
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWK 164 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~ 164 (506)
+.+.+++.+.+.+++.|...|...+.+.|..++ + ++.+..++.+... +|..+|+.+ +++ .||+
T Consensus 98 ---~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~-------~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~ 164 (400)
T PRK11646 98 ---EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP---H-------QRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFR 164 (400)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456677888899999999999999999877643 2 3457899999999 999999998 777 8999
Q ss_pred HHHHHHHHHHHHHHH
Q 035916 165 IKFGILAMFTTVSTL 179 (506)
Q Consensus 165 ~~F~i~~~~~~~~~~ 179 (506)
..|.+.++..++..+
T Consensus 165 ~~f~~~~~~~~~~~i 179 (400)
T PRK11646 165 LVCATGAVLFVLAAA 179 (400)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988776655544
No 10
>PRK10054 putative transporter; Provisional
Probab=99.69 E-value=9.8e-15 Score=152.82 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=121.9
Q ss_pred hhhhc-hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 10 FVAFV-FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 10 fs~yg-~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
++++. .+.+..|+++++|++..+.+.+.+.+.....+..++.|+++|| +|||+++.++.....++.+++....
T Consensus 21 ~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~----- 94 (395)
T PRK10054 21 IGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVN----- 94 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHh-----
Confidence 34444 3667889999999999999999999988888999999999999 7999999999998888887776652
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhh
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWK 164 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~ 164 (506)
+.+.+++...+.+.+.+...|+..+...|..+++ ++.+.+++.+... +|..+++.+ +++ .||+
T Consensus 95 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~ 161 (395)
T PRK10054 95 ---NVTLVVLFFALINCAYSVFSTVLKAWFADNLSST----------SKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSIN 161 (395)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455555666677777778888888888876432 2457899999999 999999999 776 7899
Q ss_pred HHHHHHHHHHHHHHH
Q 035916 165 IKFGILAMFTTVSTL 179 (506)
Q Consensus 165 ~~F~i~~~~~~~~~~ 179 (506)
..|.+.++..+++.+
T Consensus 162 ~~f~~~~~~~~i~~i 176 (395)
T PRK10054 162 LPFWLAAICSAFPLV 176 (395)
T ss_pred cHHHHHHHHHHHHHH
Confidence 999988877766644
No 11
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.69 E-value=2.7e-14 Score=146.48 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=123.3
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+....++.+++|.+..+.+.+.+.+.....++.++.|+++|| +|||+++..+..+..++.+++..+. +.+.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 84 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAG--------AYVS 84 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHc--------CHHH
Confidence 444556788999999999999999999999999999999999 7999999999999999888877652 4677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+++++.+.++|.|...|...++..|.+++ + +|.+.++++.... +|.++++.+ +++ .+|+..|.+.
T Consensus 85 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~-------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 85 LYILRVLLGAAEAPFFPGIILIVASWFPA---S-------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhCCH---H-------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 88899999999999999999999987743 2 2457789989889 999999988 665 8999999987
Q ss_pred HHHHHHHHHH
Q 035916 171 AMFTTVSTLV 180 (506)
Q Consensus 171 ~~~~~~~~~~ 180 (506)
++..++..+.
T Consensus 155 ~~~~~~~~~~ 164 (399)
T TIGR00893 155 GVLGIIWGVL 164 (399)
T ss_pred HHHHHHHHHH
Confidence 7765554443
No 12
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.66 E-value=9.8e-15 Score=148.26 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=121.8
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
++.+++|.+..+.+.+.+.+.....++.++.|+++|| +||||++..+..+..++..++.++. +.+.+.++.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 92 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFAS--------NFWLLLIAR 92 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhh--------hHHHHhhhc
Confidence 7888999999999999999999999999999999999 7999999999999999955555431 345788999
Q ss_pred HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTT 175 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~ 175 (506)
.+.++|.+...|...+++.|.++++ +|.+.+++...+. +|.++++.+ +++ .||+..|.+.++..+
T Consensus 93 ~l~g~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 93 FLLGIGSGFFSPASNALIADWFPPE----------ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTC----------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhh----------hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 9999999999999999999988662 2457789999999 999999999 777 799999999988888
Q ss_pred HHHHH
Q 035916 176 VSTLV 180 (506)
Q Consensus 176 ~~~~~ 180 (506)
++.++
T Consensus 163 ~~~il 167 (352)
T PF07690_consen 163 IAAIL 167 (352)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 77664
No 13
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.66 E-value=1.2e-13 Score=140.76 Aligned_cols=148 Identities=12% Similarity=-0.026 Sum_probs=119.9
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|. .+++.+..+.+.+.+.+.....++.++.|+++|| +||||++..+..+..++.+++...... ...+.+.++
T Consensus 22 ~~~~~-~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 96 (365)
T TIGR00900 22 LPLYV-LAGTGSASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALL---GGLNIWQVY 96 (365)
T ss_pred HHHHH-HHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHc---CCCcHHHHH
Confidence 33455 4589999999999999999999999999999999 799999999999888877766654211 012567788
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
+++.+.+++.+...|...++..|.++++ +|.+.++++..+. +|.++++.+ +++ .||+..|.+.++
T Consensus 97 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 166 (365)
T TIGR00900 97 VLAGILAIAQAFFTPAYQAMLPDLVPEE----------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV 166 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHH----------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999999999999999988542 2457899999999 999999998 666 899999988777
Q ss_pred HHHHHHHH
Q 035916 173 FTTVSTLV 180 (506)
Q Consensus 173 ~~~~~~~~ 180 (506)
..+++.+.
T Consensus 167 ~~~~~~~~ 174 (365)
T TIGR00900 167 GFAISALL 174 (365)
T ss_pred HHHHHHHH
Confidence 66555443
No 14
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.66 E-value=1.1e-13 Score=139.73 Aligned_cols=333 Identities=17% Similarity=0.085 Sum_probs=223.9
Q ss_pred hhhhhchhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 9 VFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 9 ~fs~yg~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
.++++........+.+++|.+..+.+.+.+.......++.++.|+++|| +||||++..+..+..++.+.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~------ 84 (352)
T cd06174 12 GLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFA------ 84 (352)
T ss_pred HHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHh------
Confidence 3444444333344446789999999999999999999999999999999 799999999999999998887765
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhh
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSW 163 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~ 163 (506)
.+.+.++++..+.+++.+...+...++..|.++++ +|...+++.+... +|..+++.+ +.+ .+|
T Consensus 85 --~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 152 (352)
T cd06174 85 --SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK----------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGW 152 (352)
T ss_pred --ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc----------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 24577888999999999999999999999988552 2457789999999 999999998 666 679
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcch
Q 035916 164 KIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRW 243 (506)
Q Consensus 164 ~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 243 (506)
+..|.+.++..+++.+...... ++.........
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~---------------------------------- 185 (352)
T cd06174 153 RWLFLILAILGLLLALLLLFLL-------------RLLLLLALAFF---------------------------------- 185 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH----------------------------------
Confidence 9999988877766655433211 00000000000
Q ss_pred hhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhh
Q 035916 244 LDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLL 323 (506)
Q Consensus 244 ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~ 323 (506)
.....+ ..+.+....+..+. . +.. +...+.
T Consensus 186 ------------------------------------------~~~~~~-~~~~~~~~~~~~~~--~--~~~---~~~~~~ 215 (352)
T cd06174 186 ------------------------------------------LLSFGY-YGLLTYLPLYLQEV--L--GLS---AAEAGL 215 (352)
T ss_pred ------------------------------------------HHHhHH-HHHHHHHHHHHHHh--c--CCC---HHHHHH
Confidence 000000 00000000111100 0 111 111234
Q ss_pred hhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHH
Q 035916 324 LLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLF 403 (506)
Q Consensus 324 l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~ 403 (506)
+...+.+..++..++..++. +|.+++.+.+..+.++..++.+..... -+.+
T Consensus 216 ~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------------~~~~ 266 (352)
T cd06174 216 LLSLFGLGGILGALLGGLLS-------DRLGRRRLLLLIGLLLAALGLLLLALA----------------------PSLA 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHh----------------------ccHH
Confidence 45556666666666666654 333222202566666666665544322 1255
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcchh
Q 035916 404 WLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRL 483 (506)
Q Consensus 404 wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~l 483 (506)
+.+...++.++++....+.....+.+..|++.|+..+|++.....+|..+++.+.....+. .+ .
T Consensus 267 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~------~~----------~ 330 (352)
T cd06174 267 LLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT------GG----------Y 330 (352)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cC----------c
Confidence 6777889999999999999999999999999999999999999999999998886654320 11 2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 035916 484 DNYYWLLAALTAANLAVLI 502 (506)
Q Consensus 484 ~~~~~lla~l~~v~~~~f~ 502 (506)
...|.+.+++.++..+.+.
T Consensus 331 ~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 GGVFLILAALALLAALLLL 349 (352)
T ss_pred chHHHHHHHHHHHHHHHhe
Confidence 3455666777777666554
No 15
>PRK12382 putative transporter; Provisional
Probab=99.65 E-value=3.1e-13 Score=140.70 Aligned_cols=347 Identities=8% Similarity=-0.056 Sum_probs=205.6
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+.+++|.|.++.+.+.+++.....++.++.|+++|| +||||.+..+.+...++.+...+..........+...
T Consensus 36 p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (392)
T PRK12382 36 PVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFAL 114 (392)
T ss_pred hhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHH
Confidence 445568888999999999999999999999999999999999 7999999999887776543322211100000124567
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+++++.+.++|.+...|...+.+.|.+++ + +|.+..+++..+. .|..+++.+ +++ .||+..+.+.
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~---~-------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 115 LVVGRLILGFGESQLLTGALTWGLGLVGP---K-------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCc---c-------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 78889999999999888888888887643 2 2446788888888 999999888 666 7888776655
Q ss_pred HHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhhh
Q 035916 171 AMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAII 250 (506)
Q Consensus 171 ~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~ 250 (506)
.+..++... ..++ .|+.++ ++ ++ +. +..+.
T Consensus 185 ~~~~~~~~~---~~~~-----~~~~~~------------~~------~~-----------------~~---~~~~~---- 214 (392)
T PRK12382 185 MVLPLLAWA---FNGT-----VRKVPA------------HA------GE-----------------RP---SLWSV---- 214 (392)
T ss_pred HHHHHHHHH---HHHh-----ccCCCC------------Cc------cc-----------------Cc---hHHHH----
Confidence 443322221 1111 111000 00 00 00 00000
Q ss_pred cCcccccccccCcccccccchhhhhhhhhh-hhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhH
Q 035916 251 LPNKTLRQQERNRWRLCSVTEVEETKCLVH-LIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYY 329 (506)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~-ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~ 329 (506)
.|.+.+ .+.++.....+..... ....+. + |.+ ++ +.........
T Consensus 215 ------------------------~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-~----~~~----~~-~~~~~~~~~~ 259 (392)
T PRK12382 215 ------------------------VGLIWKPGLGLALQGVGFAVIGT-FVSLYF-A----SKG----WA-MAGFTLTAFG 259 (392)
T ss_pred ------------------------HHHHHHhHHHHHHHHHHHhHHHH-HHHHHH-H----hcC----Cc-hhHHHHHHHH
Confidence 000000 0001111111111100 000111 1 111 11 1122223344
Q ss_pred HHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHH
Q 035916 330 ISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQF 409 (506)
Q Consensus 330 i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y 409 (506)
+..++..|+..++. +|.+++ +.+..+..+.+++++..... -+.++.+...
T Consensus 260 ~~~~~~~~~~g~l~-------~r~g~~-~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~ 309 (392)
T PRK12382 260 GAFVLMRVLFGWMP-------DRFGGV-KVAIVSLLVETVGLLLLWLA----------------------PTAWVALAGA 309 (392)
T ss_pred HHHHHHHHHHHHHH-------HhcCCC-eehHHHHHHHHHHHHHHHHc----------------------ccHHHHHHHH
Confidence 44445556555554 443321 22556666666655433221 1234455667
Q ss_pred HHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcchhHHHHHH
Q 035916 410 LLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWL 489 (506)
Q Consensus 410 ~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~l~~~~~l 489 (506)
++.++++....+.......+++|++.|+..+|++.....+|+.+++.+.....+.. +| ...|.+
T Consensus 310 ~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g~----------~~~~~~ 373 (392)
T PRK12382 310 ALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------GY----------PSVFLA 373 (392)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------Cc----------hHHHHH
Confidence 88899998888888888889999999999999999999999999887766543211 22 345667
Q ss_pred HHHHHHHHHHhhhhh
Q 035916 490 LAALTAANLAVLIIA 504 (506)
Q Consensus 490 la~l~~v~~~~f~~~ 504 (506)
.+++.++..+..+..
T Consensus 374 ~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 374 GAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777776665543
No 16
>PRK03545 putative arabinose transporter; Provisional
Probab=99.65 E-value=2.1e-13 Score=142.10 Aligned_cols=141 Identities=11% Similarity=0.105 Sum_probs=117.6
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+.+++|.+.++.+.+.+.+.....++.++.|+++|| +||||.+..+..+..++.+....+ .+.+.++++
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 103 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALA--------WNFTVLLIS 103 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHH
Confidence 45667899999999999999998888888889999999 799999999999999998777665 246778888
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
+.+.+++.+...|...+++.|.++++ +|.+..+++.... +|..+++.+ +.+ .||+..|.+.++..
T Consensus 104 r~~~G~~~~~~~~~~~~~i~~~~~~~----------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~ 173 (390)
T PRK03545 104 RIGIAFAHAIFWSITASLAIRVAPAG----------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGA 173 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChh----------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHH
Confidence 89999999999999999999887532 2457788888888 999999988 665 79999999887765
Q ss_pred HHHHH
Q 035916 175 TVSTL 179 (506)
Q Consensus 175 ~~~~~ 179 (506)
++..+
T Consensus 174 ~l~~~ 178 (390)
T PRK03545 174 LITLL 178 (390)
T ss_pred HHHHH
Confidence 55443
No 17
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.65 E-value=1.8e-13 Score=142.76 Aligned_cols=149 Identities=8% Similarity=-0.022 Sum_probs=115.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+.+++|.|..+.+.+.+.+.....++.++.|+++|| +||||++..+..++.++.+.+.++.........+...
T Consensus 36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (399)
T PRK05122 36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLL 114 (399)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHH
Confidence 455678888999999999999999999999999999999999 7999999999998888766555432110000013456
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+++.+.+.++|.+...++..+...|.+++++ |.+..+++..+. +|..+++.+ +++ .||+..|.+.
T Consensus 115 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~----------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 115 LLLGRLLLGIGESLAGTGSILWGIGRVGALH----------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHhhHHhhcchHHHHHHhhcChhh----------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7788899999999999999999988774322 345678877788 888888888 665 7899888776
Q ss_pred HHHHH
Q 035916 171 AMFTT 175 (506)
Q Consensus 171 ~~~~~ 175 (506)
++..+
T Consensus 185 ~~~~~ 189 (399)
T PRK05122 185 MLLAL 189 (399)
T ss_pred HHHHH
Confidence 55443
No 18
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.63 E-value=1.7e-13 Score=140.10 Aligned_cols=147 Identities=9% Similarity=0.043 Sum_probs=118.6
Q ss_pred hchhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCch
Q 035916 13 FVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 13 yg~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
|..+.+..++.+++|.+.++.+.+.+.+.....++.++.|+++|| +|||+++..+..+..+|.++...+. +
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~--------~ 90 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIAD--------S 90 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHH--------H
Confidence 345667788999999999999999999999999999999999999 7999999999999999988777662 5
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKF 167 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F 167 (506)
.+.+++++.+.++|.|...+...+...+.++ + +|....+++.... +|.+++..+ ..+ .||+..|
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f 159 (377)
T TIGR00890 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFP----D-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAF 159 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC----c-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHH
Confidence 6777888889999999877777777766553 2 2346788888888 998765444 443 7899999
Q ss_pred HHHHHHHHHHHH
Q 035916 168 GILAMFTTVSTL 179 (506)
Q Consensus 168 ~i~~~~~~~~~~ 179 (506)
.+.++..++..+
T Consensus 160 ~~~~~~~~~~~~ 171 (377)
T TIGR00890 160 IYMGIIFLLVIV 171 (377)
T ss_pred HHHHHHHHHHHH
Confidence 987776655544
No 19
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.63 E-value=2.8e-13 Score=141.52 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=120.0
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
.......+.+++|.++.+.+.+.+.+.....+++++.|+++|| +||||++..+..+..++.+++.... +..
T Consensus 34 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~ 104 (406)
T PRK11551 34 AGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAW--------DFP 104 (406)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhc--------cHH
Confidence 3444456678899999999999999999999999999999999 7999999999998888877666552 456
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
.+.+...+.+++.|...|...+++.|.++++ +|.+..++++... +|.++++.+ ..+ .+|+..|.+
T Consensus 105 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 174 (406)
T PRK11551 105 SLLVARLLTGVGLGGALPNLIALTSEAVGPR----------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYV 174 (406)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 7788889999999999999999999887432 3457789999999 999999888 555 789999988
Q ss_pred HHHHHHHHHH
Q 035916 170 LAMFTTVSTL 179 (506)
Q Consensus 170 ~~~~~~~~~~ 179 (506)
.++..++..+
T Consensus 175 ~~~~~~~~~~ 184 (406)
T PRK11551 175 GGVGPLLLVP 184 (406)
T ss_pred HHHHHHHHHH
Confidence 7765554443
No 20
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.62 E-value=3.2e-13 Score=145.64 Aligned_cols=142 Identities=13% Similarity=0.026 Sum_probs=119.8
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+.+++|.+..+.+++.+.|......+.+++|+++|| +|||+++..+..++.+|.++...+. +.+.+.++
T Consensus 30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~--------~~~~li~~ 100 (495)
T PRK14995 30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSP--------TASWLIAT 100 (495)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHH
Confidence 34557899999999999999999988899999999999 7999999999999999998877762 56788899
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
+.+.++|.|+..|...+.+.+.+.++ + +|.+.++++.... +|..+|+.+ +++ .||++.|.+.....
T Consensus 101 r~l~G~g~~~~~~~~~~~l~~~~~~~--~-------~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~ 171 (495)
T PRK14995 101 RALLAIGAAMIVPATLAGIRATFTEE--K-------QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIV 171 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 99999999999998888887766332 2 3557899999999 999999999 777 89999999876655
Q ss_pred HHHHH
Q 035916 175 TVSTL 179 (506)
Q Consensus 175 ~~~~~ 179 (506)
++.++
T Consensus 172 ~~~~~ 176 (495)
T PRK14995 172 LVVMG 176 (495)
T ss_pred HHHHH
Confidence 55444
No 21
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.60 E-value=4.5e-13 Score=143.16 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=121.6
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
....+.+++|.+..+.+.+.+.+.....++.++.|+++|| +|||+.+..+..+..++.++...+. +...+.
T Consensus 24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~l~ 94 (485)
T TIGR00711 24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAP--------NLELMI 94 (485)
T ss_pred HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcC--------CHHHHH
Confidence 3456678899999999999999999999999999999999 7999999999999999988877652 467788
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
+++.+.++|.|...|...+++.|.+++ + +|.+.+++++... +|..+++.+ +++ .||+..|.+.+.
T Consensus 95 ~~~~~~G~~~~~~~~~~~~~i~~~~~~---~-------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~ 164 (485)
T TIGR00711 95 IFRVIQGFGGGPLIPLSFSTLLNIYPP---E-------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVP 164 (485)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHCCH---H-------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhH
Confidence 899999999999999999999988843 2 2457788999999 999999998 777 899999988766
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
..++..+
T Consensus 165 ~~~~~~~ 171 (485)
T TIGR00711 165 IGIIVVV 171 (485)
T ss_pred HHHHHHH
Confidence 5544444
No 22
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.60 E-value=9.2e-13 Score=135.90 Aligned_cols=144 Identities=14% Similarity=0.070 Sum_probs=120.2
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+.+++|.+..+.+.+.+.+.....++.++.|+++|| +||||++..+..+..++.+++.... +.+.++++
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 99 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSN--------NIETLLVL 99 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHc--------cHHHHHHH
Confidence 44567899999999999999999999999999999999 7999999999999999888776652 45677888
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
+.+.++|.+...+...+++.|.++++ +|.+.+++++... +|..+++.+ +++ .||+..|.+.++..
T Consensus 100 ~~l~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 169 (385)
T TIGR00710 100 RFVQAFGASAGSVISQALVRDIYPGE----------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAG 169 (385)
T ss_pred HHHHHcchhHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 99999999999999999999877432 3457789999888 999999988 766 78999998877766
Q ss_pred HHHHHHHH
Q 035916 175 TVSTLVFL 182 (506)
Q Consensus 175 ~~~~~~f~ 182 (506)
++..+...
T Consensus 170 ~~~~~~~~ 177 (385)
T TIGR00710 170 ILLSALIF 177 (385)
T ss_pred HHHHHHHH
Confidence 55554433
No 23
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.59 E-value=2.2e-12 Score=132.67 Aligned_cols=148 Identities=7% Similarity=-0.014 Sum_probs=106.6
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHH-HHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILV-SSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~-~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
+.+..|+.+++|.+.++.+.+.+.+.....+..++.|.++|| +||||.++. +..+..++.++...+ .+.+
T Consensus 18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 88 (375)
T TIGR00899 18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWN--------RNYF 88 (375)
T ss_pred hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhc--------chHH
Confidence 667789999999999999999999998888888999999999 799887655 445555555555544 2345
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
.+++...+.+.+.+...|...++..|..++++ | .+....++..... +|..+++.+ +++ .||+..|.+
T Consensus 89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~ 160 (375)
T TIGR00899 89 LLLVLGVLLSSFASTANPQLFALAREHADRTG----R----EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLT 160 (375)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----h----hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHH
Confidence 55666666666666777777777766542211 1 1112356667777 899999888 666 799999999
Q ss_pred HHHHHHHHHHH
Q 035916 170 LAMFTTVSTLV 180 (506)
Q Consensus 170 ~~~~~~~~~~~ 180 (506)
.++..++..+.
T Consensus 161 ~~~~~~~~~~~ 171 (375)
T TIGR00899 161 AALAFVLCGVL 171 (375)
T ss_pred HHHHHHHHHHH
Confidence 88776655443
No 24
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.59 E-value=7e-13 Score=138.28 Aligned_cols=141 Identities=13% Similarity=0.025 Sum_probs=107.1
Q ss_pred HHHHHhhhccChhHH-----HHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCch
Q 035916 18 MMDYLTEVWMISFVH-----AAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 18 l~~yl~~~l~~~~~~-----a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
+..|+ +++|.+..+ ++.+.+.+.....++.++.|+++|| +|||+.+..+..+..++.+++... .+
T Consensus 37 l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~--------~~ 106 (408)
T PRK09874 37 LPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLA--------QN 106 (408)
T ss_pred HHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHH--------hh
Confidence 33444 458887654 3777888888888899999999999 799999999999988887776654 24
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKF 167 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F 167 (506)
.+.+++...+.+++.+ ..|...+...|++++ + ++.+..+++.... +|.++++.+ +++ .+|+..|
T Consensus 107 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 175 (408)
T PRK09874 107 IWQFLILRALLGLLGG-FVPNANALIATQVPR---N-------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVF 175 (408)
T ss_pred HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH---h-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 5677788888888765 457777777776632 1 2446778888888 999999988 766 7899999
Q ss_pred HHHHHHHHHHHH
Q 035916 168 GILAMFTTVSTL 179 (506)
Q Consensus 168 ~i~~~~~~~~~~ 179 (506)
.+.++..++..+
T Consensus 176 ~~~~~~~~~~~~ 187 (408)
T PRK09874 176 FITASVLFLCFL 187 (408)
T ss_pred HHHHHHHHHHHH
Confidence 988777665544
No 25
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.58 E-value=2.4e-12 Score=134.84 Aligned_cols=140 Identities=11% Similarity=0.046 Sum_probs=113.8
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
.+.+++|.+..+.+...+.+.....++.++.|.++|| +||||.+.++..+..++.++...+. +.+.+++..
T Consensus 38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~~~ 108 (406)
T PRK15402 38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQ--------SIEQFTLLR 108 (406)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHc--------cHHHHHHHH
Confidence 3557899999999999999999999999999999999 7999999999999888877766542 456677888
Q ss_pred HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTT 175 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~ 175 (506)
.+.+++.+...|...+.+.|.+++++ +.+..++.+... +|..+++.+ +++ .||+..|.+.++..+
T Consensus 109 ~l~G~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~ 178 (406)
T PRK15402 109 FLQGIGLCFIGAVGYAAIQESFEEAD----------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAA 178 (406)
T ss_pred HHHHhHhhhHHHHHHHHHHHHhChhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 89999999888888899988874422 335567777777 888889888 666 799999988777766
Q ss_pred HHHH
Q 035916 176 VSTL 179 (506)
Q Consensus 176 ~~~~ 179 (506)
++.+
T Consensus 179 ~~~~ 182 (406)
T PRK15402 179 LSFF 182 (406)
T ss_pred HHHH
Confidence 5554
No 26
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.58 E-value=2e-12 Score=134.07 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=119.8
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
.+.....+.+++|.+.++.+.+.+.+.....++.++.|+++|| +|||+++.++..+..++.++.... .+.+
T Consensus 31 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~--------~~~~ 101 (405)
T TIGR00891 31 VALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFA--------PGYI 101 (405)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHh--------ccHH
Confidence 3445567778999999999999999999999999999999999 799999999999999988777665 2456
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh--hhHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS--WKIKF 167 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g--~~~~F 167 (506)
.+++++.+.++|.|...+...+++.|.++++ +|.+..+++.... +|..+++.+ +.+ .+ |+..|
T Consensus 102 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f 171 (405)
T TIGR00891 102 TMFIARLVIGIGMGGEYGSSAAYVIESWPKH----------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALF 171 (405)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHhCChh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 7788899999999999999999999887442 2457788988888 999999888 555 44 99999
Q ss_pred HHHHHHHHHHH
Q 035916 168 GILAMFTTVST 178 (506)
Q Consensus 168 ~i~~~~~~~~~ 178 (506)
.+.++..++.+
T Consensus 172 ~~~~~~~~~~~ 182 (405)
T TIGR00891 172 FISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHHH
Confidence 88665554443
No 27
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.57 E-value=2.2e-12 Score=137.71 Aligned_cols=340 Identities=11% Similarity=-0.004 Sum_probs=195.9
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
...+.+++|.+.++++.+.+.+.....++.+++|+++|| +|||++++.+..+..++.+++..+. +...++.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~ 112 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSS--------NVIELYL 112 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhh--------hHHHHHH
Confidence 345557899999999999999998888999999999999 7999999999998888887766652 3344444
Q ss_pred H-HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 99 A-LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 99 ~-l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
. .++.++|.|..-+...+.+.|.++ + +|.+...+.+.+. +|..+++.+ +++ .||+..|.+.++
T Consensus 113 ~~~~l~G~~~~~~~~~~~~~~~~~~~----~-------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~ 181 (455)
T TIGR00892 113 TAGFITGLGLAFNFQPSLTMLGKYFY----R-------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGG 181 (455)
T ss_pred HHHHHHHhcchhhhhHHHHHHHHHHH----h-------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 3 467788888765555566676552 2 2457788999999 999998888 666 899999999888
Q ss_pred HHHHHHHHHHhcCcceeecCCC--CChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhhh
Q 035916 173 FTTVSTLVFLSGSSSYRRRKPQ--GSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAII 250 (506)
Q Consensus 173 ~~~~~~~~f~~~~~~~~~~~p~--g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~ 250 (506)
..+++.+...+.++. ++. .++. +.....+.+. . ..+.... ...+
T Consensus 182 ~~~~~~v~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~------------~---~~~~~~~-~~~~-- 227 (455)
T TIGR00892 182 LLLHCCVCGALMRPV----GPSQRVSKS------------KSKEGLPPDG------------S---TKKLSKK-STAE-- 227 (455)
T ss_pred HHHHHHHHHHHhCCC----Ccccccccc------------cccccCCCCC------------c---ccccccc-chhh--
Confidence 766655433332221 110 0000 0000000000 0 0000000 0000
Q ss_pred cCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhHH
Q 035916 251 LPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYI 330 (506)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~i 330 (506)
+..++ ...+-..+ |.+. ............+.+..+...... .|.+.. .-..+.+..+..+
T Consensus 228 ---------~~~~~--~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~l~~~~--~~~g~s---~~~~g~~~~~~~~ 287 (455)
T TIGR00892 228 ---------KINRF--LDFSLFTH-RGFL---VYLSGNVIMFLGFFAPIIFLVPYA--KDKGVD---EYEAAFLLSIIGF 287 (455)
T ss_pred ---------hhhhh--cchHHhcC-chHH---HHHHHHHHHHHHccchHHHHHHHH--HHcCCC---HHHHHHHHHHHHH
Confidence 00000 00000001 1111 111222222233333222222221 122221 1112334455555
Q ss_pred HHhHhhhhhhhhhhccccccccccccccc---hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHH
Q 035916 331 SKGRFTAFYEGFVGHLTSVGWNAVAHVVG---FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLP 407 (506)
Q Consensus 331 ~iivl~Pl~~~~~~pl~~~~~r~~~~~~~---ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~ 407 (506)
..++..|+...+. +|...++++ ++.++++.+++.+..... -+.++++.
T Consensus 288 ~~~~~~~~~g~l~-------d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~~~~i 338 (455)
T TIGR00892 288 VDIFARPSCGLIA-------GLKWIRPHVQYLFSFALLFNGLTHLLCALA----------------------GDYTGLVI 338 (455)
T ss_pred HHHHHHHHHHHHh-------cccccCHHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHH
Confidence 5566666655544 221112221 444444444433322111 13455566
Q ss_pred HHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhh
Q 035916 408 QFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYA 461 (506)
Q Consensus 408 ~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~ 461 (506)
..++.|++.....+.....+.+..|++.++..+|++.....+|+.+++.+...+
T Consensus 339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l 392 (455)
T TIGR00892 339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL 392 (455)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence 678889999888999999999999999999999999999999999998876543
No 28
>TIGR00895 2A0115 benzoate transport.
Probab=99.57 E-value=3.9e-12 Score=131.26 Aligned_cols=144 Identities=11% Similarity=0.076 Sum_probs=118.5
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
.....++.+++|.+..+++.+.+.+.....++.+++|+++|| +|||+++..+..+..++.+++.... +.+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 107 (398)
T TIGR00895 37 GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALAT--------NVTQ 107 (398)
T ss_pred HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHcc--------chHH
Confidence 334556678899999999999999999999999999999999 7999999999999888887776552 4567
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+.++..+.++|.|...|...++++|.++++ +|.+.++++..+. +|..+++.+ +++ .||+..|.+.
T Consensus 108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 108 LLILRFLAGLGLGGLMPNLNALVSEYAPKR----------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHcCHH----------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 788889999999999999999999987432 2346788888888 999999988 776 7999999887
Q ss_pred HHHHHHHH
Q 035916 171 AMFTTVST 178 (506)
Q Consensus 171 ~~~~~~~~ 178 (506)
++...+..
T Consensus 178 ~~~~~~~~ 185 (398)
T TIGR00895 178 GIAPLLLL 185 (398)
T ss_pred hhHHHHHH
Confidence 64444333
No 29
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.56 E-value=7.6e-13 Score=135.43 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=120.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+....++.+++|.+..+.+.+.+.+.....++.+++|+++|| +|||+++.++..+..++.+++..+. +.+.
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 85 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFST--------SLWV 85 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhh--------hHHH
Confidence 445678889999999999999999999999999999999999 7999999999999999988877662 4577
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHH-HH-HHH---hhhhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSI-AF-LFI---KSWKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~-~~-~~i---~g~~~~F~i 169 (506)
+++++.+.+++.|...|...++..|.+++++ |.+.+++...+. +|..+++ .+ ..+ .+|+..|.+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSE----------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhh----------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 8889999999999999999999999885422 335577777888 9998888 44 444 789999988
Q ss_pred HHHHHHHHHH
Q 035916 170 LAMFTTVSTL 179 (506)
Q Consensus 170 ~~~~~~~~~~ 179 (506)
.++..++..+
T Consensus 156 ~~~~~~~~~~ 165 (379)
T TIGR00881 156 PGIIAIIVSL 165 (379)
T ss_pred HHHHHHHHHH
Confidence 7766555443
No 30
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.56 E-value=3.5e-12 Score=134.10 Aligned_cols=160 Identities=13% Similarity=-0.017 Sum_probs=117.2
Q ss_pred hhhhhhhhch---hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccc
Q 035916 6 WSDVFVAFVF---WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYD 82 (506)
Q Consensus 6 ~~~~fs~yg~---~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~ 82 (506)
++..++.++. ......+.++++.+..+++.+.+.+.....++.++.|+++|| +|||+.+..+..+..++.+.+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~ 102 (417)
T PRK10489 24 IARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALN 102 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHH
Confidence 3444555552 222334456788899999999999999999999999999999 799999998888877776654431
Q ss_pred ccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 83 YKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.... ..+.+.+.+..++.+++.|...|...+.+.|..+++ ++.+..++.+... +|..+|+.+ +++
T Consensus 103 ~~~~---~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~l~g~l 169 (417)
T PRK10489 103 AFLP---EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE----------NLMQAGAITMLTVRLGSVISPALGGLL 169 (417)
T ss_pred HHcC---CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH----------HHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence 1000 123456667778888888888888888888776432 2346678888888 999999998 666
Q ss_pred ---hhhhHHHHHHHHHHHHHHH
Q 035916 161 ---KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 161 ---~g~~~~F~i~~~~~~~~~~ 179 (506)
.||++.|.+.++..+++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~ 191 (417)
T PRK10489 170 IAAGGVAWNYGLAAAGTFITLL 191 (417)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 6899999887776665544
No 31
>PRK10504 putative transporter; Provisional
Probab=99.55 E-value=9.2e-12 Score=132.98 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=116.4
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+.+++|.+..+.+.+.+.+.....++.++.|+++|| +||||.+..+..+..++.++...+ .+...+.++
T Consensus 34 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 104 (471)
T PRK10504 34 PSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALS--------GTLNELLLA 104 (471)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHh--------CCHHHHHHH
Confidence 33446799999999999999988888899999999999 799999999988888887765554 245667888
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
+.+.++|.|...|...+.+.|.+++ + ++...+.+..... +|..+++.+ +++ .||+..|.+.....
T Consensus 105 ~~l~g~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~ 174 (471)
T PRK10504 105 RVLQGVGGAMMVPVGRLTVMKIVPR---E-------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVG 174 (471)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCH---H-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999999999999999999987632 1 2346788888888 999999998 776 89999999877665
Q ss_pred HHHHHHHH
Q 035916 175 TVSTLVFL 182 (506)
Q Consensus 175 ~~~~~~f~ 182 (506)
.++.+...
T Consensus 175 ~l~~~~~~ 182 (471)
T PRK10504 175 IIGAIATL 182 (471)
T ss_pred HHHHHHHH
Confidence 55554433
No 32
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.55 E-value=1e-12 Score=138.41 Aligned_cols=339 Identities=9% Similarity=-0.061 Sum_probs=180.5
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccc-cccccCCchH
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDY-KPECIGEGQK 93 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~-~~~~~~~~~~ 93 (506)
.+.+..|+++++|++..+.+.+.+.+.....+++++.|+++|| +||||++.++.....++...+.... .+ ...
T Consensus 30 ~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 103 (420)
T PRK09528 30 FSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAP-----LLQ 103 (420)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 3667889999999999999999999999999999999999999 7999999887666555433222110 00 000
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGI 169 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i 169 (506)
.....+..+.++..|..-+...+...+..++ .++ ++...++...... +|..+++.+ +++ .+|+..|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~ 175 (420)
T PRK09528 104 YNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VSR-------RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWL 175 (420)
T ss_pred HHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HHh-------hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHH
Confidence 0111222222332332222222222222111 111 1223456666677 899899888 777 789999988
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhh
Q 035916 170 LAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAI 249 (506)
Q Consensus 170 ~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~ 249 (506)
.++..++.++..+..++ +|..++.. +++ ++. ..+..+ .+...
T Consensus 176 ~~~~~~~~~~~~~~~~~-----~~~~~~~~----------~~~----~~~-----------------~~~~~~-~~~~~- 217 (420)
T PRK09528 176 GSGSALILLVLLFFAKP-----DAPSTAKV----------ANA----LGA-----------------NASAVS-LKDAL- 217 (420)
T ss_pred HHHHHHHHHHHHhcccc-----cccchhhh----------ccc----hhc-----------------cccccc-HHHHH-
Confidence 77666655544433221 11111100 000 000 000000 00000
Q ss_pred hcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhH
Q 035916 250 ILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYY 329 (506)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~ 329 (506)
+... .|.+..++.........+..++|....+..+. ..+.+.+ . --.+.+..++.
T Consensus 218 --------------------~~l~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~g~~~~~~~ 272 (420)
T PRK09528 218 --------------------ALLK-LPKFWFLVLYVIGVACFYDVFDQQFPNFFASF-FATPEQG--T-RVFGYLNSFQV 272 (420)
T ss_pred --------------------HHcc-CCCeEeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcc--h-HHHHHHHHHHH
Confidence 0000 11122222222222223333333333332221 1122211 0 01134455566
Q ss_pred HHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHH
Q 035916 330 ISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQF 409 (506)
Q Consensus 330 i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y 409 (506)
+...+..++..++. +|.+++.. +..+.++.+++....+.. -++++++...
T Consensus 273 ~~~~~~~~~~g~l~-------dr~g~~~~-~~~~~~l~~~~~~l~~~~----------------------~~~~~~~~~~ 322 (420)
T PRK09528 273 FLEALIMFFAPFII-------NRIGAKNA-LLLAGTIMAVRIIGSGFA----------------------TGPLEVSILK 322 (420)
T ss_pred HHHHHHHHHHHHHH-------HHhCcchh-hHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHH
Confidence 66666666666655 44432211 555566555555443321 1355667778
Q ss_pred HHHHHHHHhhhhhhHHHhhhccChhhHHHHHHH-HHHHhHHHHHHHhhhhhh
Q 035916 410 LLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYI-FVATMGVGIIGSTLSVYY 460 (506)
Q Consensus 410 ~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl-~~l~~aiG~~l~~~l~~~ 460 (506)
++.+++.....+...+++.++.|++.++...+. +.....+|..+++.+...
T Consensus 323 ~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~ 374 (420)
T PRK09528 323 LLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN 374 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence 888988888888888999999999999887655 566677777777766544
No 33
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.54 E-value=6.9e-12 Score=131.90 Aligned_cols=140 Identities=12% Similarity=0.125 Sum_probs=117.9
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..++.+++|.++.+.+.+.+.+.....++.++.|+++|| +|||+++.++..+..++.++...+. +.+.
T Consensus 38 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~--------~~~~ 108 (426)
T PRK12307 38 FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLAS--------GVIM 108 (426)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHh--------HHHH
Confidence 344556678899999999999999999999999999999999 7999999999999999988777662 5677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+++++.+.++|.|...+...++..|.++++ +|.+..+++..+. +|.++++.+ +++ .||+..|.+.
T Consensus 109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~ 178 (426)
T PRK12307 109 LTLSRFIVGMGMAGEYACASTYAVESWPKH----------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVG 178 (426)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCCHh----------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHH
Confidence 888999999999999999999999877432 2346778888888 999999887 666 7999999886
Q ss_pred HHHH
Q 035916 171 AMFT 174 (506)
Q Consensus 171 ~~~~ 174 (506)
.+..
T Consensus 179 ~~~~ 182 (426)
T PRK12307 179 LLPV 182 (426)
T ss_pred HHHH
Confidence 5443
No 34
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.54 E-value=1.1e-11 Score=129.75 Aligned_cols=138 Identities=18% Similarity=0.158 Sum_probs=113.0
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
...-+.+++|.|.++.+.+.+.+.....++.++.|+++|| +|||+++..+..+..+|.++.+.+. +...+.
T Consensus 31 ~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~--------~~~~ll 101 (393)
T PRK09705 31 LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYP--------QSALLL 101 (393)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCc--------chHHHH
Confidence 3345667899999999999999999999999999999999 7999999999999999999888763 456778
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILA 171 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~ 171 (506)
+++++.++|.|...++..+.+.|.+++ +|......+..+. .|..++..+ +++ .+|+..+.+-+
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~~-----------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~ 170 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQQ-----------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWA 170 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHccc-----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 899999999999999999988877631 2336677777777 888888887 665 37988876544
Q ss_pred HHHH
Q 035916 172 MFTT 175 (506)
Q Consensus 172 ~~~~ 175 (506)
+..+
T Consensus 171 ~~~~ 174 (393)
T PRK09705 171 LPAV 174 (393)
T ss_pred HHHH
Confidence 4433
No 35
>TIGR00898 2A0119 cation transport protein.
Probab=99.53 E-value=1.2e-11 Score=133.21 Aligned_cols=139 Identities=13% Similarity=0.137 Sum_probs=114.8
Q ss_pred HhhhccCh---hHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 22 LTEVWMIS---FVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 22 l~~~l~~~---~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
+.+++|++ ..+.+.+.+.+.....++.++.|+++|| +|||+++.++.++..++.++.+++. +.+.+++
T Consensus 115 i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~ 185 (505)
T TIGR00898 115 IVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKVLLLSTLVTAVSGVLTAFSP--------NYTVFLV 185 (505)
T ss_pred EEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHHHHHHHHHHHHHHHHHHHcc--------cHHHHHH
Confidence 45678888 8999999999999999999999999999 8999999999999998887776652 4677888
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHHhhhhHHHHHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFIKSWKIKFGILAMFTTV 176 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i~g~~~~F~i~~~~~~~ 176 (506)
.+.+.++|.|+..+...+++.|.++++. |.....++..+. +|.++++.+ .++.+|+..|.+.++..++
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~----------r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQ----------RAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFL 255 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhh----------hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999998884422 345666777777 999888888 4447799999887766555
Q ss_pred HHH
Q 035916 177 STL 179 (506)
Q Consensus 177 ~~~ 179 (506)
..+
T Consensus 256 ~~~ 258 (505)
T TIGR00898 256 FFL 258 (505)
T ss_pred HHH
Confidence 544
No 36
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.52 E-value=1.5e-11 Score=137.49 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=115.8
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..++..++|.+..+++.+.+++.....++++++|+++|| +|||++++++.++..++.++..++. +.+.
T Consensus 187 s~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~--------s~~~ 257 (742)
T TIGR01299 187 GFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQ--------GYGF 257 (742)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh--------hHHH
Confidence 334456667899999999999999999999999999999999 8999999999999988887776652 4677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-------------
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI------------- 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i------------- 160 (506)
+++++++.++|.|+..|...+++++.++++ +|...+++..... +|.++++.+ ..+
T Consensus 258 llv~R~l~G~g~g~~~p~~~~~isE~~p~~----------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 258 FLFCRLLSGFGIGGAIPIVFSYFAEFLAQE----------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 888999999999999999999999877431 2446677777777 888877765 222
Q ss_pred ---hhhhHHHHHHHHHHHHHHH
Q 035916 161 ---KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 161 ---~g~~~~F~i~~~~~~~~~~ 179 (506)
.+|++.|.+.++..++.++
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll 349 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIG 349 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHH
Confidence 2588888887766655544
No 37
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.51 E-value=8.2e-12 Score=131.72 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=110.9
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhc
Q 035916 28 ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGI 107 (506)
Q Consensus 28 ~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~ 107 (506)
.+..+.+.+.+.+.....++.++.|+++|| +|||+++.++..+..+|.++....+.. .+.+.+++++.+.++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~ 141 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFA-----LSVEMLIVGRVLLGIGV 141 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHhhh
Confidence 448999999999999999999999999999 799999999999999998877554321 23457888999999999
Q ss_pred ccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHHH---HH----hhhhHHHHHHHHHHHHHHH
Q 035916 108 SGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAFL---FI----KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 108 g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~~---~i----~g~~~~F~i~~~~~~~~~~ 179 (506)
|...+...++++|.++++ +|....++++.+. +|.++++.+. .. .||+..|.+.++..++..+
T Consensus 142 ~~~~~~~~~~i~~~~~~~----------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~ 211 (481)
T TIGR00879 142 GIASALVPMYLSEIAPKA----------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211 (481)
T ss_pred hHHHhHHHHHHHccCChh----------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999887542 2346788888888 9999998875 22 7899999986665555443
No 38
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.51 E-value=2.5e-11 Score=128.61 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=115.6
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+.+++|.+.++.+.+.+.+.....++.+++|+++|| +|||+.+.++..+..++.++...+ .+.+.+++.
T Consensus 47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 117 (434)
T PRK11663 47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFS--------SSLWAFALL 117 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHH--------hHHHHHHHH
Confidence 34456799999999999999999999999999999999 799999999999999988877665 245666777
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
+.+.+++.|..-|...+.+.|.++++ +|....++++.+. +|..+++.+ +++ .||+..|.+.++..
T Consensus 118 ~~l~g~~~g~~~~~~~~~~~~~~~~~----------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 118 WVLNAFFQGWGWPVCAKLLTAWYSRT----------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA 187 (434)
T ss_pred HHHHHHHHHccchHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77889999988899999999888432 3457789999999 999999888 666 89999999877654
Q ss_pred HHH
Q 035916 175 TVS 177 (506)
Q Consensus 175 ~~~ 177 (506)
++.
T Consensus 188 ~~~ 190 (434)
T PRK11663 188 IVV 190 (434)
T ss_pred HHH
Confidence 433
No 39
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.51 E-value=5.2e-12 Score=131.88 Aligned_cols=150 Identities=12% Similarity=0.035 Sum_probs=105.7
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcc-cccccccCCchHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFY-DYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~-~~~~~~~~~~~~~ 94 (506)
+.+..|+++++|++..+.+.+.+.+.....++.++.|+++|| +||||.++.+.....++...+.. ...+.. ......
T Consensus 23 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 100 (396)
T TIGR00882 23 PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLL-QSNILV 100 (396)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHH
Confidence 556788999999999999999999999999999999999999 79999998877766554432211 100000 000112
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGIL 170 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i~ 170 (506)
.+.++.++.+++.+...|...++..|.- ++ +...+++..... +|..+++.+ +.+ .+|+..|.+.
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~--------~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~ 168 (396)
T TIGR00882 101 GAIVGGLYLGFVFSAGAGAIEAYIEKVS----RN--------SNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLG 168 (396)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhh----hh--------cccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHH
Confidence 2344556677888888888877765421 11 113466777778 999999998 766 8999999887
Q ss_pred HHHHHHHHH
Q 035916 171 AMFTTVSTL 179 (506)
Q Consensus 171 ~~~~~~~~~ 179 (506)
++..++..+
T Consensus 169 ~~~~~~~~~ 177 (396)
T TIGR00882 169 SGFALILML 177 (396)
T ss_pred HHHHHHHHH
Confidence 766555443
No 40
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.50 E-value=3e-11 Score=129.01 Aligned_cols=143 Identities=10% Similarity=-0.045 Sum_probs=111.3
Q ss_pred ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccc----cCCchHHHHHHHHH
Q 035916 26 WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPEC----IGEGQKILLYTALG 101 (506)
Q Consensus 26 l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~----~~~~~~~~~~~~l~ 101 (506)
++.+..+.+.+.+.+.....+++++.|+++|| +||||++.++..++.++.+..+.+..... .+......+.++++
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~ 128 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRI 128 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHH
Confidence 48889999999999999999999999999999 89999999999999888776654321000 01123456778999
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-----------hhhhHHHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-----------KSWKIKFG 168 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-----------~g~~~~F~ 168 (506)
+.++|.|+.-|...++++|.++++ +|....+.+-.+. +|.++++.+ ..+ .||+..|.
T Consensus 129 l~G~~~g~~~~~~~~~i~e~~~~~----------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~ 198 (479)
T PRK10077 129 IGGIGVGLASMLSPMYIAEIAPAH----------IRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFA 198 (479)
T ss_pred HHhhhHhHHhhHHHHHHHhhCChh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHH
Confidence 999999999999999999988542 2346677777788 888888766 322 48999999
Q ss_pred HHHHHHHHHHH
Q 035916 169 ILAMFTTVSTL 179 (506)
Q Consensus 169 i~~~~~~~~~~ 179 (506)
+.++..++..+
T Consensus 199 ~~~~~~~~~~~ 209 (479)
T PRK10077 199 SEAIPALLFLM 209 (479)
T ss_pred HHHHHHHHHHH
Confidence 87766655443
No 41
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.50 E-value=4.9e-11 Score=124.84 Aligned_cols=136 Identities=10% Similarity=0.022 Sum_probs=109.6
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+..+++.+..+.+.+.+.+.....++.+++|+++|| +||||++.++..+..++.+.+.... + ..+.
T Consensus 27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~--------~---~~~~ 94 (393)
T PRK11195 27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGI--------H---PLLA 94 (393)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHH--------H---HHHH
Confidence 34457889999999999999999999999999999999 7999999999999988876654431 1 2567
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGILAMFTT 175 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i~~~~~~ 175 (506)
+.+.++|.|+..|...+++.|.++++ ++.+..++..... +|..+|+.+ +++ ..|+..|.+.+...+
T Consensus 95 r~l~G~~~a~~~pa~~a~i~~~~~~~----------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~ 164 (393)
T PRK11195 95 YGLVGIGAAAYSPAKYGILTELLPGE----------KLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999988542 3457888888888 999999999 777 556666666655444
Q ss_pred HH
Q 035916 176 VS 177 (506)
Q Consensus 176 ~~ 177 (506)
++
T Consensus 165 ~~ 166 (393)
T PRK11195 165 LA 166 (393)
T ss_pred HH
Confidence 33
No 42
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.50 E-value=5.5e-11 Score=123.73 Aligned_cols=340 Identities=13% Similarity=0.020 Sum_probs=200.0
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHH----HHHHHHHHhhhhhhcccccccccCCc
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMI----LVSSFAYTAVIKFLFYDYKPECIGEG 91 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti----~~~~~~~~iG~~~l~~~~~~~~~~~~ 91 (506)
+.+..|+ +++|.|.++.+.+.+.+.....+.+++.|.++|| .||++.. ..+..+..+. ....+ .
T Consensus 25 p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~~--~~~~~--------~ 92 (382)
T TIGR00902 25 PFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAAA--FSAGA--------H 92 (382)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHH--HHHhh--------h
Confidence 4455677 4689999999999999999999999999999999 6884433 2332222221 11111 2
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHH
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~ 166 (506)
+.+.+++...+.+.+.+...|...++..| + ++| +.+.+....... +|..+++.+ +++ .||+..
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~----~~~-------~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~ 160 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT-W----QKQ-------FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNI 160 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH-H----HHH-------cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 45677778888888888888888887543 2 121 234578888888 999999988 766 799999
Q ss_pred HHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhh
Q 035916 167 FGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDK 246 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~ 246 (506)
|.+.++...+....+.. .+ ..+|+++. ..++ ..+. .+.
T Consensus 161 f~~~~~~~~~~~~~~~~-~~---~~~~~~~~------------------~~~~-----------------~~~~---~~~ 198 (382)
T TIGR00902 161 LAILTAGLAFMLIGFLI-KP---TIPPKDAI------------------PEDE-----------------SQGD---SAF 198 (382)
T ss_pred HHHHHHHHHHHHHHHHc-CC---CCCCCccc------------------cccc-----------------cccc---hhH
Confidence 98766543332222221 11 00111000 0000 0000 000
Q ss_pred hhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhh
Q 035916 247 AAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLL 326 (506)
Q Consensus 247 a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~ 326 (506)
.++-..|+++ .+.+...+++..+.+..+.....-+ |.+.. +.-.+.+..
T Consensus 199 -----------------------~~~l~~~~~~---~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s---~~~~g~l~~ 247 (382)
T TIGR00902 199 -----------------------IALLKNPMNL---RFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS---ASATGLLWG 247 (382)
T ss_pred -----------------------HHHHcChHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC---HhHHHHHHH
Confidence 0000012222 2223334444555554443332211 22211 111233445
Q ss_pred hhHHHHhHhhhhhhhhhhccccccccccccccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHH
Q 035916 327 FYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWL 405 (506)
Q Consensus 327 ~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wl 405 (506)
++.+..++..++.+++. +|++ +++ +.+|.++.++.....+.. -+++++
T Consensus 248 ~~~~~~i~~~~~~~~l~-------~r~g--~~~~l~~~~~~~~~~~~~~~~~----------------------~~~~~~ 296 (382)
T TIGR00902 248 IGVLAEIIIFAFSNKLF-------QNCS--ARDLLLISAIACVGRWAIIGAI----------------------EAFPLI 296 (382)
T ss_pred HHHHHHHHHHHHhHHHH-------hhCC--HHHHHHHHHHHHHHHHHHHHhH----------------------hhHHHH
Confidence 56666666666666655 5553 333 667777777766554332 244555
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHH-HHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcchhH
Q 035916 406 LPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFV-ATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLD 484 (506)
Q Consensus 406 i~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~-l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~l~ 484 (506)
+...+++++.+.+..+....++.++ |++.++..+|++. ...++|..+++.+.+. +.|.. + .
T Consensus 297 ~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~-------------l~~~~--g--~ 358 (382)
T TIGR00902 297 FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF-------------IYPTL--G--A 358 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhc--c--H
Confidence 5555999999999999999999998 9999999999975 4667777777766443 32222 1 2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 035916 485 NYYWLLAALTAANLAVL 501 (506)
Q Consensus 485 ~~~~lla~l~~v~~~~f 501 (506)
..|++.++++++.+++.
T Consensus 359 ~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 359 GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34677788888776543
No 43
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.50 E-value=1.9e-11 Score=126.19 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=116.5
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHH
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGL 102 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l 102 (506)
.+++|.+.++++.+.+.+.....++.+++|+++|| +|||+.+..+..+..++..++.... +.+.+.+.+.+
T Consensus 18 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~l 88 (377)
T PRK11102 18 AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQ--------TIDQLIYMRFL 88 (377)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHc--------cHHHHHHHHHH
Confidence 36799999999999999999999999999999999 7999999999999999888777652 45667788889
Q ss_pred HHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHH
Q 035916 103 IAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVS 177 (506)
Q Consensus 103 ~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~ 177 (506)
.+++.+...+...++..|.++++ +|.+.+++.+... +|..+++.+ +++ .||+..|.+.++...+.
T Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 89 HGLAAAAASVVINALMRDMFPKE----------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 99999999999999999877432 2457789999999 999999988 666 68999998877666555
Q ss_pred HHH
Q 035916 178 TLV 180 (506)
Q Consensus 178 ~~~ 180 (506)
.+.
T Consensus 159 ~~~ 161 (377)
T PRK11102 159 AAL 161 (377)
T ss_pred HHH
Confidence 443
No 44
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.50 E-value=4e-11 Score=125.53 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=117.8
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
-+.+++|.+.++.+...+.+.....++.++.|.++|| +||||.+..+.++..++.++...+ .+.+.+++.+
T Consensus 45 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r 115 (394)
T PRK10213 45 PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFA--------NSFSLLLIGR 115 (394)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHH--------ChHHHHHHHH
Confidence 3457899999999999999999999999999999999 799999999999999988777665 2567888999
Q ss_pred HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTT 175 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~ 175 (506)
.+.+++.|...|...+++.|.++++ ++.+...++..+. +|.++++.+ +++ .||+..|.+.++..+
T Consensus 116 ~l~G~~~g~~~~~~~~~i~~~~~~~----------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~ 185 (394)
T PRK10213 116 ACLGLALGGFWAMSASLTMRLVPPR----------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGV 185 (394)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 9999999999999999999887432 3457788888888 999999999 777 799999998776554
Q ss_pred HHH
Q 035916 176 VST 178 (506)
Q Consensus 176 ~~~ 178 (506)
+..
T Consensus 186 ~~~ 188 (394)
T PRK10213 186 LCI 188 (394)
T ss_pred HHH
Confidence 433
No 45
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.49 E-value=1.7e-11 Score=130.80 Aligned_cols=138 Identities=10% Similarity=0.152 Sum_probs=113.4
Q ss_pred hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHH
Q 035916 25 VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIA 104 (506)
Q Consensus 25 ~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~ 104 (506)
+++++..+.+.+.+.+.....++.+++|+++|| +|||+++..+.++..++.++...+.. .....+++.+++.+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G 142 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQG 142 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHH
Confidence 578999999999999999999999999999999 79999999999988888766544321 12456788899999
Q ss_pred hhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---h-hhhHHHHHHHHHHHHHH
Q 035916 105 FGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---K-SWKIKFGILAMFTTVST 178 (506)
Q Consensus 105 ~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~-g~~~~F~i~~~~~~~~~ 178 (506)
++.|..-|....+..|.+++ + +|.+..++++.+. +|..+++.+ +++ . ||+..|.+.++..++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~---~-------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~ 212 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKWAPP---K-------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWS 212 (465)
T ss_pred HhcccchhhHHHHHHhcCCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHH
Confidence 99999999999999987633 2 3457889999989 999999988 776 3 99999998877654443
Q ss_pred H
Q 035916 179 L 179 (506)
Q Consensus 179 ~ 179 (506)
+
T Consensus 213 ~ 213 (465)
T TIGR00894 213 L 213 (465)
T ss_pred H
Confidence 3
No 46
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.49 E-value=3.7e-11 Score=124.80 Aligned_cols=146 Identities=17% Similarity=0.112 Sum_probs=108.3
Q ss_pred hhchhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCc
Q 035916 12 AFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEG 91 (506)
Q Consensus 12 ~yg~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~ 91 (506)
++..+.....+.+++|.+.++.+.+.+.+.....++.+.+|+++|| +|||+++..+......+.+... ++ .
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~-~~-------~ 77 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAGRLL-DP-------F 77 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHH-Hh-------c
Confidence 3334445556678999999999999999999999999999999999 6999887665555544432222 11 2
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHH
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~ 166 (506)
+...+.+++++.++|.|.. ++..+..+|.+++ + +|.+..++...+. +|.++++.+ +++ .|||..
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~---~-------~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~ 146 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIRE---E-------RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLL 146 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 4678889999999999864 4445555766632 2 3567899999999 999999988 666 899999
Q ss_pred HHHHHHHHHHH
Q 035916 167 FGILAMFTTVS 177 (506)
Q Consensus 167 F~i~~~~~~~~ 177 (506)
|.+.++.-++.
T Consensus 147 f~~~~~l~~~~ 157 (368)
T TIGR00903 147 IIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHH
Confidence 98855554333
No 47
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.49 E-value=4.6e-11 Score=124.79 Aligned_cols=146 Identities=10% Similarity=0.009 Sum_probs=96.4
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHH-HHHhHHHHHHHhhhccCchhHHHH-HHHHHHHhhhhhhcccccccccCCch
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWG-TAHVLPLAIRYLVDTTISKYWMIL-VSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~-~~~~~~llgG~laD~~lGr~~ti~-~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
.+.+..|+++++|.+.++.+.+++.... ...+.++.+|+ +|| +||||.++ .+.++..++.++..++. +
T Consensus 35 ~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~--------~ 104 (393)
T PRK15011 35 TPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNR--------N 104 (393)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhh--------H
Confidence 3667889999999999999999876544 45556777777 999 69998765 44555556655555442 2
Q ss_pred HHHHH-HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHH
Q 035916 93 KILLY-TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 93 ~~~~~-~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~ 166 (506)
.+.++ .++.+.+.+. ...|...++..|..++++ | +...+.++..... +|.++++.+ +++ .||+..
T Consensus 105 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~ 175 (393)
T PRK15011 105 YFVLLFVGVFLSSFGS-TANPQMFALAREHADKTG---R-----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVM 175 (393)
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhcc---c-----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHH
Confidence 33333 3444444443 566777777776442211 1 1122335777788 999999988 777 699999
Q ss_pred HHHHHHHHHHHHH
Q 035916 167 FGILAMFTTVSTL 179 (506)
Q Consensus 167 F~i~~~~~~~~~~ 179 (506)
|.+.++..++..+
T Consensus 176 f~~~~~~~~~~~~ 188 (393)
T PRK15011 176 YLSAAVAFIVCGV 188 (393)
T ss_pred HHHHHHHHHHHHH
Confidence 9987766554443
No 48
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.49 E-value=6.6e-11 Score=124.62 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=120.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.....+.+++|.+.++.+.+.+.+....-++.+++|+++|| +||||++..+.++..++.++.+++. +...
T Consensus 28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 98 (412)
T TIGR02332 28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFAT--------GPES 98 (412)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc--------CHHH
Confidence 344567889999999999999999999999999999999999 8999999999999999988877652 4567
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---------hhhh
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---------KSWK 164 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---------~g~~ 164 (506)
+++++.+.++|.|..-|...++..|.+++ + +|....+++.... +|..+++.+ +++ .||+
T Consensus 99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~---~-------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 99 LYLLRILVGIAEAGFLPGILLYLTFWFPA---Y-------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 88899999999999999888888877743 2 2446788888888 999999888 665 3899
Q ss_pred HHHHHHHHHHHHHHH
Q 035916 165 IKFGILAMFTTVSTL 179 (506)
Q Consensus 165 ~~F~i~~~~~~~~~~ 179 (506)
..|.+.++..++..+
T Consensus 169 ~~f~~~~~~~l~~~~ 183 (412)
T TIGR02332 169 WLFLLEGFPSVILGV 183 (412)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999987766554433
No 49
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.48 E-value=2.1e-11 Score=125.49 Aligned_cols=163 Identities=15% Similarity=0.146 Sum_probs=108.7
Q ss_pred hhhhhhhhchhHHHHHHhhhccC--hhHHHHHHHHH--HHH---HHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhh
Q 035916 6 WSDVFVAFVFWMMMDYLTEVWMI--SFVHAAGIVNI--FWG---TAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKF 78 (506)
Q Consensus 6 ~~~~fs~yg~~~l~~yl~~~l~~--~~~~a~~i~~~--~~~---~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~ 78 (506)
+.|-+..+..+.+..++.++... ++++.+.+.+. +.. ...+++++.|+++|| +||||++..+..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHH
Confidence 34444555555666777666543 33333333332 222 123467899999999 79999999999999999888
Q ss_pred hcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH
Q 035916 79 LFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF 157 (506)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~ 157 (506)
.................+++++.+.++|.|...+...+++.|.++++ +|.....+...+. +|.++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~G~~i~~~~ 151 (394)
T TIGR00883 82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG----------KRGFYGSFQQVGAPVGLLLAALT 151 (394)
T ss_pred HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc----------cchHHHHHHHHHHHHHHHHHHHH
Confidence 77663210000001235677889999999999999999999876432 2446778888888 888888776
Q ss_pred -HHH-----------hhhhHHHHHHHHHHHHHHH
Q 035916 158 -LFI-----------KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 158 -~~i-----------~g~~~~F~i~~~~~~~~~~ 179 (506)
..+ .+|+..|.+.++..+++..
T Consensus 152 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 152 VLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence 332 4799999887766555443
No 50
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.48 E-value=7.1e-11 Score=122.85 Aligned_cols=317 Identities=13% Similarity=0.018 Sum_probs=179.2
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchh----HHHHHHHHHHHhhhhhhcccccccccCCc
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKY----WMILVSSFAYTAVIKFLFYDYKPECIGEG 91 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~----~ti~~~~~~~~iG~~~l~~~~~~~~~~~~ 91 (506)
+.+..|+ +++|.|..+.+.+.+.+.....++.+++|.++|| +||+ +.+.++..+..++ ....+ +
T Consensus 25 p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~--~~~~~--------~ 92 (382)
T PRK11128 25 PFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLFAVA--FWFGA--------H 92 (382)
T ss_pred hhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHHHHH--HHHhc--------c
Confidence 3455677 5589999999999999999999999999999999 7983 4433333222221 11111 2
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHH
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~ 166 (506)
+.+.+++...+.+++.+...|...++..|.. ++ +++.+++..... +|..+++.+ +++ .||+..
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~-~~-----------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~ 160 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTWQ-KQ-----------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAI 160 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHHH-hh-----------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHH
Confidence 4667777888889999999998888877642 11 123356666677 888888888 766 699999
Q ss_pred HHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhh
Q 035916 167 FGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDK 246 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~ 246 (506)
|.+.++..++..+.... .+ +.+|++++ ++ +. .....++
T Consensus 161 f~~~~~~~~~~~~~~~~-~~---~~~~~~~~--------------~~---~~------------------~~~~~~~--- 198 (382)
T PRK11128 161 LWILTAGVASMLLGQLL-RP---TIMPQGES--------------RQ---QE------------------SAGWPAW--- 198 (382)
T ss_pred HHHHHHHHHHHHHHHHc-cC---CCCCcccc--------------cc---cc------------------ccccchH---
Confidence 98777654443332221 11 11111100 00 00 0000000
Q ss_pred hhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhh
Q 035916 247 AAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLL 326 (506)
Q Consensus 247 a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~ 326 (506)
.+.-..|.++. +.+...+.+..+.+..+......+ |.+.. +-..+.+..
T Consensus 199 -----------------------~~i~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~--~~g~s---~~~~g~~~~ 247 (382)
T PRK11128 199 -----------------------KALLKEPTVWR---FLLCVSLLQGSHAAYYGFSAIYWQ--AAGYS---ASTIGYLWS 247 (382)
T ss_pred -----------------------HHHHcChhHHH---HHHHHHHHHHHhHhHHHHHHHHHH--HCCCC---HhHHHHHHH
Confidence 00101122222 222223333333333232222211 21211 111234555
Q ss_pred hhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHH
Q 035916 327 FYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLL 406 (506)
Q Consensus 327 ~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli 406 (506)
++.+..++..++.+++. +|.+.+.. +..+.++.+++++..+.. -++++.+
T Consensus 248 ~~~~~~~~~~~~~g~l~-------~r~~~~~~-l~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 297 (382)
T PRK11128 248 LGVVAEVLIFAFSNRLF-------RRWSARDL-LLLSAICGVVRWGLMGST----------------------TALPWLI 297 (382)
T ss_pred HHHHHHHHHHHHHHHHH-------HHCCHHHH-HHHHHHHHHHHHHHHHhh----------------------hhHHHHH
Confidence 66666666666666665 55432222 556666666555433221 2455566
Q ss_pred HHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHH-HHhHHHHHHHhhhhhh
Q 035916 407 PQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFV-ATMGVGIIGSTLSVYY 460 (506)
Q Consensus 407 ~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~-l~~aiG~~l~~~l~~~ 460 (506)
...++.++++.+..+...+++.++. ++.++..+++.. ...++|..+++.+.+.
T Consensus 298 ~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 298 VIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999988885 555688899876 5556666666655433
No 51
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.47 E-value=8.3e-11 Score=122.58 Aligned_cols=139 Identities=12% Similarity=0.066 Sum_probs=113.1
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.++.+++|.+..+.+.+.+.+.....++.++.|+++|| +||||.+..+..+..++.++...+ .+.+.+++.
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 102 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFA--------HSLTVLIAA 102 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHH--------ccHHHHHHH
Confidence 45568899999999999999999999999999999999 799999999999998888776654 245677888
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
+.+.+++.|...+...++..|.++++ ++.+..+++..+. +|.++++.+ +++ .||+..|.+.++..
T Consensus 103 ~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~ 172 (394)
T PRK11652 103 SAIQGLGTGVGGVMARTLPRDLYEGT----------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLG 172 (394)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 89999999888887778887766431 2346677777888 899999888 666 78999999876655
Q ss_pred HHH
Q 035916 175 TVS 177 (506)
Q Consensus 175 ~~~ 177 (506)
.+.
T Consensus 173 ~~~ 175 (394)
T PRK11652 173 AGV 175 (394)
T ss_pred HHH
Confidence 443
No 52
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.47 E-value=7.3e-11 Score=122.77 Aligned_cols=142 Identities=14% Similarity=0.101 Sum_probs=116.5
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
...+.+++|.+.++.+.+.+.+.....++.++.|+++|| +|||+++..+..+..++.++...+ .+.+.+++
T Consensus 26 l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~--------~~~~~l~~ 96 (382)
T PRK10091 26 LTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLS--------SSYLMLAI 96 (382)
T ss_pred hHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHh--------CcHHHHHH
Confidence 345668899999999999999999999999999999999 799999999999999998877765 25677888
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMF 173 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~ 173 (506)
++.+.+++.|...+...+...|.++++ ++.+..+.+.... +|..+++.+ +++ .||+..|.+.++.
T Consensus 97 ~r~l~G~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~ 166 (382)
T PRK10091 97 GRLVSGFPHGAFFGVGAIVLSKIIKPG----------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVF 166 (382)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCChH----------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHH
Confidence 999999999998888888777665331 2345677777788 999998887 666 7999999988776
Q ss_pred HHHHHH
Q 035916 174 TTVSTL 179 (506)
Q Consensus 174 ~~~~~~ 179 (506)
..+..+
T Consensus 167 ~~~~~~ 172 (382)
T PRK10091 167 NIAVLA 172 (382)
T ss_pred HHHHHH
Confidence 554443
No 53
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.47 E-value=2.2e-11 Score=126.57 Aligned_cols=125 Identities=9% Similarity=-0.013 Sum_probs=103.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+ +++|.|..+++.+.+.+.....+++++.|+++|| +||||.+..+..+..++......+ .+.+.
T Consensus 27 ~~lp~~~-~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~--------~~~~~ 96 (381)
T PRK03633 27 TLVPLWL-AQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLM--------VGFWS 96 (381)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh--------ccHHH
Confidence 3344555 4689999999999999999999999999999999 799999999999999988776665 24677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+.+++++.++|.|...|...+...|..++ + ++.+.++++..+. +|..+++.+ +++
T Consensus 97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~g~~~g~~~~~~l 153 (381)
T PRK03633 97 WLAWRFVAGIGCAMIWVVVESALMCSGTS---R-------NRGRLLAAYMMVYYLGTVLGQLLVSKV 153 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78889999999999988887777776533 2 2457789988888 999999988 666
No 54
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.46 E-value=5.7e-11 Score=125.29 Aligned_cols=337 Identities=13% Similarity=0.114 Sum_probs=192.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc---CchhHH-HHHHHHHHHhhhhhhcccccccccCCc
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT---ISKYWM-ILVSSFAYTAVIKFLFYDYKPECIGEG 91 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~---lGr~~t-i~~~~~~~~iG~~~l~~~~~~~~~~~~ 91 (506)
+.+..|+++.+|.+.++++.+..+......+..++.|+++||. +||||. ++.+.....++.+++... |+.....
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~--~~~~~~~ 97 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT--PDFSATG 97 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC--CCCCcch
Confidence 4577889999999999999999999999999999999999983 799764 667777787777666544 2111112
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---------
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--------- 160 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--------- 160 (506)
....+++...+.+++.+.......++.+|..++ ++| |.+..++..... +|.+++..+ +.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~-------R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~ 168 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PRE-------RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDD 168 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 234444555667888888888888888876543 333 446777777777 877666554 322
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCC
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSR 239 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (506)
.||+..|.+.++...+...+.....| ++++..+ .+ ..+
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~----e~~~~~~--------------------~~-----------------~~~ 207 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTK----ERYSEIP--------------------KN-----------------IEK 207 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCE----ecCCCCC--------------------cc-----------------ccc
Confidence 36888888777665555443332222 1110000 00 000
Q ss_pred CcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCcee
Q 035916 240 GLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSF 319 (506)
Q Consensus 240 ~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~i 319 (506)
+.+..+..+ +.-..|.+.. ++....+.+..+....+..... .+...+ . .-
T Consensus 208 ~~~~~~~~~----------------------~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~-~~ 257 (437)
T TIGR00792 208 KLSLKQIFK----------------------ALFKNDQLLI---LCLAYLFYNLAFNIKNGVQVYY---FTYVLG-D-PE 257 (437)
T ss_pred CCCHHHHHH----------------------HHhCCHHHHH---HHHHHHHHHHHHHHHcchhhee---EeeecC-C-hH
Confidence 000000000 0000112221 2222222233222111111100 011111 0 00
Q ss_pred ChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCcc
Q 035916 320 GPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIP 399 (506)
Q Consensus 320 p~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~ 399 (506)
-.+.+..+..+..++..|+..++. +|.+++ +.+.+|.++.+++++...+..
T Consensus 258 ~~~~~~~~~~i~~ii~~~~~~~l~-------~r~g~~-~~~~~~~~~~~~~~~~~~~~~--------------------- 308 (437)
T TIGR00792 258 LFSYMGSIAIVAGLIGVLLFPRLV-------KKFGRK-ILFAGGILLMVLGYLIFFFAG--------------------- 308 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhCcH-HHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 112344455566666677766665 554321 225566666666554433210
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHHHhhhccC-------hhhHHHHHHHHHHHhHHHHHHHhhhhhhhcc
Q 035916 400 MSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFP-------RMIFRYLKYIFVATMGVGIIGSTLSVYYAGI 463 (506)
Q Consensus 400 is~~wli~~y~l~~igE~l~~~~~lef~~~~aP-------~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~ 463 (506)
-+.++.+...++.+++.....+.......+.+| ++.+|..+|++.+...+|..+++.+...+-.
T Consensus 309 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 309 SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344555678888888888888888777655 6778999999999988888888877766543
No 55
>PRK03699 putative transporter; Provisional
Probab=99.46 E-value=7.9e-11 Score=123.05 Aligned_cols=141 Identities=7% Similarity=0.056 Sum_probs=114.4
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.-+.+++|+|.++.+.+.+.+.....++.+++|+++|| +||||++..+..+..++.+++..+ .+.+.+.+.
T Consensus 31 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~ 101 (394)
T PRK03699 31 GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFS--------HSLALFSIA 101 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHc--------chHHHHHHH
Confidence 44567899999999999999999999999999999999 799999999999999988877765 245677888
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILAMF 173 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~~~ 173 (506)
+.+.+++.|...++..+.+.|.++++ +|....+..+... +|..+++.+ +++ .||+..|.+.++.
T Consensus 102 ~~l~G~~~g~~~~~~~~~i~~~~~~~----------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~ 171 (394)
T PRK03699 102 MFVLGVVSGITMSIGTFLITHVYEGK----------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLV 171 (394)
T ss_pred HHHHHHhhHhhccchhHHhhhhcccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 89999999999999999999888431 2335566666777 888888877 655 6899999987766
Q ss_pred HHHHHH
Q 035916 174 TTVSTL 179 (506)
Q Consensus 174 ~~~~~~ 179 (506)
.++..+
T Consensus 172 ~~~~~~ 177 (394)
T PRK03699 172 YVAIFI 177 (394)
T ss_pred HHHHHH
Confidence 555443
No 56
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.46 E-value=6.8e-11 Score=121.38 Aligned_cols=146 Identities=18% Similarity=0.139 Sum_probs=104.0
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc----CchhHHH-HHHHHHHHhhhhhhcccccccccCCch
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT----ISKYWMI-LVSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~----lGr~~ti-~~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
....+.+++|+|.++.+..... +..+...++.|.++||+ +||||.+ ..+.++..+....+.... + ..+
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~--~~~~~~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~-~----~~~ 82 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLV--GLPYSLKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV-P----STD 82 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC-c----chh
Confidence 4444556789999999988644 33334478999999996 5999985 566666666655554432 1 123
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh-----
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS----- 162 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g----- 162 (506)
.+.++....+.+++.+...+...+++.|.+++ + +|....++...+. +|.++++.+ .++ .|
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~-------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~ 152 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSD---E-------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL 152 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---h-------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 44445455566788888999999999988843 2 3457788888888 999998888 555 66
Q ss_pred ---hhHHHHHHHHHHHHHHHH
Q 035916 163 ---WKIKFGILAMFTTVSTLV 180 (506)
Q Consensus 163 ---~~~~F~i~~~~~~~~~~~ 180 (506)
|+..|.+.++..+++.++
T Consensus 153 ~~~wr~~f~i~ai~~l~~~~~ 173 (356)
T TIGR00901 153 ITLWGYIFFWTALLILPGLLV 173 (356)
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 999999988877665543
No 57
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.45 E-value=8.8e-11 Score=120.59 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=116.1
Q ss_pred hhhhhhhc-hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccc
Q 035916 7 SDVFVAFV-FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKP 85 (506)
Q Consensus 7 ~~~fs~yg-~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~ 85 (506)
+|.-.+|. ...+...+.+++|++.++++.+.+.+.....++.++.|+++|| +||||++.++..+..++.+.. ..
T Consensus 10 ~~~~~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~--- 84 (355)
T TIGR00896 10 LNLRPALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SA--- 84 (355)
T ss_pred hcccCccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-Hh---
Confidence 34444555 4556667888999999999999999999999999999999999 899999999998888887665 32
Q ss_pred cccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---
Q 035916 86 ECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--- 160 (506)
Q Consensus 86 ~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--- 160 (506)
.+...+.++..+.++|.|...+..++...|.+++ ++.+..+++.... +|..+++.+ +.+
T Consensus 85 -----~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 85 -----PGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-----------RVGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcc-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1346677888899999999888888887765532 2346788888888 999888877 555
Q ss_pred h--hhhHHHHHHHHHHHHH
Q 035916 161 K--SWKIKFGILAMFTTVS 177 (506)
Q Consensus 161 ~--g~~~~F~i~~~~~~~~ 177 (506)
. +|+..|.+.++..++.
T Consensus 149 ~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 149 SGGHWQQALAWWALPALLA 167 (355)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 2 3888887766544443
No 58
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.45 E-value=1.1e-10 Score=123.46 Aligned_cols=152 Identities=15% Similarity=0.179 Sum_probs=106.1
Q ss_pred hhHHHHHHhhhcc---ChhHHHHHHHHHHHHHHH---hHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 15 FWMMMDYLTEVWM---ISFVHAAGIVNIFWGTAH---VLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 15 ~~~l~~yl~~~l~---~~~~~a~~i~~~~~~~~~---~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
.+.+..++.++++ .+..+.+.+...+..... ++.+++|+++|| +||||++.++..++.++.++.+++......
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 119 (432)
T PRK10406 41 YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYETI 119 (432)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchhH
Confidence 3555667777774 455544444444443333 777899999999 799999999999999998887665210000
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH------
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI------ 160 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i------ 160 (506)
.......+.+.+.+.++|.|+..|...++++|.++++ +|....+..+... .|.+++..+ ..+
T Consensus 120 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~----------~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 189 (432)
T PRK10406 120 GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG----------RKGFYASFQYVTLIGGQLLALLVVVVLQQTLED 189 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 0012346788999999999999999999999877432 2346677778787 888777765 322
Q ss_pred -----hhhhHHHHHHHHHHHHH
Q 035916 161 -----KSWKIKFGILAMFTTVS 177 (506)
Q Consensus 161 -----~g~~~~F~i~~~~~~~~ 177 (506)
.|||..|.+.++..++.
T Consensus 190 ~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 190 AELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHhccchHHHHHHHHHHHHHH
Confidence 58999999877655443
No 59
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.44 E-value=5.1e-11 Score=127.91 Aligned_cols=141 Identities=12% Similarity=0.152 Sum_probs=118.2
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..++.+++|.+..+++.+.+.+.....++.+++|+++|| +|||+++..+..+..++.+++.++. +.+.
T Consensus 40 ~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 110 (496)
T PRK03893 40 TLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAP--------GYWT 110 (496)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHh--------HHHH
Confidence 444556778899999999999999999999999999999999 7999999999999999988877652 4567
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
++++..+.+++.|+..+...++..|.++++ +|...++.++... +|.++++.+ +++ .||+..|.+.
T Consensus 111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 111 LFIARLVIGMGMAGEYGSSATYVIESWPKH----------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 888899999999999999999999887432 2456788888888 999999988 766 8999999875
Q ss_pred HHHHH
Q 035916 171 AMFTT 175 (506)
Q Consensus 171 ~~~~~ 175 (506)
++..+
T Consensus 181 ~~~~~ 185 (496)
T PRK03893 181 ILPII 185 (496)
T ss_pred HHHHH
Confidence 54433
No 60
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.44 E-value=2.1e-10 Score=122.21 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=112.0
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
...|+.++ |.+..+.+.+.+.+.....++.+++|+++|| +|||+++.++..+..++.+++.+.... ..+...+.
T Consensus 51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~ 124 (452)
T PRK11273 51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWA----TSSIAVMF 124 (452)
T ss_pred hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcc----cccHHHHH
Confidence 34577777 9999999999999999999999999999999 799999999999998888777654210 12355667
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHH-HHHHHH-HHH---hhhhHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPN-ILSIAF-LFI---KSWKIKFGILA 171 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~-~i~~~~-~~i---~g~~~~F~i~~ 171 (506)
+.+.+.+++.|...|...+...|.+++ + +|....++++.+. +|. +.+++. ..+ .||+..|.+.+
T Consensus 125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~---~-------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~ 194 (452)
T PRK11273 125 VLLFLCGWFQGMGWPPCGRTMVHWWSQ---K-------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPA 194 (452)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhCCh---H-------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHH
Confidence 778889999999888888888887743 2 2456788888888 876 556654 222 69999999877
Q ss_pred HHHHHHH
Q 035916 172 MFTTVST 178 (506)
Q Consensus 172 ~~~~~~~ 178 (506)
+..++..
T Consensus 195 ~~~~~~~ 201 (452)
T PRK11273 195 FAAILVA 201 (452)
T ss_pred HHHHHHH
Confidence 6655543
No 61
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.44 E-value=6.9e-11 Score=124.79 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=73.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+++++|++..+.+.+.+.+.....+++++.|.++||+-|||+++.++.....++..+..... +.+.
T Consensus 23 ~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~--------~~~~ 94 (418)
T TIGR00889 23 VTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVT--------TPAG 94 (418)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhc--------CHHH
Confidence 67889999999999999999999999999999999999999943557788887777766665555431 3455
Q ss_pred HHHHHHHHHhhcccccccchhhh
Q 035916 96 LYTALGLIAFGISGHMGSIDRFI 118 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~ 118 (506)
+++.+.+.+++.+...|...+..
T Consensus 95 ~~~~~~l~~~~~~~~~~~~~~l~ 117 (418)
T TIGR00889 95 MFPVLLANSLAYMPTIALTNSIS 117 (418)
T ss_pred HHHHHHHHHHHHccHHHHHHHHH
Confidence 55666667777666666555544
No 62
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.42 E-value=5.3e-10 Score=117.82 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=114.2
Q ss_pred HhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHH
Q 035916 22 LTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALG 101 (506)
Q Consensus 22 l~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~ 101 (506)
+.+++|.+.++++..++.+.....++.+++|+++|| +|||+++..+..+..++.++...+ .+...+.++++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a--------~~~~~l~~~r~ 112 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFT--------TSMTQFLIARF 112 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHc--------CCHHHHHHHHH
Confidence 346789999999999999999999999999999999 799999999999999888777665 24667888999
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTV 176 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~ 176 (506)
+.++|.+..-+...+...|.+++++ +.+..+++..+. +|..+++.+ +++ .||+..|.+.++..++
T Consensus 113 l~Gi~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i 182 (413)
T PRK15403 113 IQGTSICFIATVGYVTVQEAFGQTK----------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLI 182 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999998766666677777774422 346688888888 999999988 666 6999999988776666
Q ss_pred HHH
Q 035916 177 STL 179 (506)
Q Consensus 177 ~~~ 179 (506)
+.+
T Consensus 183 ~~~ 185 (413)
T PRK15403 183 AFV 185 (413)
T ss_pred HHH
Confidence 554
No 63
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.42 E-value=1.5e-10 Score=136.88 Aligned_cols=126 Identities=14% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHhhhccChh--HHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 19 MDYLTEVWMISF--VHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 19 ~~yl~~~l~~~~--~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
..++...++.+. ...+.+.+++.....++++++|+++|| +|||++++++..+..++.++..+.... .+.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l 106 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYL-----GWFWLA 106 (1146)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHH-----ccHHHH
Confidence 344545555543 346788888888889999999999999 799999999988776665554433211 245778
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
++.+++.+++.|...|...++++|.++++ ++...++++..+. +|.++|+.+ +++
T Consensus 107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~----------~r~~~~~~~~~~~~ig~~lg~~l~~~l 162 (1146)
T PRK08633 107 FAVTFLLGAQSAIYSPAKYGIIPELVGKE----------NLSRANGLLEAFTIVAILAGTALFSFL 162 (1146)
T ss_pred HHHHHHHHHHHHhhchHHHhhhHHhcCcc----------cchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999988542 2457789999999 999999988 666
No 64
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.41 E-value=2.1e-10 Score=119.45 Aligned_cols=141 Identities=10% Similarity=0.046 Sum_probs=115.3
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
.+.+++|.+..+.+.+.+.+.....++.++.|+++|| +|||+.+..+..+..++.+++..+. +...++++.
T Consensus 28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~ 98 (392)
T PRK10473 28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAE--------TSSLFLAGR 98 (392)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhC--------cHHHHHHHH
Confidence 4457899999999999999998888999999999999 7999999999999999887776552 345667788
Q ss_pred HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTT 175 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~ 175 (506)
.+.+++.+...+...+++.|.+++ + +|.+..++.+... +|..+++.+ .++ .||+..|.+.++..+
T Consensus 99 ~l~g~~~~~~~~~~~~~i~~~~~~---~-------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~ 168 (392)
T PRK10473 99 FLQGIGAGCCYVVAFAILRDTLDD---R-------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI 168 (392)
T ss_pred HHHHhhhhHHHHHHHHHHHHHcCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence 889999999888889999987743 2 2457788888888 999999888 655 789999988776655
Q ss_pred HHHHH
Q 035916 176 VSTLV 180 (506)
Q Consensus 176 ~~~~~ 180 (506)
+..+.
T Consensus 169 i~~~~ 173 (392)
T PRK10473 169 LVLLL 173 (392)
T ss_pred HHHHH
Confidence 55443
No 65
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.39 E-value=1.6e-10 Score=136.76 Aligned_cols=329 Identities=11% Similarity=-0.017 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHH--HHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhccc
Q 035916 32 HAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILV--SSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISG 109 (506)
Q Consensus 32 ~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~--~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~ 109 (506)
..+...+++.....++.+++|+++|| +||||++.. ...+...+..++.... .+.+.+++++++.+++.+.
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~~~l~gi~~a~ 124 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHL-------NSVPLLFAALFLMGIHSAL 124 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHh
Confidence 35666667777778899999999999 799997633 2222222222222111 2467889999999999999
Q ss_pred ccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHHHHHhc
Q 035916 110 HMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTLVFLSG 184 (506)
Q Consensus 110 ~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~~f~~~ 184 (506)
+.|...+++.|.++++ ++..+.++..++. +|.++|+.+ +++ .||+..|.+.++..++++++...-
T Consensus 125 ~~p~~~a~l~~~~~~~----------~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (1140)
T PRK06814 125 FGPIKYSILPDHLNKD----------ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFI 194 (1140)
T ss_pred hchHHHHhhHhhcCcc----------ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999998552 2457899999999 999999999 777 889888844444433333322111
Q ss_pred CcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhhhcCcccccccccCcc
Q 035916 185 SSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRW 264 (506)
Q Consensus 185 ~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~ 264 (506)
+ ..+++..+. + . + . +..+... .+
T Consensus 195 -~---~~~~~~~~~--------------~---~-~------------------~---~~~~~~~------------~~-- 217 (1140)
T PRK06814 195 -P---KTGNAAPDL--------------K---I-D------------------R---NIIRSTI------------TL-- 217 (1140)
T ss_pred -C---CCCCCCCCC--------------e---e-c------------------c---chHHHHH------------HH--
Confidence 1 011110000 0 0 0 0 0000000 00
Q ss_pred cccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhh
Q 035916 265 RLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVG 344 (506)
Q Consensus 265 ~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~ 344 (506)
+ ..+-..|.+.. +.+....++.+.....+.+..... + .++ .-..-.+.+.....+..++...+..++.
T Consensus 218 --~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~p~~~~--~-~~g-~~~~~~g~~~~~~~~g~~ig~~~~g~l~- 285 (1140)
T PRK06814 218 --L--KYAKADKRIWL---AILGISWFWLVGAVVLSQLPLLAK--E-TLG-GDENVATLFLAVFSVGVAVGSFLASKLS- 285 (1140)
T ss_pred --H--HHHhcCchHHH---HHHHHHHHHHHHHHHHHHhHHHHH--H-HcC-CchHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0 00000111211 122222333333222222222111 1 112 0011123455666666666666666654
Q ss_pred ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCC------CCccchHHHHHHHHHHHHHHHHh
Q 035916 345 HLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPD------EKIPMSLFWLLPQFLLLGAADGF 418 (506)
Q Consensus 345 pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~------~~~~is~~wli~~y~l~~igE~l 418 (506)
+|+. ....+..|.++.++..+.....- .+....... -....+.++++...++.|++..+
T Consensus 286 ------~~~~-~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 350 (1140)
T PRK06814 286 ------EGRI-TLLYVPIGALLMGLFGLDLAFAS--------SSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGL 350 (1140)
T ss_pred ------CCce-eeeeehHHHHHHHHHHHHHHhcc--------cccccccccccchhhhhcccccHHHHHHHHHHHHHHHH
Confidence 3221 11114444444443333222210 000000000 00013456677788899999999
Q ss_pred hhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhc
Q 035916 419 YEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAG 462 (506)
Q Consensus 419 ~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~ 462 (506)
..+.....+.+.+|++++|.++|+..+...+|..+++.+...+.
T Consensus 351 ~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 351 YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888766653
No 66
>PRK11043 putative transporter; Provisional
Probab=99.37 E-value=1.5e-10 Score=120.95 Aligned_cols=139 Identities=12% Similarity=0.071 Sum_probs=113.2
Q ss_pred HhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHH
Q 035916 22 LTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALG 101 (506)
Q Consensus 22 l~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~ 101 (506)
+.+++|.+.++++.+.+.+.....++.++.|+++|| +|||+.+..+..+..++.++...+. +.+.+.+++.
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~ 102 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVE--------SAAQLLVLRF 102 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHH
Confidence 567899999999999999999999999999999999 7999999999999888877766552 4566778888
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTV 176 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~ 176 (506)
+.++|.+...+...++..|.++++ ++.+.++...... +|..+++.+ +++ .||+..|.+.++..++
T Consensus 103 l~G~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~ 172 (401)
T PRK11043 103 VQAVGVCSAAVIWQALVIDRYPAQ----------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLL 172 (401)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCcH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 899998888888888888877432 2335677777777 888899888 766 7999999887766555
Q ss_pred HHH
Q 035916 177 STL 179 (506)
Q Consensus 177 ~~~ 179 (506)
..+
T Consensus 173 ~~~ 175 (401)
T PRK11043 173 LIL 175 (401)
T ss_pred HHH
Confidence 444
No 67
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.37 E-value=1.2e-09 Score=118.15 Aligned_cols=341 Identities=14% Similarity=0.039 Sum_probs=202.4
Q ss_pred hhhhhhhc--hhH-HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccc
Q 035916 7 SDVFVAFV--FWM-MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDY 83 (506)
Q Consensus 7 ~~~fs~yg--~~~-l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~ 83 (506)
+.-+|..| +.. -...+..++.-|....+.+..+...-..++.+++|.++|| +.|||.++.+..+..+..+++++..
T Consensus 18 a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~ 96 (524)
T PF05977_consen 18 AQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLA 96 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666 211 1223334567778888888888888888999999999999 7999999999998877666655442
Q ss_pred cccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-
Q 035916 84 KPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI- 160 (506)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i- 160 (506)
.. ...+.+.+++..++.+++.+...|.-.+.+.+..++++ +.++.++.-... +.-++||.+ +.+
T Consensus 97 ~~---~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~----------L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 97 FF---GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED----------LPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred Hh---CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh----------HHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 21 11345677778889999999999999999999885533 456677777777 888888888 665
Q ss_pred --hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCC
Q 035916 161 --KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHS 238 (506)
Q Consensus 161 --~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 238 (506)
.|-...|.+.++..++++..+...++. .+++..|-.+..+-++
T Consensus 164 a~~G~~~~f~inalsfl~~i~~l~~~~~~---~~~~~~~~e~~~~~l~-------------------------------- 208 (524)
T PF05977_consen 164 AFFGAAAAFLINALSFLISILALLRWKPP---PPPSSLPRERFFSALR-------------------------------- 208 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccc---ccccccchhhhhhhHH--------------------------------
Confidence 788889999998877766544433221 1111111000000000
Q ss_pred CCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCce
Q 035916 239 RGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFS 318 (506)
Q Consensus 239 ~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ 318 (506)
+--+ + +.+.|.+..++.. ..+|.....-........+ +..++
T Consensus 209 ------~G~r------------------y----v~~~~~l~~~l~~---~~~~~l~~~a~~aLlPl~a---~~~l~---- 250 (524)
T PF05977_consen 209 ------EGLR------------------Y----VRSSPPLRSVLLR---SFLFNLFASAVWALLPLFA---RDVLG---- 250 (524)
T ss_pred ------HHHH------------------H----HhcchHHHHHHHH---HHHHHHhhhHHHHhhhHHH---HHHhC----
Confidence 0000 0 0001111111111 1111111110011111111 11111
Q ss_pred eChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Q 035916 319 FGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEK 397 (506)
Q Consensus 319 ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~ 397 (506)
..+..+..+.. ..-..-+...++.|.+ +|.. ...+ +..+.++.+++++..++.
T Consensus 251 ~~a~~yGll~a--~~gvGai~Gal~~~~l---~~~~-~~~~lv~~~~~~~a~~~~~lal~-------------------- 304 (524)
T PF05977_consen 251 GGASGYGLLLA--AFGVGAILGALLLPRL---RRRL-SSRRLVLLASLLFALALLLLALS-------------------- 304 (524)
T ss_pred CcHHHHHHHHH--HHHHHHHHHHHHHHHh---hccc-CcchhhHHHHHHHHHHHHHHhcc--------------------
Confidence 12233332222 2223344455555544 4332 2223 666666666655444322
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhc
Q 035916 398 IPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAG 462 (506)
Q Consensus 398 ~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~ 462 (506)
-+.+..++..++.|++.....++....+-+..|+.++|..++++......+..+|+.+.+.+.
T Consensus 305 --~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 305 --PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244556677889999999999999999999999999999999998877776677666655543
No 68
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.37 E-value=2.2e-10 Score=121.44 Aligned_cols=145 Identities=12% Similarity=0.064 Sum_probs=113.2
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..++++ +|.++++.+.+.+.+.....++.+++|+++|| +|||+.+..+.++..++.+++...... ..+...+.+
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 123 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAIMFV 123 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccc----cchHHHHHH
Confidence 456665 59999999999999999999999999999999 799999999999988887776543210 123455677
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILAM 172 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~~ 172 (506)
.+.+.+++.|...|.....+.|.++++ +|....++++... +|..+++.+ +.. .+|+..|.+.++
T Consensus 124 ~~~l~g~~~g~~~~~~~~~i~~~~~~~----------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~ 193 (438)
T TIGR00712 124 LLFLNGWFQGMGWPPCGRTMVHWWSQS----------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAI 193 (438)
T ss_pred HHHHHHHHhhcchHHHHHHHHHhcCcc----------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 788899999998888888888877432 2457788888888 988887765 433 689999998777
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
..++..+
T Consensus 194 ~~~i~~~ 200 (438)
T TIGR00712 194 CAIIVAL 200 (438)
T ss_pred HHHHHHH
Confidence 6655443
No 69
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.37 E-value=5.8e-10 Score=119.79 Aligned_cols=145 Identities=6% Similarity=-0.027 Sum_probs=104.6
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
...+..++.+++|.+.++.+.+...+.....++.+++|+++|| +|||+++..+.++..++.++...+. +..
T Consensus 55 ~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~--------s~~ 125 (476)
T PLN00028 55 AAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVS--------SAT 125 (476)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhc--------CHH
Confidence 3444557788999999999999888888888889999999999 7999999999999888877766652 345
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH------------
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI------------ 160 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i------------ 160 (506)
.+++.+++.++|.+..-+ ....++|.++++ +|.......+... +|..++..+ +.+
T Consensus 126 ~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~----------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~ 194 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVS-CQYWMSTMFNGK----------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSF 194 (476)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHhcChh----------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 667778888888876543 345667666331 2345666665555 666555444 322
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 035916 161 KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 161 ~g~~~~F~i~~~~~~~~~~ 179 (506)
.||+..|.+.++..++..+
T Consensus 195 ~gWr~~f~i~g~l~l~~~l 213 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGI 213 (476)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 2799999987776554443
No 70
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.36 E-value=1.8e-09 Score=113.15 Aligned_cols=137 Identities=7% Similarity=0.012 Sum_probs=101.1
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+..|+ +++|.+.++++.+.+.+.....++.++.|.++|| +||||++..+..+..++.++....+.. ..+...+
T Consensus 35 ~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l 108 (402)
T TIGR00897 35 WLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGLG----HANYPLI 108 (402)
T ss_pred hHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhcc----CccHHHH
Confidence 344566 5689999999999999999999999999999999 799999999999988876544221110 0134556
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHH-HHHHHH-HHH---hhhhHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPN-ILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~-~i~~~~-~~i---~g~~~~F~i 169 (506)
++...+.++|.+..-+...+.+.+.+++ + +|.+..+++..+. +|. .+++.+ +++ .||+..+..
T Consensus 109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~~---~-------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 109 LLFYGIRGLGYPLFAYSFLVWVVYNTKQ---D-------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHHcchHHHHhHHHHHHHHhCCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 6777788888887777777777766533 2 3457788888888 886 578877 665 675444443
No 71
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.35 E-value=1.1e-09 Score=116.91 Aligned_cols=379 Identities=11% Similarity=-0.000 Sum_probs=220.3
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhc---cCchhHHHHHH-HHHHHhhhhhhcccccccc----
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDT---TISKYWMILVS-SFAYTAVIKFLFYDYKPEC---- 87 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~---~lGr~~ti~~~-~~~~~iG~~~l~~~~~~~~---- 87 (506)
+++..|+ +.+|.+...++.+..+......+..++.|+++|| .+||||..+++ .....++..++..+.....
T Consensus 25 ~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~ 103 (477)
T TIGR01301 25 SLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGD 103 (477)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccc
Confidence 5566666 6799999999999999999999999999999996 68999998875 5566667666655432100
Q ss_pred ---cC--CchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 88 ---IG--EGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 88 ---~~--~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.. ........+++.+.-++.....+...++++|..++++. +.+.+++|+.+.. +|+.+++.+ ++.
T Consensus 104 ~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~--------~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 104 NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR--------RTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01113445666677778888888899999999976442 2346899999999 999999988 543
Q ss_pred ------------------hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCcc
Q 035916 161 ------------------KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASE 222 (506)
Q Consensus 161 ------------------~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~ 222 (506)
.+++..|.+.++.++++..+-...-|++...+++..+ ++ .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~------------~~-~--------- 233 (477)
T TIGR01301 176 GLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI------------NS-E--------- 233 (477)
T ss_pred hHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch------------hh-h---------
Confidence 1678889999888888777655544432110100000 00 0
Q ss_pred ccccccCCCCccccCCCCcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhH
Q 035916 223 LYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFL 302 (506)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~ 302 (506)
++++. +.+..+.+ +. . ++ .-.+--|.+.+++.+-...=+=|..+-+..|.|
T Consensus 234 -~~~~~--------~~~~~~~~---~~-------------i---~~-~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~ 284 (477)
T TIGR01301 234 -AAPPS--------KHGEEAFF---GE-------------L---FG-AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDW 284 (477)
T ss_pred -ccccc--------ccchhhhH---HH-------------H---HH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 00000 00000000 00 0 00 001112334455544444444455555566666
Q ss_pred HHHHHHh-cCCCCCCceeC---hhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHH
Q 035916 303 LEQAEVI-NGKDGGNFSFG---PLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVE 378 (506)
Q Consensus 303 ~~q~~~~-d~~~g~~~~ip---~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e 378 (506)
+-|.-.- |.+-...++-- ..+-..+|.+... ++..++.++. ||.+..+.-..++.++.+++++...++.
T Consensus 285 vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~---~~~g~~k~~~~~s~~~~~~~l~~~~~i~ 357 (477)
T TIGR01301 285 MGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLC---RGWGAGKRLWGIVNIILAICLAATVLVT 357 (477)
T ss_pred HHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6543110 10000000000 1122233444433 3333343333 4443111215788888888887776654
Q ss_pred HHHHhhhhhcCCCCCCCCCccch-HHHHHHHHHHHHHHHHhhhhhhHHHhhhccCh--hhHHHHHHHHHHHhHHHHHHHh
Q 035916 379 TRRLDVVRSHGLIDKPDEKIPMS-LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPR--MIFRYLKYIFVATMGVGIIGST 455 (506)
Q Consensus 379 ~~r~~~~~~~g~~~~~~~~~~is-~~wli~~y~l~~igE~l~~~~~lef~~~~aP~--~mks~~~gl~~l~~aiG~~l~~ 455 (506)
....+..+.++. +..-..+.. .++.+..+.+.|++-......=++.+.+..|+ +-+|..||+..++.-+...+.+
T Consensus 358 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~s 435 (477)
T TIGR01301 358 YVAKNSRYYDGD--GESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVS 435 (477)
T ss_pred hhhhcccccccc--ccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHH
Confidence 210000000000 000011222 36677788999999999999999999999995 4559999999999999999988
Q ss_pred hhhhhhcc
Q 035916 456 LSVYYAGI 463 (506)
Q Consensus 456 ~l~~~~~~ 463 (506)
+....+..
T Consensus 436 l~~g~~~~ 443 (477)
T TIGR01301 436 LGSGPWDQ 443 (477)
T ss_pred HHHHHHHH
Confidence 76665433
No 72
>PRK09952 shikimate transporter; Provisional
Probab=99.35 E-value=2.2e-09 Score=113.94 Aligned_cols=121 Identities=16% Similarity=0.188 Sum_probs=86.4
Q ss_pred HhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhccccc
Q 035916 45 HVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATN 124 (506)
Q Consensus 45 ~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~ 124 (506)
-++.++.|+++|| +|||+++..+..+..++.++.+++.............+.+.+.+.++|.|+.-|...+++.|.+++
T Consensus 78 ~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 156 (438)
T PRK09952 78 PLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK 156 (438)
T ss_pred hhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC
Confidence 3556677999999 799999999999999998887776321000000112477789999999999999999999987643
Q ss_pred CCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-----------hhhhHHHHHHHHHHHH
Q 035916 125 FREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-----------KSWKIKFGILAMFTTV 176 (506)
Q Consensus 125 ~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-----------~g~~~~F~i~~~~~~~ 176 (506)
+ +|....+....+. +|.+++..+ ..+ .|||..|.+.++..++
T Consensus 157 ~----------~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~ 211 (438)
T PRK09952 157 N----------KKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI 211 (438)
T ss_pred C----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence 2 2335566667777 888777554 332 5899999987765433
No 73
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.34 E-value=2.8e-09 Score=114.82 Aligned_cols=127 Identities=15% Similarity=0.130 Sum_probs=90.4
Q ss_pred HHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhh
Q 035916 38 NIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRF 117 (506)
Q Consensus 38 ~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~ 117 (506)
++.....-+++++.|+++|| +|||+++.++.+++.++.++.+++....-........+.+.+++.++|.|+.-|+..++
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 34444555788999999999 79999999999999999988877632100000011247888999999999999999999
Q ss_pred hhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-----------hhhhHHHHHHHHHHH
Q 035916 118 IADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-----------KSWKIKFGILAMFTT 175 (506)
Q Consensus 118 ~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-----------~g~~~~F~i~~~~~~ 175 (506)
++|.++++ +|.....+...+. +|..++..+ ..+ .|||+.|.+.++..+
T Consensus 143 ~~e~~p~~----------~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 143 VAEYSPDR----------KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred HHHhCCCC----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 99887442 2335566666666 777766544 221 589999999765443
No 74
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.33 E-value=3.4e-10 Score=116.19 Aligned_cols=134 Identities=13% Similarity=0.008 Sum_probs=103.7
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
|+++++|.+..+.+.+.+.+.....++++++|+++|| +|||+++.++..+..++.+++..+. .+.+.++++.
T Consensus 27 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~ 98 (366)
T TIGR00886 27 MIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAV-------QSYSVLLLLR 98 (366)
T ss_pred HHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHH
Confidence 6889999999999999999999999999999999999 7999999999999999988777652 0456777888
Q ss_pred HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-------------hhhhH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-------------KSWKI 165 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-------------~g~~~ 165 (506)
.+.+++.+.. +...++++|.++++ +|....+++.... +|..+++.+ +.+ .+|++
T Consensus 99 ~~~g~~~~~~-~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~ 167 (366)
T TIGR00886 99 LFIGIAGGSF-ASCMPWISFFFPKK----------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGW 167 (366)
T ss_pred HHHHHhchhh-HhHHHHHHHhcCHh----------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 8899987665 44677888877432 2346677777666 777666655 443 17999
Q ss_pred HH-HHHHHH
Q 035916 166 KF-GILAMF 173 (506)
Q Consensus 166 ~F-~i~~~~ 173 (506)
.| .+.++.
T Consensus 168 ~~~~~~~~~ 176 (366)
T TIGR00886 168 AFVIVPAGI 176 (366)
T ss_pred hhHHHHHHH
Confidence 98 443433
No 75
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.33 E-value=9e-10 Score=117.86 Aligned_cols=144 Identities=13% Similarity=-0.025 Sum_probs=109.8
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
...+.+++|.+.++.+.+.+++....-++.+++|+++|| +||||.+..+.++..++.+.++..... ...+...+++
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 127 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGS---GSVSLGLMIA 127 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhc---ccchHHHHHH
Confidence 445678899999999999999998888999999999999 799999988888777766555542100 0135677888
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---h---hhhHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---K---SWKIKFGIL 170 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~---g~~~~F~i~ 170 (506)
.+.+.+++.|..-|...+.++|.+++++ |....+++-.+. +|..++..+ .++ . +|+..|.+.
T Consensus 128 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~----------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~ 197 (467)
T PRK09556 128 LWALSGFFQSTGGPCSYSTITRWTPRRK----------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP 197 (467)
T ss_pred HHHHHHHHHhccchHHHHHHHHHcCccc----------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence 8999999999999999999998885432 235567777777 888888777 544 1 588888876
Q ss_pred HHHHHH
Q 035916 171 AMFTTV 176 (506)
Q Consensus 171 ~~~~~~ 176 (506)
++..++
T Consensus 198 g~~~~~ 203 (467)
T PRK09556 198 SIIALI 203 (467)
T ss_pred HHHHHH
Confidence 655443
No 76
>PRK10133 L-fucose transporter; Provisional
Probab=99.32 E-value=1.3e-09 Score=115.93 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=98.6
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+...+.+++|.+..+++.+...+.....++.++.|.++|| +||||++..+..++.+|.++...... ..+...+
T Consensus 47 ~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~-----a~~~~~l 120 (438)
T PRK10133 47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAE-----IMNYTLF 120 (438)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHh-----cCCHHHH
Confidence 34456678999999999999999999999999999999999 79999999999999999876532111 1256788
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF 157 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~ 157 (506)
.+++++.++|.|...+..+++++|..++ + + +....+.+.... +|..+++.+
T Consensus 121 l~~r~l~G~g~g~~~~~~~~~v~~~~~~-~--~-------~~~~~s~~~~~~~~G~~~g~~~ 172 (438)
T PRK10133 121 LVGLFIIAAGLGCLETAANPFVTVLGPE-S--S-------GHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCh-h--h-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999874322 1 1 122356666666 777777766
No 77
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.32 E-value=3.8e-09 Score=114.17 Aligned_cols=149 Identities=11% Similarity=-0.009 Sum_probs=111.4
Q ss_pred cChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhh
Q 035916 27 MISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFG 106 (506)
Q Consensus 27 ~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G 106 (506)
+.+..+.+.+.+.+.....++.++.|+++|| +|||+++.++.+++.++.++...+... ....+...+++++++.++|
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~r~l~G~~ 128 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGS--SPKSVMATLCFWRFWLGVG 128 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCc--ccchHHHHHHHHHHHHHHH
Confidence 4556677888888998899999999999999 799999999999999988776654210 0001246788999999999
Q ss_pred cccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH------------------------
Q 035916 107 ISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI------------------------ 160 (506)
Q Consensus 107 ~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i------------------------ 160 (506)
.|+.-|....+..+.++.+ .|.+..++++... +|.++++.+ ..+
T Consensus 129 ~g~~~~~~~~~~~e~~p~~----------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (502)
T TIGR00887 129 IGGDYPLSAIITSEFATKK----------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPA 198 (502)
T ss_pred HhhhhHHHHHHHHHhcChh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccch
Confidence 9999999999999877442 2457788888888 988888776 322
Q ss_pred --hhhhHHHHHHHHHHHHHHHH--HHhcCcce
Q 035916 161 --KSWKIKFGILAMFTTVSTLV--FLSGSSSY 188 (506)
Q Consensus 161 --~g~~~~F~i~~~~~~~~~~~--f~~~~~~~ 188 (506)
.+||+.|.+.++..++..+. ++..+++|
T Consensus 199 ~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~ 230 (502)
T TIGR00887 199 VDYMWRILIGFGAVPALLALYFRLTIPETPRY 230 (502)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 16999998777665544332 34444444
No 78
>PRK15075 citrate-proton symporter; Provisional
Probab=99.30 E-value=1.8e-09 Score=114.38 Aligned_cols=146 Identities=13% Similarity=0.149 Sum_probs=96.4
Q ss_pred hHHHHHHhhhccChhHHHHHHH-HHHHH-HHH----hHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccC
Q 035916 16 WMMMDYLTEVWMISFVHAAGIV-NIFWG-TAH----VLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIG 89 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~-~~~~~-~~~----~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~ 89 (506)
......+.++++.++.+.+... +.... ..+ ++.++.|+++|| +||||.+..+..+..++.++..++.......
T Consensus 35 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~ 113 (434)
T PRK15075 35 GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATIG 113 (434)
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445566778888777654443 32222 222 457888999999 7999999999999999988887763110000
Q ss_pred CchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HH--------
Q 035916 90 EGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LF-------- 159 (506)
Q Consensus 90 ~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~-------- 159 (506)
......+.+++++.++|.|..-|+..++.+|.++++ +|.+..+++.... +|..+++.+ ..
T Consensus 114 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~----------~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~ 183 (434)
T PRK15075 114 LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG----------RKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPA 183 (434)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 000114678899999999999999999999888442 2345566655544 554444443 21
Q ss_pred -H--hhhhHHHHHHHH
Q 035916 160 -I--KSWKIKFGILAM 172 (506)
Q Consensus 160 -i--~g~~~~F~i~~~ 172 (506)
. .||+..|.+..+
T Consensus 184 ~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 184 QMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHhccchHHHHHHHHH
Confidence 1 689999987544
No 79
>PRK09848 glucuronide transporter; Provisional
Probab=99.29 E-value=3.4e-09 Score=112.67 Aligned_cols=120 Identities=12% Similarity=0.112 Sum_probs=81.1
Q ss_pred cchhhhhhh-hc-----------hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc---CchhHHH-HH
Q 035916 4 LSWSDVFVA-FV-----------FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT---ISKYWMI-LV 67 (506)
Q Consensus 4 ~~~~~~fs~-yg-----------~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~---lGr~~ti-~~ 67 (506)
+.|.++++| .| .+.+..|+++.+|++..+++.+.........+..++.|+++||. +||||.. .+
T Consensus 5 ~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~ 84 (448)
T PRK09848 5 LSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLF 84 (448)
T ss_pred ccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHH
Confidence 556677665 11 13456799999999999999999999999999999999999994 5888855 55
Q ss_pred HHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhccccc
Q 035916 68 SSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATN 124 (506)
Q Consensus 68 ~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~ 124 (506)
+.+...+..+++..... ...........+....+.+++.+...+...++..+.-++
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 140 (448)
T PRK09848 85 GTAPLMIFSVLVFWVPT-DWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQ 140 (448)
T ss_pred HHHHHHHHHHHHHhCcC-CCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCC
Confidence 65555544444321110 000112233344455667888888988888886655544
No 80
>PRK09669 putative symporter YagG; Provisional
Probab=99.29 E-value=1.5e-09 Score=115.31 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=107.2
Q ss_pred cchhhhhhhhc-----------h-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc---CchhHH-HHH
Q 035916 4 LSWSDVFVAFV-----------F-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT---ISKYWM-ILV 67 (506)
Q Consensus 4 ~~~~~~fs~yg-----------~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~---lGr~~t-i~~ 67 (506)
+.|+++++|-. . ..+..|+++.+|.+.+.++.+..+.....-+..++.|+++||. +||||- ++.
T Consensus 6 l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~ 85 (444)
T PRK09669 6 LTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLW 85 (444)
T ss_pred ccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHH
Confidence 56778877521 1 2345788899999999999999999999999999999999993 688665 446
Q ss_pred HHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHH
Q 035916 68 SSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLS 147 (506)
Q Consensus 68 ~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~ 147 (506)
+.+...+..+++... |+.+...+...+++...+..++..++.....++.+|..++ ++| |.+..+|....
T Consensus 86 ~~~~~~i~~~l~f~~--p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~--~~e-------R~~l~~~r~~~ 154 (444)
T PRK09669 86 FAIPFGVVCLLTFYT--PDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITND--PRE-------RHSLQSWRFAL 154 (444)
T ss_pred HHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCC--HHH-------HHHHHHHHHHH
Confidence 666676665544433 2211122333344444455555556777778888876644 333 34677887777
Q ss_pred H-HHHHHHHHH-H-HH---------hhhhHHHHHHHHHHHHHH
Q 035916 148 L-VPNILSIAF-L-FI---------KSWKIKFGILAMFTTVST 178 (506)
Q Consensus 148 i-iG~~i~~~~-~-~i---------~g~~~~F~i~~~~~~~~~ 178 (506)
. +|..++..+ . .+ .||+..+.+.++...+..
T Consensus 155 ~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~ 197 (444)
T PRK09669 155 SFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLF 197 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence 7 888777655 2 22 256666665555544433
No 81
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.25 E-value=8.7e-10 Score=117.46 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=119.1
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
++++++..+.+.+.+++.-+..++.+.+|+++|| +|-|+++..+.++..++.++..+++.- ....+.+.+++.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~~~~~~R~lq 138 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASI------GFYLLLVLRFLQ 138 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHh------cchhhHHHHHHh
Confidence 3688999999999999999999999999999999 799999999999999999999988642 334678899999
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHHHHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILAMFTTVS 177 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~~~~~~~ 177 (506)
|++.|...|++..+.+.-.+ ++| |..+.+..+-.. +|.+++.-+ +++ .||+..|.+.++.-++-
T Consensus 139 Gl~~g~~~pa~~~i~~~W~P---~~E-------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~ 208 (466)
T KOG2532|consen 139 GLGQGVLFPAIGSILAKWAP---PNE-------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIW 208 (466)
T ss_pred HHHHhHHHhhhhceeeeECC---HHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHH
Confidence 99999999999999886552 333 458899999999 999999877 887 79999999877665544
Q ss_pred HHHH
Q 035916 178 TLVF 181 (506)
Q Consensus 178 ~~~f 181 (506)
.+++
T Consensus 209 ~~~w 212 (466)
T KOG2532|consen 209 FILW 212 (466)
T ss_pred HHHH
Confidence 4444
No 82
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.24 E-value=2.3e-08 Score=103.17 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=119.3
Q ss_pred HhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHH
Q 035916 22 LTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALG 101 (506)
Q Consensus 22 l~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~ 101 (506)
+.+++|.|..+++..++.|....-++.++-..+.|| +.||+.++....++.+|.++-+++ .+...+.++++
T Consensus 39 iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alA--------p~f~~Ll~aR~ 109 (394)
T COG2814 39 IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALA--------PSFAVLLLARA 109 (394)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHH
Confidence 346899999999999999999999999999999999 899999999999999999998888 36789999999
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTV 176 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~ 176 (506)
+.++..|.+-+...+..+|..++++ +.+....-+... +...+|.=+ .++ .|||..|.+-++.-++
T Consensus 110 ~~g~a~G~f~~i~~~~a~~lvpp~~----------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll 179 (394)
T COG2814 110 LAGLAHGVFWSIAAALAARLVPPGK----------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALL 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccc----------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999885533 346677766666 666666544 555 9999999976666555
Q ss_pred HHHHHHh
Q 035916 177 STLVFLS 183 (506)
Q Consensus 177 ~~~~f~~ 183 (506)
.++....
T Consensus 180 ~~~~~~~ 186 (394)
T COG2814 180 ALLLLWK 186 (394)
T ss_pred HHHHHHH
Confidence 5544433
No 83
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.23 E-value=4.9e-09 Score=110.47 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=103.9
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+...+.+++|.+..+++.+.+.+.....+++++.|++.|| +|||+++.++..+..+|.++...++. ..+.+.+
T Consensus 24 ~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~-----~~~~~~~ 97 (410)
T TIGR00885 24 PMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAE-----IMNYTLF 97 (410)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHh-----hccHHHH
Confidence 34567788999999999999999999999999999999999 79999999999999999877544321 1246778
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.+++++.++|.|...+..++++.+..++++ +.+..+...... +|..+++.+ +.+
T Consensus 98 l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~lG~~~g~~i~~~l 153 (410)
T TIGR00885 98 LVGLFILTAGLGFLETAANPYILVMGPEST----------ATRRLNLAQSFNPFGSIIGMVVAQQL 153 (410)
T ss_pred HHHHHHHHhhHHHHHhhhhHHHHHHCCHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999987653322 224467777778 888888887 544
No 84
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.22 E-value=1.4e-09 Score=114.90 Aligned_cols=336 Identities=13% Similarity=0.091 Sum_probs=208.5
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhc---cCchhHHHH-HHHHHHHhhhhhhcccccc-cccCCc
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDT---TISKYWMIL-VSSFAYTAVIKFLFYDYKP-ECIGEG 91 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~---~lGr~~ti~-~~~~~~~iG~~~l~~~~~~-~~~~~~ 91 (506)
.+..|+++.+|.+...++.+........-+..++-|+++|| .+||||-.+ +|.+...++.+++.... | ..+...
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~-p~~~~~~~ 101 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP-PAGLSFTA 101 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc-cchhhhhh
Confidence 46778899999999999999999999999999999999993 489887654 67788888877776441 2 000111
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---------
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--------- 160 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--------- 160 (506)
+...+.+...+..++...+.-+..+++.|..++.+ | |.+..++-.... +|.++...+ +.+
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~-------R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~ 172 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E-------RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT 172 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h-------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc
Confidence 23334556666789999999999999999876544 2 336667766777 888655555 333
Q ss_pred h-hhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCC
Q 035916 161 K-SWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSR 239 (506)
Q Consensus 161 ~-g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (506)
. +|+....+.++...+...+.....|+ ++++++ + ..+
T Consensus 173 ~~~~~~~~~v~~iv~~v~~~i~~~~~ke-~~~~~~-~----------------------------------------~~~ 210 (428)
T PF13347_consen 173 SNGYRWMALVLAIVGLVFFLITFFFVKE-RSVEVT-E----------------------------------------QEK 210 (428)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhheeee-cccccc-c----------------------------------------ccc
Confidence 1 68887777666666655555444332 000000 0 000
Q ss_pred CcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHH-hcCCCCCCce
Q 035916 240 GLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEV-INGKDGGNFS 318 (506)
Q Consensus 240 ~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~-~d~~~g~~~~ 318 (506)
..++.+..+. ++ ++ |.+ ..++....+.+....-..+......+. ++.+ +
T Consensus 211 ~~~~~~~~~~----------------~~-----~n-r~~---~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~---- 260 (428)
T PF13347_consen 211 KISLRDSLRS----------------LF-----RN-RPF---RILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G---- 260 (428)
T ss_pred ccccccchhh----------------hc-----cc-chH---HHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h----
Confidence 0000010000 00 01 111 223333444444444433333322211 1111 1
Q ss_pred eChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCc
Q 035916 319 FGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKI 398 (506)
Q Consensus 319 ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~ 398 (506)
-.+.+.....+..++..|+..++. ||.+++. .+..|.++.+++.+...++.
T Consensus 261 -~~~~~~~~~~~~~~v~~~~~~~l~-------~r~gk~~-~~~~~~~~~~~~~~~~~~~~-------------------- 311 (428)
T PF13347_consen 261 -LISIFMLIFFVASIVGSPLWGRLS-------KRFGKKK-VYIIGLLLAALGFLLLFFLG-------------------- 311 (428)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHH-------HHcccee-ehhhhHHHHHHHHHHHHHHH--------------------
Confidence 112333455566667777776665 5554222 27778887777776655542
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccC-------hhhHHHHHHHHHHHhHHHHHHHhhhhhhhcc
Q 035916 399 PMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFP-------RMIFRYLKYIFVATMGVGIIGSTLSVYYAGI 463 (506)
Q Consensus 399 ~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP-------~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~ 463 (506)
+-+.+|.++..++.+++-....+.......+..+ ++..|..+|++.+..-+|..+++.+...+-.
T Consensus 312 ~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 312 PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 1467788888899999998888888888887766 4668999999999999999988887776543
No 85
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.21 E-value=4.9e-08 Score=102.29 Aligned_cols=146 Identities=12% Similarity=0.067 Sum_probs=106.2
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc----CchhH-HHHHHHHHHHhhhhhhcccccccccCC
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT----ISKYW-MILVSSFAYTAVIKFLFYDYKPECIGE 90 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~----lGr~~-ti~~~~~~~~iG~~~l~~~~~~~~~~~ 90 (506)
..+..|+++ .|+|.++-+.+...... ++..++.|.++||+ +|||| .+..+.....++...+.+... .
T Consensus 20 ~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~-----~ 91 (402)
T PRK11902 20 GTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP-----H 91 (402)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc-----c
Confidence 456678875 49999999988555553 78999999999994 28877 577777778777776665421 1
Q ss_pred chHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhh
Q 035916 91 GQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWK 164 (506)
Q Consensus 91 ~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~ 164 (506)
.+.+.+++...+.+...+...|...++..|..+++ +|.++..+..++. +|.+++..+ .++ .||+
T Consensus 92 ~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~----------~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~ 161 (402)
T PRK11902 92 AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE----------ERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWG 161 (402)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh----------hhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHH
Confidence 24455555555677888899999999999876432 2346677777888 888888777 555 4899
Q ss_pred HHHHHHHHHHHHHHH
Q 035916 165 IKFGILAMFTTVSTL 179 (506)
Q Consensus 165 ~~F~i~~~~~~~~~~ 179 (506)
..|.+.++..++..+
T Consensus 162 ~~f~i~a~~~l~~~l 176 (402)
T PRK11902 162 NTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999987776655444
No 86
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.17 E-value=4.9e-08 Score=105.35 Aligned_cols=144 Identities=16% Similarity=0.134 Sum_probs=102.7
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc----CchhHH-HHHHHHHHHhhhhhhcccccccccCCch
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT----ISKYWM-ILVSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~----lGr~~t-i~~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
+..|++ +.|.+.++.+.. ...+..+.+.++-|.++||+ +||||. +..+.+...++...++... | ..+
T Consensus 35 l~~~l~-~~g~~~~~ig~~--~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~-~----~~~ 106 (491)
T PRK11010 35 LQAWMT-VENIDLKTIGFF--SLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE-P----GTQ 106 (491)
T ss_pred HHHHHH-hCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC-C----cch
Confidence 444543 357887777775 33444567899999999993 299996 5677777767766665432 1 134
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIK 166 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~ 166 (506)
.+.+....++.+++.+...+...++..|.++++ +|.+..++.-.+. +|.+++..+ .++ .||+..
T Consensus 107 l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~----------~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~ 176 (491)
T PRK11010 107 LRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE----------ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM 176 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 566777778889999999999999999987532 2346677777778 888888877 555 489999
Q ss_pred HHHHHHHHHHHHH
Q 035916 167 FGILAMFTTVSTL 179 (506)
Q Consensus 167 F~i~~~~~~~~~~ 179 (506)
|.+.++..++..+
T Consensus 177 f~i~a~l~ll~~l 189 (491)
T PRK11010 177 YWLMAALLIPCII 189 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 9988776665544
No 87
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.6e-10 Score=119.28 Aligned_cols=141 Identities=17% Similarity=0.193 Sum_probs=121.7
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
+.+|.++...+.+-..|.....+++++.|+++|| .-|++.+.+|..+..+..+.-..+ ...+++.+.+.+.
T Consensus 61 ~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs--------~~Fwq~~l~R~~v 131 (493)
T KOG1330|consen 61 TYFNISDSELGLLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFS--------NHFWQVLLCRGFV 131 (493)
T ss_pred HhcCCCchhccchhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHH--------HHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999 599999999999998887776665 3678999999999
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHHHHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILAMFTTVS 177 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~~~~~~~ 177 (506)
|+|-+...|..+++++|.++++ +|.+.|.||||++ +|+.+|..+ +++ ..||++|...++..++.
T Consensus 132 GiGeAs~~~ia~s~IaD~f~~~----------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~ 201 (493)
T KOG1330|consen 132 GIGEASYSPIAPSLIADSFPDD----------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIV 201 (493)
T ss_pred ccchhhhcccchhHhhhcCcch----------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHH
Confidence 9999999999999999999653 3568899999999 999999988 777 44999999877775554
Q ss_pred HH-HHHh
Q 035916 178 TL-VFLS 183 (506)
Q Consensus 178 ~~-~f~~ 183 (506)
.+ +++.
T Consensus 202 ~~L~~~f 208 (493)
T KOG1330|consen 202 GLLVFLF 208 (493)
T ss_pred HHHHHhh
Confidence 44 4443
No 88
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.17 E-value=3.1e-08 Score=103.98 Aligned_cols=99 Identities=15% Similarity=0.019 Sum_probs=71.7
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+++ .|+|..+.+.+.+.......+.|++-|++|||+..++|.+.+..++..+........ .+.+.
T Consensus 23 p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~--------~~f~~ 93 (400)
T PF03825_consen 23 PYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS--------SSFWW 93 (400)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh--------ccHHH
Confidence 667788865 679999999999999999999999999999997677888877666665544333332 23344
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccc
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQAT 123 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~ 123 (506)
++..+++..+.....-|..++..-+..+
T Consensus 94 ~~~~~~l~~~~~~p~~pl~dsi~~~~~~ 121 (400)
T PF03825_consen 94 LFVIMLLFSFFFSPTMPLSDSIALSYLG 121 (400)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 5555666676666666666666665443
No 89
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.17 E-value=3.2e-08 Score=106.21 Aligned_cols=130 Identities=14% Similarity=0.153 Sum_probs=88.8
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhc---cCchhH-HHHHHHHHHHhhhhhhcccccccccCCch
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDT---TISKYW-MILVSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~---~lGr~~-ti~~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
.+..|+++.+|.+...++.+........-+..++.|+++|| .+|||| -++++.+...++..++... |...+...
T Consensus 28 ~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~--p~~~~~~~ 105 (473)
T PRK10429 28 YLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA--HLFEGTAQ 105 (473)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC--CCCCccHH
Confidence 36678899999999999999999999999999999999995 269955 4556777777776666433 21111112
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF 157 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~ 157 (506)
...+.+...+..++...+.....++++|.-++ ++| |.+.++|-.... +|.++...+
T Consensus 106 ~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~--~~e-------R~~l~~~~~~~~~ig~~~~~~~ 162 (473)
T PRK10429 106 YVFVCVTYILWGMTYTIMDIPFWSLVPTLTLD--KRE-------REQLVPYPRFFASLAGFVTAGF 162 (473)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHhhhHHhCCC--HHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556777788888888998876644 333 346677755555 665444333
No 90
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.15 E-value=2e-08 Score=106.56 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccc
Q 035916 33 AAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMG 112 (506)
Q Consensus 33 a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~ 112 (506)
-+.++++|..+..++++.+|+++|| +|||++++++.++..++.+++..+... ....++.+|+++.|+..|....
T Consensus 62 wS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~-----~~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 62 WSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSA-----PSFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHhHHHHH
Confidence 4567788888888999999999999 799999999999988887776665432 3456889999999999999999
Q ss_pred cchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH--HHH----hhhhHHHHHHHHHHHHHHH--HHHh
Q 035916 113 SIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF--LFI----KSWKIKFGILAMFTTVSTL--VFLS 183 (506)
Q Consensus 113 ~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~--~~i----~g~~~~F~i~~~~~~~~~~--~f~~ 183 (506)
..+-++. |..|++-| ...=...-.++ +|.+++..+ +.+ -.|++.++.+.+..++.++ .++.
T Consensus 136 ~~pmyl~----E~sP~~~R------G~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~P 205 (485)
T KOG0569|consen 136 LVPMYLT----EISPKNLR------GALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLP 205 (485)
T ss_pred HHHHHHh----hcChhhhc------cHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999 66676543 33334445677 999999666 666 6699999988876665554 4455
Q ss_pred cCcceee
Q 035916 184 GSSSYRR 190 (506)
Q Consensus 184 ~~~~~~~ 190 (506)
.+|+|..
T Consensus 206 ESPk~Ll 212 (485)
T KOG0569|consen 206 ESPKYLL 212 (485)
T ss_pred CCcchHH
Confidence 6666643
No 91
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.11 E-value=7e-09 Score=114.79 Aligned_cols=313 Identities=10% Similarity=-0.068 Sum_probs=234.0
Q ss_pred ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHh
Q 035916 26 WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAF 105 (506)
Q Consensus 26 l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~ 105 (506)
.+...-.++...+.+....+++++.+...||-..|+..++..-...+.++.+.+.+.+.+...+.........+++.+++
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL 94 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL 94 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH
Confidence 44455678889999999999999999999999999999999999999999988888765432122223445668888999
Q ss_pred hcccccccchhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHH-HHHhhhhH-----------HHHHHHHH
Q 035916 106 GISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAF-LFIKSWKI-----------KFGILAMF 173 (506)
Q Consensus 106 G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~iiG~~i~~~~-~~i~g~~~-----------~F~i~~~~ 173 (506)
+.++.+++.+++.++|.+..+++ ++++.+++|||...+.-+|.++ ..+.+|-- -++..++.
T Consensus 95 ia~G~GgiKp~vsaf~gdqf~~~-------~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~ 167 (654)
T TIGR00926 95 IALGTGGIKPCVSAFGGDQFEER-------QLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP 167 (654)
T ss_pred HHhhccccccCchhhhHhhcCcc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence 99999999999999999776642 7788999999998999888877 66677754 22366677
Q ss_pred HHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhhhcCc
Q 035916 174 TTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPN 253 (506)
Q Consensus 174 ~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~ 253 (506)
+++.++.++.....+++.+|.+.+-..+.+++......++.+ .... +..
T Consensus 168 ~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~-------------------~~~~------~~~------ 216 (654)
T TIGR00926 168 AILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR-------------------FSTR------SEH------ 216 (654)
T ss_pred HHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh-------------------hccC------Ccc------
Confidence 778888888888777777776666555666655544332100 0000 000
Q ss_pred ccccccccCcccc--cccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhHHH
Q 035916 254 KTLRQQERNRWRL--CSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYIS 331 (506)
Q Consensus 254 ~~~~~~~~~~~~~--~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~i~ 331 (506)
....|-. ..+.++++++...+++.++...+.+|+.+.|....+..|..++++..+ .+...+...+.++++-
T Consensus 217 ------~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~-~l~g~~ip~~~lq~~n 289 (654)
T TIGR00926 217 ------WPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG-DVGGFEIQPDQMQVVN 289 (654)
T ss_pred ------cchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-ccCCEecCHHHHHHHH
Confidence 0011211 233446789999999999999999999999999999999999998876 6667778899999999
Q ss_pred HhHhhhhhhhhhhccccccccccccccchh---HhHHHHHHHHHHHHHHHHHHHhhhh
Q 035916 332 KGRFTAFYEGFVGHLTSVGWNAVAHVVGFA---MSMILSILCCVTAAIVETRRLDVVR 386 (506)
Q Consensus 332 iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig---~G~~l~~ls~~~~~~~e~~r~~~~~ 386 (506)
.++++|+...+-+|+. .+.++...... -+.+.++++.+.+++++..+.+.-+
T Consensus 290 ~L~IIil~Pi~~~~ly---p~l~~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~ 344 (654)
T TIGR00926 290 PLLILIFVPIFDYIVY---PAIAKCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVNP 344 (654)
T ss_pred HHHHHHhHHHHHHhHH---HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998 77643323344 2556667777777888877665433
No 92
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.09 E-value=2.6e-08 Score=106.87 Aligned_cols=146 Identities=13% Similarity=0.045 Sum_probs=107.8
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCc-----hhHHHHHHHHHH-HhhhhhhcccccccccCC
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTIS-----KYWMILVSSFAY-TAVIKFLFYDYKPECIGE 90 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lG-----r~~ti~~~~~~~-~iG~~~l~~~~~~~~~~~ 90 (506)
.+..++++++|.+.++.+...+.......+-|+ .|.++|| ++ ||+-++++.++. .++...++.. +
T Consensus 47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~--~----- 117 (468)
T TIGR00788 47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGK--V----- 117 (468)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccc--c-----
Confidence 345677788999999998887777666665555 9999999 57 777788887776 3444333322 1
Q ss_pred chHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhH
Q 035916 91 GQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKI 165 (506)
Q Consensus 91 ~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~ 165 (506)
.........+.+.+++.+.......++..|+.+ ++++ ......++.|.+. +|.+++..+ +++ .||+.
T Consensus 118 ~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~-------~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~ 189 (468)
T TIGR00788 118 SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS-------AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRI 189 (468)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC-------cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 122333346788999999999999999999997 3332 2345678899999 999999998 777 69999
Q ss_pred HHHHHHHHHHHHHH
Q 035916 166 KFGILAMFTTVSTL 179 (506)
Q Consensus 166 ~F~i~~~~~~~~~~ 179 (506)
.|.+.++..++...
T Consensus 190 ~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 190 LFLITAALLLLQLF 203 (468)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877766643
No 93
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.96 E-value=2.6e-07 Score=100.27 Aligned_cols=164 Identities=16% Similarity=0.170 Sum_probs=121.1
Q ss_pred chhhhhhh---hc-hhHHHHHHhhh-----ccChh--HHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHH
Q 035916 5 SWSDVFVA---FV-FWMMMDYLTEV-----WMISF--VHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYT 73 (506)
Q Consensus 5 ~~~~~fs~---yg-~~~l~~yl~~~-----l~~~~--~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~ 73 (506)
+++-.|+| .| .+....++.+. ...+. .+-+++.+.+...+.++.++.|.++|+ +|||++++++.+++.
T Consensus 52 ~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~ 130 (513)
T KOG0254|consen 52 LGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFL 130 (513)
T ss_pred HHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH
Confidence 46667777 45 34444444432 22222 344899999999999999999999999 899999999999999
Q ss_pred hhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHH
Q 035916 74 AVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNI 152 (506)
Q Consensus 74 iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~ 152 (506)
+|.++...+. +...+.+|+++.++|.|+..-.++.+++|.- |.+ .|...-+.+.+++ +|.+
T Consensus 131 iG~ii~~~a~--------~~~~l~~GR~l~G~g~G~~~~~~piy~sEia----p~~------~RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 131 IGAIIIALAP--------SWYQLIVGRILTGLGVGGASVLAPVYISEIA----PAH------IRGTLVSLYQLFITIGIL 192 (513)
T ss_pred HHHHHHHHhh--------hHHHHHHHHHHhccchhhhhhcchhhHhhcC----Chh------hhHHHHHHHHHHHHHHHH
Confidence 9999998873 6788999999999999999988888888643 322 3557778888889 9999
Q ss_pred HHHHHHHH---h--hhhHHHHHHHHH---HHHHHHHHHhcCcce
Q 035916 153 LSIAFLFI---K--SWKIKFGILAMF---TTVSTLVFLSGSSSY 188 (506)
Q Consensus 153 i~~~~~~i---~--g~~~~F~i~~~~---~~~~~~~f~~~~~~~ 188 (506)
++..+++. . +||..+.+..+. +.++ ..+...++++
T Consensus 193 ~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~ 235 (513)
T KOG0254|consen 193 LGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRW 235 (513)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHH
Confidence 99777444 2 899888764443 3333 3333444444
No 94
>PRK11462 putative transporter; Provisional
Probab=98.94 E-value=1.6e-06 Score=92.86 Aligned_cols=143 Identities=12% Similarity=0.092 Sum_probs=101.9
Q ss_pred cchhhhhhhhc-----------h-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhc---cCchhHHHH-H
Q 035916 4 LSWSDVFVAFV-----------F-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDT---TISKYWMIL-V 67 (506)
Q Consensus 4 ~~~~~~fs~yg-----------~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~---~lGr~~ti~-~ 67 (506)
+.|.++++|=. . ..+..|.++.+|.+.+.++.+...--.+--+.-++-|+++|| .+||||--+ +
T Consensus 6 l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~ 85 (460)
T PRK11462 6 LSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLF 85 (460)
T ss_pred ccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhH
Confidence 56777777521 1 235678889999999999999999999999999999999998 589987765 4
Q ss_pred HHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHH
Q 035916 68 SSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLS 147 (506)
Q Consensus 68 ~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~ 147 (506)
|.+...++.+++... |+.+.......+++...+..++..+..-...++.++.-+| ++| |.+..+|.-..
T Consensus 86 g~i~~~i~~~llf~~--p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d--~~e-------Rt~l~s~r~~~ 154 (460)
T PRK11462 86 GALPFGIVCVLAYST--PDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITND--PTQ-------RISLQSWRFVL 154 (460)
T ss_pred HHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCC--HHH-------HHHHHHHHHHH
Confidence 667777777666543 3211122233334444456777777777888888876654 433 45778888888
Q ss_pred H-HHHHHHHHH
Q 035916 148 L-VPNILSIAF 157 (506)
Q Consensus 148 i-iG~~i~~~~ 157 (506)
. +|.++++.+
T Consensus 155 ~~iG~~~~~~~ 165 (460)
T PRK11462 155 ATAGGMLSTVL 165 (460)
T ss_pred HHHHHHHHHHH
Confidence 8 888777666
No 95
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.88 E-value=9.6e-07 Score=96.20 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=104.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
++...++.+++|-+ ....++..++....-...++.|-++|. +|||+.++.+.+++.+|.++.+.+ .+...
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA--------~~~~~ 133 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATA--------QNMNT 133 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcC--------CcHHH
Confidence 44446777888875 566778888888888888999999999 899999999999999999988866 35677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+..|..+.++|.|... .....++|..+++. |...+.+..+.. +...+++.+ ..+ .+||+.|.+.
T Consensus 134 ~iag~~l~GvgaG~~~-~~~~~isEl~p~k~----------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~ 202 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQE-LAALAISELVPNKW----------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIF 202 (599)
T ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHhcccch----------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHH
Confidence 8899999999988776 44555777663321 222333333333 333344444 222 6899999998
Q ss_pred HHHHHHHHHH
Q 035916 171 AMFTTVSTLV 180 (506)
Q Consensus 171 ~~~~~~~~~~ 180 (506)
.+...++++.
T Consensus 203 ~i~~~i~~vl 212 (599)
T PF06609_consen 203 IIWSGIALVL 212 (599)
T ss_pred HHHHHHHHHH
Confidence 8877776653
No 96
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.85 E-value=4.9e-06 Score=86.67 Aligned_cols=149 Identities=11% Similarity=-0.040 Sum_probs=86.0
Q ss_pred hHHHHHHhhhccChhHHHHHHH--HHHHHHH-HhHHHHHHHhhhccCchhHHHHHHHHHH-HhhhhhhcccccccccCCc
Q 035916 16 WMMMDYLTEVWMISFVHAAGIV--NIFWGTA-HVLPLAIRYLVDTTISKYWMILVSSFAY-TAVIKFLFYDYKPECIGEG 91 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~--~~~~~~~-~~~~llgG~laD~~lGr~~ti~~~~~~~-~iG~~~l~~~~~~~~~~~~ 91 (506)
+.+..|++ +.|.|.++.+.+. ....... ...|+.+++.+|| +||||..+++..+. .+....+.... +. ..
T Consensus 22 p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~-~~---~~ 95 (390)
T TIGR02718 22 DALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVG-PD---VA 95 (390)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCC-cc---hh
Confidence 34455664 5699999998863 3333333 4566777889998 89999976655332 21122222110 10 01
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHH
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~ 166 (506)
....+.....+.++......+..+++..|..++ + ++...-....++. +|.+++... .++ .||+..
T Consensus 96 ~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~---~-------~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~ 165 (390)
T TIGR02718 96 GAGWAVGLLACASLASATQDIATDGMAAEHFNG---R-------TLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPA 165 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---h-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 112223333445566666666666665542211 1 2234455566677 888888877 665 799999
Q ss_pred HHHHHHHHHHHHHH
Q 035916 167 FGILAMFTTVSTLV 180 (506)
Q Consensus 167 F~i~~~~~~~~~~~ 180 (506)
|.+.++..++..+.
T Consensus 166 f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 166 FLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888776655543
No 97
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.85 E-value=2.2e-06 Score=92.96 Aligned_cols=137 Identities=17% Similarity=0.120 Sum_probs=113.6
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
+....+...+....+.|..+..+++++.|.+||| +|||++++++..+..++.+..+++ .+.+.+.+.+.+.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~a--------~~~~~~~~~Rfl~ 181 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAFA--------PNYWMFLIFRFLS 181 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHHh--------CcHHHHHHHHHHH
Confidence 4556778888899999999999999999999999 999999999999999988777766 3678899999999
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-hhhhHHHHHHHHHHHHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-KSWKIKFGILAMFTTVSTLV 180 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-~g~~~~F~i~~~~~~~~~~~ 180 (506)
|++.++...+...+++|.+.++. |...-++ +... .|..+++.. +|+ -+||+.+.+.++...+.++.
T Consensus 182 G~~~~~~~~~~~~~~~E~~~~~~----------R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 182 GFFGSGPLTVGFGLVAEIVSPKQ----------RGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HhhccchhHHhHhhheeecCcch----------hhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999884433 3355565 6667 778777777 887 88999999877666555443
No 98
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.85 E-value=6.3e-07 Score=93.46 Aligned_cols=337 Identities=10% Similarity=-0.048 Sum_probs=163.9
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHH--HHhhhhhhcccccccccCCchH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFA--YTAVIKFLFYDYKPECIGEGQK 93 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~--~~iG~~~l~~~~~~~~~~~~~~ 93 (506)
+.+.++|+++.|++.++.+.++++-.....+..++.|.++|| +|.||.+++...+ ...|-..+..-. | --.
T Consensus 28 pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~-p-----ll~ 100 (412)
T PF01306_consen 28 PFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFG-P-----LLQ 100 (412)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHH-H-----HHH
T ss_pred HHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHH-H-----HHH
Confidence 667899999999999999999999999999999999999999 7876665443332 223333322110 0 000
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGI 169 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i 169 (506)
.-+.++.++-++..|..-+...+.. |.+.|+-+++. .-| |.---+.- +|..++..+ +++ .+.+..|.+
T Consensus 101 ~n~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~sr~~-----~fe--YG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi 172 (412)
T PF01306_consen 101 SNFWLGAIIGGIYLGLVFNAGVPLS-EAYAERVSRRN-----GFE--YGRARMWGSIGFAIASLLAGILFNINPNIIFWI 172 (412)
T ss_dssp TT-HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHHHHH-----SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHHh-----cCC--cchHHHHhhHHHHHHHHHhheeeeeCccHHHHH
Confidence 1123344443444444333333322 66655433211 111 23323333 777777777 777 667788887
Q ss_pred HHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhh
Q 035916 170 LAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAI 249 (506)
Q Consensus 170 ~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~ 249 (506)
+.+...+..++....++. ++++.+ ..+.. + ...+..+..|.
T Consensus 173 ~s~~~~il~lll~~~~~~---~~~~~~-------------------~~~~~----~----------~~~~~~~~~~~--- 213 (412)
T PF01306_consen 173 ASAAAIILLLLLLLLKPD---VPPQAE-------------------VADAL----G----------AKKDKVSLKDV--- 213 (412)
T ss_dssp HHHHHHHHHHHHHSS------SSSSS--------------------SSTTS----S----------S------HHHH---
T ss_pred HHHHHHHHHHHHHHcCCc---Cchhhh-------------------hhccc----c----------cCCCCCcHHHH---
Confidence 665544433333332211 000000 00000 0 00000000000
Q ss_pred hcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhH
Q 035916 250 ILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYY 329 (506)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~ 329 (506)
.++-..|+++.++.+.......+..++|+...+... .-+ .-+...+.+-.++.
T Consensus 214 --------------------~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~--~f~-----~~~~g~~~~G~l~s 266 (412)
T PF01306_consen 214 --------------------LSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFAS--FFQ-----SAGQGNQMYGYLWS 266 (412)
T ss_dssp --------------------HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSS-----SHHHHHHHHHHHHH
T ss_pred --------------------HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhc-----ccccChhHHhHHHH
Confidence 011112344444444444444556666655433210 001 01111222222333
Q ss_pred HHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHH
Q 035916 330 ISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQF 409 (506)
Q Consensus 330 i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y 409 (506)
+-+++=.+++- +..++. +|.+ ++. ++++++..+.+--+. .+. ..+++|+++.-
T Consensus 267 ~~v~~E~~~m~-~~p~li---~rig--~k~---~Lllag~i~~iRi~~----------~~~--------~~~~~~i~~~k 319 (412)
T PF01306_consen 267 VQVFLEALMMF-FSPWLI---NRIG--AKN---LLLLAGVIMAIRIIG----------SGF--------ATNPWVISLIK 319 (412)
T ss_dssp HHHHHHHHHHH-HHHHHH---HHH---HHH---HHHHHHHHHHHHHHH----------HHT----------SHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHH---HhcC--hHh---HHHHHHHHHHHHHHH----------Hhh--------hcchHHHHHHH
Confidence 33322222221 111122 4433 322 233333322221111 011 24677888877
Q ss_pred HHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHH-HHHhHHHHHHHhhhhhh
Q 035916 410 LLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIF-VATMGVGIIGSTLSVYY 460 (506)
Q Consensus 410 ~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~-~l~~aiG~~l~~~l~~~ 460 (506)
.++++---+..+....++.++.|+++.+++..+. .++.++|..+.+.+.+.
T Consensus 320 lLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ 371 (412)
T PF01306_consen 320 LLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY 371 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 8999988899999999999999999998888874 57778887776655433
No 99
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.78 E-value=1.6e-07 Score=104.36 Aligned_cols=150 Identities=13% Similarity=0.056 Sum_probs=119.3
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc----------------
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK---------------- 84 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~---------------- 84 (506)
-+.++++++.++.+.+.+.+.....++.++.|+++|| .||+|.+.+|.+++.+|.++.++...
T Consensus 58 ~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~ 136 (633)
T TIGR00805 58 TIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN 136 (633)
T ss_pred hhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence 3446799999999999999999999999999999999 89999999999999999988876521
Q ss_pred ------ccc-----------------cC----CchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccc
Q 035916 85 ------PEC-----------------IG----EGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQ 137 (506)
Q Consensus 85 ------~~~-----------------~~----~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~ 137 (506)
.-| .. ......+++++++.|+|.+..-+...+++.|.++++ ++
T Consensus 137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~----------~~ 206 (633)
T TIGR00805 137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK----------NS 206 (633)
T ss_pred ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc----------cc
Confidence 001 00 012456778999999999999999999999877442 24
Q ss_pred hhHHHHHHHHH-HHHHHHHHH-HHH---h----------------------hhhHHHHHHHHHHHHHHHHH
Q 035916 138 LIIFSFWGLSL-VPNILSIAF-LFI---K----------------------SWKIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 138 ~~~f~~~y~~i-iG~~i~~~~-~~i---~----------------------g~~~~F~i~~~~~~~~~~~f 181 (506)
...+++++.+. +|..+|+++ +++ + +|+.+|.+.++..++..+.+
T Consensus 207 ~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 207 PLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999 999999988 665 2 38889998777665544433
No 100
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.74 E-value=1.7e-05 Score=84.47 Aligned_cols=127 Identities=9% Similarity=-0.084 Sum_probs=93.4
Q ss_pred hHHHHHHhh-hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTE-VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~-~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
+.+...+.+ ++|+|.++.+.+.+.+....-++-+..|++.|| +|.||++.++..+..++.+.+...... ...+..
T Consensus 54 ~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~~---~~~s~~ 129 (462)
T PRK15034 54 SAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQN---PNTPFG 129 (462)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHcc---cCCCHH
Confidence 455666655 799999999999999888888888888999999 799999999999988888877754110 012467
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF 157 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~ 157 (506)
.+++..++.++| |..-+.....+.+.++++ ++.....++...- +|..++..+
T Consensus 130 ~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~----------~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 130 IFIVIALLCGFA-GANFASSMGNISFFFPKA----------KQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred HHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh----------HhHHHHHHHHHHHhhHHHHHHHH
Confidence 788888899998 556677888888877432 2346677764333 555544444
No 101
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.2e-08 Score=99.68 Aligned_cols=160 Identities=11% Similarity=0.019 Sum_probs=128.8
Q ss_pred hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHH
Q 035916 25 VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIA 104 (506)
Q Consensus 25 ~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~ 104 (506)
.++.++++.+.+...+.....+..++-|.+.|| +|++-.+++|..++...+++.++.. +.+.+++++.+.+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~--------sy~~l~vAR~LQg 170 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGN--------SYPMLFVARSLQG 170 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcc--------hhHHHHHHHHHhh
Confidence 467788999999999999999999999999998 9999999999999999999999873 5689999999999
Q ss_pred hhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHH
Q 035916 105 FGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 105 ~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~ 179 (506)
+|.++...+-.++++|-|+|+. +|.+....---.+ +|.++||-. +.+ .|+...|++.++.+++...
T Consensus 171 vgsA~~~tsglamlAd~f~~d~---------er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~ 241 (464)
T KOG3764|consen 171 VGSAFADTSGLAMLADVFPEDN---------ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGA 241 (464)
T ss_pred hhHHHHHhhhHHHHHHHcccch---------hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHH
Confidence 9999999999999999998755 2346666666677 888888877 666 8999999999888777665
Q ss_pred H-HHhcCcceee--cCCCCChhHHHH
Q 035916 180 V-FLSGSSSYRR--RKPQGSSLTTVV 202 (506)
Q Consensus 180 ~-f~~~~~~~~~--~~p~g~~l~~i~ 202 (506)
+ ++.-.+.-.. ..+++.|+.++.
T Consensus 242 L~l~vi~p~~~~~~~~~~~~~~~~Ll 267 (464)
T KOG3764|consen 242 LQLLVIEPTEMDPDSTEQGTPMWSLL 267 (464)
T ss_pred HHHheeCccccCccccccCccHHHHH
Confidence 4 3333332111 134555665544
No 102
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=98.67 E-value=3.2e-07 Score=95.67 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=108.2
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+.+ .|.+ +++.....+.....++.++.|+++|| +||+|.+..+..+..++.+++.... +...
T Consensus 237 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 304 (399)
T PRK05122 237 TFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAP--------SPWM 304 (399)
T ss_pred HHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhc--------cHHH
Confidence 344556543 4553 34555666777777788999999999 7999999998888888877666542 3345
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
..++.++.++|.+...|...+...|..+ ++ ++.+.+++++... +|..+++.+ +++ .||+..|.+.
T Consensus 305 ~~~~~~l~G~~~~~~~~~~~~~~~~~~~---~~-------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 374 (399)
T PRK05122 305 ALIGAALTGFGFSLVFPALGVEAVKRVP---PQ-------NRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAA 374 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhCC---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5667788899998888877777766442 22 3467889988888 998888777 776 6899999988
Q ss_pred HHHHHHHHHHHHhcCcc
Q 035916 171 AMFTTVSTLVFLSGSSS 187 (506)
Q Consensus 171 ~~~~~~~~~~f~~~~~~ 187 (506)
++..+++++.....+++
T Consensus 375 ~~~~~~~~~~~~~~~~~ 391 (399)
T PRK05122 375 ALAALLGLALTWLLYRR 391 (399)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 88777776654443433
No 103
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=98.67 E-value=2.8e-07 Score=94.07 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=108.7
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
+++|.+..+++.+...+.....++.+++|+++|| +|||+.+.++..+..++.+++..... .....+.....+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 305 (377)
T TIGR00890 233 QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPM------LNDVLFLATVALV 305 (377)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHccc------chhHHHHHHHHHH
Confidence 5688988889999999999999999999999999 79999999999988888776655421 1223344455667
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVST 178 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~ 178 (506)
+++.|...+..+++..|.++++ ++.+.+.+++... +|..+++.+ +++ .||+..|.+.++..++++
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPA----------NSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHhccchhccHHHHHHHhhhh----------hhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 7888888788888888877442 2347788888888 999999998 777 789999998887776654
No 104
>PRK03699 putative transporter; Provisional
Probab=98.64 E-value=2.3e-07 Score=96.88 Aligned_cols=144 Identities=13% Similarity=0.057 Sum_probs=107.7
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+++++|++..+++.+.+.+.....++.+++|+++|| +|||+.+..+..+..++..++.... +...
T Consensus 226 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~ 296 (394)
T PRK03699 226 SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRF-FDLQRILTVLAGLALVLMYLFVNTD--------DPSH 296 (394)
T ss_pred HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHcC--------CchH
Confidence 346678888999999999999999999999999999999999 7999998887777666655544331 2233
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
......+.+++.+..-|...+.+.++.++++ ....++.+.+. +|..+++.+ +++ .|++..|.+.
T Consensus 297 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~ 365 (394)
T PRK03699 297 LLYAILGLGFFSSAIYTTIITLGSQQTKVAS-----------PKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTA 365 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhh
Confidence 4445566777777777887888777664322 13467777788 999999999 887 7888888776
Q ss_pred HHHHHHHHH
Q 035916 171 AMFTTVSTL 179 (506)
Q Consensus 171 ~~~~~~~~~ 179 (506)
++...++.+
T Consensus 366 ~~~~~~~~~ 374 (394)
T PRK03699 366 NGLYAVVFV 374 (394)
T ss_pred HHHHHHHHH
Confidence 665555543
No 105
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.62 E-value=5.1e-07 Score=95.20 Aligned_cols=144 Identities=11% Similarity=0.123 Sum_probs=119.8
Q ss_pred hHHHHHHhhhccChhHH-HHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEVWMISFVH-AAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~-a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
+....|+.+++|+++++ .+.+.++|.-.-.++-+++|+++|| +|.|+.+.++.+...+..+++.++. +..
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~--------Sl~ 116 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGT--------SVW 116 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHH--------HHH
Confidence 44678999999999999 9999999999999999999999999 8999999999999998888887762 567
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHH---H
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIK---F 167 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~---F 167 (506)
.+.+.+++.|++.|..- ....++..-+++ + +|++..+++-.+. +|.++++.+ .++ .||+.- .
T Consensus 117 ~L~i~R~llGvaEA~~~-A~~syI~~WfP~---k-------ER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln 185 (511)
T TIGR00806 117 HMQLMEVFYSVTMAARI-AYSSYIFSLVPP---S-------RYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLN 185 (511)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 88899999999999988 888888887743 3 3457889999999 999999988 657 676654 3
Q ss_pred HHHHHHHHHHHH
Q 035916 168 GILAMFTTVSTL 179 (506)
Q Consensus 168 ~i~~~~~~~~~~ 179 (506)
.|+...+.++++
T Consensus 186 ~Isl~s~~~a~~ 197 (511)
T TIGR00806 186 IISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHHH
Confidence 455666666655
No 106
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.61 E-value=1.1e-05 Score=83.21 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=120.4
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.++.++.++|.+|-+.+-+.+...--++-.+.|.++|| -+.|+-+-.|.++..+-.+++..++ +...+.+-
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~--------s~~~~~~l 123 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSP--------SLFLFAVL 123 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhh--------HHHHHHHH
Confidence 46667788999999999999999999999999999999 7999999999999999888888773 56778888
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH---HHH---hhhhHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF---LFI---KSWKIKFGILAM 172 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~---~~i---~g~~~~F~i~~~ 172 (506)
..+.+.-+|.=-|.....+++-|+.+ +|.+..+.+-.+- +|..+.+.+ +++ .+|+.+|.+|++
T Consensus 124 ~~lng~fQg~Gwpp~~~~i~~Wfsr~----------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgi 193 (448)
T COG2271 124 WVLNGWFQGMGWPPCARTITHWFSRK----------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGI 193 (448)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHcCcc----------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHH
Confidence 88999999999999999999888432 2456678888888 888777665 344 599999999987
Q ss_pred H-HHHHHHHHHhcC
Q 035916 173 F-TTVSTLVFLSGS 185 (506)
Q Consensus 173 ~-~~~~~~~f~~~~ 185 (506)
. ++++++.+...+
T Consensus 194 iaiival~~~~~~r 207 (448)
T COG2271 194 IAIIVALILLFLLR 207 (448)
T ss_pred HHHHHHHHHHHHhC
Confidence 6 556666555543
No 107
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.61 E-value=1.6e-07 Score=81.44 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=96.2
Q ss_pred HHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhh
Q 035916 40 FWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIA 119 (506)
Q Consensus 40 ~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~ 119 (506)
+.....++.++.|+++|| +|||+++..+..+..++.+.+... .+.+.+.....+.+++.+...+...++..
T Consensus 7 ~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALS--------SNITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred ehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344566788899999999 799999999999888887766554 23456677788899999999999999999
Q ss_pred cccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHHHH
Q 035916 120 DQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 120 dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~~f 181 (506)
|.+++++ +.+..++..... +|..+++.+ +++ .+|+..|.+..+...++.+..
T Consensus 78 ~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 78 DIYPPEE----------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred HHCChhh----------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 8775432 346788888888 999999988 766 789888888776666555443
No 108
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.59 E-value=9.1e-07 Score=90.51 Aligned_cols=127 Identities=14% Similarity=0.140 Sum_probs=107.0
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
|...+.+.++.+..+++.+-.+|-+.-.+.++..|++.+| +|+|+.|++|..++.+|..+..-++. ......+.
T Consensus 35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~-----~~~y~~FL 108 (422)
T COG0738 35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAAS-----SKSYGFFL 108 (422)
T ss_pred hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhh-----hhhHHHHH
Confidence 5567778899999999999999999999999999999999 89999999999999999988764442 24567888
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.++.+++.|.|..+...++++++.-++++..+| .|.---.+ +|+.++|.+ +++
T Consensus 109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~r----------lnl~q~fn~lGa~~gp~~g~~l 163 (422)
T COG0738 109 VALFILASGIGLLETAANPYVTLLGKPESAAFR----------LNLAQAFNGLGAILGPLLGSSL 163 (422)
T ss_pred HHHHHHHhhhHHHHhccchHHHHhCCchhHHHH----------HHHHHHhhhhHHHHHHHHHHHH
Confidence 899999999999999999999998877543221 45555677 899999888 554
No 109
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=98.56 E-value=9.7e-07 Score=90.69 Aligned_cols=144 Identities=15% Similarity=0.035 Sum_probs=107.3
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|+++++|.++.+++.+.....+....+.+++|+++|| +|||+.+.++.....+++..+... .+.+...
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 292 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAAD--------NSLWALL 292 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence 4567778899999999988877777777778899999999 799999988877666555443332 1334455
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
....+.+++.|...|...++..|..+ ++ +.+..+.++... +|..+++.+ +++ .||+..|.+.++
T Consensus 293 ~~~~~~g~~~g~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~ 361 (375)
T TIGR00899 293 MLQLLNAIFIGILAGIGMLYFQDLMP----GR-------AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIV 361 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc----ch-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 55666777777777777777766542 21 237788888888 999999998 776 789999998888
Q ss_pred HHHHHHHHH
Q 035916 173 FTTVSTLVF 181 (506)
Q Consensus 173 ~~~~~~~~f 181 (506)
..+++.+..
T Consensus 362 ~~~~~~~~~ 370 (375)
T TIGR00899 362 MLIVALFCL 370 (375)
T ss_pred HHHHHHHHH
Confidence 877776654
No 110
>PRK15011 sugar efflux transporter B; Provisional
Probab=98.55 E-value=1.5e-06 Score=90.74 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=101.2
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+..|+++++|+++.+++.+.........++.+++|+++|| +|||+.+..+.....+....+... .+....
T Consensus 238 ~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 308 (393)
T PRK15011 238 NMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMA--------HSPAIL 308 (393)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHH--------hhHHHH
Confidence 45568888899999999988888777778888999999999 799998877766555443333222 123333
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILA 171 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~ 171 (506)
.....+.+++.|..-+...+...|..+ ++ +....+++.... +|..+++.+ +++ .||+..|.+.+
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p----~~-------~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~ 377 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP----GQ-------AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----CC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444555555555555555555555553 22 235667766677 999999888 777 78999999888
Q ss_pred HHHHHHHHHHH
Q 035916 172 MFTTVSTLVFL 182 (506)
Q Consensus 172 ~~~~~~~~~f~ 182 (506)
+..++++++..
T Consensus 378 ~~~~~~~~~~~ 388 (393)
T PRK15011 378 VMIIATLFCLL 388 (393)
T ss_pred HHHHHHHHHHH
Confidence 77777766544
No 111
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.54 E-value=1e-05 Score=82.23 Aligned_cols=113 Identities=13% Similarity=-0.021 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhc
Q 035916 28 ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGI 107 (506)
Q Consensus 28 ~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~ 107 (506)
.+..-++-+=+.|+.+-.+++++-|-++|+ .|||.++.+|.+...+.+.+.+.+. +...+.+++.+.|+..
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~--------~F~afv~aR~l~Gi~k 135 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSR--------NFAAFVLARFLGGIFK 135 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhcc
Confidence 344568888889999999999999999999 6999999999999999888888773 4455667788877777
Q ss_pred ccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 108 SGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 108 g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
|-.. .+.++++|.++|++ | ...++-.-.+. +|..+||.+ +|+
T Consensus 136 gnl~-v~rAiisdV~sek~---r-------~l~ms~v~~a~~lGfilGPmIGgyl 179 (451)
T KOG2615|consen 136 GNLS-VIRAIISDVVSEKY---R-------PLGMSLVGTAFGLGFILGPMIGGYL 179 (451)
T ss_pred CchH-HHHHHHHhhcChhh---c-------cceeeeeehhhhcchhhcchhhhHH
Confidence 6543 45688899886633 2 24466666777 899999999 887
No 112
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.54 E-value=1.3e-06 Score=87.90 Aligned_cols=146 Identities=18% Similarity=0.177 Sum_probs=122.6
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhH-HHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYW-MILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~-ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
.+..|+.+.+|.++.+.+.+.........++.++.|+++|| +|||+ .+..+..+..++.+.+.... +...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~ 267 (352)
T cd06174 197 YLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAP--------SLAL 267 (352)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhc--------cHHH
Confidence 34566666679999999999999999999999999999999 79999 99999999999888777652 3466
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
..+...+.+++.+...+...++..|..++ + ++.+.++.+.... +|..+++.+ +++ .+|+..|.+.
T Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~ 337 (352)
T cd06174 268 LLVALLLLGFGLGFAFPALLTLASELAPP---E-------ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337 (352)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhhcCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHH
Confidence 77888899999999999999999987754 2 3457889988888 999999999 777 7899999998
Q ss_pred HHHHHHHHHHH
Q 035916 171 AMFTTVSTLVF 181 (506)
Q Consensus 171 ~~~~~~~~~~f 181 (506)
++..+++.+..
T Consensus 338 ~~~~~i~~i~~ 348 (352)
T cd06174 338 AALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHh
Confidence 88877776644
No 113
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.52 E-value=8e-05 Score=80.59 Aligned_cols=139 Identities=9% Similarity=0.064 Sum_probs=103.4
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+...+.++++.+..+++++.+...+..++.+++.+.+.|| +|.|.+++.|.+++.+|.++-+.+. +.+.+
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~--------~i~~l 137 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFAT--------SLWQL 137 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHh--------hHHHH
Confidence 45566778899999999999999999999999999999999 7999999999999999998877773 46666
Q ss_pred HHHH-HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 97 YTAL-GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 97 ~~~l-~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
++.. ++.|+|.|+........++.-|++ || .+...+.+ ..- +|.++-+.+ -++ +||+..+.+-
T Consensus 138 ~lt~gvi~G~G~~~~~~paiviv~~YF~k-----kR----~lA~Gia~--~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~ 206 (509)
T KOG2504|consen 138 YLTFGVIGGLGLGLIYLPAVVILGTYFEK-----KR----ALATGIAV--SGTGVGTVVFPPLLKYLLSKYGWRGALLIF 206 (509)
T ss_pred HHHHHHHhhccchhhhcchhhhhhhHhHH-----HH----HHHHhhhh--ccCCcceeeHHHHHHHHHHHhCcHHHHHHH
Confidence 6665 458999999888888888854422 11 12222221 222 555444444 444 9999999876
Q ss_pred HHHHH
Q 035916 171 AMFTT 175 (506)
Q Consensus 171 ~~~~~ 175 (506)
+..++
T Consensus 207 ~~~~l 211 (509)
T KOG2504|consen 207 GGISL 211 (509)
T ss_pred HHHHH
Confidence 65553
No 114
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=98.49 E-value=2.5e-06 Score=89.22 Aligned_cols=152 Identities=9% Similarity=-0.024 Sum_probs=111.3
Q ss_pred hhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccC
Q 035916 11 VAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIG 89 (506)
Q Consensus 11 s~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~ 89 (506)
++++. ..+..|+.+ .|.+..+++.....+.....++.++.|+++|| +|||+.+..+..+..++..++....
T Consensus 220 ~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~------ 291 (393)
T PRK09705 220 GYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLP------ 291 (393)
T ss_pred HHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHcc------
Confidence 34443 345567765 79999999999999999999999999999999 7999999998888888766554321
Q ss_pred CchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---h-hh
Q 035916 90 EGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---K-SW 163 (506)
Q Consensus 90 ~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~-g~ 163 (506)
...... ...+.++|.|...|+..+...|+++++ + ++.+.++..+... ++..+++.+ +++ . +|
T Consensus 292 -~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~--~-------~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~ 359 (393)
T PRK09705 292 -LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQP--A-------IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNY 359 (393)
T ss_pred -chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 111212 234567888888888777777766432 1 2457788888888 999999998 888 3 48
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 035916 164 KIKFGILAMFTTVSTLVFL 182 (506)
Q Consensus 164 ~~~F~i~~~~~~~~~~~f~ 182 (506)
...|.+.+++.++..+...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK09705 360 LMDWAFHALCVVGLMIITL 378 (393)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8889888777776655443
No 115
>PTZ00207 hypothetical protein; Provisional
Probab=98.46 E-value=2.6e-06 Score=93.12 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=109.1
Q ss_pred chhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchH
Q 035916 14 VFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQK 93 (506)
Q Consensus 14 g~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~ 93 (506)
+.+.....+.+++|+++++.+.+.+......+ +.+++|+++|| +|||+++.++.++..+|++++.++..... ..+.
T Consensus 45 ~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~-~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i--~~s~ 120 (591)
T PTZ00207 45 AFNLISGAMQARYNLTQRDLSTITTVGIAVGY-FLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVI--EGSV 120 (591)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcccc--cCcH
Confidence 34555567788999999999998877555544 55678999999 89999999999999999998888622100 1246
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHH-HHHH-HHH-hhhhHHHHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNIL-SIAF-LFI-KSWKIKFGI 169 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i-~~~~-~~i-~g~~~~F~i 169 (506)
+.+++.+.+.++|.+.+.+.......+.|+ + +|....++..... +|+.+ +++. .+. .+|+..|.+
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp----~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~ 189 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFP----S-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFF 189 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----h-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 778888999999999988888888888774 2 2457889988888 99975 4544 554 567776665
Q ss_pred HHHH
Q 035916 170 LAMF 173 (506)
Q Consensus 170 ~~~~ 173 (506)
.++.
T Consensus 190 l~vl 193 (591)
T PTZ00207 190 LMSF 193 (591)
T ss_pred HHHH
Confidence 4444
No 116
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.45 E-value=2.1e-06 Score=89.40 Aligned_cols=147 Identities=12% Similarity=0.021 Sum_probs=103.5
Q ss_pred HHHHHhhhccChhH---HHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 18 MMDYLTEVWMISFV---HAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 18 l~~yl~~~l~~~~~---~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
+..|+.+..+.... ..+.+.........+..+..|+++|| +||++++..+..+..++.+.+.... +.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 312 (408)
T PRK09874 242 LTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQ--------TPL 312 (408)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhc--------cHH
Confidence 34555554332221 23344444555566777888999999 7999999999888777766555431 345
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
.+++..++.+++.|...|...+...+..++ + ++.+.+++++... +|..+++.+ +++ .||+..|.+
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~-------~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~ 382 (408)
T PRK09874 313 QLGILRFLLGAADGALLPAVQTLLVYNSSN---Q-------IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLV 382 (408)
T ss_pred HHHHHHHHHHhhhHhhHHHHHHHHHHhCCc---c-------cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHH
Confidence 566677788999999988888887654422 1 2346788888888 999999999 777 789999999
Q ss_pred HHHHHHHHHHHHHh
Q 035916 170 LAMFTTVSTLVFLS 183 (506)
Q Consensus 170 ~~~~~~~~~~~f~~ 183 (506)
.++..+++.+....
T Consensus 383 ~~~~~l~~~~~~~~ 396 (408)
T PRK09874 383 TAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777665443
No 117
>PRK03545 putative arabinose transporter; Provisional
Probab=98.43 E-value=5.2e-06 Score=86.45 Aligned_cols=149 Identities=8% Similarity=-0.039 Sum_probs=108.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+.++.|++..+++.+...+.....++.+++|+++|| .||++. ..+..+..++..++.... .+.+.
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~-~~~~~~~~~~~~~l~~~~-------~~~~~ 296 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFL-LIAIALLLVCLLLLLPAA-------NSEWH 296 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHH-HHHHHHHHHHHHHHHHHh-------chHHH
Confidence 345567777899999999999999999999999999999999 688764 455555555544332221 13455
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
+++...+.+++.+...+...+.+.+..+ + ++.+..+++.... +|..+|+.+ +++ .|++..|.+.
T Consensus 297 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~----~-------~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~ 365 (390)
T PRK03545 297 LSVLSIFWGIAIMCIGLAMQVKVLKLAP----D-------ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVG 365 (390)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhCC----C-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 5666777888888777777777665432 2 2346677777777 888888888 777 8899999998
Q ss_pred HHHHHHHHHHHHhc
Q 035916 171 AMFTTVSTLVFLSG 184 (506)
Q Consensus 171 ~~~~~~~~~~f~~~ 184 (506)
++..+++++.+...
T Consensus 366 ~~~~~~~~~~~~~~ 379 (390)
T PRK03545 366 AALALAALVWSILI 379 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877766543
No 118
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.41 E-value=3.6e-06 Score=88.51 Aligned_cols=143 Identities=11% Similarity=0.002 Sum_probs=108.8
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|+.+.+|.+..+++.+...+.....++.+++|+++|| .++++.+..+.....++.+++.... +.....
T Consensus 246 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~ 316 (417)
T PRK10489 246 YPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMP--------MWILAV 316 (417)
T ss_pred hHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccc--------hHHHHH
Confidence 4457777799999999999999998899999999999998 6778888888888888877665542 344556
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
++..+.+++.+...+...++..|..+++ .+.+.+++++... +|..+++.+ +++ .|+...|.+.++
T Consensus 317 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~----------~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~ 386 (417)
T PRK10489 317 LCLALFGYLSAISSLLQYTLLQTQTPDE----------MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGF 386 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHH----------HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHH
Confidence 6777788888877777777777766332 2457889988888 999999999 877 677778876665
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
+..+..+
T Consensus 387 ~~~~~~~ 393 (417)
T PRK10489 387 GLLIIGV 393 (417)
T ss_pred HHHHHHH
Confidence 5444333
No 119
>PRK03633 putative MFS family transporter protein; Provisional
Probab=98.40 E-value=5.7e-06 Score=85.95 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=102.5
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|+++ .|.+..+++.+.........++.++.|+++|| +||++.+..+..+..++.+.+. . .....
T Consensus 223 lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~-~----------~~~~~ 289 (381)
T PRK03633 223 MPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML-S----------QAAMA 289 (381)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh-h----------hHHHH
Confidence 4556654 68999999999988888888999999999999 7999999988888887765443 1 01223
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
..+.+.+++.+...|...+...|..++++ +....+.+..+. +|.++++.+ +++ .|++..|.+.+.
T Consensus 290 ~~~~l~g~~~~~~~p~~~~~~~~~~~~~~----------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~ 359 (381)
T PRK03633 290 PALFILGAAGFTLYPVAMAWACEKVEHHE----------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIAS 359 (381)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHccCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 45566666666777888888887653321 234566666777 999999998 777 789999988777
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
..+++.+
T Consensus 360 ~~l~~~~ 366 (381)
T PRK03633 360 VSFIYLL 366 (381)
T ss_pred HHHHHHH
Confidence 6655543
No 120
>PRK12382 putative transporter; Provisional
Probab=98.38 E-value=4.3e-06 Score=86.99 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=107.4
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|+++ .|++. ++.....+.....++.++.|++.|| +||+|.+..+..+..++.+++.... +.....
T Consensus 239 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 306 (392)
T PRK12382 239 VSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAP--------TAWVAL 306 (392)
T ss_pred HHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcc--------cHHHHH
Confidence 3455543 45543 4455566666667788999999999 7999999999988888877665542 234556
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
.+..+.+++.+...|...+...|.++ ++ ++.+.+++++... +|..+++.+ +++ .||+..|.+.++
T Consensus 307 ~~~~l~g~~~~~~~~~~~~~~~~~~~---~~-------~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~ 376 (392)
T PRK12382 307 AGAALTGAGCSLIFPALGVEVVKRVP---SQ-------VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAI 376 (392)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC---HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 67778888888888887777776552 22 3567899999999 999999988 777 799999999888
Q ss_pred HHHHHHHHHHh
Q 035916 173 FTTVSTLVFLS 183 (506)
Q Consensus 173 ~~~~~~~~f~~ 183 (506)
..+++.++.+.
T Consensus 377 ~~~~~~~~~~~ 387 (392)
T PRK12382 377 SAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHh
Confidence 87777765543
No 121
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.37 E-value=0.00048 Score=69.97 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=120.6
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
++-+..=+++++|.|.+.++.+.+.=...--++++++.+++-| +|-.|++..+.++..+|.++=... +..
T Consensus 31 vgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~---------~~~ 100 (395)
T COG2807 31 VGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG---------GLP 100 (395)
T ss_pred hhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc---------cHH
Confidence 3344555678999999999999998888888889999999988 899999999999999998764443 356
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFG 168 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~ 168 (506)
.++.+-++++.|.+....-.++.+-+-|+++ .......|-.+. +|+.++..+ +.+ .||+.+..
T Consensus 101 ~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-----------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~ 169 (395)
T COG2807 101 LLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-----------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG 169 (395)
T ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-----------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence 7889999999999999999999998766432 335667777888 999999888 666 47999988
Q ss_pred HHHHHHHHHHHHHHhc
Q 035916 169 ILAMFTTVSTLVFLSG 184 (506)
Q Consensus 169 i~~~~~~~~~~~f~~~ 184 (506)
.=++..++++++.+..
T Consensus 170 ~WAl~allAl~~WlPq 185 (395)
T COG2807 170 FWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8777777777766654
No 122
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=98.37 E-value=8.1e-06 Score=88.02 Aligned_cols=134 Identities=11% Similarity=0.053 Sum_probs=88.7
Q ss_pred hhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhh-hcccccccc
Q 035916 10 FVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKF-LFYDYKPEC 87 (506)
Q Consensus 10 fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~-l~~~~~~~~ 87 (506)
+.||+. ..+..|+++.+|++..++..+.........++.+++|+++|| +|||+++..+.....++... +....
T Consensus 264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~---- 338 (490)
T PRK10642 264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILIN---- 338 (490)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 456664 456678888889998888877777777788889999999999 79999998887654433222 21111
Q ss_pred cCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 88 IGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 88 ~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
..+...++.++.+.+++.++..+...++..+.++++ .|.....+.|-.. +++.+++.+ +++
T Consensus 339 --~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~----------~Rg~~~g~~~~~~~~~g~~~p~i~g~l 401 (490)
T PRK10642 339 --SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH----------IRYSALAAAFNISVLVAGLTPTLAAWL 401 (490)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc----------cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012445566777777766666666677777766331 2345677655444 555566666 766
No 123
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.36 E-value=5.3e-06 Score=89.08 Aligned_cols=141 Identities=13% Similarity=-0.046 Sum_probs=98.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+++++|++..+++.+...+.....++.+++|+++|| +|||+.+..+..+..++.+++..... ...+.
T Consensus 296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 368 (496)
T PRK03893 296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDW-LGTRKAYVCSLLISQLLIIPVFAIGG------ANVWV 368 (496)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhhccc------cHHHH
Confidence 446678888999999999999999999999999999999999 79999988887766665544332211 12222
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
....+.+.+....+..+..+++..|.++++ ++.+.+++++... +|..+++.+ +++ .||+..|.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~ 438 (496)
T PRK03893 369 LGLLLFFQQMLGQGISGLLPKLIGGYFDTE----------QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASL 438 (496)
T ss_pred HHHHHHHHHHHhcccchhhHHHHHhhCCHH----------HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHH
Confidence 222223322222234466667777666331 2457788888888 999999999 887 6777777554
Q ss_pred HHH
Q 035916 171 AMF 173 (506)
Q Consensus 171 ~~~ 173 (506)
+..
T Consensus 439 ~~~ 441 (496)
T PRK03893 439 SFS 441 (496)
T ss_pred HHH
Confidence 433
No 124
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.0005 Score=72.87 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=103.0
Q ss_pred ccchhhhhhhhc--h----------hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc---CchhHHH-H
Q 035916 3 VLSWSDVFVAFV--F----------WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT---ISKYWMI-L 66 (506)
Q Consensus 3 ~~~~~~~fs~yg--~----------~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~---lGr~~ti-~ 66 (506)
.|++.|+.+|-. + ..|..|.|+..|.+.+.++.+..+--..--+.-++-|++.||. +||+|-- +
T Consensus 8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL 87 (467)
T COG2211 8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLL 87 (467)
T ss_pred cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHH
Confidence 567777777633 1 2345677899999999999999999999999999999999973 7887765 4
Q ss_pred HHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHH
Q 035916 67 VSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGL 146 (506)
Q Consensus 67 ~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~ 146 (506)
++.+-..+...++..+... +...+....++-..+..++...+.-...++.+..-++ ++|| .+..+|..+
T Consensus 88 ~g~ip~~i~~~l~F~~p~~--~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d--~~ER-------~~l~s~R~~ 156 (467)
T COG2211 88 WGAIPFAIVAVLLFITPDF--SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQD--PQER-------ASLTSWRMV 156 (467)
T ss_pred HHhHHHHHHHHHHHcCCCc--ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCC--HHHH-------HHHHHHHHH
Confidence 4556677777777666321 1122333344455667777777777777888776644 5544 477899888
Q ss_pred HH-HHHHHHHHH
Q 035916 147 SL-VPNILSIAF 157 (506)
Q Consensus 147 ~i-iG~~i~~~~ 157 (506)
.. +|.++...+
T Consensus 157 ~~~~g~~l~~~~ 168 (467)
T COG2211 157 FASLGGLLVAVL 168 (467)
T ss_pred HHHHHHHHHHHH
Confidence 88 998777666
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.34 E-value=3.5e-06 Score=94.72 Aligned_cols=128 Identities=12% Similarity=-0.007 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccc
Q 035916 35 GIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSI 114 (506)
Q Consensus 35 ~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~ 114 (506)
...........++.+++|+++|| +|||+++.++.++..++.+++.... +...+.+...+.++..++.-+..
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~--------s~~~ll~~~~l~g~~~~~~~~~~ 669 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGN--------SESAMIALLCLFGGLSIAAWNAL 669 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556778889999999999 8999999999998888877766542 22334444556666666677888
Q ss_pred hhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHHHHHHHHHHHHHH
Q 035916 115 DRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 115 ~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i~~~~~~~~~~~f 181 (506)
.++.+|.++.+ .|...+.+.+... +|+++++.+ +++ .+....|.+++++++++.++.
T Consensus 670 ~a~~aEl~Pt~----------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~ 730 (742)
T TIGR01299 670 DVLTVELYPSD----------KRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA 730 (742)
T ss_pred HHHHHHHcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 89999988432 3458899999999 999999999 766 556677888877776665543
No 126
>PRK09952 shikimate transporter; Provisional
Probab=98.34 E-value=9.5e-06 Score=86.19 Aligned_cols=158 Identities=9% Similarity=0.019 Sum_probs=103.1
Q ss_pred hhhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 10 FVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 10 fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
+++|+. +.+..|+++.+|++......+.........++.++.|+++|| +||||++..+.++..++.+.+......
T Consensus 264 ~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~--- 339 (438)
T PRK09952 264 LTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEA--- 339 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 345553 455668888899988766555555666667778899999999 799999988877665544333221100
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHH-HHH-HHHHHHHHH-HHH---h-
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWG-LSL-VPNILSIAF-LFI---K- 161 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y-~~i-iG~~i~~~~-~~i---~- 161 (506)
............+.+++.+...+...++.+|.++.+ .|.....+-| .+. +|+.+++.+ +++ .
T Consensus 340 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~----------~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~ 408 (438)
T PRK09952 340 -QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS----------YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG 408 (438)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc----------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 012233344556667888888888889999888542 2334555544 345 788888888 766 2
Q ss_pred -hhhHHHHHHHHHHHHHHHHHH
Q 035916 162 -SWKIKFGILAMFTTVSTLVFL 182 (506)
Q Consensus 162 -g~~~~F~i~~~~~~~~~~~f~ 182 (506)
+|...|...+++.+++.+..+
T Consensus 409 ~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 409 GSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 377777776666666655433
No 127
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.32 E-value=8.9e-06 Score=83.17 Aligned_cols=153 Identities=12% Similarity=-0.060 Sum_probs=98.5
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHH-HHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWM-ILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~t-i~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
..+..|+++.+|.+..+++.+.........++.+++|+++|| +|||+. +........++.++..+..... ......
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 312 (399)
T TIGR00893 236 TWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL-LLRRGKSLVFARKTAIIAGLVLSLLMFAT--NYVNIP 312 (399)
T ss_pred HHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchhHHHHHHHHHHHHHHHHHHHh--ccchhH
Confidence 345668888899999999999999999999999999999999 788851 1111111111111111000000 000112
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh-hhHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS-WKIKFG 168 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g-~~~~F~ 168 (506)
.......+++.+..+..|...++.+|.++++ ++...++++.... +|..+++.+ +++ .| |+..|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 382 (399)
T TIGR00893 313 YAALALVALGFFGLGAGAIGWALISDNAPGN----------IAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM 382 (399)
T ss_pred HHHHHHHHHHHhchhhhhHHHHHHHhhcChh----------HHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHH
Confidence 2233333333333337888999999877432 2457889999899 999999998 877 56 999998
Q ss_pred HHHHHHHHHHHHH
Q 035916 169 ILAMFTTVSTLVF 181 (506)
Q Consensus 169 i~~~~~~~~~~~f 181 (506)
+.++..+++.+..
T Consensus 383 ~~~~~~~~~~~~~ 395 (399)
T TIGR00893 383 VVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776666544
No 128
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.32 E-value=8.9e-06 Score=84.91 Aligned_cols=141 Identities=12% Similarity=-0.114 Sum_probs=102.4
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..|++ +.|++..+++.+...+.....++.+++|+++|| +||++++..+.....++.+++.... +...+.+
T Consensus 244 p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 313 (406)
T PRK11551 244 PSLLV-GQGLSRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAP--------SFAGMLL 313 (406)
T ss_pred HHHHH-hCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcC--------cHHHHHH
Confidence 34554 479999999999999999999999999999999 7999999887766666655554331 2334445
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILAM 172 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~~ 172 (506)
...+.+++.++..+...++..|.++++ ++.+..++.+... +|..+++.+ +++ .+|...+.+...
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~----------~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~ 383 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQ----------VRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIP 383 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchh----------hhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHH
Confidence 556677777777788888888777432 2457788888888 999999999 777 355556665554
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
..+++.+
T Consensus 384 ~~~~~~~ 390 (406)
T PRK11551 384 VILVAAL 390 (406)
T ss_pred HHHHHHH
Confidence 4444433
No 129
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.30 E-value=1.1e-05 Score=85.05 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=101.2
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccC---CchHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIG---EGQKILL 96 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~---~~~~~~~ 96 (506)
.+..++.|++..+++.....+.....++.+++|+++|| +|||+.+..+..+..++.+++.+...+...+ ......+
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAI 386 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHH
Confidence 44446789999888888888888899999999999999 7999999999888887776665321110000 0012222
Q ss_pred HHHH-HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 97 YTAL-GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 97 ~~~l-~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
.... ...+.+. +.-|+...+..|.++++ ++.........+. +|.++++.+ +++ .||+..|.+.
T Consensus 387 ~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~----------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~ 455 (481)
T TIGR00879 387 VFILLFIAFFAM-GWGPVPWVIVSEIFPLS----------LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFF 455 (481)
T ss_pred HHHHHHHHHHHc-cccCeehhhhhccCChH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhH
Confidence 2222 2222332 34577777778777432 2346788888888 999999988 766 6888888877
Q ss_pred HHHHHHHHHHH
Q 035916 171 AMFTTVSTLVF 181 (506)
Q Consensus 171 ~~~~~~~~~~f 181 (506)
+++.+++.++.
T Consensus 456 ~~~~~~~~i~~ 466 (481)
T TIGR00879 456 GGLNVLGLIFV 466 (481)
T ss_pred HHHHHHHHHHH
Confidence 77666655543
No 130
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.29 E-value=6.5e-06 Score=85.22 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=98.3
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+..|+++++|++..+++.+...+.....++.+++|+++|| +|||+.+..+..+..+....+.... .+...+
T Consensus 260 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 331 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDW-LGRRKAYVCSLLAGQLLIIPVFAIG-------ANVAVL 331 (405)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchhhhHHHHHHHHHHHHHHHHhC-------CchHHH
Confidence 34567778899999999999999999999999999999999 7999999888776533222211111 123444
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh-hhHHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS-WKIKFGIL 170 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g-~~~~F~i~ 170 (506)
.+++.+.++..++..+...++..|.+++ + ++.+.++..+... +|..+++.+ +++ .| |+..|...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 332 GLGLFFQQMLVQGIWGILPKHLGEYFPT---D-------QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHHHHccchhhHHHHHhhhCCc---c-------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhh
Confidence 5555566666666677778888876633 2 3457788888888 999999999 887 55 76666543
No 131
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.26 E-value=0.00046 Score=71.34 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=118.0
Q ss_pred hhhhhhc---hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc
Q 035916 8 DVFVAFV---FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK 84 (506)
Q Consensus 8 ~~fs~yg---~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~ 84 (506)
.-.+|+. .+.+..++.+++|+|+.|.+.++..=.....+.=+.-|++.|| +|-|++-.++.++..+=.+.++.+..
T Consensus 23 f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~ 101 (417)
T COG2223 23 FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVT 101 (417)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445666 3678889999999999999999999999999999999999999 68888888888888777777776643
Q ss_pred ccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHH-HHH---
Q 035916 85 PECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAF-LFI--- 160 (506)
Q Consensus 85 ~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~iiG~~i~~~~-~~i--- 160 (506)
. .+.+.+.+.-++++++-|-+ +...++.+.-|++++ ...+..++=+.++|..+...+ +.+
T Consensus 102 ~-----~~~~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~----------qG~AlGI~g~GN~G~av~q~~~P~v~~~ 165 (417)
T COG2223 102 Y-----PSTWQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK----------QGLALGIAGAGNLGVAVAQLVAPLVAVA 165 (417)
T ss_pred C-----CchHHHHHHHHHHhccccee-hcccccccccCChhh----------hhHHHHHhccccccHHHHHHHHHHHHHH
Confidence 2 22345555555666665443 445556666664432 345666766455888877777 666
Q ss_pred hh---hhHHHHHHHHHHHHHHHHHHhcCc
Q 035916 161 KS---WKIKFGILAMFTTVSTLVFLSGSS 186 (506)
Q Consensus 161 ~g---~~~~F~i~~~~~~~~~~~f~~~~~ 186 (506)
.| |+..-.+-.+.++++.+.+.+..+
T Consensus 166 ~g~~~w~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 166 FGFLAWRNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66 899888888888887777766543
No 132
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=98.26 E-value=1.4e-05 Score=84.41 Aligned_cols=136 Identities=12% Similarity=0.138 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccc
Q 035916 31 VHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGH 110 (506)
Q Consensus 31 ~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~ 110 (506)
...+.+.+.......++-++.|+++|| +|||+++.++.++..++..++...... ....+.+++...+.+++.+..
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~~----~~~~~~l~l~~~l~g~~~~~~ 325 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDPE----YFGYALLFLSMIVYGCAFDFF 325 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCcc----hhhHHHHHHHHHHHHHHHHHH
Confidence 455777777777788888999999999 799999999999998887666653110 012345667778889999888
Q ss_pred cccchhhhhcccccCCccccccccccchhHHHHHH-HHH-HHHHHHHHH-HHH---h------hhhHHHHHHHHHHHHHH
Q 035916 111 MGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWG-LSL-VPNILSIAF-LFI---K------SWKIKFGILAMFTTVST 178 (506)
Q Consensus 111 k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y-~~i-iG~~i~~~~-~~i---~------g~~~~F~i~~~~~~~~~ 178 (506)
.++...++.|.++++ ++.+.+++.+ ... +|..+++.+ +++ . ||+..|.++++..+++.
T Consensus 326 ~~~~~~~i~~~~p~~----------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~ 395 (418)
T TIGR00889 326 NISGSVFVEKEVPVH----------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILA 395 (418)
T ss_pred HHHHHHHHHHHCCHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 899999999877432 2457888886 567 899999998 777 2 58999988777766555
Q ss_pred HHH
Q 035916 179 LVF 181 (506)
Q Consensus 179 ~~f 181 (506)
+++
T Consensus 396 ~l~ 398 (418)
T TIGR00889 396 VLF 398 (418)
T ss_pred HHH
Confidence 543
No 133
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=98.26 E-value=6.3e-06 Score=84.65 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=97.5
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhh-hhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVI-KFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~-~~l~~~~~~~~~~~~~~~ 94 (506)
..+..|+++++|.+..+++.+.........+..+++|+++|| +|||+.+..+..+..+.. .++..... ..+..
T Consensus 240 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 313 (394)
T TIGR00883 240 TYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLD-----SGSFT 313 (394)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhc-----CCchH
Confidence 445677878899999999999998888899999999999999 799998876655443322 22211110 01334
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHH-HHHHH-HHHHHHHHH-HHH---hh-hhHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSF-WGLSL-VPNILSIAF-LFI---KS-WKIKF 167 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~-~y~~i-iG~~i~~~~-~~i---~g-~~~~F 167 (506)
.+.....+.+++.+...+...++..|.++++. |.+.++. +..+. +|..+++.+ +++ .| |+..+
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~ 383 (394)
T TIGR00883 314 LFFFLVLGLALIGGMYTGPMGSFLPELFPTEV----------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIG 383 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc----------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHH
Confidence 55566777888888889999999998875432 1233444 33556 888888888 776 45 66655
Q ss_pred HHHHHH
Q 035916 168 GILAMF 173 (506)
Q Consensus 168 ~i~~~~ 173 (506)
...++.
T Consensus 384 ~~~~~~ 389 (394)
T TIGR00883 384 YYLAAL 389 (394)
T ss_pred HHHHHH
Confidence 544443
No 134
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.24 E-value=0.0033 Score=67.59 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcch
Q 035916 403 FWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSR 482 (506)
Q Consensus 403 ~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~ 482 (506)
+|..- ++.|+.--=..+..=+++.+..|++..+...|+|.++.=.+.++|+.+++++...|.+ .|
T Consensus 383 f~~~a--~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~-------------~r 447 (477)
T PF11700_consen 383 FWVLA--VLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS-------------QR 447 (477)
T ss_pred HHHHH--HHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------ch
Confidence 44443 3566666666777888999999999999999999999999999999999998876621 11
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 035916 483 LDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 483 l~~~~~lla~l~~v~~~~f~~ 503 (506)
+=+..+.++.++.++++..
T Consensus 448 --~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 448 --YGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred --hHHHHHHHHHHHHHHHHhh
Confidence 1245556666666666544
No 135
>PRK09528 lacY galactoside permease; Reviewed
Probab=98.24 E-value=9.8e-06 Score=85.31 Aligned_cols=145 Identities=8% Similarity=0.023 Sum_probs=103.8
Q ss_pred HHHHHhhhc---cChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 18 MMDYLTEVW---MISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 18 l~~yl~~~l---~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
+..|+.+.+ +.+..+.+.+.+.......++.+++|+++|| +|||+.+.++..+..++.+++.... +.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~--------~~~ 316 (420)
T PRK09528 246 FPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFAT--------GPL 316 (420)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcc--------cHH
Confidence 345555443 4555667788887777777889999999999 8999999999998888877776552 345
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHH-HHHHH-HHHHHHHHH-HHH---hhhhHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSF-WGLSL-VPNILSIAF-LFI---KSWKIKFG 168 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~-~y~~i-iG~~i~~~~-~~i---~g~~~~F~ 168 (506)
.++....+.+++.+...+....++.|.++++. +...+.. +.... +|..+++.+ +++ .||+..|.
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~ 386 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRL----------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYL 386 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHH
Confidence 55666777788887777777777777664322 1223333 34566 999999888 887 79999999
Q ss_pred HHHHHHHHHHHHH
Q 035916 169 ILAMFTTVSTLVF 181 (506)
Q Consensus 169 i~~~~~~~~~~~f 181 (506)
+.++..++..++.
T Consensus 387 ~~~~~~~i~~~~~ 399 (420)
T PRK09528 387 ILGGIVLLFTLIS 399 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 8777665555433
No 136
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=98.21 E-value=1.9e-05 Score=84.53 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=93.4
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
.+..|+++.+|++..+++.....+.....++.+++|+++|| +|||+.+..+.....++..++.... ..+....
T Consensus 280 ~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 352 (467)
T PRK09556 280 WSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQH------ATSEYMY 352 (467)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHh------cCcHHHH
Confidence 35568888999999999999988888899999999999999 6998887665544444332222211 0122333
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-H-HHHHHHHH-HHH-h-----------
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-V-PNILSIAF-LFI-K----------- 161 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-i-G~~i~~~~-~~i-~----------- 161 (506)
++.+.+.+++..+..........|.+++ + .+........... + |..+++.+ +++ -
T Consensus 353 ~~~~~~~G~~~~~~~~~~~~~~~~~~p~----~------~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~ 422 (467)
T PRK09556 353 LASLFALGFLVFGPQLLIGVAAVGFVPK----K------AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGY 422 (467)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhcch----h------hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccc
Confidence 4444444433222222222444555532 1 2345666655554 4 65777776 666 3
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHH
Q 035916 162 ---SWKIKFGILAMFTTVSTLVFL 182 (506)
Q Consensus 162 ---g~~~~F~i~~~~~~~~~~~f~ 182 (506)
||+.+|.+.+++.+++.+..+
T Consensus 423 ~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 423 TLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccChHHHHHHHHHHHHHHHHHHH
Confidence 489999888777777765444
No 137
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.18 E-value=1.5e-05 Score=84.01 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=94.5
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
|++..++ +...++.+.........++.++.|+++|| +|||+++..+..+..++.+++.+.. .+.+...+..
T Consensus 248 ~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 318 (437)
T TIGR00792 248 YFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAG-------SNLPLILVLI 318 (437)
T ss_pred eEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcc-------hhHHHHHHHH
Confidence 3444455 45566667777777788889999999999 7999999999998888877765542 1334556667
Q ss_pred HHHHhhcccccccchhhhhcccccCCcc-ccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREE-EFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~-~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.+.++|.|...+...++.+|..+.++.+ .+| +...+++.+.++. +|..+++.+ +++
T Consensus 319 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 319 ILAGFGQNFVTGLVWALVADTVDYGEWKTGVR----AEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcc----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999987654311 111 4567788888888 999999888 766
No 138
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.18 E-value=1.3e-05 Score=85.70 Aligned_cols=149 Identities=9% Similarity=-0.052 Sum_probs=106.9
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc-CchhHHHHHHH--HHHHhhhhhhcccccccccCCch
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT-ISKYWMILVSS--FAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~-lGr~~ti~~~~--~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
..+..|++ +.|++..+++.+.+.......++.+++|+++||. .++++...++. ++..++.+++... .+
T Consensus 262 ~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--------~~ 332 (455)
T TIGR00892 262 IFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--------GD 332 (455)
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--------ch
Confidence 34556665 4799999999999998888888889999999984 34444343333 3333333333322 23
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---h-hhhHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---K-SWKIK 166 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~-g~~~~ 166 (506)
.+.+++..++.+++.|...++..+...|.++++ ++...++.+.... +|..+++.+ +++ . +|+..
T Consensus 333 ~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~----------~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~ 402 (455)
T TIGR00892 333 YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ----------RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYI 402 (455)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH----------HHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchH
Confidence 455677788889999999999999999877432 2346788888888 999999999 777 4 59999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035916 167 FGILAMFTTVSTLVFLS 183 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~~ 183 (506)
|.++++..+++.+....
T Consensus 403 f~~~~~~~li~~~~~~~ 419 (455)
T TIGR00892 403 FYASGSIVVSAGLFLAI 419 (455)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99988877766554333
No 139
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=98.15 E-value=5.6e-05 Score=80.73 Aligned_cols=144 Identities=8% Similarity=-0.064 Sum_probs=94.9
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHH
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTAL 100 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l 100 (506)
++.+++|.+...+............++.+++|+++|| +|||+.++.+..+..++.+++....... ........++
T Consensus 296 ~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~----~~~~~~~~~~ 370 (479)
T PRK10077 296 EIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSM 370 (479)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcC----cccHHHHHHH
Confidence 3345678887777766666777778889999999999 7999999999999999887765432110 0111223344
Q ss_pred HHHHhhccc-ccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HH------H---hhhhHHHH
Q 035916 101 GLIAFGISG-HMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LF------I---KSWKIKFG 168 (506)
Q Consensus 101 ~l~~~G~g~-~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~------i---~g~~~~F~ 168 (506)
.+.+.+.+. ..|+..++..|.+++ + +|.....+.+... +|..+++.+ +. + .+|+..|.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~e~~p~---~-------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 440 (479)
T PRK10077 371 LFYVAAFAMSWGPVCWVLLSEIFPN---A-------IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW 440 (479)
T ss_pred HHHHHHHhccccchhHHHhHhhCCh---h-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHH
Confidence 444444443 457888888887632 2 3457788877777 777777555 43 2 56777777
Q ss_pred HHHHHHHHHHH
Q 035916 169 ILAMFTTVSTL 179 (506)
Q Consensus 169 i~~~~~~~~~~ 179 (506)
+.++..+++.+
T Consensus 441 ~~~~~~~~~~~ 451 (479)
T PRK10077 441 IYGCMGVLAAL 451 (479)
T ss_pred HHHHHHHHHHH
Confidence 76555444444
No 140
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.15 E-value=6.4e-05 Score=77.95 Aligned_cols=152 Identities=13% Similarity=0.055 Sum_probs=105.2
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+++.-|++.+..+.+.-.|.....++.++||.++|| +.++++.....+..+..+.+...+ .+.+.
T Consensus 232 tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~-------~~~~~ 302 (394)
T COG2814 232 TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTG-------ASPAL 302 (394)
T ss_pred HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhc-------chHHH
Confidence 667788899999999999999999999999999999999999 899999988888888777777663 23344
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHH----HHHHH-HHHHHHHHH-HHHhhhhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSF----WGLSL-VPNILSIAF-LFIKSWKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~----~y~~i-iG~~i~~~~-~~i~g~~~~F~i 169 (506)
....+.+.+++.+..-.....-.++ ..||. .+..-+. |+.++ +|+.+|-.+ .. .|+.....+
T Consensus 303 ~~~~~~~wg~a~~~~~~~~~~~~a~----~~p~~-------~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~~~~ 370 (394)
T COG2814 303 ALALLFLWGFAFSPALQGLQTRLAR----LAPDA-------ADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAATGWV 370 (394)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhcc----cCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHH
Confidence 4445555555554433333333333 12221 1233333 44555 555555444 33 789999999
Q ss_pred HHHHHHHHHHHHHhcCcce
Q 035916 170 LAMFTTVSTLVFLSGSSSY 188 (506)
Q Consensus 170 ~~~~~~~~~~~f~~~~~~~ 188 (506)
+++..+++.++.+...++.
T Consensus 371 ~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 371 GAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999988888776655543
No 141
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.15 E-value=4.4e-05 Score=81.99 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=119.0
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchh--HHHHHHHHHHHh-hhhhhcccccccccCCch
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKY--WMILVSSFAYTA-VIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~--~ti~~~~~~~~i-G~~~l~~~~~~~~~~~~~ 92 (506)
+.-..|.++.+|++..+-..+.-..+..+.+++++.|++.|| +|.| ++++.+..+..+ ....+. .-.+......+
T Consensus 302 ~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~-G~~~~~~g~~~ 379 (477)
T PF11700_consen 302 SFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLF-GFWPSFFGLKS 379 (477)
T ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHH-HhhhcccCccc
Confidence 445678889999999999999999999999999999999999 8999 888888776633 211111 00000000123
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIK 166 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~ 166 (506)
.+.+++.=++.++..|...+..-++.++..+++. ...+|+.|..+- ..+.+||++ +.+ .+.|.+
T Consensus 380 ~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~----------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g 449 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR----------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYG 449 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH
Confidence 4556666668999999999999999998886633 247899999999 999999999 777 458899
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035916 167 FGILAMFTTVSTLVFLS 183 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~~ 183 (506)
|....+.++++++++..
T Consensus 450 ~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 450 FLFLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 98888888888876643
No 142
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.14 E-value=2.6e-05 Score=82.67 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=88.3
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCch--hHHHHH---HHHHHHhhhhhhcccccccccCCch
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISK--YWMILV---SSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr--~~ti~~---~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
+..|+++++|++..+++.....+.....++.+++|+++||+.+| ++.... +..+..++...+.. .+
T Consensus 266 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---------~~ 336 (434)
T PRK11663 266 GNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF---------AS 336 (434)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc---------cc
Confidence 45677788899999999999999999999999999999995332 222222 22222222211111 11
Q ss_pred HHHHHHHHHHHHhhcccccc--cchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhH
Q 035916 93 KILLYTALGLIAFGISGHMG--SIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKI 165 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~--~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~ 165 (506)
...... .+.++|.+..-| ......+|.++ ++ ++.....+.+... +|..+++.+ +++ .||..
T Consensus 337 ~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~---~~-------~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 404 (434)
T PRK11663 337 YVMQAA--CFFTIGFFVFGPQMLIGMAAAECSH---KE-------AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTG 404 (434)
T ss_pred HHHHHH--HHHHHHHHHhhHHHHHHHHHHhccc---Hh-------hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHH
Confidence 122222 222333322222 22333444432 22 3457788888888 999999988 877 78999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 035916 166 KFGILAMFTTVSTLVFLS 183 (506)
Q Consensus 166 ~F~i~~~~~~~~~~~f~~ 183 (506)
.|.+.+++.+++.++.+.
T Consensus 405 ~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 405 FFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 998887776666554443
No 143
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.14 E-value=4.6e-05 Score=82.33 Aligned_cols=150 Identities=7% Similarity=-0.041 Sum_probs=98.2
Q ss_pred HHHHHHhhhccChhHHHHHHHHHH-HHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhh---cccccccccCCch
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIF-WGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFL---FYDYKPECIGEGQ 92 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~-~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l---~~~~~~~~~~~~~ 92 (506)
....|+.+++|++.++.+.+.... .....++.+++|+++|| +||+|.+.++..+..++.+.. .... .+
T Consensus 244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr-~g~~~~l~i~~~l~~l~~l~~~~l~~~~-------~~ 315 (491)
T PRK11010 244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQR-LSLFRALMIFGILQGVSNAGYWLLSITD-------KN 315 (491)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhcc-------cc
Confidence 345677778999999999987544 46778899999999999 799998887766555443222 2221 12
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKF 167 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F 167 (506)
...+.....+..+..|...+...++..+..+++-+ ...+...+... +|..++..+ +++ .||+..|
T Consensus 316 ~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~----------~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f 385 (491)
T PRK11010 316 LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFS----------ATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFY 385 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 23333344443433444445556666665544332 24477777777 887766556 766 7899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 035916 168 GILAMFTTVSTLVFLSG 184 (506)
Q Consensus 168 ~i~~~~~~~~~~~f~~~ 184 (506)
.+.+++.+.+++.....
T Consensus 386 ~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 386 LFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888877776655443
No 144
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.13 E-value=2.4e-05 Score=79.31 Aligned_cols=135 Identities=11% Similarity=-0.021 Sum_probs=103.1
Q ss_pred HHHHHhhh--ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 18 MMDYLTEV--WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 18 l~~yl~~~--l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+..|+++. +|++..+++...+.+.+...++.+++++++|| +|++|.+.++..+..++.++..... ...
T Consensus 163 ~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~--------~~~- 232 (310)
T TIGR01272 163 LVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTH--------GYV- 232 (310)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcC--------CHH-
Confidence 67788753 79999999999999999999999999999999 8999999998888887765544331 112
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
...+..+++++.+.+.|++.+...+.++++.. ..+.. ...- +|.++.|.+ +.+ .|.+.+|.++
T Consensus 233 ~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~---------~asai---~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~ 300 (310)
T TIGR01272 233 AMWFVLALGLFNSIMFPTIFSLALNALGRHTS---------QGSGI---LCLAIVGGAIVPLLQGSLADCLGIQLAFALP 300 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---------hhHHH---HHHHHhcchHHHHHHHHHHHhccchHHHHHH
Confidence 23466689999999999999999887755321 12322 2345 888888887 877 7888888866
Q ss_pred HHHH
Q 035916 171 AMFT 174 (506)
Q Consensus 171 ~~~~ 174 (506)
.++.
T Consensus 301 ~~~~ 304 (310)
T TIGR01272 301 VPCY 304 (310)
T ss_pred HHHH
Confidence 6554
No 145
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.12 E-value=5.5e-05 Score=79.24 Aligned_cols=154 Identities=13% Similarity=0.029 Sum_probs=100.2
Q ss_pred hhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHH-HHHHHHHhhhhhhccccccccc
Q 035916 11 VAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMIL-VSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 11 s~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~-~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
++++. ..+..|+ +++|++..+++.+.........++.++.|+++|| +|||+.+. .+.....++.+.+......
T Consensus 237 ~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~~--- 311 (402)
T TIGR00897 237 GLFGFAVFLPMFV-AELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQH--- 311 (402)
T ss_pred HHHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 34443 3344566 5589999999998888888899999999999999 79988764 3333333332222211000
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhh
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSW 163 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~ 163 (506)
...+.....+...+.+++.+..-|. .+...+. +|+ ++...+++++... +|..+++.+ +++ .||
T Consensus 312 ~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~----~~~-------~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~ 379 (402)
T TIGR00897 312 FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTL----APK-------HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA 379 (402)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh----Ccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 0112344455666677777766443 3443332 232 3458899999999 999999988 777 788
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 035916 164 KIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 164 ~~~F~i~~~~~~~~~~~f 181 (506)
...|.+.+++.+++.++.
T Consensus 380 ~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 380 IGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877766655543
No 146
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=98.12 E-value=3.4e-05 Score=82.21 Aligned_cols=147 Identities=14% Similarity=0.085 Sum_probs=87.8
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccC-chhHHH-HHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTI-SKYWMI-LVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~l-Gr~~ti-~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
.+..|++++.|++..+++.+...+.....++.+++|+++||+- ||++.. .....+..++.+.+.+.. ..+..
T Consensus 275 ~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~------~~~~~ 348 (452)
T PRK11273 275 WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP------AGNPT 348 (452)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc------ccChH
Confidence 3557788888999999988888888888889999999999942 555432 333333344433332221 01222
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHH-HHHHHH-HHH---hhhhHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPN-ILSIAF-LFI---KSWKIKFG 168 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~-~i~~~~-~~i---~g~~~~F~ 168 (506)
.....+.+++.+..+.-+....+..|.+++ + ++.+.++++.... +|+ ++++.+ +++ .||+.+|.
T Consensus 349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~----~------~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~ 418 (452)
T PRK11273 349 VDMACMIVIGFLIYGPVMLIGLHALELAPK----K------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 418 (452)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCh----h------hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHH
Confidence 233333333333222112223344444422 2 3457788887777 765 457777 777 78999998
Q ss_pred HHHHHHHHHHH
Q 035916 169 ILAMFTTVSTL 179 (506)
Q Consensus 169 i~~~~~~~~~~ 179 (506)
+.++..+++.+
T Consensus 419 ~~~~~~~~~~~ 429 (452)
T PRK11273 419 VMIGGSILAVI 429 (452)
T ss_pred HHHHHHHHHHH
Confidence 87776666654
No 147
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.12 E-value=4.2e-05 Score=79.52 Aligned_cols=144 Identities=11% Similarity=0.007 Sum_probs=96.1
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|+++..|++..+++.+...+.....++.++.|+++|| +|+++.+.++..+..++.+++.... .+.+...
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r-~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~ 293 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGR-YSPLRIAAVTDFIIVLALLMLFFFG-------GMKTASL 293 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccc-cCchhHHHHHHHHHHHHHHHHHHHH-------hhHHHHH
Confidence 4457777789999999999999999999999999999999 7999999999888888875554321 1223334
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILA 171 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~ 171 (506)
+...+.+.|.++.-+.......+.. .+++ ..... ...... +|..+|+.+ +++ .||+..+.+.+
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~------~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~ 362 (382)
T PRK10091 294 IFAFICCAGLFALSAPLQILLLQNA---KGGE------LLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAA 362 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhC---Ccch------HHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHH
Confidence 4444555555444443333333322 1111 11222 224556 899999888 776 57899998887
Q ss_pred HHHHHHHHH
Q 035916 172 MFTTVSTLV 180 (506)
Q Consensus 172 ~~~~~~~~~ 180 (506)
+...++...
T Consensus 363 ~~~~~~~~~ 371 (382)
T PRK10091 363 LLSFAAMSS 371 (382)
T ss_pred HHHHHHHHH
Confidence 666555443
No 148
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.07 E-value=8.3e-05 Score=77.35 Aligned_cols=143 Identities=15% Similarity=0.016 Sum_probs=107.9
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+++ +|.+..+.+.+.........+..++.|.+.|| +|+++.+.++.....++.+++... .+.+.
T Consensus 226 ~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~--------~~~~~ 295 (382)
T TIGR00902 226 GFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAI--------EAFPL 295 (382)
T ss_pred HHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhH--------hhHHH
Confidence 445667754 89999999999888888888888899999999 799999999999999998877654 24566
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHH-HHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWG-LSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y-~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
++..-.+-+++.|..-+....++.|+ ++++ +......+. .+. +|..+++.+ +++ .|+ ..|.+
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~----------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~ 363 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE----------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVF 363 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHH
Confidence 67777889999999999998888864 3322 224445444 356 888989988 888 565 55666
Q ss_pred HHHHHHHHHHH
Q 035916 170 LAMFTTVSTLV 180 (506)
Q Consensus 170 ~~~~~~~~~~~ 180 (506)
.++..++++++
T Consensus 364 ~~~~~~~~~~~ 374 (382)
T TIGR00902 364 MAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHH
Confidence 66665555543
No 149
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.07 E-value=3.3e-05 Score=82.52 Aligned_cols=130 Identities=10% Similarity=0.072 Sum_probs=99.3
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+++.+|++..+++.+.........++.+++|++.|| +|||+.+.++..+..+|..++.....+ ..+...
T Consensus 276 ~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~ 350 (485)
T TIGR00711 276 YLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDK-IDPRKLVTIGLILYAVGFYWRAFTFTP----DTPFLA 350 (485)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHhccCCC----CCCHHH
Confidence 445678888899999999999999988899999999999999 799999999999888888776632111 123445
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
......+.++|.|..-+.......+..++ + ++......+.... +|..+|+.+ +.+
T Consensus 351 ~~~~~~l~g~g~~~~~~~~~~~~~~~~~~---~-------~~g~~~~~~~~~~~~g~~ig~~i~g~~ 407 (485)
T TIGR00711 351 IALPQFIRGFGMGCFFMPLTTIALSGLPP---H-------KIARGSSLSNFTRQLGGSIGTALITTI 407 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCH---H-------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888999988877777766655422 2 3457778888888 888888777 554
No 150
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.07 E-value=4.3e-05 Score=82.17 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=91.6
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhH-------HHHHHHHHHHhhhhhhcccccccccCC
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYW-------MILVSSFAYTAVIKFLFYDYKPECIGE 90 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~-------ti~~~~~~~~iG~~~l~~~~~~~~~~~ 90 (506)
+..|+.+++|++..+++.+...+.....++.+++|+++|| +|||+ .+.+...+..++.+++...
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-------- 345 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDV-AARRFGMRGRLWALWIVQTLGGVFCIWLGRA-------- 345 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHhcCcchhHHHHHHHHHHHHHHHHHhccc--------
Confidence 4567778899999999999999999999999999999999 67652 2222222222222222222
Q ss_pred chHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHH
Q 035916 91 GQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIK 166 (506)
Q Consensus 91 ~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~ 166 (506)
.+.....+.+++.+++.++..+...+...+.. ++ .+.....+....- +|+.+++.+ ..- .+|+.+
T Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~-------~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~ 414 (476)
T PLN00028 346 NSLGAAIVVMILFSIFVQAACGATFGIVPFVS----RR-------SLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETG 414 (476)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccCcccC----hh-------hchhhhhhhhccccHHHHHHHHHHHhcCCccHhhH
Confidence 12333444555556655555454444444322 22 2334555555555 666666555 321 469999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 035916 167 FGILAMFTTVSTLVFLSGS 185 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~~~~ 185 (506)
|.+.++.++++.++.++.+
T Consensus 415 f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 415 ISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 9998888888877665543
No 151
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.06 E-value=0.00028 Score=75.05 Aligned_cols=149 Identities=13% Similarity=0.001 Sum_probs=104.3
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccC----chhHHHHHHHHHHHhhhhhhcccccccccCCchH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTI----SKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQK 93 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~l----Gr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~ 93 (506)
...|+++++|++.++.+.+.+... .=...-++-|.++|.+- -||.=++++..+..++.+.+++.+.. ..+.
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~-lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~----~~s~ 86 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLAS-LPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS----ESSA 86 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh-CchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc----cchh
Confidence 456888999999998776554443 33445678899999962 35556677777776655555544221 1233
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFG 168 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~ 168 (506)
....+.+.+..+|.....-...++..|.-++++.+ +...-++.|.+. +|++++..+ +++ .+++..|.
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~--------~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~ 158 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPES--------RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFL 158 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch--------hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEeh
Confidence 44556777889999999999999999877554432 345668888899 999999888 666 77888888
Q ss_pred HHHHHHHHHHH
Q 035916 169 ILAMFTTVSTL 179 (506)
Q Consensus 169 i~~~~~~~~~~ 179 (506)
+++....+..+
T Consensus 159 i~~~~~~l~~~ 169 (433)
T PF03092_consen 159 ISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHH
Confidence 87766555543
No 152
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.04 E-value=0.00012 Score=76.63 Aligned_cols=128 Identities=13% Similarity=0.026 Sum_probs=94.5
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
...|+.+.+|++..+.+...........++.++.|+++|| +||++.+.++..+..+|..++.....+. ......+.
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~ 313 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSR-RPLRSLIRMGLWPMVAGLLLAALATVIS---SHAYLWLT 313 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHHH
Confidence 3456677889999888887776767777888999999999 7999999999888888877766542110 12344567
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
++..+.++|.|...|...+..-+.. ++ ++.+..+.+++.. +|..+|+.+ +.+
T Consensus 314 ~~~~~~g~g~~~~~~~~~~~~~~~~----~~-------~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 314 AGLSLYAFGIGLANAGLYRLTLFSS----DV-------SKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhc----cc-------cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888899999988877766553321 12 3457788888888 888888888 666
No 153
>PRK15075 citrate-proton symporter; Provisional
Probab=98.03 E-value=8.6e-05 Score=78.67 Aligned_cols=128 Identities=9% Similarity=-0.075 Sum_probs=81.9
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHh-hhhhhc-ccccccccCCchH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTA-VIKFLF-YDYKPECIGEGQK 93 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~i-G~~~l~-~~~~~~~~~~~~~ 93 (506)
..+..|+++.+|++..+++.+...+.....++.+++|+++|| +|||+.+..+..+..+ +...+. .... ...
T Consensus 259 ~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 331 (434)
T PRK15075 259 VYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVAA------PSF 331 (434)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHcC------Cch
Confidence 345677888889999988888877777788899999999999 7999988776554432 221111 1111 112
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHH-HH-HHHHHHHHH-HHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGL-SL-VPNILSIAF-LFI 160 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~-~i-iG~~i~~~~-~~i 160 (506)
........+.+++.|...+...++..|.++++ +|...+.+.|- .. +++.+++.+ +++
T Consensus 332 ~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~----------~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 332 ARMLAVELWLSFLYGSYNGAMVVALTEVMPAE----------VRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC----------ccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 22333445556677777777777888777432 23355666443 33 556667777 666
No 154
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.02 E-value=0.00012 Score=75.23 Aligned_cols=127 Identities=6% Similarity=-0.053 Sum_probs=90.0
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..|+++++|.++.+++.+.........++.+++|++.|| +|||+.+..+..+..++.+++.....+. .........
T Consensus 230 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 305 (385)
T TIGR00710 230 PFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKK-WGAKSLLRMGLILFAVSAVLLEITAILG---LGSWAMIIG 305 (385)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHH
Confidence 456777899999999999999988899999999999999 7999999998888887766665432110 012334455
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH--HHHHHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL--VPNILSIAFLFI 160 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i--iG~~i~~~~~~i 160 (506)
...+.++|.+...+...+...|..+ ++ +.+..+.+.... +|++.++.++.+
T Consensus 306 ~~~~~g~~~~~~~~~~~~~~~~~~~----~~-------~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 306 PMMFVGIGNSMISSIAMAYALEDFP----HV-------AGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCc----cc-------chHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888887776542 21 234566555554 566666665544
No 155
>PRK09848 glucuronide transporter; Provisional
Probab=98.02 E-value=4.4e-05 Score=81.22 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=94.9
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..|+++.+|.+...++...........++.++.++++|| +|+|+++.+|..+..+|.+++.... ..+.+.++.
T Consensus 252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~------~~~~~~~~~ 324 (448)
T PRK09848 252 LFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVS------VWSLPVALV 324 (448)
T ss_pred eeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcC------chhHHHHHH
Confidence 345566788776655544443344466678889999999 7999999999999888887776542 123455667
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccc-cccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEE-FSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~-~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
++.+.++|.+...+...++.+|..|+++-+. +| +....++.+-++. +|..+++.+ +.+
T Consensus 325 ~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r----~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 325 ALAIASIGQGVTMTVMWALEADTVEYGEYLTGVR----IEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCcc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999998776533211 11 3456677888888 999999887 555
No 156
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.02 E-value=6.8e-05 Score=79.27 Aligned_cols=134 Identities=16% Similarity=0.048 Sum_probs=105.0
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|.+..+|.+ ...+.+.........++.++.++++|| +||||++..+..+..++.+++.+... .+.+.
T Consensus 246 ~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 317 (428)
T PF13347_consen 246 TFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGP------GSPWL 317 (428)
T ss_pred hHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHh------hhHHH
Confidence 34556777778777 456666777778888888999999999 79999999999999999888777631 35677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+++...+.++|.|...+...++.+|..|+++-+..+ |+....++.+-+.. +|..++..+ +.+
T Consensus 318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~---r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGR---RREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred HHHHHHHhHhhhcccccccccccccchhhHHHhcCC---CchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 888889999999999999999999999765432111 13556777778888 999998887 555
No 157
>PRK10504 putative transporter; Provisional
Probab=98.01 E-value=0.00012 Score=78.23 Aligned_cols=127 Identities=11% Similarity=0.016 Sum_probs=94.4
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
...|++..+|.+..+++.+.........+..++.|.++|| +|||+++..+..+..++..++...... .....+.
T Consensus 284 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 357 (471)
T PRK10504 284 TPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNR-FGYRRVLVATTLGLALVSLLFMLVALL-----GWYYLLP 357 (471)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHhcccc-----ccHHHHH
Confidence 3456666789999999988888888788788899999999 699999999988887776665543211 1223334
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
...++.++|.|...+...++..+..+++ .+...++++.... +|..+|+.+ +.+
T Consensus 358 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 358 FVLFLQGMVNSTRFSSMNTLTLKDLPDN----------LASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHH----------hccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888887765432 2346788888888 999999888 655
No 158
>PRK10133 L-fucose transporter; Provisional
Probab=98.00 E-value=7.8e-05 Score=79.34 Aligned_cols=141 Identities=11% Similarity=-0.011 Sum_probs=101.1
Q ss_pred HHHHH-hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHH
Q 035916 18 MMDYL-TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILL 96 (506)
Q Consensus 18 l~~yl-~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~ 96 (506)
+..|+ ++.+|++..+++.....+.....++.+++|+++|| +||||++..+..+..++..+..+.. .. .-
T Consensus 281 ~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~--------~~-~~ 350 (438)
T PRK10133 281 LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG--------GH-VG 350 (438)
T ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC--------Ch-HH
Confidence 44564 56789999999999999999999999999999999 7999999998887776655544331 11 22
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHH-HHH---hh-hhHHHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAF-LFI---KS-WKIKFGILA 171 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~iiG~~i~~~~-~~i---~g-~~~~F~i~~ 171 (506)
..++.+.++|.|.+-|+..+...+.++++.. .-..... +..+|..+++.+ +++ .| -+.+|.++.
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~--------~as~l~~---~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~ 419 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQDTK--------YGSSFIV---MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhc--------cchhHHh---HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 4567789999999999999999988755321 1122222 233455555444 766 55 678888777
Q ss_pred HHHHHHHH
Q 035916 172 MFTTVSTL 179 (506)
Q Consensus 172 ~~~~~~~~ 179 (506)
++.+....
T Consensus 420 ~~~~~~~~ 427 (438)
T PRK10133 420 LCFAVIFI 427 (438)
T ss_pred HHHHHHHH
Confidence 66654443
No 159
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.97 E-value=0.029 Score=58.27 Aligned_cols=332 Identities=12% Similarity=0.002 Sum_probs=173.6
Q ss_pred HhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc---CchhHH--HHHHHHHHHhhhhhhcccccc-cc-----cCC
Q 035916 22 LTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT---ISKYWM--ILVSSFAYTAVIKFLFYDYKP-EC-----IGE 90 (506)
Q Consensus 22 l~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~---lGr~~t--i~~~~~~~~iG~~~l~~~~~~-~~-----~~~ 90 (506)
+..+|+.+..-.+..+..-..... .-+.-|+.+|++ +|.||| |..|..+...|..+...+... .. ...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 456788876666666666555444 345778999984 233555 455666666666555443221 00 011
Q ss_pred chHH--HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhh
Q 035916 91 GQKI--LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSW 163 (506)
Q Consensus 91 ~~~~--~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~ 163 (506)
...+ ...++..++++|.+.......++.+|.-+|+ +|.+..+.-|... +|..++.++ +.+ ++.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~----------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~ 154 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE----------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP 154 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh----------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 1122 3334556678888888888899999866442 2446778888888 999988887 655 222
Q ss_pred hHHH-H---HHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCC
Q 035916 164 KIKF-G---ILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSR 239 (506)
Q Consensus 164 ~~~F-~---i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 239 (506)
.-.. . ++.+.+.+.++-.+-..+++.+.. ..+ +.+
T Consensus 155 ~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~----------------------~~~-------------------~~~ 193 (403)
T PF03209_consen 155 ERLIQVIQGVALIALLLNLIALWGQEPRRSRRA----------------------AAA-------------------ERP 193 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccc----------------------cCC-------------------CCC
Confidence 1111 1 122222222211111111110000 000 011
Q ss_pred CcchhhhhhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCC-CCce
Q 035916 240 GLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDG-GNFS 318 (506)
Q Consensus 240 ~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g-~~~~ 318 (506)
...+.+..... ..+ .+.++++.. +++...-| ..|.--++. +| .-+.
T Consensus 194 ~~~f~~a~~~~----------------~~~---~~a~~f~~f--l~l~t~a~-----------~~QD~iLEP-ygg~Vfg 240 (403)
T PF03209_consen 194 RPPFREAWRQV----------------WAS---PQARRFFVF--LFLGTLAF-----------FMQDVILEP-YGGEVFG 240 (403)
T ss_pred CccHHHHHHHH----------------HhC---CChhHHHHH--HHHHHHHH-----------HhhHHHcCC-chhHHcC
Confidence 11122211110 001 123333211 12222222 223222232 22 1244
Q ss_pred eChhhhhhhhHH---HHhHhhhhhhhhhhccccccccccccccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 035916 319 FGPLLLLLFYYI---SKGRFTAFYEGFVGHLTSVGWNAVAHVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKP 394 (506)
Q Consensus 319 ip~~~l~~~n~i---~iivl~Pl~~~~~~pl~~~~~r~~~~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~ 394 (506)
+|++.-..+|.+ -.++-..+-.+... +|. .+.+ -.+|....++++....+. +.
T Consensus 241 msv~eTT~Lta~~~~G~L~G~~~~g~~l~------~~~--~~~~~a~~G~~~~~~~f~lii~a-----------~~---- 297 (403)
T PF03209_consen 241 MSVGETTRLTAFWGGGTLLGMLLAGFLLS------RRL--GKKRTAALGCLLGALAFALIILA-----------GP---- 297 (403)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCC--CchHHHHHHHHHHHHHHHHHHHH-----------Hh----
Confidence 555553334433 33333334444443 222 2222 345666666665433222 10
Q ss_pred CCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccc
Q 035916 395 DEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIIS 465 (506)
Q Consensus 395 ~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t 465 (506)
.-+.+-+.+.-+++|++--+..++.+...-+.++++..|+.||+|-...+++..++..+.....++.
T Consensus 298 ----~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 298 ----LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred ----cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0134456677899999999999999999999999999999999999999888887777766655554
No 160
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.96 E-value=0.00024 Score=72.37 Aligned_cols=147 Identities=12% Similarity=-0.001 Sum_probs=101.1
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHH
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGL 102 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l 102 (506)
.++.|+++.+.+.++..-.+.+.+...+.|.++|| +||||.-+..+++|.++.+.-... +...+.+|+++
T Consensus 61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl~k~~~---------~~~~L~~GRvl 130 (354)
T PF05631_consen 61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCLTKHSS---------NYPVLLLGRVL 130 (354)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHhcc---------ccHHHHHHHHH
Confidence 35789999998888888888888888999999999 799999999999999886543322 56789999999
Q ss_pred HHhhcccccccchhhhhcccccCCccccccccccchhHHHHHH-HHH-HHHHHHHHH-HHH-----hhhhHHHHHHHHHH
Q 035916 103 IAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWG-LSL-VPNILSIAF-LFI-----KSWKIKFGILAMFT 174 (506)
Q Consensus 103 ~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y-~~i-iG~~i~~~~-~~i-----~g~~~~F~i~~~~~ 174 (506)
-++++.....+--+....+.++++-++. .+..-|+.-- +.+ +-+..+-.+ .++ .|....|..+.++.
T Consensus 131 gGiaTSLLfS~FEsW~V~Eh~~~g~~~~-----~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l 205 (354)
T PF05631_consen 131 GGIATSLLFSAFESWMVHEHNKRGFPQE-----WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLL 205 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChH-----HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 9999999888777766655544332111 2334444322 222 222222222 222 44577899888887
Q ss_pred HHHHHHHHhc
Q 035916 175 TVSTLVFLSG 184 (506)
Q Consensus 175 ~~~~~~f~~~ 184 (506)
.++.++....
T Consensus 206 ~~~~~~I~~~ 215 (354)
T PF05631_consen 206 AVAAVLILKT 215 (354)
T ss_pred HHHHHHHHhc
Confidence 7776654433
No 161
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.95 E-value=5.4e-05 Score=78.17 Aligned_cols=161 Identities=21% Similarity=0.203 Sum_probs=99.0
Q ss_pred hhhhhhhhch-hH---HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccC-chhHHH-HHHHHHHHhhhhhh
Q 035916 6 WSDVFVAFVF-WM---MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTI-SKYWMI-LVSSFAYTAVIKFL 79 (506)
Q Consensus 6 ~~~~fs~yg~-~~---l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~l-Gr~~ti-~~~~~~~~iG~~~l 79 (506)
.++-|-|... .. ..+|+.+..|+|..+|...++.|-.....++++.||++|+++ |||... +++++...++.+..
T Consensus 259 ~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~ 338 (448)
T COG2271 259 LANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLY 338 (448)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3444445442 22 357999999999999999999999999999999999999999 777755 34444555555555
Q ss_pred cccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-
Q 035916 80 FYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF- 157 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~- 157 (506)
..+. ..+..+..+.+.++++-.-+ |- -+++-+-.|..|++..+ .-..+-.+ ++. +|+..+...
T Consensus 339 w~~~------~~~~~l~~~~l~~iGf~IyG--Pq--mLiGl~a~e~~pK~AaG---tA~Gf~Gl--f~Yl~Ga~~a~~~~ 403 (448)
T COG2271 339 WLAP------NGSYLLDAILLFIIGFLIYG--PQ--MLIGLAAAEFVPKKAAG---TATGFVGL--FAYLIGAALAGLPL 403 (448)
T ss_pred HcCC------CccHHHHHHHHHHHHHHHhh--HH--HHHHHHHhccccHhhcc---chhchhhh--HHHHhhHHhcCCcc
Confidence 5552 23345444454445444433 33 23333333444543221 11122222 233 488777777
Q ss_pred HHH---hhhhHHHHHHHHHHHHHHHHH
Q 035916 158 LFI---KSWKIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 158 ~~i---~g~~~~F~i~~~~~~~~~~~f 181 (506)
+++ +||.-+|.+-.+..+++.+.+
T Consensus 404 g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 404 GYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred eeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 777 799999876555554444433
No 162
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=97.95 E-value=7.2e-05 Score=80.78 Aligned_cols=129 Identities=12% Similarity=-0.031 Sum_probs=98.5
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+++..|++..+++.....+.....++.+++|++.|| +|||+.+..+..+..+|.+++..... ..+.+.
T Consensus 280 ~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~ 353 (495)
T PRK14995 280 LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSR-LGLRLVATGGMALSALSFYGLAMTDF-----STQQWQ 353 (495)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHH
Confidence 345568888899999999999999999999999999999999 79999999898888888766554321 112344
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
......+.++|.|...+.......+..+++ ++......+.... +|..+|+.+ +.+
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPPE----------KAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCHH----------hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889999998887777777644322 2345677778888 998888877 555
No 163
>TIGR00895 2A0115 benzoate transport.
Probab=97.95 E-value=6.3e-05 Score=77.38 Aligned_cols=121 Identities=12% Similarity=-0.063 Sum_probs=89.9
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.|+.+++|++..+++.+.........++.+++|+++|| +||++.+.........+.++.... .+....+..
T Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 344 (398)
T TIGR00895 274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADR-LGPRVTALLLLLGAVFAVLVGSTL--------FSPTLLLLL 344 (398)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHh--------hCHHHHHHH
Confidence 36667889999999999999999999999999999999 799855544444333333332211 123455667
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LF 159 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~ 159 (506)
.++.+++.++..+...+...|.++++ ++...+++++... +|..+++.+ ++
T Consensus 345 ~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 345 GAIAGFFVNGGQSGLYALMALFYPTA----------IRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHH----------HHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 77889999999999999999877432 2457789888888 999998887 55
No 164
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.92 E-value=3.4e-07 Score=97.10 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhccc
Q 035916 30 FVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISG 109 (506)
Q Consensus 30 ~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~ 109 (506)
+.+.+.+.+.+.....++.+++|+++|| +|||+++.++..++.+|.++...+... .+...+.+++.+.|+|.|+
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~ 118 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGG 118 (451)
T ss_pred HHHHHHHHHHHHhhhccccccccccccc-ccccccccccccccccccccccccccc-----ccccccccccccccccccc
Confidence 3456788888899999999999999999 799999999999999999888877310 1457788999999999999
Q ss_pred ccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHHHHH----h---hhhHHHHHHHHHHHHHHH--
Q 035916 110 HMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAFLFI----K---SWKIKFGILAMFTTVSTL-- 179 (506)
Q Consensus 110 ~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~~~i----~---g~~~~F~i~~~~~~~~~~-- 179 (506)
.-+....++.|.-++ + .|.....+...+. +|.+++..+.+. . +|+..+.++++..++.++
T Consensus 119 ~~~~~~~~~~E~~~~----~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~ 188 (451)
T PF00083_consen 119 AYVVSPIYISEIAPP----K------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR 188 (451)
T ss_pred ccccccccccccccc----c------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999865422 2 2345566666777 888877766222 3 499998876655433222
Q ss_pred HHHhcCccee
Q 035916 180 VFLSGSSSYR 189 (506)
Q Consensus 180 ~f~~~~~~~~ 189 (506)
.++..+|+|.
T Consensus 189 ~~~pESP~wL 198 (451)
T PF00083_consen 189 FFLPESPRWL 198 (451)
T ss_pred ccccccccee
Confidence 3455555554
No 165
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.90 E-value=0.0001 Score=76.07 Aligned_cols=153 Identities=14% Similarity=-0.001 Sum_probs=95.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+.+|+++++|.++.+|+.+...+....-+.=++||+|||| +|.+|.+......++++..++..... ......+...
T Consensus 239 ~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~~~~l~~~~~-~~~~~~~~~~ 316 (417)
T COG2223 239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALAAALLSLFLT-GFGHGGSFVV 316 (417)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHHHHHHHcccc-ccccCcchHH
Confidence 457899999999999999999999999999999999999999 78888888888888887777776531 1110122333
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh-hhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS-WKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g-~~~~F~i 169 (506)
++...+...+-.|.=+..+..++...++++. ...-.+--..- +|.+.-|.. +.. .| ++.+|.+
T Consensus 317 ~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~-----------G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~ 385 (417)
T COG2223 317 FVAVFLALFVFAGLGNGSVFKMIPVIFPKET-----------GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFML 385 (417)
T ss_pred HHHHHHHHHHHhccCcchheeechHHHHhhh-----------hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHH
Confidence 3333333444444444444555554443311 11122211122 444444444 443 33 7778877
Q ss_pred HHHHHHHHHHHH
Q 035916 170 LAMFTTVSTLVF 181 (506)
Q Consensus 170 ~~~~~~~~~~~f 181 (506)
-....+++.+..
T Consensus 386 ~~~~~~~a~v~~ 397 (417)
T COG2223 386 LLAFYLVALVLT 397 (417)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 166
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=97.90 E-value=0.00025 Score=73.84 Aligned_cols=150 Identities=7% Similarity=-0.100 Sum_probs=97.3
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHH-HHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWG-TAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~-~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
....|+.+ .|++.++.+.+...... ...++.+++|+++|| +|++|.+..+..+..++.+......... .......
T Consensus 230 ~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 305 (390)
T TIGR02718 230 LSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAAFW--LAPGIAV 305 (390)
T ss_pred HhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCcHHH
Confidence 34567765 79999999998888764 555668999999999 7999999887776533322222111000 0011222
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
......+.+++.|...+...+...+..+++ + .+...+....... +|..+++.+ +++ .||+..|.+.
T Consensus 306 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~-------~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~ 376 (390)
T TIGR02718 306 AWSCSAFGSLITGITSVAIYTAFMRFAGDG--D-------QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSG 376 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--c-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 233333344556666677777766654331 1 2346788888888 999999999 777 7888899887
Q ss_pred HHHHHHHHH
Q 035916 171 AMFTTVSTL 179 (506)
Q Consensus 171 ~~~~~~~~~ 179 (506)
++..+++..
T Consensus 377 ~~~~l~a~~ 385 (390)
T TIGR02718 377 TVLAVLAIL 385 (390)
T ss_pred HHHHHHHHH
Confidence 776665543
No 167
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.89 E-value=0.00022 Score=75.47 Aligned_cols=153 Identities=12% Similarity=-0.038 Sum_probs=87.5
Q ss_pred hhhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcc-ccccccc
Q 035916 11 VAFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFY-DYKPECI 88 (506)
Q Consensus 11 s~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~-~~~~~~~ 88 (506)
.+|+. ..+..|+.+++|++..+++...........+..+++|+++|| +|||+.+.++..+..+....+.. ...
T Consensus 258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~---- 332 (432)
T PRK10406 258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQN---- 332 (432)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHc----
Confidence 35553 445677878889999888888877777777778888999999 79999887776654332221111 100
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH--HHHHHHHHH-HHH--hh-
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL--VPNILSIAF-LFI--KS- 162 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i--iG~~i~~~~-~~i--~g- 162 (506)
..+.......+.+...+.+...+...++.+|.++++ .|.....+-|..- +....++.+ .++ .|
T Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~----------~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~ 401 (432)
T PRK10406 333 -VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ----------VRALGVGLSYAVANALFGGSAEYVALSLKSIGM 401 (432)
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 011111111122222333333455667788888542 2346677766443 323346666 554 34
Q ss_pred hhHHHHHHHHHHHHHHH
Q 035916 163 WKIKFGILAMFTTVSTL 179 (506)
Q Consensus 163 ~~~~F~i~~~~~~~~~~ 179 (506)
|...+...++..+++.+
T Consensus 402 ~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 402 ETAFFWYVTLMAVVAFL 418 (432)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 55566655555555544
No 168
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.88 E-value=0.00019 Score=75.12 Aligned_cols=143 Identities=8% Similarity=-0.033 Sum_probs=89.3
Q ss_pred HHHhhhccChhHHHHHHHHHHHH-HHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWG-TAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~-~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
.|+.+++|++..+.+.+...... ...++.+++|+++|| +||+|.+..+.....+..+.+...+.. ..+.+.+..
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r-~g~~~~l~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~ 308 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVR-LGLYRSLMLFGVLQAVSNLGYWVLAVT----PKHLWTMAL 308 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhc----CCcHHHHHH
Confidence 46667799999999988766543 467788999999999 799999887777655543333211110 012233343
Q ss_pred HH----HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 99 AL----GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 99 ~l----~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
+. +..+++.+...+....+..+.++.+ -+..+.... +|..++..+ +++ .||+..|.+
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~ 374 (402)
T PRK11902 309 AIGIENLCGGMGTAAFVALLMALCNRSFSAT--------------QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLM 374 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 33 2445556666666666666544321 134444444 566544445 665 899999999
Q ss_pred HHHHHHHHHHHH
Q 035916 170 LAMFTTVSTLVF 181 (506)
Q Consensus 170 ~~~~~~~~~~~f 181 (506)
.+++.+++.++.
T Consensus 375 ~~~~~~~~~~~~ 386 (402)
T PRK11902 375 TVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHH
Confidence 887777766554
No 169
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.87 E-value=0.00016 Score=85.79 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=103.3
Q ss_pred hHHHHHHhhhccChhH-HHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEVWMISFV-HAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~-~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
..+..|+.+.+|++.. .++.+.........++.++.|+++|| +++++.+.++.++..++.+++.... +.+
T Consensus 253 ~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 323 (1146)
T PRK08633 253 ANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAP--------SLA 323 (1146)
T ss_pred HhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhh--------hHH
Confidence 3455677788999998 89999999988889999999999999 7999999888888877776666542 345
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFG 168 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~ 168 (506)
.+.++.++.+++.|+..+...+++.+..+++ .+.+.++...+.. +|.++++.+ ..+ .++...|.
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~----------~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~ 393 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLFIVPLNALIQFRAPEK----------ELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFY 393 (1146)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc----------chhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 5667778889999999888888887765332 2457788888777 888777666 433 34444555
Q ss_pred HHHH
Q 035916 169 ILAM 172 (506)
Q Consensus 169 i~~~ 172 (506)
+.++
T Consensus 394 ~~~~ 397 (1146)
T PRK08633 394 LIAL 397 (1146)
T ss_pred HHHH
Confidence 4433
No 170
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=97.87 E-value=0.00012 Score=74.44 Aligned_cols=124 Identities=10% Similarity=-0.080 Sum_probs=98.2
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..|+++.+|.+..+.+.+.........++.+++|++.|| .||++.+..+..+..++..++.... . +.+.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~ 306 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRY-FKRMALMTGAIFVIGLAILVVGLTP------P-NFPLFLV 306 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHhhc------h-hHHHHHH
Confidence 345555689999999999999998899999999999999 7999999888777777766655442 1 2456677
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
..++.+++.+...+...++..|..++ + ++.+.++.+.... +|..+++.+ +++
T Consensus 307 ~~~~~g~~~~~~~~~~~~~~~~~~~~---~-------~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 307 LWFAIGVGYGPINVPQGTLLQRRVPA---E-------LLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999887643 2 3457788888888 999988887 665
No 171
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.87 E-value=0.012 Score=61.09 Aligned_cols=106 Identities=13% Similarity=-0.021 Sum_probs=69.8
Q ss_pred hHHHHHHhhhccC---hhHHH----HHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc
Q 035916 16 WMMMDYLTEVWMI---SFVHA----AGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI 88 (506)
Q Consensus 16 ~~l~~yl~~~l~~---~~~~a----~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~ 88 (506)
..+-.|+++..+- +.++. +...++......+..+.-|-++|..=-||+.+-....+..+..+++...+.
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~---- 111 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP---- 111 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC----
Confidence 4567899876654 33333 333444445555667777889999644555666677777777777776631
Q ss_pred CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCC
Q 035916 89 GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFR 126 (506)
Q Consensus 89 ~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~ 126 (506)
...+....+.+.+..++..+....-+++.-|..++++
T Consensus 112 -~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~ 148 (438)
T COG2270 112 -GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN 148 (438)
T ss_pred -CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc
Confidence 1234445555667888888888999999988775544
No 172
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.86 E-value=0.00027 Score=69.32 Aligned_cols=130 Identities=7% Similarity=-0.056 Sum_probs=96.5
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
.-|..+...+++.+.++-+.+++.|+--..+.|.+|||+-||.+|-|+--.+-+.+..+|+++.+..... +..+.
T Consensus 64 ~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~-----~aFw~ 138 (459)
T KOG4686|consen 64 GALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGIS-----HAFWT 138 (459)
T ss_pred hhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHH-----HHHHH
Confidence 3456677777888888999999999999999999999999999999887777777777899887765321 35678
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
...|+.+.++|.-..-..-+.+..--|+.+ ++.-.|..+--.. +|+.+-..+ +++
T Consensus 139 M~~GRF~FGIGgESlAVaQN~yav~wFKGK----------ELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 139 MLAGRFLFGIGGESLAVAQNKYAVYWFKGK----------ELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred HHhhheeeccCchhhhhhhcceeEEEecCc----------cccchhhHHHHHHHhhceeeeeecHHH
Confidence 889999999988766655555555444332 2345677666555 887766666 665
No 173
>PRK09669 putative symporter YagG; Provisional
Probab=97.83 E-value=0.00022 Score=75.71 Aligned_cols=116 Identities=10% Similarity=-0.007 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhccccccc
Q 035916 34 AGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGS 113 (506)
Q Consensus 34 ~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~ 113 (506)
+.+.........+..++.++++|| +|||+++..+.....++.+.+.+.. ..+.+.+++...+.++|.+...+.
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIP------PSNVWLIFALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556777888999999 7999999988876665433322221 124455677778899999999999
Q ss_pred chhhhhcccccCCccc-cccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 114 IDRFIADQATNFREEE-FSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 114 ~~~~~~dq~~~~~~~~-~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
..++.+|..|.++.+. +| +....++.+.++. +|..+|+.+ +++
T Consensus 340 ~~am~ad~~d~~e~~~G~r----~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 340 QWSMFSDVVDYEEKRSGRR----LDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHHHHHhhhhhhhhhcCcC----cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999886533211 11 3456778888888 999999888 665
No 174
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.82 E-value=0.00056 Score=71.09 Aligned_cols=62 Identities=16% Similarity=0.078 Sum_probs=53.8
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccc
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYD 82 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~ 82 (506)
.|+.+++|++..+.+.+.........++.++.|++.|| +|||+.+..+..+..++.+++...
T Consensus 228 ~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 228 VLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGI-FKPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999988888888888999999999999 799999999999888888777665
No 175
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.81 E-value=0.00019 Score=73.61 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=88.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+++ .|++..+++.+...+.....++.+++|+++||+-+||+++..+..+..++.+.+.... .....
T Consensus 218 ~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 289 (355)
T TIGR00896 218 GWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-------MHGLW 289 (355)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-------hhHHH
Confidence 345567754 6999999999999999999999999999999943677788888888888876665442 11111
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
....+.++|.|...|...+...+..++ ++ ++...+...+... +|..+++.+ +++
T Consensus 290 --~~~~l~g~~~g~~~~~~~~~~~~~~~~--~~-------~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 290 --AWALVLGLGQGGAFPLALTLIGLRSRQ--AA-------QAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred --HHHHHHHHhhhhHhHHHHHHHHHhccC--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134678999999998887777754322 21 2234455555445 777777777 666
No 176
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.80 E-value=0.00016 Score=74.82 Aligned_cols=146 Identities=12% Similarity=0.088 Sum_probs=114.1
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
+.|-.+.+|+++.+-..+-..-+..+.++++++|+|+|| +|-|+++.++.+++.+-.+...... ....+.+
T Consensus 276 ~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~--------~~~~f~i 346 (438)
T COG2270 276 GVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLE--------GELDFWI 346 (438)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHcc--------ccHHHHH
Confidence 456667899999999999999999999999999999999 8999999999998877655544432 1223333
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhhHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWKIKFGILAM 172 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~~~F~i~~~ 172 (506)
.=+++++..|+..+..-++.++..++++. .++|..|-..- ..+.+||.+ +.+ .+-+.++..-.+
T Consensus 347 ~gll~g~s~G~~qA~SRSy~~~lvp~~k~----------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 347 LGLLVGTSLGGAQASSRSYLARLVPKGKE----------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhCCCccc----------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44678999999999999999988866443 36799888888 999999998 665 567777776666
Q ss_pred HHHHHHHHHHh
Q 035916 173 FTTVSTLVFLS 183 (506)
Q Consensus 173 ~~~~~~~~f~~ 183 (506)
.+.+++++++.
T Consensus 417 ll~iGl~~L~~ 427 (438)
T COG2270 417 LLLIGLLLLLR 427 (438)
T ss_pred HHHhhHhhEEe
Confidence 67677665543
No 177
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.80 E-value=0.00041 Score=72.85 Aligned_cols=123 Identities=10% Similarity=-0.062 Sum_probs=83.2
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+..|+++ .|++..+++.+.........++.+++|+++|| +|||+.+..+..+..++.+.+..... .... .
T Consensus 254 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~ 323 (426)
T PRK12307 254 LPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADR-IGLKKTFSIGLLMSFLFIFPLFRIPQ------DNYL--L 323 (426)
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHcc------ccHH--H
Confidence 4456654 68999999988888888889999999999999 79999999888877666544432210 1111 1
Q ss_pred HHHHHHH--hhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 98 TALGLIA--FGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 98 ~~l~l~~--~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.+..+.+ .+..+..+..+++..|.++++ ++.+.....+... +|..+++.+ +++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----------~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 324 LGACLFGLMATNVGVGGLVPKFLYDYFPLE----------VRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHHHHHHhcccHhHHHHHHHHHhCcHH----------HHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 2222222 233333455666777666432 2456678888888 999999988 777
No 178
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.79 E-value=0.00016 Score=76.09 Aligned_cols=140 Identities=9% Similarity=-0.075 Sum_probs=84.9
Q ss_pred hHHHHHHhh-hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHH-HHHHHHHHHhhhhhhcccccccccCCchH
Q 035916 16 WMMMDYLTE-VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWM-ILVSSFAYTAVIKFLFYDYKPECIGEGQK 93 (506)
Q Consensus 16 ~~l~~yl~~-~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~t-i~~~~~~~~iG~~~l~~~~~~~~~~~~~~ 93 (506)
..+..|+++ ..|++..+++...........++.+++|+++|| +|||+. +.....+..++.++.... .+.
T Consensus 263 ~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr-~~~r~~~~~~~~~~~~~~~~~~~~~--------~~~ 333 (412)
T TIGR02332 263 IWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR-LKERKHHTALPYLFAAAGWLLASAT--------DHN 333 (412)
T ss_pred HHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc-cCccHHHHHHHHHHHHHHHHHHHhc--------CCH
Confidence 445567765 347788888988888888899999999999999 686664 444444444444332211 111
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---h-hhhHHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---K-SWKIKF 167 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~-g~~~~F 167 (506)
.....++.+.++|....-+.......+.+ |+| ++...+.+.+... +|..+++.+ +.+ . +|+.+|
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~------~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~ 403 (412)
T TIGR02332 334 LIQLLGIIMASMGSFSAMAIFWTTPDQSI----SLQ------ARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGL 403 (412)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHhhccccc----chH------HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhH
Confidence 22222233333333222222212222222 221 3567899999999 999999988 776 3 599998
Q ss_pred HHHHHHH
Q 035916 168 GILAMFT 174 (506)
Q Consensus 168 ~i~~~~~ 174 (506)
.+.++..
T Consensus 404 ~~~~~~~ 410 (412)
T TIGR02332 404 WFVAALL 410 (412)
T ss_pred HHHHHHH
Confidence 8766543
No 179
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=97.78 E-value=0.00013 Score=73.80 Aligned_cols=124 Identities=19% Similarity=0.113 Sum_probs=98.1
Q ss_pred hHHHHHHhhhccCh-hHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEVWMIS-FVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~-~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
..+..|+.+++|++ ..+++.+.........++.++.|+++|| +|+++.+.+......++.+.+.+.... .+..
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 300 (352)
T PF07690_consen 227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR-FGRRRRLLIAILLLILGALGLLLLPFS-----SSPV 300 (352)
T ss_dssp HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCSHHH-----CHHH
T ss_pred cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHHHh-----hhHH
Confidence 34556778899999 7899999999999999999999999999 899888888888777777666655321 1344
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSI 155 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~ 155 (506)
.......+.+++.|...|...++..|..+++ ++.+..+.+.... +|..++|
T Consensus 301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 301 WLIIALFLIGFGFGIVFPILFSLIQELVPPE----------YRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH----------HHHHHHHHHHHHHHHHHHHCC
Confidence 5566788899999999999999999877432 3457788888888 9988876
No 180
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.78 E-value=0.00044 Score=75.16 Aligned_cols=148 Identities=15% Similarity=0.055 Sum_probs=115.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..+..+.+|.+...-+.+.+++..+..++.++.+.+.++ +++.+.+..+.+.+.++.+.++++. +.+.
T Consensus 239 aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~--------~~~~ 309 (524)
T PF05977_consen 239 ALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSP--------SFWL 309 (524)
T ss_pred HhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcch--------HHHH
Confidence 334567778899999999999999999999999999999988 8999999999998888888877763 4556
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGIL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~ 170 (506)
....+++.|.+.........+..- ...|++ .+.+.++.+.... .|..+|..+ +.+ .|-+..+.++
T Consensus 310 ~~~~l~l~G~~~~~~~~~~~t~~Q----~~~P~~------~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a 379 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANSSLNTLVQ----LSVPDW------VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIA 379 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhCCHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 666777777777766655555543 233433 4568899988888 777888888 777 7888888888
Q ss_pred HHHHHHHHHHHH
Q 035916 171 AMFTTVSTLVFL 182 (506)
Q Consensus 171 ~~~~~~~~~~f~ 182 (506)
++.++++.++..
T Consensus 380 ~~~lll~~~~~~ 391 (524)
T PF05977_consen 380 GAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHH
Confidence 888777766554
No 181
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.78 E-value=0.00014 Score=77.16 Aligned_cols=150 Identities=15% Similarity=0.109 Sum_probs=86.6
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHH---HhhhhhhcccccccccCCch
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAY---TAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~---~iG~~~l~~~~~~~~~~~~~ 92 (506)
..+..|+++..|++..+++.+...+.....++.+++|+++|| +|+++....+.... .++...+..... .+
T Consensus 272 ~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 344 (438)
T TIGR00712 272 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFKGNRGATGVFFMTLVTIAVIVYWMNPA------GN 344 (438)
T ss_pred HhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcccHHHHHHHHHHHHHHHHHHhcCC------Cc
Confidence 334578888889999999999999998899999999999999 55433222233222 122222222110 11
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HH-HHHHHHH-HHH---hhhhHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VP-NILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG-~~i~~~~-~~i---~g~~~~ 166 (506)
.......+++.+.+..+.-+.......|.+++ + ++.....+++... +| .++++.+ +++ .||..+
T Consensus 345 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~-------~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~ 414 (438)
T TIGR00712 345 PLVDMICMIVIGFLIYGPVMLIGLHALELAPK---K-------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 414 (438)
T ss_pred hHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh---h-------heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHH
Confidence 22223333333333222112222344554432 1 2345677776666 65 5678888 777 689999
Q ss_pred HHHHHHHHHHHHHHHH
Q 035916 167 FGILAMFTTVSTLVFL 182 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~ 182 (506)
|.+.++..+++.+..+
T Consensus 415 ~~~~~~~~~~~~~~~~ 430 (438)
T TIGR00712 415 FMVMIGGSILAVILLI 430 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8877766666655443
No 182
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.78 E-value=0.00045 Score=71.14 Aligned_cols=122 Identities=11% Similarity=-0.057 Sum_probs=76.5
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.|+.++.|++..+++.+.........++.+++|+++|| +|||+++.++..+..+..+.+...... ....+...++
T Consensus 219 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 293 (377)
T PRK11102 219 FVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR-VGALNMLRFGLWIQFIMGIWLVVSALL----DLGFWALVVG 293 (377)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHH
Confidence 35567789999999999999999999999999999999 899999998887654432222221100 0123334445
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHH-HH-HHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGL-SL-VPNILSIAF 157 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~-~i-iG~~i~~~~ 157 (506)
..+...+.+...++......|.. |++ +.+..+.... .. +|+.++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 294 VAAFVGCVSMISSNAMAVILDEF----PHM-------AGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHhhHHHHHHHhccc----ccc-------chHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666555555543 221 2244444322 23 666666665
No 183
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=97.77 E-value=0.00026 Score=73.86 Aligned_cols=142 Identities=10% Similarity=0.053 Sum_probs=92.7
Q ss_pred HHHHhhhc---cChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 19 MDYLTEVW---MISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 19 ~~yl~~~l---~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..|+++.+ +.+....+.+.+.......++.+..|++.|| +|||+.+.++..+..++..+..... +.+.
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~--------~~~~ 309 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFAT--------TALE 309 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcC--------ChHH
Confidence 35665554 4455556666666666667777899999999 8999999999998888877655542 2344
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHH-HHHHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSF-WGLSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~-~y~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
++....+.+++.+........+..++.+++ .+...++. +.... +|..+++.+ +++ .||+..|.+
T Consensus 310 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~----------~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~ 379 (396)
T TIGR00882 310 VVILKMLHAFEVPFLLVGCFKYITSQFDVR----------LSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLV 379 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----------eEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 555566666665444333333344333211 11223433 34567 999999988 888 789999998
Q ss_pred HHHHHHHHHH
Q 035916 170 LAMFTTVSTL 179 (506)
Q Consensus 170 ~~~~~~~~~~ 179 (506)
.++..++..+
T Consensus 380 ~~~~~~i~~~ 389 (396)
T TIGR00882 380 LGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHH
Confidence 7777665554
No 184
>PRK10054 putative transporter; Provisional
Probab=97.77 E-value=0.00033 Score=73.39 Aligned_cols=150 Identities=13% Similarity=0.012 Sum_probs=102.7
Q ss_pred hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHH
Q 035916 25 VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIA 104 (506)
Q Consensus 25 ~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~ 104 (506)
+.+.+....+.+...............|.+.|| .|+|+.+..+..+..++...+.... .+.+.+.++..+.+
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 309 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNA-ANIRPLMTAGTLCFVIGLVGFIFSG-------NSLLLWGMSAAVFT 309 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHcc-------hHHHHHHHHHHHHH
Confidence 445666677777777766666666788899999 6999999999888888887665432 13445566777889
Q ss_pred hhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHH
Q 035916 105 FGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 105 ~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~ 179 (506)
+|.+...|+..+.+.+.-+++ .+..+++.. ... +|..+|+.+ +++ .|+...|.+-++...++.+
T Consensus 310 ~g~~~~~p~~~~~~~~~~p~~----------~~~~~~~~~-~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 310 VGEIIYAPGEYMLIDHIAPPG----------MKASYFSAQ-SLGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred HHHHHHHhhHHHHHHHhCCcc----------cceehHhHH-HHHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 998888888887877655331 223455543 345 889999988 777 7777788776666666555
Q ss_pred HHHhcCcceeecCCCCCh
Q 035916 180 VFLSGSSSYRRRKPQGSS 197 (506)
Q Consensus 180 ~f~~~~~~~~~~~p~g~~ 197 (506)
....+. +.+|-|+|
T Consensus 379 ~~~~~~----~~~~~~~~ 392 (395)
T PRK10054 379 LMLKGM----RARPWGQP 392 (395)
T ss_pred HHHhcc----ccCcccCC
Confidence 444332 23555554
No 185
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.77 E-value=0.00064 Score=71.14 Aligned_cols=138 Identities=7% Similarity=-0.083 Sum_probs=94.0
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.++.+++|++..+++.+...+.....++.++.|++.|| .+ ++.+..+..+..+..+++.... .+.+.+...
T Consensus 241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r-~~-~~~l~~~~~~~~~~~~~l~~~~-------~~~~~~~~~ 311 (394)
T PRK10213 241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR-SV-KLALAGAPLVLAVSALVLTLWG-------SDKIVATGV 311 (394)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-hhHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Confidence 33346789999999999999998899999999999999 44 4444444444333333332221 134556667
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
.++.++|.+...+...+++.+..+++ .++..+.++... +|..+|+.+ +++ .|++..|..+++..
T Consensus 312 ~~l~G~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~ 380 (394)
T PRK10213 312 AIIWGLTFALVPVGWSTWITRSLADQ-----------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLM 380 (394)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHCccc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHH
Confidence 78889999999998888888665322 123455666666 888888888 777 67777787776554
Q ss_pred HHH
Q 035916 175 TVS 177 (506)
Q Consensus 175 ~~~ 177 (506)
.+.
T Consensus 381 ~~~ 383 (394)
T PRK10213 381 LLT 383 (394)
T ss_pred HHH
Confidence 433
No 186
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.77 E-value=0.00052 Score=71.30 Aligned_cols=140 Identities=11% Similarity=-0.037 Sum_probs=97.7
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|++ +.|++..+.+.+.+.......+..++.|++.|| +|+++.+..+.....++.+++.... +.+.
T Consensus 226 ~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~ 295 (382)
T PRK11128 226 GFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTT--------ALPW 295 (382)
T ss_pred HHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhh--------hHHH
Confidence 33456774 589999999988887777777788899999999 7999999999998888877665442 3455
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHH-HHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWG-LSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y-~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
+++...+.+++.+...+....+..++ +++ ++.+..+.+. ... +|..+++.+ +++ .|+. .|.+
T Consensus 296 ~~~~~~l~g~~~~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~ 363 (382)
T PRK11128 296 LIVIQILHCGTFTVCHLAAMRYIAAR----PGS-------EVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWV 363 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC----CHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHH
Confidence 66777788888888777777766653 222 1234566554 445 788888888 777 4553 4444
Q ss_pred HHHHHHHH
Q 035916 170 LAMFTTVS 177 (506)
Q Consensus 170 ~~~~~~~~ 177 (506)
.++..+++
T Consensus 364 ~~~~~~~~ 371 (382)
T PRK11128 364 MALVALPA 371 (382)
T ss_pred HHHHHHHH
Confidence 44433333
No 187
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.71 E-value=0.0035 Score=66.76 Aligned_cols=130 Identities=14% Similarity=0.111 Sum_probs=85.5
Q ss_pred hhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHH
Q 035916 324 LLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLF 403 (506)
Q Consensus 324 l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~ 403 (506)
..+.+-.--+.+-++..+++ +|.+ |.+-|..|+.+...=++....+ -|+|
T Consensus 411 ~~a~~~~gEI~~~ffs~klI-------~kiG-Hv~v~~lgLa~~~~Rf~~~S~L----------------------~n~W 460 (618)
T KOG3762|consen 411 VSALCHAGEILFYFFSFKLI-------EKIG-HVNVMYLGLACNVGRFLYYSYL----------------------QNPW 460 (618)
T ss_pred hhhhhccchHHHHHHHHHHH-------HHhc-ccceeeehhhHHHHHHHHHHHh----------------------cCch
Confidence 33444444555555555555 5553 4444778877766555444333 2456
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHH-----hHHHHHHHhhhhhhhcccccccCCcCCCCCCC
Q 035916 404 WLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVAT-----MGVGIIGSTLSVYYAGIISERIGKHNWFQDTL 478 (506)
Q Consensus 404 wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~-----~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~l 478 (506)
-.+|.-+++|+.-.++..+..+++...+|++++..++|+.-.. -++|+++|+.++..+..
T Consensus 461 ~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~--------------- 525 (618)
T KOG3762|consen 461 MVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA--------------- 525 (618)
T ss_pred heeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh---------------
Confidence 6778889999999999999999999999999999999887655 35666666655433221
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhh
Q 035916 479 NLSRLDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 479 n~~~l~~~~~lla~l~~v~~~~f~~ 503 (506)
--+|+..++-+++.++.|..
T Consensus 526 -----~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 526 -----RTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH
Confidence 22456666666666666554
No 188
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=97.71 E-value=0.0002 Score=73.03 Aligned_cols=133 Identities=15% Similarity=0.055 Sum_probs=84.1
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHH--HHHHHhhhhhhcccccccccCCchHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVS--SFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~--~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+..|+.+.+|++..+++.+...+.....++.+++|+++||..+|++..... .....++...+.... ..+...
T Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 312 (379)
T TIGR00881 239 SPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP------AANPLM 312 (379)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc------chhHHH
Confidence 456778889999999999999999999999999999999854554433222 122222222222211 012233
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~ 166 (506)
..+...+.+...++..+...++..|..++ + ++...++++.... +|..+++.+ +++ .||+..
T Consensus 313 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 313 DLICLFALGFLVYGPQMLIGVIASELAPK----K------AAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhcCc----c------hhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 33444445554445445555666665532 1 3457788888888 999999888 777 666554
No 189
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=97.70 E-value=0.00055 Score=73.04 Aligned_cols=102 Identities=14% Similarity=0.057 Sum_probs=60.7
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
+-.|+++.+ +...+............+..++||++||| +|++|++.++.+...++...+...- |.. +..+.+.+.
T Consensus 275 lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADR-iG~~~vl~~~~i~~~i~~~~~~l~l-p~~-~~~~~~~~~ 349 (462)
T PRK15034 275 FAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDK-FGGVRVTLINFIFMAIFSALLFLTL-PGT-GSGNFIAFY 349 (462)
T ss_pred HHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHh-ccc-cccHHHHHH
Confidence 445665544 33333333333455677778899999999 8999999998887766653322211 210 012455555
Q ss_pred HHHHHHHhhcccccccchhhhhccccc
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATN 124 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~ 124 (506)
.+.+.+.+..|.-+..+..++.+.+++
T Consensus 350 ~~~~~l~~~~G~gngsvfk~ip~~f~~ 376 (462)
T PRK15034 350 AVFMGLFLTAGLGSGSTFQMIAVIFRQ 376 (462)
T ss_pred HHHHHHHHHhcccchHHHHhhHHHHhh
Confidence 555555566666666666666666653
No 190
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.69 E-value=0.00076 Score=70.57 Aligned_cols=142 Identities=10% Similarity=-0.006 Sum_probs=97.7
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..|+.+.+|.+..+++.+.........+++++.+.+.|| .++++.+..+..+ .++..++... .+.+...+
T Consensus 229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~-~~~~~~~~~g~~~-~~~~~~~~~~--------~~~~~~~~ 298 (393)
T PRK11195 229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL-ETVLRVLPAGILM-GLVVLLMALQ--------HSLLPAYP 298 (393)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccchHHHHHHH-HHHHHHHHHH--------hHHHHHHH
Confidence 356778899999999999999999999999999999998 6888888777533 3333333322 12344556
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGILAMFT 174 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i~~~~~ 174 (506)
.+.+.+++.|.+.+...+...+. .|+|. .+.+.++...... +|..++..+ +.+ +|=+..+.+..++.
T Consensus 299 ~~~~~G~~~g~~~~~~~~~~q~~----~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (393)
T PRK11195 299 LLILIGALGGFFVVPMNALLQHR----GHVLV-----GAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGL 369 (393)
T ss_pred HHHHHHHhhhhhhhhHHHHHHhh----Ccccc-----cchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 66788899999888888876542 22221 2456777888888 888888887 555 55555555544444
Q ss_pred HHHHH
Q 035916 175 TVSTL 179 (506)
Q Consensus 175 ~~~~~ 179 (506)
+++..
T Consensus 370 ~~~~~ 374 (393)
T PRK11195 370 LVALA 374 (393)
T ss_pred HHHHH
Confidence 44433
No 191
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.68 E-value=0.00067 Score=72.39 Aligned_cols=151 Identities=17% Similarity=0.111 Sum_probs=89.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHH--------HHHHHHHHHhhhhhhcccccccc
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWM--------ILVSSFAYTAVIKFLFYDYKPEC 87 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~t--------i~~~~~~~~iG~~~l~~~~~~~~ 87 (506)
..+..|+.+.+|++..+++...........++.+++|+++|| +++|+. +..+......+..++......
T Consensus 282 ~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 358 (465)
T TIGR00894 282 TYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADF-LKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS-- 358 (465)
T ss_pred HHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 345578888899999999999988888899999999999998 443321 111211111111111111000
Q ss_pred cCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-----
Q 035916 88 IGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----- 160 (506)
Q Consensus 88 ~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----- 160 (506)
.+.......+.+.+.+.++..++......| ..|+ ............. +|.++++.+ +++
T Consensus 359 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~-------~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~ 424 (465)
T TIGR00894 359 ---AAFYLTIIILTLANAVSSGPLAGVLINSLD----LAPR-------FLGFIKGITGLPGFIGGLIASTLAGNILSQDS 424 (465)
T ss_pred ---CchHHHHHHHHHHHHHhhhhhhhhhhchhh----cChh-------HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC
Confidence 112223333444444445444444433332 2232 2345566666666 888888877 766
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHh
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLS 183 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~ 183 (506)
.+|..+|.+.++..+++.+.+..
T Consensus 425 ~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 425 KNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred chHHHHHHHHHHHHHHHHHHHeee
Confidence 23889999988888887765543
No 192
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.68 E-value=0.00049 Score=74.39 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=63.8
Q ss_pred HHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhccc
Q 035916 43 TAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQA 122 (506)
Q Consensus 43 ~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~ 122 (506)
...++.+++++++|| +|||++++.+..+..++.+++.+.... ......+........++..+.-+....+.+|.+
T Consensus 347 ~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ 421 (502)
T TIGR00887 347 GTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLFFVLGFAYNH----LSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421 (502)
T ss_pred HHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence 444567888999999 799999999888877776665543210 001111111111222223333455556667766
Q ss_pred ccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 123 TNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+.+ .|.....+.+... +|+++++.+ +++
T Consensus 422 p~~----------~R~~~~g~~~~~~~~~~~~~~~~~~~l 451 (502)
T TIGR00887 422 PTR----------YRSTAHGISAASGKAGAIIGQFGFLYL 451 (502)
T ss_pred chh----------HHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence 332 3457788888888 999999988 777
No 193
>PRK10429 melibiose:sodium symporter; Provisional
Probab=97.67 E-value=0.00047 Score=73.99 Aligned_cols=124 Identities=12% Similarity=-0.020 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcc
Q 035916 29 SFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGIS 108 (506)
Q Consensus 29 ~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g 108 (506)
+....+.+.........++.++.++++|| +|||+++.++..+..++.+.+...... .....+.+.+...+.++|.+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~g~~~~ 339 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLA---APHNALLIVIAGILLNIGTA 339 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHH
Confidence 34444555555556667777888999999 799999998888777666554332110 01234555666677889999
Q ss_pred cccccchhhhhcccccCCcc-ccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 109 GHMGSIDRFIADQATNFREE-EFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 109 ~~k~~~~~~~~dq~~~~~~~-~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
...+...++.+|..|.++-+ .+| +...+|+.+-++. +|..+++.+ +++
T Consensus 340 ~~~~~~~am~ad~id~~e~~tG~R----~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 340 LFWVLQVIMVADTVDYGEYKLGIR----CESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHHHHHHhhhhhhhhHhcCcc----chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998654211 112 3455788888888 999999888 666
No 194
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.65 E-value=0.0058 Score=61.92 Aligned_cols=75 Identities=11% Similarity=-0.014 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHHh-------
Q 035916 91 GQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFIK------- 161 (506)
Q Consensus 91 ~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i~------- 161 (506)
.+.+.+.+++.+++.|.+...+..+++++|.-++++. .+..|+.-.+. +|++++|++ +.+.
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~----------~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~ 77 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETA----------ASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL 77 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchH----------HHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch
Confidence 3567889999999999999999999999987654332 24478888899 999999999 6541
Q ss_pred ------------hhhHHHHHHHHHHH
Q 035916 162 ------------SWKIKFGILAMFTT 175 (506)
Q Consensus 162 ------------g~~~~F~i~~~~~~ 175 (506)
+|+..|.+-++...
T Consensus 78 ~~~~~~~~~~~~~~~~~yl~ia~~~~ 103 (310)
T TIGR01272 78 SMQVATANAEAAKVHTPYLLLAGALA 103 (310)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 57888885444433
No 195
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.63 E-value=0.025 Score=61.01 Aligned_cols=137 Identities=15% Similarity=0.046 Sum_probs=102.2
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
+++++...+-+.+.++|...-.++-+.+|++.|| +.-.+.+....+...+=. ++.... ++.+.+.+-+++.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~-~~~~~~-------~s~~~~ialr~ll 144 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFG-FLTAAV-------HSFPGLIALRFLL 144 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHH-HHHHHH-------hhhHHHHHHHHHH
Confidence 4577888899999999999999999999999999 685554444333332211 111111 3567788889999
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HH--------H-hhhhHHHHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LF--------I-KSWKIKFGILAM 172 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~--------i-~g~~~~F~i~~~ 172 (506)
|+-.++.-|+.....+.-|++++ +..-+.+||-+. +|..+|.++ .. . .||++.|.+.++
T Consensus 145 Gl~es~~wP~~~~~lg~wy~~~e----------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~ 214 (495)
T KOG2533|consen 145 GLFESGGWPGVVAILGNWYGKSE----------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGV 214 (495)
T ss_pred HHHhcccchHHHHHHHhhcChhh----------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHH
Confidence 99999999999999999995533 234588999888 888888887 33 1 899999999987
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
.+++..+
T Consensus 215 i~~~~gi 221 (495)
T KOG2533|consen 215 ITLVLGI 221 (495)
T ss_pred HHHHHHh
Confidence 7655443
No 196
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=97.60 E-value=0.00067 Score=71.13 Aligned_cols=143 Identities=10% Similarity=-0.009 Sum_probs=92.7
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
..|+++..+ ++.+.+.+...............+.+.|++++.++.+..+..+..++..++.... +......
T Consensus 232 p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~ 302 (400)
T PRK11646 232 PIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS--------NLQQLFT 302 (400)
T ss_pred hhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh--------hHHHHHH
Confidence 355655444 6677777766665544444444455566557777777888888888876665442 2344455
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hh-----hhHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KS-----WKIKFGI 169 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g-----~~~~F~i 169 (506)
...+.++|.+...|...+...|..+++ ++.+.++.+..+. +|..+|+.+ +++ .+ ....|.+
T Consensus 303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~----------~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~ 372 (400)
T PRK11646 303 LICLFYIGSIIAEPARETLSASLADAR----------ARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMM 372 (400)
T ss_pred HHHHHHHHHHHHHccHHHHHHhcCCcc----------cchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHH
Confidence 566778888888999999988777442 2446778877888 999999998 777 22 2345555
Q ss_pred HHHHHHHHHHH
Q 035916 170 LAMFTTVSTLV 180 (506)
Q Consensus 170 ~~~~~~~~~~~ 180 (506)
..+..+++.++
T Consensus 373 ~~~~~~~~~~~ 383 (400)
T PRK11646 373 LGIIGLITLLA 383 (400)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 197
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.57 E-value=0.00043 Score=70.86 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=86.8
Q ss_pred hhhhch-hHHHHHHhhhccChhHHHHHHHHHHH-HHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccc-ccc
Q 035916 10 FVAFVF-WMMMDYLTEVWMISFVHAAGIVNIFW-GTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDY-KPE 86 (506)
Q Consensus 10 fs~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~-~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~-~~~ 86 (506)
+++++. +.+..|+++ +|++.++.+.+..... ....++.+++|+++|| +|||+.+..+.++..++..+....+ ...
T Consensus 223 ~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (356)
T TIGR00901 223 LGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQP-LNILYALLLFGIVQALTNAGFVWLASNGH 300 (356)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444553 556677776 8999999998888776 3567888999999999 7999999999888877665544321 000
Q ss_pred c--cCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHH
Q 035916 87 C--IGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWG 145 (506)
Q Consensus 87 ~--~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y 145 (506)
. .+..+.+.+.....+.+++.|...+...++..+..+++. +.+.++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----------~g~~~g~~~ 351 (356)
T TIGR00901 301 HDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF----------GATQMALLS 351 (356)
T ss_pred ccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc----------cHHHHHHHH
Confidence 0 000133455666677899999999999999998775432 346666654
No 198
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.52 E-value=0.00081 Score=80.09 Aligned_cols=146 Identities=8% Similarity=-0.116 Sum_probs=99.5
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccc-c--cccc----
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDY-K--PECI---- 88 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~-~--~~~~---- 88 (506)
+.+..|+++.+|.+...++.+.+.+..+..++.++.|+++|+ .++++.+..+.++..++.+.+.... . +...
T Consensus 246 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 324 (1140)
T PRK06814 246 SQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKS 324 (1140)
T ss_pred HHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccccccccccccc
Confidence 456678888999999999999999999999999999999998 4655666555555544443333210 0 0000
Q ss_pred -----CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-
Q 035916 89 -----GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI- 160 (506)
Q Consensus 89 -----~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i- 160 (506)
...+.+.+.++.++++++.|...+...+++.+..+++. +.+.++.+.... +|..+++.+ +.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~----------~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 325 ILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH----------RARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred hhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc----------ceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 00234556778888899999999989998887664422 346677777777 888777777 555
Q ss_pred ---hhhhHHHHHHHH
Q 035916 161 ---KSWKIKFGILAM 172 (506)
Q Consensus 161 ---~g~~~~F~i~~~ 172 (506)
.++...|.+.++
T Consensus 395 ~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 395 ALGFSIPWIILFIAL 409 (1140)
T ss_pred HhccCHHHHHHHHHH
Confidence 455555554443
No 199
>PRK11043 putative transporter; Provisional
Probab=97.51 E-value=0.0029 Score=66.00 Aligned_cols=125 Identities=6% Similarity=-0.172 Sum_probs=80.6
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.|+ ++.|++..+++...........++.++++++.|| +|+++++..+.....++.+.+.+.... ..........+
T Consensus 228 ~~~-~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 302 (401)
T PRK11043 228 FIL-EQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQK-WGGEQLLPWLLVLFAVSVIAIWLASLL---SHPSLVPLLIP 302 (401)
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcHHHHHHH
Confidence 444 4579999999988777777778888899999999 799998766655555544333221110 00123444556
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
..+.+++.|..-|...+...|+.++ ++.+..+++.... .++..++.+ +.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~g~~~g~~~~~~~~~~~~~~~~~g~l 354 (401)
T PRK11043 303 FCVMAAANGAIYPIVVAQALRPFPQ-----------ATGKAAALQNTLQLGLCFLASLLVSAL 354 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCcc-----------cChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6778888998888888777766532 1235566665554 555555555 554
No 200
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.00068 Score=66.62 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=100.7
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHH-HHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVS-SFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~-~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
+|+++++|+|.+.|+.+.+..-+.+-..+++-|.+.|+ .||.-..+.+ ++....||..++++- .--++
T Consensus 289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~Ft~----------lsPy~ 357 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFFTF----------LSPYT 357 (459)
T ss_pred HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHhhh----------ccHHH
Confidence 57889999999999999999999999999999999999 6998766554 455777888888762 22366
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH------hhhhHHHHHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI------KSWKIKFGIL 170 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i------~g~~~~F~i~ 170 (506)
++.+.++.....-...-+.++-..+|+ ++..+|..-|-.. +|-.+.+++ +.+ +.|--+|.+.
T Consensus 358 ~m~~lGLsysllAcslWP~va~~vpE~----------qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~ 427 (459)
T KOG4686|consen 358 SMTFLGLSYSLLACSLWPCVASLVPEE----------QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLI 427 (459)
T ss_pred HHHHHhhhHHHHHHHHhhhhhhhCCHH----------HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHH
Confidence 777777776666555677777666443 4567788888666 999999988 887 3444456554
Q ss_pred HHHHH
Q 035916 171 AMFTT 175 (506)
Q Consensus 171 ~~~~~ 175 (506)
...|.
T Consensus 428 ~~~~a 432 (459)
T KOG4686|consen 428 IGLMA 432 (459)
T ss_pred HHHHH
Confidence 44443
No 201
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00065 Score=70.92 Aligned_cols=137 Identities=14% Similarity=0.072 Sum_probs=99.9
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccccc--CCchHHHHHHHHHHHHh
Q 035916 28 ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECI--GEGQKILLYTALGLIAF 105 (506)
Q Consensus 28 ~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~--~~~~~~~~~~~l~l~~~ 105 (506)
++....+.+..+-.....++.++-||++|+ +|||+..-...+++.++.++..++ .+. +......+..-+.++++
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s---~~~~~~~~~m~~L~~~R~~LGi 156 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLS---VGTTSPLGVMMTLCFFRFLLGI 156 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccC---CCCCCCcchhhHHHHHHHHhhc
Confidence 777788888888888888999999999999 899999999999999988744433 222 12345667778999999
Q ss_pred hcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--------------hhhhHHHHH
Q 035916 106 GISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--------------KSWKIKFGI 169 (506)
Q Consensus 106 G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--------------~g~~~~F~i 169 (506)
|.|+=-|+..+...+.-.+. +| -......|...-+.+ .|+.++.++ ... .=||+.|++
T Consensus 157 GIGGDYPlSAtI~SE~an~~----~R--Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~gl 230 (538)
T KOG0252|consen 157 GIGGDYPLSATIMSESANKK----TR--GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGL 230 (538)
T ss_pred cccCCCcchHHHhhhhhhhc----cc--cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHH
Confidence 99999998887766432221 11 013455666677788 888888777 332 339999988
Q ss_pred HHHHH
Q 035916 170 LAMFT 174 (506)
Q Consensus 170 ~~~~~ 174 (506)
.++-.
T Consensus 231 g~vpa 235 (538)
T KOG0252|consen 231 GAVPA 235 (538)
T ss_pred HHHHH
Confidence 66544
No 202
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.49 E-value=0.0065 Score=64.95 Aligned_cols=311 Identities=16% Similarity=0.105 Sum_probs=171.3
Q ss_pred HHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcc
Q 035916 42 GTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQ 121 (506)
Q Consensus 42 ~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq 121 (506)
....+..++-|.++|| +|||..+.+......++-+.+.+.. ++. ++ +.=..-|.+.+-....++++|.
T Consensus 73 ~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~~---------~~~-~~-~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 73 LLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQG---------YWF-FL-LLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred HHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHHH---------HHH-hh-hcccccchhhhhhhhhhheeec
Confidence 4567788888999999 6999999999988888776666541 222 21 1112222333445555666664
Q ss_pred cccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCC
Q 035916 122 ATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGS 196 (506)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~ 196 (506)
-++ ++ |...+..-.-++ .|..+++.. +++ .|+...|.++++..+++.+-....-|.=.+++ + +
T Consensus 141 s~~---~~-------R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~-~-~ 208 (463)
T KOG2816|consen 141 SSE---EE-------RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK-E-R 208 (463)
T ss_pred cch---hH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc-c-c
Confidence 432 22 345577777777 788888888 776 88889999998888777763333222111111 0 0
Q ss_pred hhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhhhcCcccccccccCcccccccchhhhhh
Q 035916 197 SLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEVEETK 276 (506)
Q Consensus 197 ~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k 276 (506)
+. ...++. .++ +..++-.. .+++ .....++.|
T Consensus 209 ~~--------~~~~~~---~~~--------------------~~~~~~~~---------------~~~~--~~~~~~~~r 240 (463)
T KOG2816|consen 209 SD--------ATLREL---TPG--------------------SLDSSHVA---------------DAFQ--SLTKVGPDR 240 (463)
T ss_pred cc--------cccccc---CCC--------------------cccchhhh---------------hhhh--hhcccCCCc
Confidence 00 000000 000 00000000 0000 001122233
Q ss_pred hhhhhhhHHHHhHHHHHhhcccc-hhHHHHHHHhcCCCCCCce-eChh----hhhhhhHHHHhHhhhhhhhhhhcccccc
Q 035916 277 CLVHLIPICFTFIIPGVVSSIGN-TFLLEQAEVINGKDGGNFS-FGPL----LLLLFYYISKGRFTAFYEGFVGHLTSVG 350 (506)
Q Consensus 277 ~l~~ll~l~~~~~~f~~~~~Q~~-t~~~~q~~~~d~~~g~~~~-ip~~----~l~~~n~i~iivl~Pl~~~~~~pl~~~~ 350 (506)
..+.++.+ .....+....+.. ..+. ..+.+++ |. ...+ +.+....+..+++.|++.+.+.
T Consensus 241 ~~l~l~l~--~~~~~~~~~~~~~~~~~~----yl~~~f~--w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~------ 306 (463)
T KOG2816|consen 241 LLLLLLLV--AFLSSLPEAGGASDVLLL----YLKAKFG--WNKKEFSDLLSLVSILGIISQLLLLPLLSSILG------ 306 (463)
T ss_pred cchHHHHH--HHHHHHHHhcCceeEEEE----EEeeecC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 33322222 1122222222111 1100 1233333 21 1111 2334455555556666555541
Q ss_pred ccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhc
Q 035916 351 WNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQ 430 (506)
Q Consensus 351 ~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~ 430 (506)
.|. .+.+|+..-.+...+.++.+.. |+.-........-.+..|..-.++.++
T Consensus 307 ~~~-----~i~lGl~~~~~~~~~~af~~~~-----------------------w~~~~~~v~~~~~~~~~pa~~s~~s~~ 358 (463)
T KOG2816|consen 307 EKR-----LISLGLLSEFLQLLLFAFATET-----------------------WMMFAAGVVVALAGIVFPAIRAFASIL 358 (463)
T ss_pred hhh-----HhhHHHHHHHHHHHHHHHhccc-----------------------hhhhHHHHHHHhhcchhHHHHhHHHhh
Confidence 111 2778888888877777766421 333334455555667889999999999
Q ss_pred cChhhHHHHHHHHHHHhHHHHHHHhhhhhhhccccc
Q 035916 431 FPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISE 466 (506)
Q Consensus 431 aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~ 466 (506)
.+++-+|..+++.....++.+.+++.+.+.+...|.
T Consensus 359 v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~ 394 (463)
T KOG2816|consen 359 VSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTL 394 (463)
T ss_pred cccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999888777663
No 203
>TIGR00898 2A0119 cation transport protein.
Probab=97.42 E-value=0.0019 Score=69.63 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=82.5
Q ss_pred HHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhc
Q 035916 41 WGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120 (506)
Q Consensus 41 ~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~d 120 (506)
......+.+++++++|| +|||+.+.++.++..++.+++..... ...........+..++.++.-+...++.+|
T Consensus 365 ~~~~i~~~~~~~~l~dr-~grr~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 437 (505)
T TIGR00898 365 GLVELPAKLITLLLIDR-LGRRYTMAASLLLAGVALLLLLFVPV------DLYFLRTALAVLGKFGITSAFQMVYLYTAE 437 (505)
T ss_pred HHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456677889999999 79999999999888887766655421 111223333444555666666777888888
Q ss_pred ccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-hhhhHHHHHHHHHHHHHHH
Q 035916 121 QATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 121 q~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-~g~~~~F~i~~~~~~~~~~ 179 (506)
.++.+ .|.....+..... +|+++++.+ +.. .++...|.+.++..+++.+
T Consensus 438 ~~p~~----------~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 438 LYPTV----------VRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred cccHH----------HHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77432 2446788888888 999999988 722 6666677665555444433
No 204
>PRK11462 putative transporter; Provisional
Probab=97.39 E-value=0.0028 Score=67.87 Aligned_cols=131 Identities=11% Similarity=-0.038 Sum_probs=80.0
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
...|.+..+|.+ ...+.+...+.....++.+++++++|| +|||+.+..+..+..+..+++.+.. ..+...++
T Consensus 251 ~~y~~~y~~g~~-~~~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 322 (460)
T PRK11462 251 MMYYVTWILGTP-EVFVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVP------MQASITMF 322 (460)
T ss_pred hhhhhhhhcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhc------hhHHHHHH
Confidence 344444445543 334456666677777888999999999 7999887765554444333332221 11223344
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccch-hHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQL-IIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~-~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+..++.+++.+...+...++.+|..|.++-+..+ |++ ..|+.+-++. +|..++..+ +++
T Consensus 323 ~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~----r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 323 VFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGK----RLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCC----CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677787777777788999887654322111 233 3366666777 888888877 555
No 205
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.38 E-value=0.0018 Score=68.27 Aligned_cols=140 Identities=10% Similarity=-0.035 Sum_probs=98.2
Q ss_pred hHHHHHHhhh-ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDYLTEV-WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~yl~~~-l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
+.+..|+.+. .+.+...++.....+.+...++-+++|+++|| +++||.+.++.....+..++..... ...
T Consensus 253 s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r-~~~~~~l~i~~~~~~~~~ll~~~~~--------~~~ 323 (410)
T TIGR00885 253 TFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY-LAAHKVLMAYAIIGMALCLGSIFAG--------GHV 323 (410)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHcC--------ChH
Confidence 3456676542 35556666767777778888999999999999 7999998888888877766666542 112
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHH-HHH---h------hhh
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAF-LFI---K------SWK 164 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~iiG~~i~~~~-~~i---~------g~~ 164 (506)
-...+.+.++..+.+-|.+.+...+..+++.. ..-...-++++|..+.|.+ +++ . |++
T Consensus 324 -~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~-----------~~s~~l~~~~~Gga~~p~l~G~~~d~~~~~~~~~~~ 391 (410)
T TIGR00885 324 -GLYCLTLCSAFMSLMFPTIYGIALKGLGQDTK-----------YGAAGLVMAIIGGGIVPPLQGFIIDMKEIAAAPAVN 391 (410)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----------hhHHHHHHHHhccchHHHHHHHHHHHhcccccCccc
Confidence 24566677777877789999999988754331 1123333344888888887 887 2 488
Q ss_pred HHHHHHHHHHHH
Q 035916 165 IKFGILAMFTTV 176 (506)
Q Consensus 165 ~~F~i~~~~~~~ 176 (506)
.+|.++.++.+.
T Consensus 392 ~~~~~~~~~~~~ 403 (410)
T TIGR00885 392 TSFILPLLCFAV 403 (410)
T ss_pred hHHHHHHHHHHH
Confidence 899998877654
No 206
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.0023 Score=67.94 Aligned_cols=135 Identities=16% Similarity=0.043 Sum_probs=109.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.++.|.+..+|.++..+.............+.++--.+++| +|||++..++.++..++.+++.+.. ..+..+
T Consensus 257 s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~------~~~~~l 329 (467)
T COG2211 257 SIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTP------AGSVVL 329 (467)
T ss_pred hhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhc------CcchHH
Confidence 445677777899999999888888888888888999999999 8999999999999999999988874 235677
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.++...+.++|.+...+-.-++++|..|.++-+.- .|+-.-.|+.+-+.. +|..++..+ +++
T Consensus 330 ~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG---~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 330 IVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTG---VRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred HHHHHHHHHHHhhccccccHHHhcchhhHHHHHhC---CCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999998765432211 113456677888888 999888876 655
No 207
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.31 E-value=0.0051 Score=63.81 Aligned_cols=152 Identities=12% Similarity=0.187 Sum_probs=115.6
Q ss_pred hhHHHHHHhh---------hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccc
Q 035916 15 FWMMMDYLTE---------VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKP 85 (506)
Q Consensus 15 ~~~l~~yl~~---------~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~ 85 (506)
...+.+++++ .+|++..+.+.+...+.+...++-.+.|++..|..|++++..+|+....++..++.+++..
T Consensus 219 l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~ 298 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL 298 (403)
T ss_pred HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556666664 5899999999999999999999999999999988999999999999999998888877542
Q ss_pred cccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-H----HHHHHHHH-HH
Q 035916 86 ECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-V----PNILSIAF-LF 159 (506)
Q Consensus 86 ~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-i----G~~i~~~~-~~ 159 (506)
.+.+.+..+++++++|+|.+.....+...|.-.++.. .-+...|=.+. + |.++|-.+ ..
T Consensus 299 -----~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~a----------G~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 299 -----GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRA----------GLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred -----ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcch----------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999998888888877654332 23334333333 3 33333333 11
Q ss_pred H---------hhhhHHHHHHHHHHHHHHHHH
Q 035916 160 I---------KSWKIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 160 i---------~g~~~~F~i~~~~~~~~~~~f 181 (506)
. .+|...|.+.++.+++++.+.
T Consensus 364 ~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 364 VRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 1 568889999999998887754
No 208
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.20 E-value=0.0014 Score=66.90 Aligned_cols=103 Identities=9% Similarity=-0.022 Sum_probs=76.3
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..+..|+++.+|+++.+++.+...+.....++.+++|+++|| +|||+.+..+......+..++.....+ ..+...
T Consensus 246 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 320 (366)
T TIGR00886 246 SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDR-LGGARKLLMSFLGVAMGAFLVVLGLVS----PLSLAV 320 (366)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHh-hccchhHHHHHHHHHHHHHHHHhcCCC----cchHHH
Confidence 446678888999999999999999888889999999999999 799998888877776666655543211 013444
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccc
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQAT 123 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~ 123 (506)
....+.+..++.|...+...++.++..+
T Consensus 321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 348 (366)
T TIGR00886 321 FIVLFVALFFFSGAGNGSTFALVPHIFR 348 (366)
T ss_pred HHHHHHHHHHHhccccchhhhcchhhch
Confidence 5556666667777777777777777653
No 209
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0012 Score=71.61 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=115.3
Q ss_pred cchhhhhhhhchhH----HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHH--HHHHHHHHhhhh
Q 035916 4 LSWSDVFVAFVFWM----MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMI--LVSSFAYTAVIK 77 (506)
Q Consensus 4 ~~~~~~fs~yg~~~----l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti--~~~~~~~~iG~~ 77 (506)
+.++..|.+.|..+ +..|.. ..|+++.+++.+++.......++-++.|++||+. ..++.. .++.+...+..+
T Consensus 303 ~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 303 LALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHHHHH
Confidence 34556666666322 344444 7899999999999999999999999999999994 433333 334444444443
Q ss_pred hhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHH
Q 035916 78 FLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIA 156 (506)
Q Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~ 156 (506)
.++.. .....+..--++.++..|.+-.+.+....|....+ +....+.+..... ++.++++-
T Consensus 381 ~~p~~--------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~----------~l~~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 381 FLPFA--------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE----------KLSNAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred HHHHh--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh----------hcchHHHHHHHHhHHHHHcCcc
Confidence 44433 23455555666778888887777777777766432 3567899999999 99999988
Q ss_pred H-HHH---hh-hhHHHHHHHHHHHHHHHHHHhcC
Q 035916 157 F-LFI---KS-WKIKFGILAMFTTVSTLVFLSGS 185 (506)
Q Consensus 157 ~-~~i---~g-~~~~F~i~~~~~~~~~~~f~~~~ 185 (506)
+ +++ .| |...|..+.+.++++....+...
T Consensus 443 iag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 443 IAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 8 777 44 99999999999888887655543
No 210
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.16 E-value=0.0013 Score=52.33 Aligned_cols=55 Identities=20% Similarity=0.100 Sum_probs=47.9
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAY 72 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~ 72 (506)
+.+..|++ +.|++..+.+.+.++--....+.+++.|+++|| .||+|.+.....+.
T Consensus 21 Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 21 PFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLFM 75 (77)
T ss_pred hhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHHH
Confidence 55667776 489999999999999999999999999999999 79988887776654
No 211
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.0067 Score=61.84 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=94.6
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
.+-|+|.++++.+++..+.......+++=++++|.--+|+..+.....+.+|.+-+.+.. .+.+.+. .+++
T Consensus 236 i~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P-------~~~~~lw--~~ll 306 (395)
T COG2807 236 IDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP-------GQLPILW--ALLL 306 (395)
T ss_pred HHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh-------hhHHHHH--HHHH
Confidence 357999999999999999999999999999999988888888888889999988777652 2333223 5889
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHH---HHH-HHH----hhhhHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILS---IAF-LFI----KSWKIKFGI 169 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~---~~~-~~i----~g~~~~F~i 169 (506)
++|.|+.-|-...++.|..++ +++. =+.--++. +|..++ |.+ +++ .+|+.....
T Consensus 307 G~G~G~~F~laL~li~~rs~~--a~~A----------a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~ 369 (395)
T COG2807 307 GLGQGGAFPLALTLILLRSSD--AAIA----------AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVL 369 (395)
T ss_pred hCccchHHHHHHHHHHhhcCC--hHHH----------HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHH
Confidence 999999999999999975543 3222 12233567 777654 555 666 667776543
No 212
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=96.92 E-value=0.017 Score=60.46 Aligned_cols=142 Identities=11% Similarity=0.007 Sum_probs=95.2
Q ss_pred hhhhhhhchhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccccc
Q 035916 7 SDVFVAFVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPE 86 (506)
Q Consensus 7 ~~~fs~yg~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~ 86 (506)
|+.+.+-..+....|..+.+| +...+.+...+|+.......+.|-|+.|+ .|=|-+..++..+..+|..+=.++..|.
T Consensus 56 SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~ 133 (480)
T KOG2563|consen 56 SNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPF 133 (480)
T ss_pred cCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 333343333445667777777 77788889999999999999999999999 7999999999999999988877776653
Q ss_pred ccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 87 CIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 87 ~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
-.+.....+...|=.+.+...-.+. ..++-++...-. ++| |..+-..=-+++ +|.+++.++ +.+
T Consensus 134 v~~~f~~~l~~~Gq~iaa~Aq~Fim-~lPskiA~~WF~--~~q-------ra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 134 VPPLFRRPLTHTGQSIAAAAQPFIL-GLPSKIAAVWFP--PDQ-------RAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred ccccchhhhhHHhHHHHHHhhhHhh-ccccHHHHhhCC--cch-------hhhhhhHHHhcchHHHHHHhhcccee
Confidence 2211222355566666666554443 233333333222 232 335566666777 888888887 554
No 213
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=96.91 E-value=0.036 Score=54.34 Aligned_cols=109 Identities=9% Similarity=-0.099 Sum_probs=77.0
Q ss_pred hchhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCch
Q 035916 13 FVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 13 yg~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~ 92 (506)
|..+....-+++++|+|+++.+.+-.+-..+.++ .++.|.+.|+ .|.+-++.+|.....+|+..+.+.....- +...
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~i-~~~~ 95 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGRI-PSLP 95 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCcc-Cccc
Confidence 3345556678889999999999999999988886 5899999999 79999999999999999999887643110 1123
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhccccc
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATN 124 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~ 124 (506)
.+.+.+...+.+.|.+.+....-.--.+.|++
T Consensus 96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred hHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 45555555555555555433332333356643
No 214
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.00096 Score=69.79 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=96.7
Q ss_pred hhhhhHHHHhHhhhhhhhhhhccccccccccccccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchH
Q 035916 324 LLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSL 402 (506)
Q Consensus 324 l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~ 402 (506)
+|..-.+.-++..|+...+- .|+. ++. |++|.++=.++.+..++. +-
T Consensus 73 l~~vf~v~~~i~sPl~gyLa-------dryN--R~~v~~vG~~iW~~Av~~~~fs-----------------------~~ 120 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLA-------DRYN--RKRVIAVGIFIWTLAVFASGFS-----------------------NH 120 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHH-------hhcC--cceEEeeHHHHHHHHHHHHHHH-----------------------HH
Confidence 45444555566788888776 4432 222 888888877766544432 45
Q ss_pred HHHH-HHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcc
Q 035916 403 FWLL-PQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLS 481 (506)
Q Consensus 403 ~wli-~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~ 481 (506)
+||+ ..--+.|+||...+|....++.+..|+..||+++|+|+++.-+|+.+|....+.+...| ..|-
T Consensus 121 Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~Wr------- 188 (493)
T KOG1330|consen 121 FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWWR------- 188 (493)
T ss_pred HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cceE-------
Confidence 6655 57789999999999999999999999999999999999999999999887766665544 2353
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Q 035916 482 RLDNYYWLLAALTAANLAVLIIA 504 (506)
Q Consensus 482 ~l~~~~~lla~l~~v~~~~f~~~ 504 (506)
+=|+.-++++++..++-.++
T Consensus 189 ---~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 189 ---WAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred ---EEEEeehHHHHHHHHHHHhh
Confidence 12455677777766554433
No 215
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.84 E-value=0.0085 Score=63.89 Aligned_cols=122 Identities=16% Similarity=0.125 Sum_probs=89.3
Q ss_pred HHHhh-hccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCch-hHHHHHHHHHHHhhhhhh-cccccccccCCchHHHH
Q 035916 20 DYLTE-VWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISK-YWMILVSSFAYTAVIKFL-FYDYKPECIGEGQKILL 96 (506)
Q Consensus 20 ~yl~~-~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr-~~ti~~~~~~~~iG~~~l-~~~~~~~~~~~~~~~~~ 96 (506)
.|+.+ +.+-+.+--|+++++.....-+..+.-|+-.-| -|+ ||-++.|.++..+|+++= ++.-.| ......+
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~----~~~~y~m 133 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVP----NGVKYLM 133 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcc----cchHHHH
Confidence 34432 377888889999999998888899999999998 465 888889999999998776 555444 2256788
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF 157 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~ 157 (506)
.+++++.|+|.|.. ...-++++|- ..+++ |.++++-.-.+. +|..+||.+
T Consensus 134 L~~R~l~Gvg~~n~-a~lR~Y~a~~---s~~~d-------R~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 134 LVARILTGVGVGNF-AVLRAYIADA---STVED-------RPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHcCcCcccH-HHHHHHHHhc---cCccc-------hHHHHHHhhhHHHHHHHHhHHH
Confidence 88999999998654 4556677752 23332 336677766677 777777776
No 216
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=96.75 E-value=0.034 Score=47.51 Aligned_cols=60 Identities=13% Similarity=0.021 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhh
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYA 461 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~ 461 (506)
.++.....++.+++.-...+.....+.+..|++.|+..+|+......+|..+++.+....
T Consensus 51 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 110 (141)
T TIGR00880 51 ITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHH
Confidence 445556678999999999999999999999999999999999999999999988775543
No 217
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=96.65 E-value=0.043 Score=56.94 Aligned_cols=124 Identities=10% Similarity=-0.092 Sum_probs=77.1
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.|+++.+|++..+.+.+.........++.++++++.|| .||.. ..+.....++.+.+...... .....+.+..+
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 305 (394)
T PRK11652 232 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLM--WQSVICCLLAGLLMWIPGWF---GVMNVWTLLVP 305 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHh---ccccHHHHHHH
Confidence 46667789999888887777666666677777777777 45322 22322333332222211100 00123455667
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
..+.++|.|..-|...+...|..++ ++......+.... +|..+++.+ +++
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~g~~~~~~~~~~~lg~~~~~~~~~~~ 357 (394)
T PRK11652 306 AALFFFGAGMLFPLATSGAMEPFPY-----------LAGTAGALLGGLQNIGSGLAALLSAML 357 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-----------cchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7888999999999999988876532 1234566666677 888888887 666
No 218
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.63 E-value=0.039 Score=53.00 Aligned_cols=134 Identities=12% Similarity=0.097 Sum_probs=93.2
Q ss_pred hhccChh--HHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHH
Q 035916 24 EVWMISF--VHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALG 101 (506)
Q Consensus 24 ~~l~~~~--~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~ 101 (506)
.+++.+. ...+.+...+.....+..++.|.++||+ |||+.+..+.....++.++..+... .....+.....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 102 (338)
T COG0477 30 STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRL 102 (338)
T ss_pred HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHH
Confidence 3444444 4678888888888888889999999996 9998888888765566444444421 13456666777
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHH-HH-HHHHHHHHH-HHH--h---hhhHHHHHHHHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGL-SL-VPNILSIAF-LFI--K---SWKIKFGILAMF 173 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~-~i-iG~~i~~~~-~~i--~---g~~~~F~i~~~~ 173 (506)
+.+++.|...|...++.+|.+++ . + ++....+.... .. +|..+++.+ +.+ . +|+..|.+....
T Consensus 103 ~~g~~~~~~~~~~~~~~~~~~~~-~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 103 LQGLGGGGLLPVASALLSEWFPE-A-T-------ERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCc-h-h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 78999999999999999998866 2 1 23455666666 46 788888766 444 3 677755554433
No 219
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.60 E-value=0.019 Score=61.84 Aligned_cols=162 Identities=9% Similarity=-0.111 Sum_probs=101.7
Q ss_pred hHHHHHHhhhccChhHH----HHHHHHHHHHHHHhHH-HHHH---HhhhccCchhHH--HHHHHHHHHhhhhhhcccccc
Q 035916 16 WMMMDYLTEVWMISFVH----AAGIVNIFWGTAHVLP-LAIR---YLVDTTISKYWM--ILVSSFAYTAVIKFLFYDYKP 85 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~----a~~i~~~~~~~~~~~~-llgG---~laD~~lGr~~t--i~~~~~~~~iG~~~l~~~~~~ 85 (506)
+.+.+|..+..+.+... .+.+.+.-.....+.. ++.. .+.||..+.+.. +.+|.++..+|.+.+.+....
T Consensus 293 s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~ 372 (475)
T TIGR00924 293 TSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF 372 (475)
T ss_pred hHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33555555544333211 3444444444444443 3332 456653333333 367888888888777653110
Q ss_pred cc-cCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--
Q 035916 86 EC-IGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-- 160 (506)
Q Consensus 86 ~~-~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-- 160 (506)
.. ....+.+.+....++.++|.....|...++..++-++ + .|....+.++.+. +|..++..+ ...
T Consensus 373 ~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~----~------~~g~~~g~~~l~~~~g~~l~~~~~~~~~~ 442 (475)
T TIGR00924 373 ADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ----R------LMGQMLGMWFLAQAMGSLLGGYLATFGAV 442 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH----H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0123567788899999999999999999999975533 2 3568889999999 999999877 443
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHhcCcc
Q 035916 161 -KSWKIKFGILAMFTTVSTLVFLSGSSS 187 (506)
Q Consensus 161 -~g~~~~F~i~~~~~~~~~~~f~~~~~~ 187 (506)
.+|...|...++.+++..++++..+|+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (475)
T TIGR00924 443 PQGVTGVFGKIGLVTLLVGVVMALMVPW 470 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 578878887777777666666554443
No 220
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=96.58 E-value=1.1 Score=46.21 Aligned_cols=154 Identities=12% Similarity=0.066 Sum_probs=95.0
Q ss_pred hhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHH
Q 035916 24 EVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLI 103 (506)
Q Consensus 24 ~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~ 103 (506)
...|.+..++..+.........+.+..=|.++|+ +||||...+......+--.+-..+ | +...+++-..+.
T Consensus 106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~s--p------nf~~L~~f~~l~ 176 (528)
T KOG0253|consen 106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGAS--P------NFASLCVFRALW 176 (528)
T ss_pred hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCC--C------CeehhhHHHHHH
Confidence 3567888888888888777778888888999999 899998877666554432222222 2 445667777889
Q ss_pred HhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHHHHH----hhhhHHHH-HHHHHHHHHH
Q 035916 104 AFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAFLFI----KSWKIKFG-ILAMFTTVST 178 (506)
Q Consensus 104 ~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~iiG~~i~~~~~~i----~g~~~~F~-i~~~~~~~~~ 178 (506)
++|.|+ -|...+.-++-.+..+. . .. .... ++|+ +|.++.-.+.|+ .||++-.. ...-.++++.
T Consensus 177 ~~g~gg-~pv~~~~yle~lp~~~r---~----~~-~V~~-~~wa-ig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~ 245 (528)
T KOG0253|consen 177 GFGVGG-LPVDSAIYLEFLPSSHR---W----LL-TVMS-FFWA-IGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAAR 245 (528)
T ss_pred hccCCC-ccHhHHHHHHhccCcCC---C----cc-hhHH-HHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHH
Confidence 999999 88888877765544321 1 22 2222 3333 454444444332 78887644 4444555555
Q ss_pred HHHH-hcCcceeecCCCCChhH
Q 035916 179 LVFL-SGSSSYRRRKPQGSSLT 199 (506)
Q Consensus 179 ~~f~-~~~~~~~~~~p~g~~l~ 199 (506)
..++ ..+++|... +|++-+
T Consensus 246 f~~w~~ESpRf~~~--~G~~~k 265 (528)
T KOG0253|consen 246 FLVWVYESPRFYLA--KGDDYK 265 (528)
T ss_pred HHhhcccCcchhhh--cCChHH
Confidence 5443 445555432 455543
No 221
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.56 E-value=0.0056 Score=67.15 Aligned_cols=264 Identities=13% Similarity=0.005 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccc
Q 035916 35 GIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSI 114 (506)
Q Consensus 35 ~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~ 114 (506)
.....+....+-.+..+.-.+ +.-|+.++ ..+.+|...+.-.+... .......++...+...+ +..++|+
T Consensus 10 ~~~~~~~~~d~~~~~~~~~~~-~~~g~~~s-----~~~il~~e~~e~~a~~g---~~~nlv~ylt~~~~~~~-~~aa~~v 79 (571)
T KOG1237|consen 10 VIYHDFTSVDYRGPLLGSSIA-FKTGGWLS-----APFILGNEVLERLAFFG---LVSNLVTYLTLELHASG-GGAANNV 79 (571)
T ss_pred hhccccceeeccCCccccccc-ceechhHh-----HHHHHHHHHHHHHhHhc---chhHHHHHHHHHhccch-HHHHHHH
Confidence 334444445555555544444 23444444 34455554444433221 01234566666666666 8999999
Q ss_pred hhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcceeecC-
Q 035916 115 DRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAFLFIKSWKIKFGILAMFTTVSTLVFLSGSSSYRRRK- 192 (506)
Q Consensus 115 ~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~~~i~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~- 192 (506)
+++.|+++...--. + .+.-.|..+|+.+ +++++..+. .|+++...++.++..+.+ .+....
T Consensus 80 ~~f~G~~~~~~l~g--~----~laD~f~gry~tI~~~s~i~~~G--------~~~lt~~a~~~~l~p~~~---~~~~~~~ 142 (571)
T KOG1237|consen 80 NAFGGTQFLLPLLG--A----FLADSFLGRYFTINIGSLISLLG--------LFGLTLSAMIPALLPFMC---KFKPGGN 142 (571)
T ss_pred HHHhhHHHHHHHHH--H----HHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhcCCccc---cCCCCCC
Confidence 99999999662211 1 4567799999999 999875422 455555555544433322 111111
Q ss_pred CCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhhhhhcCcccccccccCcccccccchh
Q 035916 193 PQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKAAIILPNKTLRQQERNRWRLCSVTEV 272 (506)
Q Consensus 193 p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~~~~~~~~v 272 (506)
..++|-+....++..+++......- ..+..+.+..+.. ++++..
T Consensus 143 ~c~~~s~~q~~~~~~~l~lia~G~g--------------------g~r~~~~~fGadQ----------------fd~~~~ 186 (571)
T KOG1237|consen 143 VCESPSKLQLAVLYGALYLIALGAG--------------------GIRPCLLAFGADQ----------------FDELDP 186 (571)
T ss_pred cccCcchHHHHHHHHHHHHheeccC--------------------CCCCcchhhcccc----------------cCccCc
Confidence 1122222233344444433211000 0000111111000 111111
Q ss_pred hhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcC-CCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccc
Q 035916 273 EETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVING-KDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGW 351 (506)
Q Consensus 273 e~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~-~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~ 351 (506)
++++ .....+.|..++|..+.++.|+-.++. +.. ++.+-++..+..|.+.+++|.|....+.+|..
T Consensus 187 ~~~~--------~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p---- 253 (571)
T KOG1237|consen 187 VEVK--------GIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGFGIPTVLNALAILIFLPGFPFYRYKKP---- 253 (571)
T ss_pred chhh--------CcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeeccHHHHHHHHHHHHHHcCceeEEeeCC----
Confidence 1121 134578899999998888888876654 333 68888999999999999999999887765321
Q ss_pred cccccccchhHhHHHHHHHHHHHHHH
Q 035916 352 NAVAHVVGFAMSMILSILCCVTAAIV 377 (506)
Q Consensus 352 r~~~~~~~ig~G~~l~~ls~~~~~~~ 377 (506)
.+.|. +.+|.++.+++......+
T Consensus 254 --~gsp~-t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 254 --RGSPK-TRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred --CCCch-hHHHHHHHHHHHHHhccC
Confidence 12232 788888888887665443
No 222
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.072 Score=57.11 Aligned_cols=127 Identities=10% Similarity=-0.126 Sum_probs=85.4
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCC-chHHHHHHHHH
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGE-GQKILLYTALG 101 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~-~~~~~~~~~l~ 101 (506)
..+-|.++.+|.......+....++.+++.++-|| +|||+.++.+..++.+..+++++......... +-......++.
T Consensus 297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~ 375 (485)
T KOG0569|consen 297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIF 375 (485)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34678999999999999999999999999999999 89999999999998888777776543211000 00111223333
Q ss_pred HHHhhcc-cccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 102 LIAFGIS-GHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 102 l~~~G~g-~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+..++.+ +..|...-++++.++.++ |..++++-+... +..++-... +.+
T Consensus 376 ~~~~~f~~G~gpi~~fi~aELf~~~~----------R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 376 LFIISFAIGPGPIPWFIGAELFPQSA----------RSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHhhhcCCCchhHHHHHHhCCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222222 345666667777775433 457788877777 666655555 555
No 223
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.37 E-value=0.091 Score=58.64 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=113.1
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc------------------
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK------------------ 84 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~------------------ 84 (506)
.++++++..+.+.+.+.+-....+..++-.|.+-| .=|-|-|-+|.+++.+|.++.++...
T Consensus 124 ErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~ 202 (735)
T KOG3626|consen 124 ERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN 202 (735)
T ss_pred hhhcCCCCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence 35789999999999999999999999999999988 57888888999999999988887622
Q ss_pred c--------------ccc-----C----C---chHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccch
Q 035916 85 P--------------ECI-----G----E---GQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQL 138 (506)
Q Consensus 85 ~--------------~~~-----~----~---~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~ 138 (506)
+ .|. . . .-+.+++.|.++.|+|..-+-|--.+++=|-..++. ..
T Consensus 203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~----------Sp 272 (735)
T KOG3626|consen 203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKN----------SP 272 (735)
T ss_pred CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccC----------Cc
Confidence 1 000 0 0 023367788999999998888877777766443322 34
Q ss_pred hHHHHHHHHH-HHHHHHHHH-HHH------h----------------hhhHHHHHHHHHHHHHHHHHHh
Q 035916 139 IIFSFWGLSL-VPNILSIAF-LFI------K----------------SWKIKFGILAMFTTVSTLVFLS 183 (506)
Q Consensus 139 ~~f~~~y~~i-iG~~i~~~~-~~i------~----------------g~~~~F~i~~~~~~~~~~~f~~ 183 (506)
.++...|..- +|.++|.++ ++. . .||++|++++..++++.+-++.
T Consensus 273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888777 999999888 655 2 3999999999887777665444
No 224
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=96.35 E-value=0.052 Score=56.36 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=79.6
Q ss_pred hhch-hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCch---hHHHHH-HHHHHHhhhhhhccccccc
Q 035916 12 AFVF-WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISK---YWMILV-SSFAYTAVIKFLFYDYKPE 86 (506)
Q Consensus 12 ~yg~-~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr---~~ti~~-~~~~~~iG~~~l~~~~~~~ 86 (506)
+|+. .-+..|+++ .|++.. ++........ .+.+..++++|| +.| |+.... ...+..++...+..+.
T Consensus 208 ~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~---~g~~g~~~~~d~-~~r~~~r~~~~~~~~~~~a~~~~~~~~~~--- 278 (368)
T TIGR00903 208 FDNLAIWLEAALRP-AGLEDI-AGDAVALAIL---AGLIGVAVIPDR-VARAGLRSIYIRAAALLIAAFFLALAFEL--- 278 (368)
T ss_pred HHHHHHHHHHHHHH-CCCChH-HHHHHHHHHH---HHHHHHHHhhHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4443 335667754 567754 4333333222 233446899998 444 333222 3333333333333221
Q ss_pred ccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-hhh
Q 035916 87 CIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-KSW 163 (506)
Q Consensus 87 ~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-~g~ 163 (506)
+.......+.+.+++.+...+...++.+|.++++ .|.....+.+..- +|+..++.+ +.+ .|.
T Consensus 279 -----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~----------~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~ 343 (368)
T TIGR00903 279 -----NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE----------LHGKAAGAIGFTSRAISVALALAAMLFISSA 343 (368)
T ss_pred -----ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh----------hcCcccchhhHHHHHHHHHHHHHHHHHhcCH
Confidence 1122233344455556666667888889888442 2457788888888 999888887 655 466
Q ss_pred hHHHHHHHHHHHHHHH
Q 035916 164 KIKFGILAMFTTVSTL 179 (506)
Q Consensus 164 ~~~F~i~~~~~~~~~~ 179 (506)
+..|.+-++..+++.+
T Consensus 344 ~~~f~~~~~~~~i~~~ 359 (368)
T TIGR00903 344 EAYFTFLAILITIAFA 359 (368)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655555544444
No 225
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=2 Score=45.93 Aligned_cols=126 Identities=14% Similarity=0.065 Sum_probs=68.5
Q ss_pred hhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCC--CCCCCCCccc
Q 035916 323 LLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGL--IDKPDEKIPM 400 (506)
Q Consensus 323 ~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~--~~~~~~~~~i 400 (506)
.+..++.+.+-+..-+-...+.++.++.||++.+|. |.+|.++..+.++..-+- ...+.++ .|++.....-
T Consensus 279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l~------~p~dap~~~t~~~~~~~~~ 351 (461)
T KOG3098|consen 279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHLS------FPNDAPLRPTDSPPLLFTP 351 (461)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhcc------ccccCCCCCCccccccccc
Confidence 345556666655555544445444422244443343 777777766554332211 1111111 0111111112
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhh
Q 035916 401 SLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTL 456 (506)
Q Consensus 401 s~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~ 456 (506)
+..--...+++.|++|.+....-+..+....| +-+...-+++-+..++++-++.+
T Consensus 352 ~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f 406 (461)
T KOG3098|consen 352 SYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFF 406 (461)
T ss_pred chhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhh
Confidence 33334456799999999999999999999884 44455666666666666665543
No 226
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.034 Score=59.61 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=85.0
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCch------hHHHHHHHHHHHhhhhhhcccccccccCCc
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISK------YWMILVSSFAYTAVIKFLFYDYKPECIGEG 91 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr------~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~ 91 (506)
+=.|+++.||++..+.+.+...=.....+..+++|++||+...| +|-++-+......+..++.+.-.+.+....
T Consensus 281 ~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~ 360 (466)
T KOG2532|consen 281 LPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLL 360 (466)
T ss_pred hhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchH
Confidence 34688999999999999999888888999999999999996541 222222222333333333333222110001
Q ss_pred hHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH------hhh
Q 035916 92 QKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI------KSW 163 (506)
Q Consensus 92 ~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i------~g~ 163 (506)
....+.++..+.++-.+++. -...+. .|+ .-.-....--+.. +..+++|.+ +.+ -.|
T Consensus 361 a~~~l~~~~~~~g~~~~Gf~-------~~~~~~-apq-------~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW 425 (466)
T KOG2532|consen 361 AVILLTIAIGLSGFNISGFY-------KNHQDI-APQ-------HAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEW 425 (466)
T ss_pred HHHHHHHHHHHcccchhhhH-------hhhhhc-cch-------HHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHH
Confidence 11222222233333333322 221110 111 1123334334444 555666666 555 479
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 035916 164 KIKFGILAMFTTVSTLVFLSG 184 (506)
Q Consensus 164 ~~~F~i~~~~~~~~~~~f~~~ 184 (506)
+..|.+.++.++++.++|...
T Consensus 426 ~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 426 RIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHhchheeEe
Confidence 999999999999988877553
No 227
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=96.19 E-value=0.097 Score=55.12 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=77.6
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccc--cccccCCchHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDY--KPECIGEGQKILL 96 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~--~~~~~~~~~~~~~ 96 (506)
-.|+++.+|++..+.+.......+...+.+.+.+.+.++. +++|.+.....+..+|.+++.+.. .+ ......
T Consensus 242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig~~l~~~~~~~~~-----~~~~~~ 315 (413)
T PRK15403 242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVGLALLIVGNLLWP-----HVWLWS 315 (413)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHHHHHHHHHHHcc-----ccHHHH
Confidence 4577778899999999887766666666555555554442 344554444444445544443321 11 123335
Q ss_pred HHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHHHHH
Q 035916 97 YTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGILAM 172 (506)
Q Consensus 97 ~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i~~~ 172 (506)
+.++.+.++|.|...|+..+..-.|.+. ++. +.-+.+.... .+...+... +++ ++=...|....+
T Consensus 316 ~~~~~l~~~G~~~~~p~~~~~al~~~~~--~~G---------~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 384 (413)
T PRK15403 316 VLGTSLYAFGIGLIFPTLFRFTLFSNNL--PKG---------TVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAV 384 (413)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhccCCC--CCc---------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 6788889999999999998644333322 221 2223333344 455555555 665 344445544443
Q ss_pred HH
Q 035916 173 FT 174 (506)
Q Consensus 173 ~~ 174 (506)
+.
T Consensus 385 ~~ 386 (413)
T PRK15403 385 VA 386 (413)
T ss_pred HH
Confidence 33
No 228
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.043 Score=56.71 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=99.2
Q ss_pred hhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccch
Q 035916 322 LLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMS 401 (506)
Q Consensus 322 ~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is 401 (506)
.++-..-.+.-++.-|+...+..... .|. .|-+|++++..+.++.++.+ |
T Consensus 109 G~LFaskA~~qllvnp~~G~l~~~iG---y~i-----pm~~Gl~vmf~sTilFafg~----------------------s 158 (464)
T KOG3764|consen 109 GLLFASKALVQLLVNPFFGNLIDRIG---YKI-----PMVAGLFVMFLSTILFAFGN----------------------S 158 (464)
T ss_pred hHHHHHHHHHHHHhcccchhhHHHhc---ccc-----HHHHHHHHHHHHHHHHHHcc----------------------h
Confidence 34444555666666666666653222 221 28899999999988887764 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhh-HHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCc
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMI-FRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNL 480 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~m-ks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~ 480 (506)
..-++..-.++|+|..+.+..|++.+.+.-|++- ||..||.-.-..++|..+|+...++....- +.-.
T Consensus 159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-----Gk~a------ 227 (464)
T KOG3764|consen 159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-----GKSA------ 227 (464)
T ss_pred hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-----CCcC------
Confidence 3356677899999999999999999999999996 599999999999999999988766654322 1111
Q ss_pred chhHHHHHHHHHHHHHHHHhhhh
Q 035916 481 SRLDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 481 ~~l~~~~~lla~l~~v~~~~f~~ 503 (506)
=|.+++.++++..++=.+
T Consensus 228 -----PFlVL~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 228 -----PFLVLAIVLLLDGALQLL 245 (464)
T ss_pred -----cHHHHHHHHHHHHHHHHh
Confidence 268888888887765444
No 229
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.06 Score=52.84 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=90.5
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.|+.+..|+.+.+-+.++-+-.+-..++..+.|-++|+ .||||+-+.-++.|.+..+ .-+ +.+.-.+.+|
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsCi----TKh-----SpqYkVLmVG 130 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSCI----TKH-----SPQYKVLMVG 130 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHHH----hhc-----CCceEEEeeh
Confidence 56667788888888888777677777888888999999 8999988877777776532 111 1234456677
Q ss_pred HHHHHhhcccccccchh-hhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-hhhhHHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDR-FIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-KSWKIKFGILAMFTT 175 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~-~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-~g~~~~F~i~~~~~~ 175 (506)
+++=++.+...-..--+ ++++.-+.++-++...++.--+..|-|.-... +..+.|-.+ .++ .|.-..|-.+++...
T Consensus 131 R~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLa 210 (454)
T KOG4332|consen 131 RVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLA 210 (454)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 77777777664433322 33332222211110001111112333333333 444555555 555 777778887777777
Q ss_pred HHHHHHHh
Q 035916 176 VSTLVFLS 183 (506)
Q Consensus 176 ~~~~~f~~ 183 (506)
++..+.+.
T Consensus 211 igmAvil~ 218 (454)
T KOG4332|consen 211 IGMAVILS 218 (454)
T ss_pred HHHHHHHh
Confidence 77665544
No 230
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=95.82 E-value=0.054 Score=58.56 Aligned_cols=162 Identities=9% Similarity=-0.044 Sum_probs=95.7
Q ss_pred hHHHHHHhhhccChhH----HHHHHHHHHHHHHHhHHHHHHHhhhccCchhH-------HHHHHHHHHHhhhhhhccccc
Q 035916 16 WMMMDYLTEVWMISFV----HAAGIVNIFWGTAHVLPLAIRYLVDTTISKYW-------MILVSSFAYTAVIKFLFYDYK 84 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~----~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~-------ti~~~~~~~~iG~~~l~~~~~ 84 (506)
..+..|..+..+.+.. .++.+.+.......++.++.|.+.|| +|||+ -+.+|.++..+|.+.++....
T Consensus 290 ~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~r-l~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~ 368 (489)
T PRK10207 290 TSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTH-LGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGM 368 (489)
T ss_pred cHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHH-HhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666543333211 22333333333344455556799999 79887 367788887777655432110
Q ss_pred --ccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 85 --PECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 85 --~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
...+...+.+.+....++.++|.++..|...+++.+.- |++ .+......++.+. +|..++..+ .+.
T Consensus 369 ~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~a----P~~------~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 369 WFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALV----PQH------LMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred hhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00001123455667888999999999999999998654 322 3456678888888 999888776 433
Q ss_pred -h------------hhhHHHHHHHHHHHHHHHHHHhcCcce
Q 035916 161 -K------------SWKIKFGILAMFTTVSTLVFLSGSSSY 188 (506)
Q Consensus 161 -~------------g~~~~F~i~~~~~~~~~~~f~~~~~~~ 188 (506)
. .+...|..-++..++..+++....|++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~ 479 (489)
T PRK10207 439 AVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWL 479 (489)
T ss_pred ccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 245566655555544444444434433
No 231
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=95.82 E-value=0.075 Score=54.56 Aligned_cols=99 Identities=11% Similarity=0.015 Sum_probs=60.8
Q ss_pred HHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhc
Q 035916 41 WGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120 (506)
Q Consensus 41 ~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~d 120 (506)
+..-+-+.++.|++-|| +|||+|+..+.+++.+-.+++...-.+ ..-..+++.+..++..+. .+++.+.-+
T Consensus 391 slaefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~r----n~~tvllf~arafisg~f----qvaYvYtPE 461 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKTR----NAYTVLLFTARAFISGAF----QVAYVYTPE 461 (528)
T ss_pred HHhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCc----chhHHHHHHHHHHHhchh----eEEEEecCc
Confidence 34467788999999999 999999999999998877776654221 122234555666655444 345555555
Q ss_pred ccccCCccccccccccchhHHHHHHHHH-HHHHHHHHHH
Q 035916 121 QATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAFL 158 (506)
Q Consensus 121 q~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~~ 158 (506)
.|+..- | .-...-=--.. ||+.++|.+.
T Consensus 462 VyPTav----R------atgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 462 VYPTAV----R------ATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred ccchhh----h------hcchhhhhhHHhhhhhhhhHHH
Confidence 553211 1 11222222234 8888888773
No 232
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.76 E-value=0.07 Score=59.63 Aligned_cols=61 Identities=13% Similarity=-0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhc
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAG 462 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~ 462 (506)
...++..-+++|+|+....+.+..++.+..|++.++..+|++.....+|..+|..+.+...
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~ 232 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCL 232 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445566689999999999999999999999999999999999999999988877766544
No 233
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=95.71 E-value=0.28 Score=51.59 Aligned_cols=154 Identities=13% Similarity=0.071 Sum_probs=97.9
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
...|+++.-|.+....+.+.+.-...=...=.+.+.+-.| +|-++.+.++...+.+=..+.+..+.|. ........
T Consensus 230 ~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~---~~~~~~~~ 305 (400)
T PF03825_consen 230 FSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPW---PFIVALQL 305 (400)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCc---HHHHHHHH
Confidence 3456655444666666655544444344444577888888 7999999999999888666665542220 00111223
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHH-H-HHHHHHHHH-HHH---------hhhhH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLS-L-VPNILSIAF-LFI---------KSWKI 165 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~-i-iG~~i~~~~-~~i---------~g~~~ 165 (506)
++..+-++..|.+-+....++.++.+++. +.+.-+++... . +|..+|..+ +++ ..|..
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~----------~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~ 375 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPEL----------RATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA 375 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccc----------hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 33456788888888888888887774433 22344544443 4 888888877 777 34666
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 035916 166 KFGILAMFTTVSTLVFLSGS 185 (506)
Q Consensus 166 ~F~i~~~~~~~~~~~f~~~~ 185 (506)
.+.++++..++..++|....
T Consensus 376 ~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVILF 395 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 77888888777777776543
No 234
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=95.45 E-value=0.12 Score=55.89 Aligned_cols=141 Identities=12% Similarity=0.021 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhHHHHH----HHhhhccCchhHHHHHHHHHHHhhhhhhcccccccc-cCCchHHHHHHHHHHHHhhccc
Q 035916 35 GIVNIFWGTAHVLPLAI----RYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPEC-IGEGQKILLYTALGLIAFGISG 109 (506)
Q Consensus 35 ~i~~~~~~~~~~~~llg----G~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~-~~~~~~~~~~~~l~l~~~G~g~ 109 (506)
.+.+.-.....++.++. +.+.|| ++..+.+.+|.++..+|.+.+........ ....+.+.+.....+.++|.++
T Consensus 320 ~~~s~n~i~iil~~p~~~~~~~~l~~r-~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~ 398 (500)
T PRK09584 320 QYQALNPFWIMIGSPILAAIYNKMGDR-LPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELM 398 (500)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCcC-CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHH
Confidence 33333333444554555 556666 57778889999999999888776532100 0112344677788999999999
Q ss_pred ccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-------------hhhhHHHHHHHHHH
Q 035916 110 HMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-------------KSWKIKFGILAMFT 174 (506)
Q Consensus 110 ~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-------------~g~~~~F~i~~~~~ 174 (506)
..|...+++.+.- |++ .|.+....++.+. +|+.++-.+ ... .+++..|..-++..
T Consensus 399 ~~p~g~s~~~~~a----P~~------~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 468 (500)
T PRK09584 399 ISGLGLAMVAQLV----PQR------LMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIAT 468 (500)
T ss_pred HhHHHHHHHHHhC----cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHH
Confidence 9999999998654 332 3568889998888 888777555 422 14677777666554
Q ss_pred HHHHHHHHhcCc
Q 035916 175 TVSTLVFLSGSS 186 (506)
Q Consensus 175 ~~~~~~f~~~~~ 186 (506)
++..++++...+
T Consensus 469 ~~~a~~~~~~~~ 480 (500)
T PRK09584 469 AVIAVLMLLTAP 480 (500)
T ss_pred HHHHHHHHHHHH
Confidence 433433433333
No 235
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.38 E-value=0.14 Score=53.10 Aligned_cols=137 Identities=14% Similarity=0.045 Sum_probs=97.1
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
+.+..|+.+..|.+..+++..++.+..+..++-.+|-++-.| +-..|.+...+....+-.+...+.. + ..
T Consensus 257 sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~-~~~~k~Laf~a~~~ill~~~~~l~~--------g-~v 326 (422)
T COG0738 257 SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSR-IKPEKYLAFYALIAILLLLAVALIG--------G-VV 326 (422)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHhc--------C-hH
Confidence 457788988899999999999999999999999999998887 7888877666544333222222221 2 23
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHHHHHHHHHHH-HHH---hhhhHHHH-HH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSLVPNILSIAF-LFI---KSWKIKFG-IL 170 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~iiG~~i~~~~-~~i---~g~~~~F~-i~ 170 (506)
-..++.++++..+.+-|++.+..-+-.+++++ ..+.+ .-++++|..+-|.+ +++ .|-...+. ++
T Consensus 327 ~~~~l~~ig~F~simfPTIfslal~~l~~~ts---------~~s~~--l~maivGGAiiP~l~G~i~d~~g~~~~~~~~p 395 (422)
T COG0738 327 ALYALFLIGLFNSIMFPTIFSLALKNLGEHTS---------VGSGL--LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVP 395 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhccCcccc---------cccee--eeeheecchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34577889999999999999999998875443 12222 22455777777777 888 66666655 44
Q ss_pred HHH
Q 035916 171 AMF 173 (506)
Q Consensus 171 ~~~ 173 (506)
..+
T Consensus 396 llc 398 (422)
T COG0738 396 LLC 398 (422)
T ss_pred HHH
Confidence 444
No 236
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=94.66 E-value=0.84 Score=49.19 Aligned_cols=167 Identities=14% Similarity=0.050 Sum_probs=91.1
Q ss_pred hhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccc
Q 035916 276 KCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVA 355 (506)
Q Consensus 276 k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~ 355 (506)
.+++++.-.+...-+-|.+.....+.+. |...++. .-....+...++.-++..|+...+-...- .|.+
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~-------~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~---sr~G- 71 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPH-------AWASIIWLCGPLSGLLVQPLVGYLSDRCT---SRFG- 71 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCH-------HHHHHHHHHHHHHHHHHHhHeeehhcCCC---CCCC-
Confidence 3455555555555566665544444432 2111111 11234567788888888888887775322 2332
Q ss_pred cccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC-ccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccCh
Q 035916 356 HVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEK-IPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPR 433 (506)
Q Consensus 356 ~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~-~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~ 433 (506)
+.+. +..|.+..++++......+...... + +..... ....+++.+..+.+..++--...+..-+++.+..|+
T Consensus 72 RRrp~il~g~~~~~~~l~ll~~~~~~~~~~----~--~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~ 145 (477)
T TIGR01301 72 RRRPFIAAGAALVAFAVILIGFAADIGHLF----G--DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGG 145 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCchhhhhc----c--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 2222 5556666666666655432110000 0 000001 112223333334344444445556678899999999
Q ss_pred hhH--HHHHHHHHHHhHHHHHHHhhhhhh
Q 035916 434 MIF--RYLKYIFVATMGVGIIGSTLSVYY 460 (506)
Q Consensus 434 ~mk--s~~~gl~~l~~aiG~~l~~~l~~~ 460 (506)
+.| +...+......++|+.++..+..+
T Consensus 146 ~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 146 DARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 578888888899999998876554
No 237
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.60 E-value=0.0081 Score=65.64 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=2.8
Q ss_pred HHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc--c-------------
Q 035916 21 YLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK--P------------- 85 (506)
Q Consensus 21 yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~--~------------- 85 (506)
-++.+++++.++++.+.+.+-....+..++-.+.++| --|-|-|-+|.++..+|.++.++... +
T Consensus 28 tiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~ 106 (539)
T PF03137_consen 28 TIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGN 106 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccc
Confidence 3456899999999999999999999999999999998 46778888899999999998887644 0
Q ss_pred ------cc---------------c------CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccch
Q 035916 86 ------EC---------------I------GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQL 138 (506)
Q Consensus 86 ------~~---------------~------~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~ 138 (506)
.| . ...-...+.+|-++.|+|..-+-+.-.+++=|-.++++ -.
T Consensus 107 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~----------sp 176 (539)
T PF03137_consen 107 SSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN----------SP 176 (539)
T ss_dssp ---------------------------------------------SSS--------------------------------
T ss_pred cccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc----------Cc
Confidence 11 0 01123567778889999998888887777766443322 23
Q ss_pred hHHHHHHHHH-HHHHHHHHH-HHH------------------------h-hhhHHHHHHHHHHHHHHHHHH
Q 035916 139 IIFSFWGLSL-VPNILSIAF-LFI------------------------K-SWKIKFGILAMFTTVSTLVFL 182 (506)
Q Consensus 139 ~~f~~~y~~i-iG~~i~~~~-~~i------------------------~-g~~~~F~i~~~~~~~~~~~f~ 182 (506)
-+...+|..- +|..+|.++ +.. + .||++|.+.++..++..+-++
T Consensus 177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~ 247 (539)
T PF03137_consen 177 LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLF 247 (539)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777 888877766 433 1 399999998877665554333
No 238
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=94.59 E-value=0.81 Score=49.51 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcc
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLS 481 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~ 481 (506)
.+-++.-.+++|+.|-...|........--.++.|+..+|+|+...++|+.+|+++...+.+.-...+-.+|
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW-------- 205 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW-------- 205 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc--------
Confidence 333555568999999999999999999999999999999999999999999999987765432211112345
Q ss_pred hhHHHHHHHHHHHHHHH
Q 035916 482 RLDNYYWLLAALTAANL 498 (506)
Q Consensus 482 ~l~~~~~lla~l~~v~~ 498 (506)
.|.|.+-++++++..
T Consensus 206 --~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 206 --RWLFIIEGVITLVLG 220 (495)
T ss_pred --eeehhHHHHHHHHHH
Confidence 345666666665544
No 239
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=94.23 E-value=0.022 Score=59.09 Aligned_cols=159 Identities=13% Similarity=0.180 Sum_probs=85.1
Q ss_pred cchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHH--Hhc-CCCCC-C-ceeChhhhhhhhHHHHhHhhhhhhhhh
Q 035916 269 VTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAE--VIN-GKDGG-N-FSFGPLLLLLFYYISKGRFTAFYEGFV 343 (506)
Q Consensus 269 ~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~--~~d-~~~g~-~-~~ip~~~l~~~n~i~iivl~Pl~~~~~ 343 (506)
++++++..+.+.+...++.....+...+|.....+.|.+ .++ ..+.. . -.+++-..-.+-|+.-.+..|+.+.-.
T Consensus 204 ~~~~k~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~ 283 (372)
T PF00854_consen 204 VEELKALIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGI 283 (372)
T ss_dssp HHHCCHHHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT--
T ss_pred eeeeeeeeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcc
Confidence 455666777777776666655555554444332222221 011 11110 1 224555566788888888899988222
Q ss_pred hccccccccccccc-cchhHhHHHHHHHHHHHH----HHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHh
Q 035916 344 GHLTSVGWNAVAHV-VGFAMSMILSILCCVTAA----IVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGF 418 (506)
Q Consensus 344 ~pl~~~~~r~~~~~-~~ig~G~~l~~ls~~~~~----~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l 418 (506)
.|- ...++ -++.+..+....+..+-. ..+.. .... . ....+++++|++|+|++.++||.
T Consensus 284 ~~~------~~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~-~~~~---~-----~~~~~~~~~~~~~e~~l~~~g~~- 347 (372)
T PF00854_consen 284 QPS------PPQKFGIGMVFAILAMFVAAIVEIRRLCYAQPC-GKVS---P-----WWQVPMYIFWLIPEYFLSGTGES- 347 (372)
T ss_dssp ----------HHHHHHH-HHHHHHHHTTTHHHH---HH-----TT-----T-----HHHHHHHHHHHHHHHTTTTHHHH-
T ss_pred cch------hhhhhhHHHHHHHHHHHHHHHHHhhhhhccccc-CCCC---h-----hhHHHHHHHHHHHHHHhhHHHHH-
Confidence 221 11223 233222222222222222 22111 0111 1 01236899999999999999999
Q ss_pred hhhhhHHHhhhccChhhHHHHHHHHHHH
Q 035916 419 YEKGIDMFFSDQFPRMIFRYLKYIFVAT 446 (506)
Q Consensus 419 ~~~~~lef~~~~aP~~mks~~~gl~~l~ 446 (506)
.+.|++++++|++|||..++++.++
T Consensus 348 ---~~~~~a~~~~p~~m~~~~~~~~~~~ 372 (372)
T PF00854_consen 348 ---AAYEFAPSRAPSSMMGIWFALSAFS 372 (372)
T ss_dssp ---HHHHHTTTT-SSSSTHHHHHHH---
T ss_pred ---HHHHhhHHhhhHHHHHHHHHHhccC
Confidence 9999999999999999999998753
No 240
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=93.64 E-value=3.7 Score=44.13 Aligned_cols=59 Identities=8% Similarity=0.018 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhh
Q 035916 401 SLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYY 460 (506)
Q Consensus 401 s~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~ 460 (506)
|...+...-++.|++|.... ....++++-.|++.|+.++|++.....+|..+++.+...
T Consensus 114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777899999999999 999999999999999999999999999999999998887
No 241
>PTZ00207 hypothetical protein; Provisional
Probab=93.54 E-value=0.33 Score=53.56 Aligned_cols=137 Identities=12% Similarity=0.009 Sum_probs=98.6
Q ss_pred Hhhhc-cChhHH--HHHHHHHHHHHHHhHHHHHHHhhhccCchhH-------H--HHHHHHHHHhhhhhhcccccccccC
Q 035916 22 LTEVW-MISFVH--AAGIVNIFWGTAHVLPLAIRYLVDTTISKYW-------M--ILVSSFAYTAVIKFLFYDYKPECIG 89 (506)
Q Consensus 22 l~~~l-~~~~~~--a~~i~~~~~~~~~~~~llgG~laD~~lGr~~-------t--i~~~~~~~~iG~~~l~~~~~~~~~~ 89 (506)
+.+.+ |++..+ ....++.++.+++++=+.+|++. .++=||+ | +.+... +.++++++++.- |
T Consensus 379 I~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~-p---- 451 (591)
T PTZ00207 379 IYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTL-P---- 451 (591)
T ss_pred HHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHC-C----
Confidence 33567 773323 33378899999999999999998 3344443 3 334444 777888887762 2
Q ss_pred CchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHH-HHH-HHH------
Q 035916 90 EGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILS-IAF-LFI------ 160 (506)
Q Consensus 90 ~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~-~~~-~~i------ 160 (506)
...++++-++++++.|..-+...+...+.|. ++. ...||.-+.+. +|+.+- -.+ +++
T Consensus 452 ---~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~----------g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~ 517 (591)
T PTZ00207 452 ---KAALPLPYFIAAFANGFMAATIALVTRTIFA-KDP----------AKHYNFCFLGSVLSAIFLNRLLYGEWYTQQAD 517 (591)
T ss_pred ---ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cch----------HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2478999999999999999999999999997 443 36689888899 999664 333 554
Q ss_pred ----------hhhhHHHHHHHHHHHHHHH
Q 035916 161 ----------KSWKIKFGILAMFTTVSTL 179 (506)
Q Consensus 161 ----------~g~~~~F~i~~~~~~~~~~ 179 (506)
.+++..|.+.++..+++.+
T Consensus 518 k~~~~~C~G~~C~~~~~~v~~~~~~~g~~ 546 (591)
T PTZ00207 518 KLGQDVCTERVCVVMPLAFLLGLSFLAFI 546 (591)
T ss_pred hCCCCeeCCceeeHhHHHHHHHHHHHHHH
Confidence 4588899887766666655
No 242
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=93.46 E-value=0.0027 Score=67.24 Aligned_cols=147 Identities=10% Similarity=-0.098 Sum_probs=80.8
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccC--CchHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIG--EGQKILLY 97 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~--~~~~~~~~ 97 (506)
.++.+..+.+.. ............++.+++.++.|| +|||+.++.+..+..+..+.+.......... ..+.....
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 353 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIV 353 (451)
T ss_pred cccccccccccc--cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccce
Confidence 334455666655 122223334456677788899999 8999999999998888777665111110000 00111111
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
...+.......+..|....+.+|.++.+. |.......+... +|+++++.+ +++ .+-...|.+-++
T Consensus 354 ~~~l~~~~~~~g~~~~~~~~~~ElfPt~~----------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~ 423 (451)
T PF00083_consen 354 FLALFFAFFSLGWGPLPWIYTAELFPTKV----------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAG 423 (451)
T ss_pred eeeeccccccccccccccccccccccccc----------cccccccccccccccccccccccccccccccccccchhhHH
Confidence 11112222222455666678888885432 345667766667 788777777 665 332344555444
Q ss_pred HHHHHHH
Q 035916 173 FTTVSTL 179 (506)
Q Consensus 173 ~~~~~~~ 179 (506)
.++++.+
T Consensus 424 ~~~i~~i 430 (451)
T PF00083_consen 424 VCLIAII 430 (451)
T ss_pred HHHHHHh
Confidence 4444443
No 243
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=92.84 E-value=0.83 Score=49.06 Aligned_cols=127 Identities=9% Similarity=-0.087 Sum_probs=89.0
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc-ccccC-CchHHHHHHHH
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK-PECIG-EGQKILLYTAL 100 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~-~~~~~-~~~~~~~~~~l 100 (506)
++.+|+++...+.+.........++..+.+.+.+| +|.|+++.++.++..++.....+... ..... ...........
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 35799999999999999888888888888888877 89999999999999988755432211 00000 01122333445
Q ss_pred HHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 101 GLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 101 ~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
.+.+++.|..-.....+..+.-+++. ....|..+.... +|..++..+ +++
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~----------egt~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGC----------ESSVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCc----------eehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777888887554332 246788888777 999998877 666
No 244
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=92.19 E-value=2.4 Score=44.62 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=92.1
Q ss_pred hHHHHHHhhh-ccChhHHHHHHHHHHHHHHH-hHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchH
Q 035916 16 WMMMDYLTEV-WMISFVHAAGIVNIFWGTAH-VLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQK 93 (506)
Q Consensus 16 ~~l~~yl~~~-l~~~~~~a~~i~~~~~~~~~-~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~ 93 (506)
+.++.|+++. .|++..+...-+--...-+| ..-+..+.++|. +|.|..++++.+-..+-..++.... +.
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~--------sv 94 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGT--------SV 94 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHC--------cH
Confidence 6789999987 89998887754444333333 344567889997 8888888888887777766666542 23
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHHHHH------hhhhHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAFLFI------KSWKIK 166 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~~~i------~g~~~~ 166 (506)
..+-+.=++.|+++ ++-.++-+-.|..-|+++ -++.-++---+. +|.++|.+++-+ .+|...
T Consensus 95 ~~mq~~q~~yg~~~----a~evay~sYiys~v~~~~-------yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L 163 (412)
T PF01770_consen 95 LAMQLMQFFYGLAT----AAEVAYYSYIYSVVDKEH-------YQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQL 163 (412)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHheeecCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 33333334444444 445566666666656543 234455555666 777766666222 667777
Q ss_pred HHHHHHHHHHHHHH
Q 035916 167 FGILAMFTTVSTLV 180 (506)
Q Consensus 167 F~i~~~~~~~~~~~ 180 (506)
+.++...+.+++++
T Consensus 164 ~~isl~~~~~a~~~ 177 (412)
T PF01770_consen 164 NYISLASVSLALLI 177 (412)
T ss_pred HHHHHHHHHHHHHH
Confidence 77877777766664
No 245
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=91.58 E-value=1.8 Score=39.33 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=46.5
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhc
Q 035916 47 LPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120 (506)
Q Consensus 47 ~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~d 120 (506)
.+++...+-++ +|.|+++++|.+.+.+=..... - .+...++.+=.+.++|.+.+-.....++.+
T Consensus 53 s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~~-~--------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~ 116 (156)
T PF05978_consen 53 SCLFAPSIVNK-LGPKWSMILGSLGYAIYIASFF-Y--------PNSYTLYPASALLGFGAALLWTAQGTYLTS 116 (156)
T ss_pred HHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH-h--------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence 34455566777 8999999999998875322211 1 135677888889999999988888887774
No 246
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=91.09 E-value=1.4 Score=35.66 Aligned_cols=69 Identities=9% Similarity=-0.023 Sum_probs=54.5
Q ss_pred hchhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccc
Q 035916 13 FVFWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYD 82 (506)
Q Consensus 13 yg~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~ 82 (506)
|..+-+...+.++.++|.++++.+-++...+-.++.++...+.++ ..+++.+..+.+...+..+.++..
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678889999999999999998777777777777777777 566788888888888887777765
No 247
>PRK03612 spermidine synthase; Provisional
Probab=89.47 E-value=3.4 Score=45.13 Aligned_cols=146 Identities=10% Similarity=-0.007 Sum_probs=73.5
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHH-hhhhhhcccccccccCCchHHHHHHHHH
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYT-AVIKFLFYDYKPECIGEGQKILLYTALG 101 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~-iG~~~l~~~~~~~~~~~~~~~~~~~~l~ 101 (506)
...+|-+...-+.+++.|.+..-+++.++|.++++-.-++-.+-++..+.. +...++... .+. .......++..++
T Consensus 42 ~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~-~~~--~~~~~~~~~~~~~ 118 (521)
T PRK03612 42 SYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAA-FAF--QGLSRLLLYVLVL 118 (521)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHH
Confidence 345788888899999999999998988888887552222222222221111 111111111 000 0000111222233
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hhhh-HHHHHHHHHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KSWK-IKFGILAMFT 174 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g~~-~~F~i~~~~~ 174 (506)
+.++-.|+.-|-+..+..+.. .+ +..+..+.-|... +|+.+|.++ +++ .|-. ..+.++.+.+
T Consensus 119 ~~~~l~G~~~Pl~~~~~~~~~----~~-------~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~ 187 (521)
T PRK03612 119 LIGLLIGMEIPLLMRILQRIR----DQ-------HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNL 187 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----cc-------chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 445555555555544443211 10 1123356777788 888888887 666 5543 3444444445
Q ss_pred HHHHHHHH
Q 035916 175 TVSTLVFL 182 (506)
Q Consensus 175 ~~~~~~f~ 182 (506)
+++++...
T Consensus 188 ~~a~~~~~ 195 (521)
T PRK03612 188 LAALVFLW 195 (521)
T ss_pred HHHHHHHH
Confidence 55544433
No 248
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=88.78 E-value=2.4 Score=45.46 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=95.2
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYT 98 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~ 98 (506)
.+|+..++++++.+.+...+..+...++..+++.-+=-+.+|-++.+.+|.....++....+++. +.+..+.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--------~~w~~~~ 336 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--------ETWMMFA 336 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc--------cchhhhH
Confidence 35667789999999999999999999999998884444458999999999999999998888873 4466666
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+.++. ...+...|...++...+.+.++ +...+.+....- +...+++.+ +-+
T Consensus 337 ~~v~~-~~~~~~~pa~~s~~s~~v~~~e----------~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 337 AGVVV-ALAGIVFPAIRAFASILVSPEE----------QGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred HHHHH-HhhcchhHHHHhHHHhhccccc----------ccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 55544 4456888999999998774433 246788888887 888887777 444
No 249
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=86.68 E-value=7.6 Score=41.00 Aligned_cols=125 Identities=7% Similarity=0.032 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccc
Q 035916 33 AAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMG 112 (506)
Q Consensus 33 a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~ 112 (506)
-+.+.+.-...-.+.=.+..++-+| +|.|+.++++..++.+=.+..+++. +.+.+...-.+=++-.+..-.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~--------~~~~i~~~klLH~~e~~l~lv 331 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFAT--------NPWVISLIKLLHALEFPLLLV 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT----------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhc--------chHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455577888888 8999999999999888766666653 345566666777777777777
Q ss_pred cchhhhhcccccCCccccccccccchhHHHHH-HHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHH
Q 035916 113 SIDRFIADQATNFREEEFSMSFRPQLIIFSFW-GLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTV 176 (506)
Q Consensus 113 ~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~-y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~ 176 (506)
.+--++++++|++- ....+... -.+. +|..+-+.. +++ .|++..|.+-+..++.
T Consensus 332 a~fkYI~~~fd~rl----------sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~ 391 (412)
T PF01306_consen 332 AAFKYITAHFDKRL----------SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLP 391 (412)
T ss_dssp HHHHHHHHHS-GGG----------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHhH----------HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHH
Confidence 77889998885422 12344443 2455 777666666 777 8898888765544443
No 250
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=85.78 E-value=0.52 Score=49.76 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=92.3
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhcc---CchhHHHHH-HHHHHHhhhhhhcccccc---ccc-
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTT---ISKYWMILV-SSFAYTAVIKFLFYDYKP---ECI- 88 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~---lGr~~ti~~-~~~~~~iG~~~l~~~~~~---~~~- 88 (506)
.++.|+ +.+|.+..-.+.+-..-=....+..++-|..+||. +||||-.+. +.....++.+++..++-- -++
T Consensus 54 y~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~ 132 (498)
T KOG0637|consen 54 YLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDN 132 (498)
T ss_pred cccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCC
Confidence 345566 46788877777666665566677778889999974 788887655 445566676655544321 011
Q ss_pred -----CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 89 -----GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 89 -----~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
......++.++..+.=+.+-..+...-++.+|...+++.+ + ++.++|-..+ +|..+|..+ +|.
T Consensus 133 ~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~--------~-~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 133 ERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK--------T-RANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred cccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh--------h-ccchhHHHHHHhcceeeeeccccc
Confidence 1233456667777777777788888899999988665432 1 2788888899 999999988 675
No 251
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.80 E-value=7.6 Score=43.81 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHH----HHHHHhhhhhhhccc-ccc----cCCcCCC
Q 035916 404 WLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGV----GIIGSTLSVYYAGII-SER----IGKHNWF 474 (506)
Q Consensus 404 wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~ai----G~~l~~~l~~~~~~~-t~~----~~~~~w~ 474 (506)
.++...++.|+||.-..+.|..++-+.+-++-.++..|+.+....+ |..+|+++..++-.. .+. +.++.|+
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWI 318 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWI 318 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchh
Confidence 3455668999999999999999999999999888999988877655 455555555554333 111 1223444
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhhh
Q 035916 475 QDTLNLSRLDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 475 ~~~ln~~~l~~~~~lla~l~~v~~~~f~~ 503 (506)
|.-+--|.+.++++++.-+.+.+
T Consensus 319 ------GAWWlGFLi~g~~~~~~a~p~f~ 341 (735)
T KOG3626|consen 319 ------GAWWLGFLICGALLLFSAVPLFF 341 (735)
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233445556666555555444
No 252
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=84.70 E-value=13 Score=40.28 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=80.2
Q ss_pred hhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccch
Q 035916 322 LLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMS 401 (506)
Q Consensus 322 ~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is 401 (506)
+++.+...+...+..++..++-..+. ||.. +-++.++..++.++.+.. -+
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~G---Rk~~-----l~~~~~~~~iG~ii~~~a----------------------~~ 141 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIG---RKKT-----LLLAVVLFLIGAIIIALA----------------------PS 141 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHH-----HHHHHHHHHHHHHHHHHh----------------------hh
Confidence 57777777777788888777764444 4332 555665555555444332 26
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHh
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGST 455 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~ 455 (506)
+.+++..-++.|+|=-+.+....-+...-||++.||...+...+...+|-.++-
T Consensus 142 ~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~ 195 (513)
T KOG0254|consen 142 WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGY 195 (513)
T ss_pred HHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999999999999999999999999988883
No 253
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=84.32 E-value=24 Score=38.05 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=81.4
Q ss_pred hhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccch
Q 035916 322 LLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMS 401 (506)
Q Consensus 322 ~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is 401 (506)
.+.....++...+..|++...- .|......++-.|.++++++-++...+|.. ++. +
T Consensus 74 G~viaa~slg~~i~~liF~~Ws-------~k~~~~k~Pli~s~ii~~~g~llY~~l~~~----------------~~~-~ 129 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIWS-------NKTGSVKKPLIVSFLIAIIGNLLYLALAYV----------------PNG-V 129 (488)
T ss_pred hHHHHHHHHHHHhcchhhcccc-------cccCCcccCHHHHHHHHHHHHHHHHHHHhc----------------ccc-h
Confidence 3455668888888888888654 333322223888999988888777666521 111 6
Q ss_pred HHHHHHHHHHHHHH-HHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCC-CCCC
Q 035916 402 LFWLLPQFLLLGAA-DGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQ-DTLN 479 (506)
Q Consensus 402 ~~wli~~y~l~~ig-E~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~-~~ln 479 (506)
.+++...+++.|+| -.+..--.+--..+-.+.++|.++.. .....+|..+|+.+......+-+ .+-.|++ ...|
T Consensus 130 ~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~--~~~~vlg~ilGp~~q~~f~~Lg~--~G~~i~~~~~~n 205 (488)
T KOG2325|consen 130 KYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAAT--SGGFVLGIILGPTIQLAFTPLGE--KGFMILPGLIFN 205 (488)
T ss_pred HHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHh--hhHHHHHHHHhHHHHHHHhhhcC--CceEEcCcceEE
Confidence 78899999999998 44443333333333455555555444 44444444554444333322221 1123555 3455
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 035916 480 LSRLDNYYWLLAALTAANLA 499 (506)
Q Consensus 480 ~~~l~~~~~lla~l~~v~~~ 499 (506)
.....-++. +.+.+++++
T Consensus 206 ~YTap~w~m--~i~~i~~~v 223 (488)
T KOG2325|consen 206 MYTAPAWLM--AILWIIYIV 223 (488)
T ss_pred ecchHHHHH--HHHHHHHHH
Confidence 554444433 333344333
No 254
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=83.78 E-value=2.9 Score=44.47 Aligned_cols=128 Identities=18% Similarity=0.118 Sum_probs=75.7
Q ss_pred HHHHh-HHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhc
Q 035916 42 GTAHV-LPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIAD 120 (506)
Q Consensus 42 ~~~~~-~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~d 120 (506)
.+.++ +..++.++.|+ +||++.-+.|.+++.+-.+.++..-... . +...+ ..+.-+..-.+-+-||...++--
T Consensus 358 ~~~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~---~-~~~Gf-~v~y~l~~ff~NFGPn~ttfivp 431 (538)
T KOG0252|consen 358 VCSTVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQL---E-NTIGF-VVLYSLTFFFGNFGPNATTFIVP 431 (538)
T ss_pred HHccCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCcccc---c-ccCce-eehHHHHHHHHhcCCCceeEEee
Confidence 33444 56678889999 8999999999999988776766553210 0 11111 11112222233444666666541
Q ss_pred ccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--------hhhhHHHHHHHHHHHHHHHHHHh
Q 035916 121 QATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--------KSWKIKFGILAMFTTVSTLVFLS 183 (506)
Q Consensus 121 q~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--------~g~~~~F~i~~~~~~~~~~~f~~ 183 (506)
.|..|.. -|+.+..+--.+- .|+.++... .++ .|.+..|.+.+.+++++.++.++
T Consensus 432 --aE~FPar------vR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l 496 (538)
T KOG0252|consen 432 --AEIFPAR------VRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLL 496 (538)
T ss_pred --hhhchHH------HhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEE
Confidence 0112321 2334444444444 889888877 665 57888899988888888775433
No 255
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=82.92 E-value=0.28 Score=53.75 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhh
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLS 457 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l 457 (506)
.++++...+++|+|..-.++.|..|+-+.++++..++.+|+.+....+|-.+|-.+
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~l 196 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLL 196 (539)
T ss_dssp -----------SSS------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHH
Confidence 35566777999999999999999999999999999999999999887766555333
No 256
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=82.09 E-value=15 Score=39.83 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhhhHHHhhhccChh--hHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcchhHHHH
Q 035916 410 LLLGAADGFYEKGIDMFFSDQFPRM--IFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYY 487 (506)
Q Consensus 410 ~l~~igE~l~~~~~lef~~~~aP~~--mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~l~~~~ 487 (506)
.+..+|--+..+....+..++-|++ .|....++++....+|..+++.+....... .+| .+-|
T Consensus 108 ~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~------~Gw----------~~~F 171 (493)
T PRK15462 108 AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE------YSW----------AMGF 171 (493)
T ss_pred HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh------hCh----------HHHH
Confidence 3444555555566667778888875 688889999999999999998876654321 123 2334
Q ss_pred HHHHHHHHHHHHhhhh
Q 035916 488 WLLAALTAANLAVLII 503 (506)
Q Consensus 488 ~lla~l~~v~~~~f~~ 503 (506)
.+.++.+++.++.|++
T Consensus 172 ~iaaigm~l~li~~~~ 187 (493)
T PRK15462 172 GLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555566666666654
No 257
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=79.83 E-value=20 Score=32.48 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhh
Q 035916 401 SLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYA 461 (506)
Q Consensus 401 s~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~ 461 (506)
+.+.++|.-++.|+++.+..+..-.+..+.+.++.+++-.|+++.....+...|+...-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566889999999999999999999999999999999999999999998888888765554
No 258
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=76.61 E-value=64 Score=35.89 Aligned_cols=118 Identities=14% Similarity=0.111 Sum_probs=65.2
Q ss_pred hcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhc
Q 035916 309 INGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSH 388 (506)
Q Consensus 309 ~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~ 388 (506)
++.++| + .-...|+...+.+..-+..|++.++-.-+. ||.. +-.|.++..++.++.+-.+
T Consensus 70 I~~diG-~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfG---Rr~~-----~i~g~~l~vvG~Iv~atA~---------- 129 (599)
T PF06609_consen 70 INADIG-G-SDNWSWFSTAWTLASAVSFPFVGRLSDLFG---RRYF-----FIIGSLLGVVGSIVCATAQ---------- 129 (599)
T ss_pred HHHhcC-C-CccchHHHHHHHHHHHHHHHhhHHHHHHhc---chHH-----HHHHHHHHHhHHHHhhcCC----------
Confidence 455666 2 223356667777777777888887775444 4432 5667777777666554321
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhh
Q 035916 389 GLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVY 459 (506)
Q Consensus 389 g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~ 459 (506)
|+--++--.++.|+|--..... ...+.+..|.+-|....++.....-+....|+.+..
T Consensus 130 ------------~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 130 ------------NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred ------------cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 1111333345555554333332 233567778888877766555444444444444433
No 259
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=75.37 E-value=11 Score=29.72 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=42.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHhcCcceeecC
Q 035916 140 IFSFWGLSL-VPNILSIAFLFI-KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRK 192 (506)
Q Consensus 140 ~f~~~y~~i-iG~~i~~~~~~i-~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~ 192 (506)
.-.++...+ +++++|.+.+|+ -+.+..+.+-+++.++++++.+.-.+.|+++|
T Consensus 9 ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p 63 (76)
T PF06645_consen 9 AEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLLVVVPPWPFYNRHP 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeCCcHhhcCCc
Confidence 345666788 999999888888 78888888888888888888888888776443
No 260
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=71.15 E-value=72 Score=33.83 Aligned_cols=50 Identities=14% Similarity=-0.077 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhh
Q 035916 409 FLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYY 460 (506)
Q Consensus 409 y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~ 460 (506)
-+-..+.|+.......|..-+ -|++ +|-.++..+...++|+.++..+.+.
T Consensus 97 ~~g~a~~DV~aDa~vvE~~~~-~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 97 SFGYAFADVAADALVVELARR-EPES-RGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred HHHHHHHHHhhhHHHHHHhhc-CCch-hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344455555565566666544 3555 8899999999999999988776544
No 261
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=69.04 E-value=1.7e+02 Score=31.53 Aligned_cols=161 Identities=11% Similarity=0.088 Sum_probs=84.1
Q ss_pred chhhhhhhhchhHHH-HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCc-----------hh-----HHHHH
Q 035916 5 SWSDVFVAFVFWMMM-DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTIS-----------KY-----WMILV 67 (506)
Q Consensus 5 ~~~~~fs~yg~~~l~-~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lG-----------r~-----~ti~~ 67 (506)
+|+|-|+-..++.+. .|..+ -.+..||.-.+..+..++.++.++||.+... +. .. ..+.+
T Consensus 136 v~~elw~~~vvS~lFW~fand--i~t~~qakRfy~l~~~ganlg~i~sg~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i 212 (472)
T TIGR00769 136 VMAELWGSVVLSLLFWGFANQ--ITTIDEAKRFYALFGLGANVALIFSGRTIKY-FSKLRASLGPGVDGWHVSLKNLMVI 212 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccChHHHHHHHHHHH
Confidence 355555544444222 23333 2678899999999999999999999977644 33 11 11111
Q ss_pred HHHHHHhhhhhh-cc----cccccc-----c-----C-----------CchHHHHHHHHHH--HHhhcccccccchhhhh
Q 035916 68 SSFAYTAVIKFL-FY----DYKPEC-----I-----G-----------EGQKILLYTALGL--IAFGISGHMGSIDRFIA 119 (506)
Q Consensus 68 ~~~~~~iG~~~l-~~----~~~~~~-----~-----~-----------~~~~~~~~~~l~l--~~~G~g~~k~~~~~~~~ 119 (506)
......+...+- -+ ...|.. . + -.+.-+..+++.+ .++..-.+...-...+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~ 292 (472)
T TIGR00769 213 VICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLK 292 (472)
T ss_pred HHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111110000 00 000110 0 0 0122233333333 34444455555556667
Q ss_pred cccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHHHHH
Q 035916 120 DQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFTTVS 177 (506)
Q Consensus 120 dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~~~~ 177 (506)
+++++ ++ ++.+++.-+.... +-.++.... +.+ .||..+-.+..+.+++.
T Consensus 293 ~~~p~--~~-------~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit 346 (472)
T TIGR00769 293 AQYPS--PN-------EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT 346 (472)
T ss_pred HHCCC--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 77743 33 3458888877666 666555555 555 99998877766555553
No 262
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.48 E-value=66 Score=34.55 Aligned_cols=124 Identities=15% Similarity=0.044 Sum_probs=70.6
Q ss_pred HhhhccChhHHHHHHHHHHHH-HHHhHHHHHHHhh---hccCchhHHHHHHHHHHHhhhhhhccccccccc---------
Q 035916 22 LTEVWMISFVHAAGIVNIFWG-TAHVLPLAIRYLV---DTTISKYWMILVSSFAYTAVIKFLFYDYKPECI--------- 88 (506)
Q Consensus 22 l~~~l~~~~~~a~~i~~~~~~-~~~~~~llgG~la---D~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~--------- 88 (506)
.+...+.+...--.+.+...+ ..++..+.-+.+. ++ +||+.++.++..++.++.++.-++-..+..
T Consensus 269 ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~-fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~ 347 (461)
T KOG3098|consen 269 FTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRG-FGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPL 347 (461)
T ss_pred hhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-cccCcchhHHHHHHHHHHHHHhccccccCCCCCCccccc
Confidence 333444444443333333332 2233344444555 44 689999999999999887666655331110
Q ss_pred -CCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH
Q 035916 89 -GEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF 157 (506)
Q Consensus 89 -~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~ 157 (506)
...+.....+-=.+.++|-+......+..+++.++++. ...|+++-+-- +++.++...
T Consensus 348 ~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~-----------~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 348 LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDR-----------AQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCch-----------HHHHHHHHHHHHHHHHHHhhh
Confidence 01122222223356888999999999999999883322 24566666555 666555444
No 263
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=66.44 E-value=35 Score=36.42 Aligned_cols=90 Identities=18% Similarity=0.007 Sum_probs=55.8
Q ss_pred ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhh-hhhcccccccccCCchHHHHHHHHHHHH
Q 035916 26 WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVI-KFLFYDYKPECIGEGQKILLYTALGLIA 104 (506)
Q Consensus 26 l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~-~~l~~~~~~~~~~~~~~~~~~~~l~l~~ 104 (506)
-|++.+.++.+-..-...+.++.++.|.++||.=.-+.++++......++. .+....-.+ ..+.. ++.-..+.+
T Consensus 296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~----~~~vi-v~~t~~~~g 370 (480)
T KOG2563|consen 296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFL----GDSVI-VFTTCGLLG 370 (480)
T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccC----CceEe-hhhhHHHHH
Confidence 478888999999999999999999999999995444556666666666663 222222212 12333 343444444
Q ss_pred hhcccccccchhhhhc
Q 035916 105 FGISGHMGSIDRFIAD 120 (506)
Q Consensus 105 ~G~g~~k~~~~~~~~d 120 (506)
...-+.-|.-.-++.+
T Consensus 371 ~~~~~~~Pig~ElgvE 386 (480)
T KOG2563|consen 371 FFGTGYLPIGFELGVE 386 (480)
T ss_pred HhhcCCCCcceeeeee
Confidence 4444555555555543
No 264
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=65.97 E-value=8.4 Score=41.85 Aligned_cols=123 Identities=10% Similarity=-0.020 Sum_probs=83.4
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCC
Q 035916 47 LPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFR 126 (506)
Q Consensus 47 ~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~ 126 (506)
.-++.+++-.+ +|+-+.+.++.....+=.+.++.. .++|.....=++.++..+.+-.++.+++.+.-+++-
T Consensus 422 ~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L--------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 422 FYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYL--------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred HHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHh--------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 44566788887 899999999988888776666655 345655556678899999999999999998665433
Q ss_pred ccccccccccchhHHHHHHHHH---HHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHhcCc
Q 035916 127 EEEFSMSFRPQLIIFSFWGLSL---VPNILSIAF-LFIKSWKIKFGILAMFTTVSTLVFLSGSS 186 (506)
Q Consensus 127 ~~~~~~~~~~~~~~f~~~y~~i---iG~~i~~~~-~~i~g~~~~F~i~~~~~~~~~~~f~~~~~ 186 (506)
++ ..+..+.--+... +|++||-.+ .+ +|=+.-|-+.++..++.++.+..-++
T Consensus 493 ---~a----t~Q~l~~g~f~GlG~g~GslIGG~~v~~-fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 493 ---RA----TAQGLLQGIFHGLGKGLGSLIGGFVVER-FGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred ---hH----HHHHHHHHHhcccCcchhhhhhhhhhee-ehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23 4556665555454 677776655 44 45555566666655555555555443
No 265
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=64.85 E-value=34 Score=34.87 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH-HHHHHhhhhhhHHHhhhccChhh
Q 035916 402 LFWLLPQFLLL-GAADGFYEKGIDMFFSDQFPRMI 435 (506)
Q Consensus 402 ~~wli~~y~l~-~igE~l~~~~~lef~~~~aP~~m 435 (506)
+.-+.+.++.+ ++.|-.+......|..+..|+-.
T Consensus 186 ~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 186 IPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 33466777786 99999999999999999998875
No 266
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=61.49 E-value=56 Score=30.84 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=54.5
Q ss_pred hhhHHHHhHhhhhhhhhhhccccccccccccccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHH
Q 035916 326 LFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFW 404 (506)
Q Consensus 326 ~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~w 404 (506)
-.|.+.+.+..++..+..++.. +|+ .++. +..+++...++...++..-.-........+ +.+.......
T Consensus 106 G~N~l~m~~~~~~~~~~~~~~l---~~~--~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-----~~~~~~~~~~ 175 (205)
T PF01891_consen 106 GANALNMGVPPVLVSYLLFRLL---RRK--FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-----DYPWMALVQA 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----cccHHHHHHH
Confidence 3466666666667777676655 444 2222 334444334444333322211111111100 0122344455
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHhhhccCh
Q 035916 405 LLPQFLLLGAADGFYEKGIDMFFSDQFPR 433 (506)
Q Consensus 405 li~~y~l~~igE~l~~~~~lef~~~~aP~ 433 (506)
..+.++++++.|.+++-....+..+.-|+
T Consensus 176 ~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 176 YLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77889999999999999999998888875
No 267
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=55.67 E-value=51 Score=34.61 Aligned_cols=120 Identities=10% Similarity=0.070 Sum_probs=77.7
Q ss_pred hhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHH-HHhhhhhhcccccccccCCchHHHHHHHHH
Q 035916 23 TEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFA-YTAVIKFLFYDYKPECIGEGQKILLYTALG 101 (506)
Q Consensus 23 ~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~-~~iG~~~l~~~~~~~~~~~~~~~~~~~~l~ 101 (506)
++++|++..+.+.+......+.-+..+.-+-..|+..|.-++...-... +.--.+++.... ....++.+..
T Consensus 289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--------~~~~l~~~s~ 360 (451)
T KOG2615|consen 289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--------TPVVLYLGST 360 (451)
T ss_pred cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--------cchhhhHHHH
Confidence 4689999999998877766555555555555667765554454443333 333444444443 2367889999
Q ss_pred HHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH
Q 035916 102 LIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI 160 (506)
Q Consensus 102 l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i 160 (506)
+-++.++...||+..++..-.+. + +|...-..+--.. ++=++||++ +++
T Consensus 361 l~sf~~A~~vt~Lt~Lv~~~~~~-~---------qrG~~~Gi~~Sl~alaRaiGPlv~g~i 411 (451)
T KOG2615|consen 361 LKSFSTASVVTCLTSLVHKYGPQ-S---------QRGTLNGIFRSLGALARAIGPLVSGVI 411 (451)
T ss_pred HHHHHHHHhhHHHHHHHHhcCCc-c---------cchHHHHHHHHHHHHHHHhhhhhhhee
Confidence 99999999999999998854422 2 3444445444334 666788888 566
No 268
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=55.45 E-value=2.8e+02 Score=29.31 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhh
Q 035916 401 SLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYA 461 (506)
Q Consensus 401 s~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~ 461 (506)
|+|......+..|+-.-.+++....-+.++.|++.|-+.||.-..+-++|..+++.+.-..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4555556678889999999999999999999999999999999999999999999875443
No 269
>PF14007 YtpI: YtpI-like protein
Probab=50.23 E-value=29 Score=28.25 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=36.4
Q ss_pred HHH-HHHHHHHHH-H-HH-hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCC
Q 035916 146 LSL-VPNILSIAF-L-FI-KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQ 194 (506)
Q Consensus 146 ~~i-iG~~i~~~~-~-~i-~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~ 194 (506)
..+ +|.++.... . +. .+=...+.++++.+++++.....|.|.|+|..|.
T Consensus 35 a~ialG~fl~~fgiNQ~~~~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p~ 87 (89)
T PF14007_consen 35 ANIALGIFLILFGINQMFLFGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRPL 87 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Confidence 456 788766555 2 22 5556678899999999999999998888877653
No 270
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=48.20 E-value=2.2e+02 Score=30.51 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCC
Q 035916 400 MSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLN 479 (506)
Q Consensus 400 is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln 479 (506)
-|..+.+..-++.|++..-....+.-.....-+++.|+..+.+ ....-.+..++..+.... + ++|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~---~-----~~W------ 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYI---T-----RDW------ 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHH---H-----hhH------
Confidence 3667777788999999999999999999999999999999999 444444444444333332 2 245
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q 035916 480 LSRLDNYYWLLAALTAANLAV 500 (506)
Q Consensus 480 ~~~l~~~~~lla~l~~v~~~~ 500 (506)
.++++..+...++.++.
T Consensus 234 ----r~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 234 ----RWLFWIISIPSGLFLLL 250 (521)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 34666666666666555
No 271
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=47.72 E-value=90 Score=33.26 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=73.9
Q ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhccccc--cccc-CCchH
Q 035916 17 MMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYK--PECI-GEGQK 93 (506)
Q Consensus 17 ~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~--~~~~-~~~~~ 93 (506)
.++-|+..+ |++...-+..-+.-......+.++..++-+| +|--|+=.++.........+ +..+. |... +..+.
T Consensus 280 lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~-~v~~~~~~~~~~~~~s~ 356 (432)
T PF06963_consen 280 LMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLAL-CVVSFWAPGSPFSSISA 356 (432)
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHH-HHHHHhcCCCCchhhHH
Confidence 356677776 8999988888888888888899999999988 79999999988866543222 22111 1110 12355
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccc
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQAT 123 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~ 123 (506)
..+..|..+-=+|-=++.-++..+.-+..+
T Consensus 357 ~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~ 386 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDLAVTQIMQENVP 386 (432)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcccCC
Confidence 667778888888888888888777766443
No 272
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=47.49 E-value=4e+02 Score=28.79 Aligned_cols=50 Identities=14% Similarity=-0.036 Sum_probs=41.5
Q ss_pred HHHHhhhhhh----HHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcc
Q 035916 414 AADGFYEKGI----DMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGI 463 (506)
Q Consensus 414 igE~l~~~~~----lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~ 463 (506)
.+|++.+... -+|+.+....+.-.+.-++..+..++|..+|+.++....+
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677655544 5899999999999999999999999999999988777554
No 273
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=46.37 E-value=1.1e+02 Score=31.59 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=61.5
Q ss_pred hhHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 15 FWMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 15 ~~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
..||...... ++.....+.+.-...-.+.+.| .+ =|++|-|+|+.++...|..-. ++.. ....-
T Consensus 48 l~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~----~~-Ir~~g~K~tm~lav~~Y~lyi-----A~Nl----~pr~~ 111 (390)
T KOG3097|consen 48 LQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMP----LL-IRFLGTKWTMVLAVFPYALYI-----AANL----EPRYE 111 (390)
T ss_pred HHHHHHHHhc--CcccchhhhhhHHHHHHHHHHH----HH-HHHHhhHHHHHHHHHHHHHHH-----Hhhc----chhHH
Confidence 3445444433 4444445555555554444454 33 466999999999988887532 2110 00112
Q ss_pred HHHHHHHHHHhhccc---ccccchhhhhcccccCCcc--ccccccccchhHHHHHHHHH-HHHHHHH
Q 035916 95 LLYTALGLIAFGISG---HMGSIDRFIADQATNFREE--EFSMSFRPQLIIFSFWGLSL-VPNILSI 155 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~---~k~~~~~~~~dq~~~~~~~--~~~~~~~~~~~~f~~~y~~i-iG~~i~~ 155 (506)
.+..+=...+.|+|. -|.+-.+-++|-+.+..-+ +...|++--..+|-+|+... +|.+++.
T Consensus 112 tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~iss 178 (390)
T KOG3097|consen 112 TLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISS 178 (390)
T ss_pred hhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHH
Confidence 222233344555543 3555555666666554421 11113334445555555554 4444433
No 274
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=45.43 E-value=1.2e+02 Score=32.57 Aligned_cols=161 Identities=13% Similarity=-0.005 Sum_probs=87.8
Q ss_pred hhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChhh---hhhhhHHHHhHhhhhhhhhhhcccccccc
Q 035916 276 KCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPLL---LLLFYYISKGRFTAFYEGFVGHLTSVGWN 352 (506)
Q Consensus 276 k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~~---l~~~n~i~iivl~Pl~~~~~~pl~~~~~r 352 (506)
.+++++.-+....-+.|....|..|-+.++. | +|-+| .+...|+.-++.+|+....-...- -|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-------G----vphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~---sr 97 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-------G----VPHKWSSIIWLCGPLSGLLVQPLVGSASDRCT---SR 97 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-------C----CCcccccccccccccccceecccccccccccc---cc
Confidence 4556666677778888998888777766542 2 33333 456778888888888887775544 33
Q ss_pred ccccccc-hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC-CccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhc
Q 035916 353 AVAHVVG-FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDE-KIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQ 430 (506)
Q Consensus 353 ~~~~~~~-ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~-~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~ 430 (506)
++ +.++ |..|-+...+++.......-. .. -+-|++.. .-+..+--.+.-+.++=++-=.+--..=++..+.
T Consensus 98 ~G-RRRPfI~~~s~~i~~~l~Lig~aaDi----g~--~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl 170 (498)
T KOG0637|consen 98 YG-RRRPFILAGSLLIAVSLFLIGYAADI----GL--LLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADL 170 (498)
T ss_pred cc-cccchHHHhhHHHHHHHhhhhhHhhh----hH--HhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHh
Confidence 32 2223 777777777766544433211 10 01122111 1122333223333333333222222233444444
Q ss_pred cChh-hHHHHHHHHHHHhHHHHHHHhhh
Q 035916 431 FPRM-IFRYLKYIFVATMGVGIIGSTLS 457 (506)
Q Consensus 431 aP~~-mks~~~gl~~l~~aiG~~l~~~l 457 (506)
+-.. .+-+..+.+-+..|+||.+|-.+
T Consensus 171 ~~~d~~~~~Ans~f~~f~avGnvLGY~~ 198 (498)
T KOG0637|consen 171 ARGDAKKTRANSVFSFFMAVGNVLGYAL 198 (498)
T ss_pred ccChhhhhccchhHHHHHHhcceeeeec
Confidence 4333 33339999999999999998544
No 275
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=37.68 E-value=3.2e+02 Score=29.06 Aligned_cols=92 Identities=7% Similarity=0.022 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCc
Q 035916 401 SLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNL 480 (506)
Q Consensus 401 s~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~ 480 (506)
..+..+..-++.+++..+.-.+.+.++..--|+-+++.+. ..|+++.+++.+ .++.++... ++ ++.+.
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~fp~~~~~a~~~-----G~g~aGv~~s~~-~ii~~a~~~---~~---~~~~~ 172 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGVFPSTYSSAVMS-----GQGLAGVLTSLA-MILVKASGN---DS---HGLKK 172 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcccCCHHHHHHHHh-----cchhHHHHHHHH-HHHHHHhcC---Cc---cchhh
Confidence 3444455667788898888888888887666554444443 355555554433 222222110 00 01333
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhc
Q 035916 481 SRLDNYYWLLAALTAANLAVLIIAA 505 (506)
Q Consensus 481 ~~l~~~~~lla~l~~v~~~~f~~~a 505 (506)
+. -.||.+-+++.+++++.|...-
T Consensus 173 ~a-~~YF~~a~~v~l~~i~~~~~l~ 196 (437)
T TIGR00939 173 SA-LGYFGTPCVVQLICIVCYLLLP 196 (437)
T ss_pred hh-hhHHHHHHHHHHHHHHHHHHHh
Confidence 33 3455666777888888887653
No 276
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=37.62 E-value=2e+02 Score=27.74 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHH-HHHHHhhhhhhHHHhhhccChhhH
Q 035916 400 MSLFWLLPQFLLL-GAADGFYEKGIDMFFSDQFPRMIF 436 (506)
Q Consensus 400 is~~wli~~y~l~-~igE~l~~~~~lef~~~~aP~~mk 436 (506)
.+..-+.+.++.+ ++.|-++.....+|+.+..|+.+-
T Consensus 181 ~~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l 218 (230)
T PRK11909 181 VSIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLL 218 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHh
Confidence 3445567778887 999999999999999999666543
No 277
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=36.74 E-value=2.9e+02 Score=27.03 Aligned_cols=55 Identities=15% Similarity=0.159 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhh
Q 035916 401 SLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTL 456 (506)
Q Consensus 401 s~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~ 456 (506)
+.|.+.....+.+.|..+.....+--..+..|+ .||.+.|+--...+++..+=+.
T Consensus 95 ~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~ 149 (250)
T PF06813_consen 95 PVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQ 149 (250)
T ss_pred chHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHH
Confidence 444344445566677777777777777899996 6999999998888887776443
No 278
>PRK08319 cobalt transport protein CbiM; Validated
Probab=36.19 E-value=1.7e+02 Score=28.09 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHhhhccChhhHH
Q 035916 406 LPQFLLLGAADGFYEKGIDMFFSDQFPRMIFR 437 (506)
Q Consensus 406 i~~y~l~~igE~l~~~~~lef~~~~aP~~mks 437 (506)
.++++.+++.|.++.-....+..+.-|+-.+.
T Consensus 183 ~~~~l~l~~~Eg~itg~~v~~l~~~rP~~l~t 214 (224)
T PRK08319 183 AVTQIPLAIAEGLLTVLIFNYLTKYRPDLLVK 214 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHhh
Confidence 46667899999999999999999999987653
No 279
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.65 E-value=1.2e+02 Score=24.88 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHhcCcceee
Q 035916 141 FSFWGLSL-VPNILSIAFLFI-KSWKIKFGILAMFTTVSTLVFLSGSSSYRR 190 (506)
Q Consensus 141 f~~~y~~i-iG~~i~~~~~~i-~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~ 190 (506)
=.|+-..+ +|+.+|.+.++. -.+.+.-.+-.+..++++++-+.-.++|++
T Consensus 25 Er~~q~ilti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 25 ERFQQLILTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhc
Confidence 34555677 999988887655 223333333334444455555555666654
No 280
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=34.62 E-value=5.9e+02 Score=27.09 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=51.1
Q ss_pred ccchHH-HHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHH-HHHHHhhhhhhhccccc
Q 035916 398 IPMSLF-WLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGV-GIIGSTLSVYYAGIISE 466 (506)
Q Consensus 398 ~~is~~-wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~ai-G~~l~~~l~~~~~~~t~ 466 (506)
.+.... ..+-+|.+.+..---..++++.|.++.||+...|..|.+..-...+ |+..+.....+++..|.
T Consensus 364 ~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 364 FPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred eeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 344333 4556788888888888999999999999999999999987665555 45556666666665553
No 281
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=34.46 E-value=6.3e+02 Score=27.39 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=28.0
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCch
Q 035916 28 ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISK 61 (506)
Q Consensus 28 ~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr 61 (506)
.+..||.-.+..+..++.++.+++|.+.-. +.+
T Consensus 173 tt~~eAKRfYpl~g~ganigli~sG~~~~~-~~~ 205 (491)
T PF03219_consen 173 TTVEEAKRFYPLFGLGANIGLIFSGQLTSY-FSS 205 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 678899999999999999999999987754 454
No 282
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=33.57 E-value=3.3e+02 Score=29.54 Aligned_cols=144 Identities=11% Similarity=-0.034 Sum_probs=85.4
Q ss_pred hHHHHHHhhhcc-------ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchh-------HHHHHHHHHHHhhhhhhcc
Q 035916 16 WMMMDYLTEVWM-------ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKY-------WMILVSSFAYTAVIKFLFY 81 (506)
Q Consensus 16 ~~l~~yl~~~l~-------~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~-------~ti~~~~~~~~iG~~~l~~ 81 (506)
+.+..|-.+..+ .+++.-.++...+ ..++.++-.++--+ +|++ .-.-+|..++..|.+++..
T Consensus 305 ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~---Iii~~pI~a~l~~~-l~~~~~~ps~~~KFalGl~l~g~~fl~l~~ 380 (498)
T COG3104 305 SSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF---IILFSPILAALWTK-LGRGNKQPSTPIKFALGLILAGLGFLILLL 380 (498)
T ss_pred chHHHHHHHhhcccccceecCHHHHHhhCHHH---HHHHHHHHHHHHhH-hhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 556777654322 3333333333333 33444444555444 3333 2345577777777777766
Q ss_pred cccccc--cCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-
Q 035916 82 DYKPEC--IGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF- 157 (506)
Q Consensus 82 ~~~~~~--~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~- 157 (506)
.....- ....+.+.+..+.++..+|.=++.|.-.++....- |+. -.+...+.|+.+. .|..++..+
T Consensus 381 ~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~la----P~~------~~s~~ma~wfLt~a~~~~l~g~va 450 (498)
T COG3104 381 AGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLA----PPA------LKSFIMAMWFLTVAAGQTLGGQVA 450 (498)
T ss_pred HHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhC----hHH------HHHHHHHHHHHHHHHHHHhhceec
Confidence 522111 12346677888999999999888888888887533 321 3456778888888 998888766
Q ss_pred H-------HH--hhhhHHHHHHHHH
Q 035916 158 L-------FI--KSWKIKFGILAMF 173 (506)
Q Consensus 158 ~-------~i--~g~~~~F~i~~~~ 173 (506)
+ .. ......|...++.
T Consensus 451 ~~~~~~~~~~~~~~~~~~F~~~g~v 475 (498)
T COG3104 451 GLTAVTDPAYTAFIEGRVFGTIGVV 475 (498)
T ss_pred ccccccchhhhhhhhhhhHHHHHHH
Confidence 4 22 4445556555444
No 283
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=32.69 E-value=1.7e+02 Score=27.88 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=54.5
Q ss_pred hhHHHHhHhhhhhhhhhhccccccccccccccc---hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccch--
Q 035916 327 FYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG---FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMS-- 401 (506)
Q Consensus 327 ~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~---ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is-- 401 (506)
.|.+.+-+..++..+.++++. +|.+ .++. +..|++-..++.+..+ +|... ..+. +..+...+
T Consensus 110 ~N~l~m~~~~~~~~~~~~~~~---~~~~-l~~~v~~f~~gf~~~~l~~~~~~-~~l~l-----~~~~---~~~~~~~~~~ 176 (214)
T TIGR00123 110 ANGFSMGVIGPFVGWIVYKLA---CRAG-LRRDVAVFLAAMLGDLATYVVTS-VQLAL-----AFPI---PHAGFTGSVV 176 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---Hhcc-cchHHHHHHHHHHHHHHHHHHHH-HHHHH-----hCCC---cccchHHHHH
Confidence 466666666777788888777 5542 2322 4444444444333222 22110 1110 00001111
Q ss_pred --HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhh
Q 035916 402 --LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMI 435 (506)
Q Consensus 402 --~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~m 435 (506)
.....+.++.+++.|-.+......|..+..|+-.
T Consensus 177 ~~~~~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 177 KFMGIFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 3444566678899999999999999999999854
No 284
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=27.98 E-value=1.8e+02 Score=20.96 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHhhhccCchhHHHHHHH
Q 035916 41 WGTAHVLPLAIRYLVDTTISKYWMILVSS 69 (506)
Q Consensus 41 ~~~~~~~~llgG~laD~~lGr~~ti~~~~ 69 (506)
.....+.....|+..|+++|..+...+..
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~t~p~~~~~g 38 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFGTSPWFTLIG 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 34455566788999999999954443333
No 285
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.21 E-value=7.2e+02 Score=25.76 Aligned_cols=93 Identities=22% Similarity=0.220 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccc-----cC-CcCC
Q 035916 400 MSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISER-----IG-KHNW 473 (506)
Q Consensus 400 is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~-----~~-~~~w 473 (506)
-|+..+... +.+++.+...+++-+-|..+.=|.-.+++..| .+++..+=+. +.+++- |.. ++ .+..
T Consensus 111 hS~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG-----~GLSaLlPsl-laLaQG-tg~~~C~~n~t~~r~ 182 (439)
T KOG4255|consen 111 HSWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVG-----MGLSALLPSL-LALAQG-TGRLECDLNGTPGRP 182 (439)
T ss_pred chHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHHHHHh-----ccHHHHHHHH-HHHHcc-CCceeecCCCCCCCC
Confidence 456555555 57789999999999999999888777765433 4555444332 233221 110 00 0111
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHhhhh
Q 035916 474 FQDTLNLSRLDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 474 ~~~~ln~~~l~~~~~lla~l~~v~~~~f~~ 503 (506)
+|.+ -...-|||++.+++..+++.|..
T Consensus 183 fP~r---Fs~s~FFl~l~~~~~~alaAF~v 209 (439)
T KOG4255|consen 183 FPPR---FSVSTFFLALFAFTCAALAAFFV 209 (439)
T ss_pred CCCC---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 22356889888888888877654
No 286
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=26.51 E-value=8.6e+02 Score=26.46 Aligned_cols=88 Identities=7% Similarity=-0.067 Sum_probs=56.5
Q ss_pred HHHHHHhhhhhh----HHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCCCcchhHHHH
Q 035916 412 LGAADGFYEKGI----DMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTLNLSRLDNYY 487 (506)
Q Consensus 412 ~~igE~l~~~~~----lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~ln~~~l~~~~ 487 (506)
--.+|+.-+... .+|+....-.+.-.+..+++.+..+++-++++.+....++.. +.|.++. ++--+...+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~-----~~~~~~~-~~~~~~~~~ 227 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR-----DALASEF-KDLLLQILF 227 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch-----hhHhHHH-HHHHHHHHH
Confidence 346888866554 478888899999999999999999999999998766555422 2222211 111123344
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 035916 488 WLLAALTAANLAVLIIAA 505 (506)
Q Consensus 488 ~lla~l~~v~~~~f~~~a 505 (506)
.+...+..+....+.++-
T Consensus 228 ~vi~~~~~i~~~l~~~~~ 245 (509)
T COG3202 228 IVIVILGIIAILLYRYIN 245 (509)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555666665543
No 287
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=22.40 E-value=7.7e+02 Score=24.45 Aligned_cols=156 Identities=15% Similarity=-0.017 Sum_probs=83.5
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
++.|+..+-.++......+.+...+......=.+=+.|=+++|--||+=++..+..+|..+.......+..+..+...-.
T Consensus 28 lv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~ 107 (269)
T PF06800_consen 28 LVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGF 107 (269)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHH
Confidence 34555555555543455555555666665556666777778999999999999888887776654332222233444445
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-hhhhHHHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-KSWKIKFGILAMFT 174 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-~g~~~~F~i~~~~~ 174 (506)
++++++.+|.-... ..|.=++++++++ ...+..-. -..- +|..+-..+ -+. .+-..+|+--++.|
T Consensus 108 ~Al~liiiGv~lts------~~~~~~~~~~~~~-----~~~kgi~~-Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm 175 (269)
T PF06800_consen 108 LALVLIIIGVILTS------YQDKKSDKSSSKS-----NMKKGILA-LLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGM 175 (269)
T ss_pred HHHHHHHHHHHHhc------ccccccccccccc-----chhhHHHH-HHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 67777776654311 1121111111101 11111211 1122 454443333 222 44455666778889
Q ss_pred HHHHHHHHhcC
Q 035916 175 TVSTLVFLSGS 185 (506)
Q Consensus 175 ~~~~~~f~~~~ 185 (506)
+++.+++....
T Consensus 176 ~i~a~i~~~~~ 186 (269)
T PF06800_consen 176 LIGAFIFNLFS 186 (269)
T ss_pred HHHHHHHhhcc
Confidence 98888876643
No 288
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.81 E-value=9.9e+02 Score=25.48 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=35.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHH
Q 035916 360 FAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMF 426 (506)
Q Consensus 360 ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef 426 (506)
.=-|+++.+++|+...+.|...+ .++|+. ||++.|++-++.+...+++
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~~~---------------~~iHpi----QY~LVGlAl~lFYlLLLSl 345 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELLSK---------------LRIHPI----QYLLVGLALVLFYLLLLSL 345 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------CcccHH----HHHHHHHHHHHHHHHHHHH
Confidence 44688888999998888986532 134443 8999999988888777755
No 289
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.15 E-value=77 Score=32.41 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhh
Q 035916 399 PMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYY 460 (506)
Q Consensus 399 ~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~ 460 (506)
|.+..|++...++ +..+.---.+-.=|++|| .|+|+++.+.|++++.+++..
T Consensus 185 p~~~~~~vl~~~f-------vl~tlaivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLa 236 (372)
T KOG2927|consen 185 PRPLMWQVLGVLF-------VLVTLAIVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLA 236 (372)
T ss_pred CCchhHHHHHHHH-------HHHHHHHHhcccCcHHHh---cceeeeecchhHHHHHHHHHH
Confidence 4566665544333 222222233455788887 799999998888888665544
Done!