Query 035916
Match_columns 506
No_of_seqs 168 out of 1376
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 12:40:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 100.0 6.4E-29 2.2E-33 265.8 22.2 457 7-505 23-503 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.9 2.2E-24 7.4E-29 228.5 30.0 419 6-504 23-471 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.7 3.5E-15 1.2E-19 155.2 24.7 364 18-503 50-432 (451)
4 3o7q_A L-fucose-proton symport 99.7 4.9E-14 1.7E-18 146.0 29.9 147 16-181 46-226 (438)
5 2gfp_A EMRD, multidrug resista 99.6 1.3E-14 4.4E-19 147.7 14.7 141 20-179 24-169 (375)
6 4gc0_A D-xylose-proton symport 99.5 2.2E-12 7.4E-17 135.9 25.0 138 29-177 53-213 (491)
7 2cfq_A Lactose permease; trans 99.3 1.9E-12 6.4E-17 134.5 7.7 145 16-174 28-177 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.7 1E-07 3.6E-12 98.4 14.3 151 16-183 273-432 (451)
9 3o7q_A L-fucose-proton symport 98.6 3.8E-07 1.3E-11 93.9 14.9 143 16-180 279-428 (438)
10 2cfq_A Lactose permease; trans 98.4 1.3E-06 4.6E-11 90.1 10.8 146 19-183 244-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 98.3 1.4E-06 4.8E-11 91.3 9.0 160 16-186 304-473 (491)
12 4gc0_A D-xylose-proton symport 98.0 6.7E-05 2.3E-09 78.3 15.4 147 20-180 301-458 (491)
13 2gfp_A EMRD, multidrug resista 97.5 5.6E-05 1.9E-09 76.0 4.6 138 19-174 223-366 (375)
14 2xut_A Proton/peptide symporte 96.3 0.037 1.3E-06 57.8 13.9 135 323-502 58-196 (524)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=6.4e-29 Score=265.76 Aligned_cols=457 Identities=13% Similarity=0.122 Sum_probs=296.2
Q ss_pred hhhhhhhch-hHHHHHHhhhcc------ChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhh
Q 035916 7 SDVFVAFVF-WMMMDYLTEVWM------ISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFL 79 (506)
Q Consensus 7 ~~~fs~yg~-~~l~~yl~~~l~------~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l 79 (506)
-+++++|+. +.+..|+++++| ++..+++.+.+.+.....++++++|+++||++|||+++.++..+..++.+++
T Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (524)
T 2xut_A 23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL 102 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 356778885 778899999999 9999999999999999999999999999994499999999999999998887
Q ss_pred cccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-
Q 035916 80 FYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF- 157 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~- 157 (506)
..+. .+.+.+++++++.++|.|...|+..++++|.+++++ |. +....+++++.+. +|..+++.+
T Consensus 103 ~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~----~~~~~~~~~~~~~~~g~~~g~~~~ 168 (524)
T 2xut_A 103 AIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KS----LAQKAFDMFYFTINFGSFFASLSM 168 (524)
T ss_dssp HHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TT----HHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7662 145678889999999999999999999999986543 21 3457788899999 999999999
Q ss_pred HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCC-c
Q 035916 158 LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDL-Y 233 (506)
Q Consensus 158 ~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~-~ 233 (506)
+++ .||+..|.+.++..+++.+.+...++.+.+++|++++..+..+.+..+.++++.+.+ +.....+.+..... .
T Consensus 169 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 247 (524)
T 2xut_A 169 PLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGLVLALIGGVSAAY 247 (524)
T ss_dssp THHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccchhhhhhhhhhhhh
Confidence 766 799999999988888777766665555444444443333333333333332211000 00000000000000 0
Q ss_pred cccCCCCcchhhhhhhhcCcccccccccCcc-------cccccchhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHH
Q 035916 234 VVPHSRGLRWLDKAAIILPNKTLRQQERNRW-------RLCSVTEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQA 306 (506)
Q Consensus 234 ~~~~~~~~~~ld~a~~~~~~~~~~~~~~~~~-------~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~ 306 (506)
...+.+....+..+........ ......|| +.+++++.++.|++++.++++.....++..+.|..+.+..|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (524)
T 2xut_A 248 ALVNIPTLGIVAGLCCAMVLVM-GFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA 326 (524)
T ss_dssp TGGGTTTTCSSHHHHHHHHHHH-HHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhh-cccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhH
Confidence 0000000000000000000000 00011222 113334556778888888888888899999999988888887
Q ss_pred HHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhcccccccccccccc--c-hhHhHHHHHHHHHHHHHHHHHHHh
Q 035916 307 EVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVV--G-FAMSMILSILCCVTAAIVETRRLD 383 (506)
Q Consensus 307 ~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~--~-ig~G~~l~~ls~~~~~~~e~~r~~ 383 (506)
.+++.+. + .+.+.+..++++..++..|+.+++..|.. +|++++++ + +..|+++.+++++..+..+..+
T Consensus 327 ~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-- 397 (524)
T 2xut_A 327 NDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAI---ERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM-- 397 (524)
T ss_dssp HHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT--
T ss_pred HhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHH---HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 6655431 2 47788889999999999999999988877 55433222 2 7788888887776655443110
Q ss_pred hhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHhhhhhhhcc
Q 035916 384 VVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGSTLSVYYAGI 463 (506)
Q Consensus 384 ~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~~l~~~~~~ 463 (506)
+ ...+.+.+|+++.+++.++++.+..+...+++.+.+|+++||..+|++....++|+.+++.+...+..
T Consensus 398 ---~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 398 ---D--------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp ---T--------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred ---c--------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 11236788999999999999999999999999999999999999999999999999999988776553
Q ss_pred cccccCCcCCCCC-CCCcchhHHHHHHHHHHHHHHHHhhhhhc
Q 035916 464 ISERIGKHNWFQD-TLNLSRLDNYYWLLAALTAANLAVLIIAA 505 (506)
Q Consensus 464 ~t~~~~~~~w~~~-~ln~~~l~~~~~lla~l~~v~~~~f~~~a 505 (506)
.+ +++|.++ +.+.. .+.|++.+++.+++.++++++.
T Consensus 467 ~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 467 PT----VTEQIVQTGMSVT--AFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp CH----HHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHC---
T ss_pred cc----ccccccccccccc--ccHHHHHHHHHHHHHHHHHHHH
Confidence 22 1245432 22222 2337788888888887766543
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=2.2e-24 Score=228.45 Aligned_cols=419 Identities=13% Similarity=0.080 Sum_probs=286.6
Q ss_pred hhhhhhhhch-hHHHHHHhhh-----ccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhh
Q 035916 6 WSDVFVAFVF-WMMMDYLTEV-----WMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFL 79 (506)
Q Consensus 6 ~~~~fs~yg~-~~l~~yl~~~-----l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l 79 (506)
..+++++|++ +.+..|+++. +|.+..+++.+.+.+.....++.+++|+++||++|||+++..+..+..++.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 23 MWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 3567889985 7889999988 999999999999999999999999999999997799999999999999999888
Q ss_pred cccccccccCCchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-
Q 035916 80 FYDYKPECIGEGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF- 157 (506)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~- 157 (506)
+.+. +.+.+++++++.++|.|...|+..++++|.+++++. +|...+++++.+. +|..+++.+
T Consensus 103 ~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~--------~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 103 ALPF--------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR--------RRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HSCC--------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh--------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc--------cceeeehHHHHHHHHHHHHHHHHH
Confidence 7763 456788899999999999999999999999965432 3567899999999 999999999
Q ss_pred HHH---hhhhHHHHHHHHHHHHHHHHHHhcCcceeec---CCCC-ChhHHHHHHHH--------------HHHhhcccCC
Q 035916 158 LFI---KSWKIKFGILAMFTTVSTLVFLSGSSSYRRR---KPQG-SSLTTVVRVFV--------------ASISKLSYRC 216 (506)
Q Consensus 158 ~~i---~g~~~~F~i~~~~~~~~~~~f~~~~~~~~~~---~p~g-~~l~~i~~v~~--------------~a~~~~~~~~ 216 (506)
+++ .||+..|.++++..+++.+.+...++++..+ +|+. ....+..+... ....++..
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~-- 244 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWN-- 244 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSC--
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCc--
Confidence 777 8999999998888777777665444433221 1111 11111111000 00000000
Q ss_pred CCCCccccccccCCCCccccCCCCcchhhh-hhhhcCcccccccccCcccccccchhhhhhhhhhhhhHHHHhHHHHHhh
Q 035916 217 PRHASELYERSDINDLYVVPHSRGLRWLDK-AAIILPNKTLRQQERNRWRLCSVTEVEETKCLVHLIPICFTFIIPGVVS 295 (506)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~-a~~~~~~~~~~~~~~~~~~~~~~~~ve~~k~l~~ll~l~~~~~~f~~~~ 295 (506)
+ .+....+.. .....+.. .....|+. .....+++|+..+..+++.....+|..+
T Consensus 245 -~-------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (491)
T 4aps_A 245 -S-------------------LPAYINLLTIVAIAIPVF----YFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIE 299 (491)
T ss_dssp -C-------------------TTHHHHHHHHHHHHHHHH----HHHHHC-------------CTTHHHHHHHHHHHHHHH
T ss_pred -c-------------------cccchhhhhHHHHHHHHH----HHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000 00000000 00000100 0112245677778888998999999999
Q ss_pred cccchhHHHHHHHhcCCCCCCceeChhhhhhhhHHHHhHhhhhhhhhhhccccccccccccccchhHhHHHHHHHHHHHH
Q 035916 296 SIGNTFLLEQAEVINGKDGGNFSFGPLLLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVGFAMSMILSILCCVTAA 375 (506)
Q Consensus 296 ~Q~~t~~~~q~~~~d~~~g~~~~ip~~~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~ig~G~~l~~ls~~~~~ 375 (506)
.|..+.+..+..+.- + .-..+.+.+..++.+..++..|+.+++..++. ||.......+..|+++.+++++...
T Consensus 300 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~---~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 300 EQGSVVLATFAAERV---D-SSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK---KNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp GGGGTHHHHHHHHSC---C-CSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT---TC---CHHHHHHHHHHHHHHHTTTH
T ss_pred hhccHHHHHHHHHHh---c-cCccCHHHHhccchHHHHHHHHHHHHHHHHHh---ccCCCchHHHHHHHHHHHHHHHHHH
Confidence 998887666543221 1 11156677889999999999999998775543 3322111227789988888887766
Q ss_pred HHHHHHHhhhhhcCCCCCCCCCccchHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHHHHHHHh
Q 035916 376 IVETRRLDVVRSHGLIDKPDEKIPMSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGVGIIGST 455 (506)
Q Consensus 376 ~~e~~r~~~~~~~g~~~~~~~~~~is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~aiG~~l~~ 455 (506)
..+... + ...+.+.+|+++.+++.++++.+..+...+++.+..|++.||..+|++.....+|..+++
T Consensus 373 ~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 373 IPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654221 1 112467889999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhcccccccCCcCCCCCCCCcchhHHHHHHHHHHHHHHHHhhhhh
Q 035916 456 LSVYYAGIISERIGKHNWFQDTLNLSRLDNYYWLLAALTAANLAVLIIA 504 (506)
Q Consensus 456 ~l~~~~~~~t~~~~~~~w~~~~ln~~~l~~~~~lla~l~~v~~~~f~~~ 504 (506)
.+....... .....|+..+++.++..+..++.
T Consensus 440 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 440 QLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 875554321 12345666777777766655543
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.69 E-value=3.5e-15 Score=155.18 Aligned_cols=364 Identities=11% Similarity=-0.018 Sum_probs=218.8
Q ss_pred HHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcc----cccccccCCchH
Q 035916 18 MMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFY----DYKPECIGEGQK 93 (506)
Q Consensus 18 l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~----~~~~~~~~~~~~ 93 (506)
...++.+++ .+..+.+.+.+.+.....++.+++|+++|| +|||+++.++..+..++.+++.+ +. +.
T Consensus 50 ~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--------~~ 119 (451)
T 1pw4_A 50 AMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATS--------SI 119 (451)
T ss_dssp HHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------SS
T ss_pred HHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccc--------cH
Confidence 344555678 999999999999999999999999999999 79999999999999999988877 42 34
Q ss_pred HHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh-hhHHH
Q 035916 94 ILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS-WKIKF 167 (506)
Q Consensus 94 ~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g-~~~~F 167 (506)
+.+++++++.++|.|...|...++++|.++++ +|.+.++++..+. +|.++++.+ +++ .| |+..|
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~----------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f 189 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK----------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 189 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT----------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCch----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 67788899999999999999999999988432 3457899999999 999999998 775 77 99999
Q ss_pred HHHHHHHHHHHHHHHhcCcceeecCCCCChhHHHHHHHHHHHhhcccCCCCCCccccccccCCCCccccCCCCcchhhhh
Q 035916 168 GILAMFTTVSTLVFLSGSSSYRRRKPQGSSLTTVVRVFVASISKLSYRCPRHASELYERSDINDLYVVPHSRGLRWLDKA 247 (506)
Q Consensus 168 ~i~~~~~~~~~~~f~~~~~~~~~~~p~g~~l~~i~~v~~~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~a 247 (506)
.+.++..++..++.....+ ++|+... .. ..++. +++ ..+ +..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~-~~~~~----~~~---------~~~-----~~~ 231 (451)
T 1pw4_A 190 YMPAFCAILVALFAFAMMR----DTPQSCG---------------LP-PIEEY----KND---------YPD-----DYN 231 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCC----CSSTTTC---------------CC-SCTTT----CCC--------------------
T ss_pred HHHHHHHHHHHHHHHhhcc----CCHhhcC---------------CC-Chhhh----ccc---------ccc-----cch
Confidence 9888766555443322221 1111100 00 00000 000 000 000
Q ss_pred hhhcCcccccccccCccccccc---chhhhhhhhhhhhhHHHHhHHHHHhhcccchhHHHHHHHhcCCCCCCceeChh--
Q 035916 248 AIILPNKTLRQQERNRWRLCSV---TEVEETKCLVHLIPICFTFIIPGVVSSIGNTFLLEQAEVINGKDGGNFSFGPL-- 322 (506)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~---~~ve~~k~l~~ll~l~~~~~~f~~~~~Q~~t~~~~q~~~~d~~~g~~~~ip~~-- 322 (506)
.. .+ +... .++ .+.-..|.+ ..+++.....+..+....+.... .+....+ .++.
T Consensus 232 ~~-~~-------~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g----~~~~~~ 290 (451)
T 1pw4_A 232 EK-AE-------QELT---AKQIFMQYVLPNKLL---WYIAIANVFVYLLRYGILDWSPT---YLKEVKH----FALDKS 290 (451)
T ss_dssp ---------------C---CTHHHHHHTSSCHHH---HHHHHHHHHHHHHHHHHHHHHHH---HBTTBSC----CCHHHH
T ss_pred hh-hh-------cccc---cccchHHHHHcCHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC----CCHHHH
Confidence 00 00 0000 000 000001111 22222222222222222222111 1222222 2332
Q ss_pred -hhhhhhHHHHhHhhhhhhhhhhccccccccccccccc-hhHhHHHHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCCcc
Q 035916 323 -LLLLFYYISKGRFTAFYEGFVGHLTSVGWNAVAHVVG-FAMSMILSI-LCCVTAAIVETRRLDVVRSHGLIDKPDEKIP 399 (506)
Q Consensus 323 -~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~~~~~~~-ig~G~~l~~-ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~ 399 (506)
.+.....+..++..++..++. +|..+.+++ +..+.++.. ++++..... ..
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~ 343 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMS-------DKVFRGNRGATGVFFMTLVTIATIVYWMN--------------------PA 343 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHTSTTCHHHHHHHHHHHHHHHHHHTTSC--------------------CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHhcCCchhHHHHHHHHHHHHHHHHHHh--------------------cc
Confidence 344555555555566655554 333111222 334443333 333221100 01
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHHHHHHhHH-HHHHHhhhhhhhcccccccCCcCCCCCCC
Q 035916 400 MSLFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYIFVATMGV-GIIGSTLSVYYAGIISERIGKHNWFQDTL 478 (506)
Q Consensus 400 is~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl~~l~~ai-G~~l~~~l~~~~~~~t~~~~~~~w~~~~l 478 (506)
.+.++.+...++.|++.....+.......+..|++.|+..+|+......+ |..+++.+........ +
T Consensus 344 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g------ 411 (451)
T 1pw4_A 344 GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G------ 411 (451)
T ss_dssp TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C------
T ss_pred cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C------
Confidence 24556666777888888888888889999999999999999999999999 9999988766543211 1
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhh
Q 035916 479 NLSRLDNYYWLLAALTAANLAVLII 503 (506)
Q Consensus 479 n~~~l~~~~~lla~l~~v~~~~f~~ 503 (506)
...-|++.+++.++..+.+++
T Consensus 412 ----~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 412 ----WDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp ----SHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHHHHH
Confidence 244566677777776665544
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.66 E-value=4.9e-14 Score=146.02 Aligned_cols=147 Identities=13% Similarity=0.157 Sum_probs=121.8
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhh---cccccccccCCch
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFL---FYDYKPECIGEGQ 92 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l---~~~~~~~~~~~~~ 92 (506)
..+..++.+++|.+..+.+.+.+.+.....++.++.|+++|| +|||+++.++..+..++.++. ..+ .+
T Consensus 46 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~--------~~ 116 (438)
T 3o7q_A 46 DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEI--------MN 116 (438)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHT--------TC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhcccc--------cc
Confidence 344556778999999999999999999999999999999999 799999999999999998887 433 35
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH----hh----
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI----KS---- 162 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i----~g---- 162 (506)
.+.+++++++.++|.|...|...++++|.++++ +|.+.++++..+. +|..+++.+ +++ .+
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~----------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 186 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPES----------SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ 186 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST----------THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 678899999999999999999999999988442 2456789999999 999999998 555 22
Q ss_pred ---------------------hhHHHHHHHHHHHHHHHHH
Q 035916 163 ---------------------WKIKFGILAMFTTVSTLVF 181 (506)
Q Consensus 163 ---------------------~~~~F~i~~~~~~~~~~~f 181 (506)
|+..|.+.++...+..+.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 187 DVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999977666555444433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.58 E-value=1.3e-14 Score=147.70 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=120.9
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
..+.+++|.+..+.+.+.+.+.....++.++.|+++|| +||||++.++..+..++.+++..+ .+.+.++++
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~ 94 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTT--------SSLTVLIAA 94 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHh--------ccHHHHHHH
Confidence 34567899999999999999999999999999999999 799999999999999998887776 256778889
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAMFT 174 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~~~ 174 (506)
..+.++|.+...|...++..|.++++ +|.+.++++.... +|..+++.+ +++ .||+..|.+.++..
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERT----------QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS----------SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999988542 2346788888999 999999999 777 69999999877766
Q ss_pred HHHHH
Q 035916 175 TVSTL 179 (506)
Q Consensus 175 ~~~~~ 179 (506)
++..+
T Consensus 165 ~~~~~ 169 (375)
T 2gfp_A 165 AGVTF 169 (375)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.51 E-value=2.2e-12 Score=135.95 Aligned_cols=138 Identities=10% Similarity=-0.034 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccc----------cCCchHHHHHH
Q 035916 29 SFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPEC----------IGEGQKILLYT 98 (506)
Q Consensus 29 ~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~----------~~~~~~~~~~~ 98 (506)
+....+.+.+++..+..++++++|+++|| +|||+++.++.+++.+|.++.+.+..... .-..+...+.+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 34556778888888889999999999999 79999999999999999887664321000 01235678999
Q ss_pred HHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH-----------hhhhH
Q 035916 99 ALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI-----------KSWKI 165 (506)
Q Consensus 99 ~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i-----------~g~~~ 165 (506)
++++.|+|.|+..+..+.+++|..++ + +|.+...++..+. +|.+++..+ ... .+|+.
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~----~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPA----H------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCG----G------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCH----H------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 99999999999999999999976532 2 3456677788888 888888877 332 35777
Q ss_pred HHHHHHHHHHHH
Q 035916 166 KFGILAMFTTVS 177 (506)
Q Consensus 166 ~F~i~~~~~~~~ 177 (506)
.+.+..+..++.
T Consensus 202 ~~~~~~~~~~~~ 213 (491)
T 4gc0_A 202 MFASECIPALLF 213 (491)
T ss_dssp HHHTTHHHHHHH
T ss_pred Hhhhhhhhhhhh
Confidence 777655554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=1.9e-12 Score=134.53 Aligned_cols=145 Identities=8% Similarity=-0.111 Sum_probs=92.3
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchH-H
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQK-I 94 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~-~ 94 (506)
+.+..|+++++|.+..+++.+.+.+.....++.+++|+++|| +||||++.++..+..++...+...... ... .
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~ 101 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQY 101 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 567789988899999999999999999999999999999999 799999999888776543211110000 000 0
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhHHHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKIKFGIL 170 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~~F~i~ 170 (506)
.+..++.+.+++.|...+...+...+..++ .++ ++...+....... +|..+++.+ +++ .+|+..|.+.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-------~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~ 173 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEK-VSR-------RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLG 173 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-HHH-------HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhh-------hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 112233344444444333333333332211 111 1223355555667 888888888 666 6789888876
Q ss_pred HHHH
Q 035916 171 AMFT 174 (506)
Q Consensus 171 ~~~~ 174 (506)
++..
T Consensus 174 ~~~~ 177 (417)
T 2cfq_A 174 SGCA 177 (417)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 5543
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.72 E-value=1e-07 Score=98.39 Aligned_cols=151 Identities=13% Similarity=0.076 Sum_probs=120.8
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccC--chhHHHHHHHHHHH-hhhhhhcccccccccCCch
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTI--SKYWMILVSSFAYT-AVIKFLFYDYKPECIGEGQ 92 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~l--Gr~~ti~~~~~~~~-iG~~~l~~~~~~~~~~~~~ 92 (506)
..+..|+++.+|++..+++.+...+.....++.+++|+++|| + |||+.+..+..+.. ++.+++.... ..+
T Consensus 273 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 345 (451)
T 1pw4_A 273 DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNP------AGN 345 (451)
T ss_dssp HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCC------TTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhc------ccC
Confidence 455667777799999999999999999999999999999999 6 99999888887766 7776666542 123
Q ss_pred HHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-H-HHHHHHHH-HHH---hhhhHH
Q 035916 93 KILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-V-PNILSIAF-LFI---KSWKIK 166 (506)
Q Consensus 93 ~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-i-G~~i~~~~-~~i---~g~~~~ 166 (506)
.+.....+.+.+++.++..+...++..|.++++ ++...++.+.... + |..+++.+ +++ .||+..
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 415 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKK----------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 415 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456667778888888888888888999877432 2457889988888 8 99999999 777 789999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 035916 167 FGILAMFTTVSTLVFLS 183 (506)
Q Consensus 167 F~i~~~~~~~~~~~f~~ 183 (506)
|.+.++..+++.+....
T Consensus 416 ~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 416 FMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888877777665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.62 E-value=3.8e-07 Score=93.87 Aligned_cols=143 Identities=12% Similarity=-0.019 Sum_probs=110.7
Q ss_pred hHHHHH-HhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHH
Q 035916 16 WMMMDY-LTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKI 94 (506)
Q Consensus 16 ~~l~~y-l~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~ 94 (506)
..+..| +++.+|++..+++.+...+.....++.+++|+++|| +|||+.+..+..+..++.+++.... +..
T Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 349 (438)
T 3o7q_A 279 SYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG--------GHV 349 (438)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCC--------HHH
T ss_pred HHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHcC--------CcH
Confidence 456678 888889999999999999999999999999999999 7999999999999888877766552 222
Q ss_pred HHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hh-hhHHHH
Q 035916 95 LLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KS-WKIKFG 168 (506)
Q Consensus 95 ~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g-~~~~F~ 168 (506)
....+.+.+++.+...|...++..|.++++ +. ....+. ... +|..+++.+ +++ .| ++..|.
T Consensus 350 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 350 -GLIALTLCSAFMSIQYPTIFSLGIKNLGQD----TK-------YGSSFI-VMTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp -HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG----HH-------HHHHHH-HHTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cc-------chhhHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 344557888999999999999988877543 11 223333 345 889999888 777 67 999999
Q ss_pred HHHHHHHHHHHH
Q 035916 169 ILAMFTTVSTLV 180 (506)
Q Consensus 169 i~~~~~~~~~~~ 180 (506)
+++++.++..+.
T Consensus 417 ~~~~~~~~~~~~ 428 (438)
T 3o7q_A 417 IPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877666555443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.35 E-value=1.3e-06 Score=90.12 Aligned_cols=146 Identities=9% Similarity=0.023 Sum_probs=98.5
Q ss_pred HHHHhhhccCh---hHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHH
Q 035916 19 MDYLTEVWMIS---FVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKIL 95 (506)
Q Consensus 19 ~~yl~~~l~~~---~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~ 95 (506)
..|+.+.++.. ....+.+.........++.+++|+++|| +|||+++..+..+..++.+++.... +.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~--------~~~~ 314 (417)
T 2cfq_A 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFAT--------SALE 314 (417)
T ss_dssp HHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCC--------SHHH
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhc--------cHHH
Confidence 34665555432 3333444444445566778999999999 7999999999888888776665442 2344
Q ss_pred HHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHH-HHHHH-HHHHHHHHH-HHH---hhhhHHHHH
Q 035916 96 LYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSF-WGLSL-VPNILSIAF-LFI---KSWKIKFGI 169 (506)
Q Consensus 96 ~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~-~y~~i-iG~~i~~~~-~~i---~g~~~~F~i 169 (506)
+.+...+.+++.+...+...++..|.+++ + .+...+.+ +..+. +|..+++.+ +++ .|++..|.+
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~----~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~ 384 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEV----R------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV 384 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCH----H------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCH----H------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHH
Confidence 45555556666666666677788876643 1 23455676 45667 999999988 776 678889988
Q ss_pred HHHHHHHHHHHHHh
Q 035916 170 LAMFTTVSTLVFLS 183 (506)
Q Consensus 170 ~~~~~~~~~~~f~~ 183 (506)
.++..+++.++...
T Consensus 385 ~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 385 LGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 88777777665443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.28 E-value=1.4e-06 Score=91.33 Aligned_cols=160 Identities=14% Similarity=-0.001 Sum_probs=113.4
Q ss_pred hHHHHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHH-----HHHHHHHhhhhhhcccccccc-cC
Q 035916 16 WMMMDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMIL-----VSSFAYTAVIKFLFYDYKPEC-IG 89 (506)
Q Consensus 16 ~~l~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~-----~~~~~~~iG~~~l~~~~~~~~-~~ 89 (506)
..+..|+.+.++.+..+++.+.........++.++.|+++|| +|||+... .+..+..++.+++........ ..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (491)
T 4aps_A 304 VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG 382 (491)
T ss_dssp THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 445667777788876677777777777788888999999999 79876544 788888888777665321000 01
Q ss_pred CchHHHHHHHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH--hhhhH
Q 035916 90 EGQKILLYTALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI--KSWKI 165 (506)
Q Consensus 90 ~~~~~~~~~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i--~g~~~ 165 (506)
..+.+.+..+..+.++|.+...|...++..|.++++. +....+.++... +|..+++.+ +++ .++..
T Consensus 383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~----------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~ 452 (491)
T 4aps_A 383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF----------NSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVA 452 (491)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----------SSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTH
T ss_pred CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 1234566778888999999999999999998875432 346677888888 999999999 777 67777
Q ss_pred HHHHHHHHHHHHHHHHHhcCc
Q 035916 166 KFGILAMFTTVSTLVFLSGSS 186 (506)
Q Consensus 166 ~F~i~~~~~~~~~~~f~~~~~ 186 (506)
.|.+.++..+++.++++...+
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 453 YFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888777776666665554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.03 E-value=6.7e-05 Score=78.29 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=93.9
Q ss_pred HHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHHHHhhhhhhcccccccccCCchHHHHHHH
Q 035916 20 DYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFAYTAVIKFLFYDYKPECIGEGQKILLYTA 99 (506)
Q Consensus 20 ~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~~~iG~~~l~~~~~~~~~~~~~~~~~~~~ 99 (506)
.++.+..+.+..+.............++.++++++.|| +|||+.++.+.....++.+.+........ ..........
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~ 377 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQA--PGIVALLSML 377 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHHHHHHHHHHHhccc--chHHHHHHHH
Confidence 34455677777777777777777888899999999999 79999999999888887766654322110 1111111222
Q ss_pred HHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---------hhhhHHHH
Q 035916 100 LGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---------KSWKIKFG 168 (506)
Q Consensus 100 l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---------~g~~~~F~ 168 (506)
+...+.+ .+.-|....+.+|.++.+ .|....++-+... +|+++++.+ +++ .++...|.
T Consensus 378 ~~~~~~~-~~~~~~~~~~~~E~fPt~----------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~ 446 (491)
T 4gc0_A 378 FYVAAFA-MSWGPVCWVLLSEIFPNA----------IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYW 446 (491)
T ss_dssp HHHHHHH-TTTTHHHHHHHHHSSCTT----------THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH-hHHHHHHHHHHHHhCCHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2222222 234566778888888442 2456778777777 888877766 555 33445566
Q ss_pred HHHHHHHHHHHH
Q 035916 169 ILAMFTTVSTLV 180 (506)
Q Consensus 169 i~~~~~~~~~~~ 180 (506)
+-++..+++.+.
T Consensus 447 i~~~~~~~~~i~ 458 (491)
T 4gc0_A 447 IYGCMGVLAALF 458 (491)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 655555555543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.52 E-value=5.6e-05 Score=76.02 Aligned_cols=138 Identities=9% Similarity=-0.092 Sum_probs=97.4
Q ss_pred HHHHhhhccChhHHHHHHHHHHHHHHHhHHHHHHHhhhccCchhHHHHHHHHH-HHhhhhhhcccccccccCCchHHHHH
Q 035916 19 MDYLTEVWMISFVHAAGIVNIFWGTAHVLPLAIRYLVDTTISKYWMILVSSFA-YTAVIKFLFYDYKPECIGEGQKILLY 97 (506)
Q Consensus 19 ~~yl~~~l~~~~~~a~~i~~~~~~~~~~~~llgG~laD~~lGr~~ti~~~~~~-~~iG~~~l~~~~~~~~~~~~~~~~~~ 97 (506)
..|+++.+|.+..+++.+.........++.++.|+++|| .|| .+..+... ...+..++.....+ ..+.+.+.
T Consensus 223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 295 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FST--LMWQSVICCLLAGLLMWIPDWFG----VMNVWTLL 295 (375)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHH--HHHHHHHHHHHTSSSSSHHHHHH----HHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHhhhc----cccHHHHH
Confidence 345566789999999999999998888899999999998 576 33344443 44444433322100 01345566
Q ss_pred HHHHHHHhhcccccccchhhhhcccccCCccccccccccchhHHHHHHHHH-HHHHHHHHH-HHH---hhhhHHHHHHHH
Q 035916 98 TALGLIAFGISGHMGSIDRFIADQATNFREEEFSMSFRPQLIIFSFWGLSL-VPNILSIAF-LFI---KSWKIKFGILAM 172 (506)
Q Consensus 98 ~~l~l~~~G~g~~k~~~~~~~~dq~~~~~~~~~~~~~~~~~~~f~~~y~~i-iG~~i~~~~-~~i---~g~~~~F~i~~~ 172 (506)
....+.+++.|...|...++..|..+ + ++.+..+.+.... +|..+++.+ +.+ .+|...+.+..+
T Consensus 296 ~~~~l~g~~~~~~~~~~~~~~~~~~p----~-------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 296 VPAALFFFGAGMLFPLATSGAMEPFP----F-------LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHTSSTTHHHHHTHHH----H-------HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhCC----c-------ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 77788899999999999999998763 2 2457788888888 999999888 666 567777766444
Q ss_pred HH
Q 035916 173 FT 174 (506)
Q Consensus 173 ~~ 174 (506)
.+
T Consensus 365 ~~ 366 (375)
T 2gfp_A 365 GL 366 (375)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.33 E-value=0.037 Score=57.83 Aligned_cols=135 Identities=13% Similarity=0.001 Sum_probs=89.6
Q ss_pred hhhhhhHHHHhHhhhhhhhhhhccccccccc-cccccchhHhHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCccch
Q 035916 323 LLLLFYYISKGRFTAFYEGFVGHLTSVGWNA-VAHVVGFAMSMILSILCCVTAAIVETRRLDVVRSHGLIDKPDEKIPMS 401 (506)
Q Consensus 323 ~l~~~n~i~iivl~Pl~~~~~~pl~~~~~r~-~~~~~~ig~G~~l~~ls~~~~~~~e~~r~~~~~~~g~~~~~~~~~~is 401 (506)
++.+...+..++..|+..++. +|. ++++ .+.+|.++.+++.+..+.. +.+
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l~-------dr~~g~r~-~~~~~~~~~~~~~~~~~~~---------------------~~~ 108 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWIA-------DRFFGKYN-TILWLSLIYCVGHAFLAIF---------------------EHS 108 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHHH-------TTSSCSHH-HHHHHHHHHHHHHHHHHHT---------------------SSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHhcchH-HHHHHHHHHHHHHHHHHHh---------------------ccc
Confidence 344555666666667666665 444 3111 1666776666665544322 125
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhhccChhhHHHHHHH---HHHHhHHHHHHHhhhhhhhcccccccCCcCCCCCCC
Q 035916 402 LFWLLPQFLLLGAADGFYEKGIDMFFSDQFPRMIFRYLKYI---FVATMGVGIIGSTLSVYYAGIISERIGKHNWFQDTL 478 (506)
Q Consensus 402 ~~wli~~y~l~~igE~l~~~~~lef~~~~aP~~mks~~~gl---~~l~~aiG~~l~~~l~~~~~~~t~~~~~~~w~~~~l 478 (506)
.++++...++.|+++....+....++.+..|++.|+..+++ +....++|..+++.+....... .+|
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g~----- 177 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN------FGA----- 177 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT------SCH-----
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccH-----
Confidence 66777788999999999999999999999999999877666 8888899998888775543210 122
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhh
Q 035916 479 NLSRLDNYYWLLAALTAANLAVLI 502 (506)
Q Consensus 479 n~~~l~~~~~lla~l~~v~~~~f~ 502 (506)
..-|++.+++.++..+.+.
T Consensus 178 -----~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 178 -----AVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp -----HHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 3345666666666655543
Done!