BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035919
         (552 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l
 pdb|3TOJ|B Chain B, Structure Of The Spry Domain Of Human Ash2l
          Length = 213

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 120/231 (51%), Gaps = 42/231 (18%)

Query: 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLG 374
           ++ L+   +A ++++SDDRLT    KGY MVRA+ GV +GAWY+EI V  +      RLG
Sbjct: 12  RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 71

Query: 375 WSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALRXXXXXXXXXXXDVIGFYINLPEGGQY 434
           WS   G+LQAP+GYD  S+ +R   G+K H+++            DV+GFYINLP     
Sbjct: 72  WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSI-GKHYSSGYGQGDVLGFYINLP----- 125

Query: 435 APKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAAS 494
                                 ED       SEI F+KNGV QGVA+KD++ G Y+PA S
Sbjct: 126 ----------------------EDTISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 163

Query: 495 MYSLPNQPNCVVKFNFGPDFECFPDDFGERP---------VPSPMAEVPYH 536
           +Y      +C V  NFGP F+  P D   RP         V   +A+V YH
Sbjct: 164 LYK-----SCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYH 209


>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
 pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
           Dehydrogenase Multi-Enzyme Complex
          Length = 428

 Score = 29.3 bits (64), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 294 DTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVE 353
           D  L+ PV +  D+    P   +       AEK    D +LT G  KG        G   
Sbjct: 299 DRGLLVPVIKHADR---KPIFALAQEINELAEKAR--DGKLTPGEMKGASCTITNIGSAG 353

Query: 354 GAWYY------EIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKAL 407
           G W+       E+ ++ +G      +    E   + AP+     SF +R IDG+   KAL
Sbjct: 354 GQWFTPVINHPEVAILGIGRIAEKPIVRDGEI--VAAPMLALSLSFDHRMIDGATAQKAL 411


>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
 pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
           Domain (Residues 184-425) From Bacillus
           Stearothermophilus
          Length = 242

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 294 DTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVE 353
           D  L+ PV +  D+    P   +       AEK    D +LT G  KG        G   
Sbjct: 115 DRGLLVPVIKHADR---KPIFALAQEINELAEKAR--DGKLTPGEMKGASCTITNIGSAG 169

Query: 354 GAWYY------EIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKAL 407
           G W+       E+ ++ +G      +    E   + AP+     SF +R IDG+   KAL
Sbjct: 170 GQWFTPVINHPEVAILGIGRIAEKPIVRDGE--IVAAPMLALSLSFDHRMIDGATAQKAL 227


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.130    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,803,000
Number of Sequences: 62578
Number of extensions: 646595
Number of successful extensions: 843
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 15
length of query: 552
length of database: 14,973,337
effective HSP length: 104
effective length of query: 448
effective length of database: 8,465,225
effective search space: 3792420800
effective search space used: 3792420800
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)