BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035919
(552 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo
sapiens GN=ASH2L PE=1 SV=1
Length = 628
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 140/243 (57%), Gaps = 30/243 (12%)
Query: 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLG 374
++ L+ +A ++++SDDRLT KGY MVRA+ GV +GAWY+EI V + RLG
Sbjct: 380 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 439
Query: 375 WSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQY 434
WS G+LQAP+GYD S+ +R G+K H+++ + Y GY +GDV+GFYINLPE +
Sbjct: 440 WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHY-SSGYGQGDVLGFYINLPEDTET 498
Query: 435 APKPP------------HFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFK 482
A P +++++ + +V D E K P SEI F+KNGV QGVA+K
Sbjct: 499 AKSLPDTYKDKALIKFKSYLYFEEKDFV---DKAEKSLKQTPHSEIIFYKNGVNQGVAYK 555
Query: 483 DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERP---------VPSPMAEV 533
D++ G Y+PA S+Y +C V NFGP F+ P D RP V +A+V
Sbjct: 556 DIFEGVYFPAISLYK-----SCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADV 610
Query: 534 PYH 536
YH
Sbjct: 611 LYH 613
>sp|Q91X20|ASH2L_MOUSE Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Mus
musculus GN=Ash2l PE=1 SV=1
Length = 623
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 139/243 (57%), Gaps = 30/243 (12%)
Query: 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLG 374
++ L+ +A ++++SDDRLT KGY MVRA+ GV +GAWY+EI V + RLG
Sbjct: 375 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 434
Query: 375 WSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQY 434
WS G+LQAP+GYD S+ +R G+K H+++ + Y GY +GDV+GFYINLPE +
Sbjct: 435 WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHY-SSGYGQGDVLGFYINLPEDTET 493
Query: 435 APKPP------------HFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFK 482
A P +++++ + +V D E K P SEI F+KNGV QGVA++
Sbjct: 494 AKSLPDTYKDKALIKFKSYLYFEEKDFV---DKAEKSLKQTPHSEIIFYKNGVNQGVAYR 550
Query: 483 DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERP---------VPSPMAEV 533
D++ G Y+PA S+Y +C V NFGP F+ P D P V +A+V
Sbjct: 551 DIFEGVYFPAISLYK-----SCTVSINFGPSFKYPPKDLTYHPMSDMGWGAVVEHTLADV 605
Query: 534 PYH 536
YH
Sbjct: 606 LYH 608
>sp|O60070|ASH2_SCHPO Set1 complex component ash2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ash2 PE=4 SV=1
Length = 652
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 110/245 (44%), Gaps = 52/245 (21%)
Query: 327 VELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALG--ETGHTRLGWSTEKGDLQA 384
V + L A KG+RM R+ + G WY+EIK+ G + H R+G S + L A
Sbjct: 361 VFIDHSALCATVEKGFRMARSNVFMTSGEWYFEIKIEKGGGDDGAHVRIGVSRREAPLDA 420
Query: 385 PVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPE--GGQYAPKPPHF- 441
PVGYD S+G RD+ G KVH + R + + + GD+IG +I+LP+ Q+ P
Sbjct: 421 PVGYDAYSYGLRDLGGQKVHMS-RPRNFMDSFGTGDIIGLHISLPKPSFAQHTTLPSCHD 479
Query: 442 ---VWYKGQRYVCAPD-------------SKE----DPPKVVPGSEISFFKNGVCQGVAF 481
+ YKGQ Y PD SK D P +PGS I +KNG G AF
Sbjct: 480 RIPIRYKGQLYFEQPDYVPSKMMDELMIPSKHNRYIDLP-YIPGSFIKVYKNGSYMGTAF 538
Query: 482 KDLYGGR------------------YYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGE 523
++L YYP+ SMY + +F FGP F P G
Sbjct: 539 ENLLDFNPPNSINSNHYSFDDGSLGYYPSISMYG-----GGIARFQFGPQFSHRPLVLGS 593
Query: 524 --RPV 526
RPV
Sbjct: 594 NVRPV 598
>sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1
Length = 620
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+V+ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 90 VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 149
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL G + K H
Sbjct: 150 FCSSGTGQPYGPT-FTTGDVIGCCVNLINGTCFYTKNGH 187
>sp|A3KMV8|RBP10_BOVIN Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1
Length = 620
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+V+ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 90 VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 149
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL G + K H
Sbjct: 150 FCSSGTGQPYGPT-FTTGDVIGCCVNLINGTCFYTKNGH 187
>sp|Q6VN19|RBP10_MOUSE Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=2
Length = 620
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+V+ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 90 VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 149
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL G + K H
Sbjct: 150 FCSSGTGQPYGPT-FTTGDVIGCCVNLINGTCFYTKNGH 187
>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1
Length = 548
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VR+T + G +Y+E+K+++ G G+ +G ST+ +L G+D +S+GY DG S
Sbjct: 57 VRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHS 116
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL + + K H
Sbjct: 117 FCSSGTGQPYGPT-FTTGDVIGCCVNLIDNTCFYTKNGH 154
>sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1
Length = 548
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VR+T + G +Y+E+K+++ G G+ +G ST+ +L G+D +S+GY DG S
Sbjct: 57 VRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHS 116
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL + + K H
Sbjct: 117 FCSSGTGQPYGPT-FTTGDVIGCCVNLIDNTCFYTKNGH 154
>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1
Length = 604
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+V+ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 78 VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 137
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL + K H
Sbjct: 138 FCSSGTGQPYGPT-FTTGDVIGCCVNLINNTCFYTKNGH 175
>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster
GN=RanBPM PE=1 SV=1
Length = 962
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 62/158 (39%), Gaps = 40/158 (25%)
Query: 354 GAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGE 413
G +Y+E+++++ G G+ +G + ++ + G+D S+GY DG+ + +
Sbjct: 466 GLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYG 525
Query: 414 EGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKN 473
+ GDVIG +N + + KN
Sbjct: 526 PTFTTGDVIGCCVNFVNNTCF-----------------------------------YTKN 550
Query: 474 GVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFG 511
GV G+AF+DL + YP + + P V NFG
Sbjct: 551 GVDLGIAFRDL-PTKLYPTVGLQT----PGEEVDANFG 583
>sp|Q96S59|RANB9_HUMAN Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1
Length = 729
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+V+ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 202 VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 261
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL + K H
Sbjct: 262 FCSSGTGQPYGPT-FTTGDVIGCCVNLINNTCFYTKNGH 299
>sp|A1L252|RANB9_DANRE Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1
Length = 597
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+++ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 84 VRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 143
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL + K H
Sbjct: 144 FCSSGTGQPYGPT-FTTGDVIGCCVNLINNTCFYTKNGH 181
>sp|P69566|RANB9_MOUSE Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1
Length = 653
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 345 VRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDG-S 401
VRAT + G +Y+E+K+V+ G G+ +G S + ++ G+D +S+GY DG S
Sbjct: 127 VRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHS 186
Query: 402 KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440
+ YG + GDVIG +NL + K H
Sbjct: 187 FCSSGTGQPYGPT-FTTGDVIGCCVNLINNTCFYTKNGH 224
>sp|P43132|BRE2_YEAST COMPASS component BRE2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BRE2 PE=1 SV=2
Length = 505
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 36/125 (28%)
Query: 341 GYRMVRATRGVVEGAWYYEIKVVALG---------------------------------- 366
G+R R+ + EG Y+E++V+ G
Sbjct: 118 GWRTARSDVCIKEGMTYWEVEVIRGGNKKFADGVNNKENADDSVDEVQSGIYEKMHKQVN 177
Query: 367 ETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEG--YKEGDVIGF 424
+T H R G + L+APVG+D +G RDI +H+ E G KEGD IGF
Sbjct: 178 DTPHLRFGVCRREASLEAPVGFDVYGYGIRDISLESIHEGKLNCVLENGSPLKEGDKIGF 237
Query: 425 YINLP 429
++LP
Sbjct: 238 LLSLP 242
>sp|E9Q401|RYR2_MOUSE Ryanodine receptor 2 OS=Mus musculus GN=Ryr2 PE=1 SV=1
Length = 4966
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 246 ISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKEVSPEDTVLITPVPRFP 305
+S L PS K + +NVW R+G Q++V + P
Sbjct: 983 LSFIKLTPSQEAMVDKLAENAHNVWARDRIRQGWT---YGIQQDVKNRRNPRLVPYTLLD 1039
Query: 306 DKGDDNPE------MKICLSKVYKAE---KVELSDDRLTAGSTKGYRMVRA--TRGVVEG 354
D+ + + ++ L Y E + S + +G+ + +R+ RA T V G
Sbjct: 1040 DRTKKSNKDSLREAVRTLLGYGYHLEAPDQDHASRAEVCSGTGERFRIFRAEKTYAVKAG 1099
Query: 355 AWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEE 414
WY+E + V G+ R+GWS +G D +F + + H+ E YG
Sbjct: 1100 RWYFEFEAVTAGD---MRVGWSRPGCQPDLELGSDDRAFAFDGFKAQRWHQG-NEHYG-R 1154
Query: 415 GYKEGDVIGFYINLPE 430
++ GDV+G +++ E
Sbjct: 1155 SWQAGDVVGCMVDMNE 1170
>sp|B0LPN4|RYR2_RAT Ryanodine receptor 2 OS=Rattus norvegicus GN=Ryr2 PE=1 SV=2
Length = 4953
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 246 ISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKEVSPEDTVLITPVPRFP 305
+S L PS K + +NVW R+G Q++V + P
Sbjct: 976 LSFIKLTPSQEAMVDKLAENAHNVWARDRIRQGWT---YGIQQDVKNRRNPRLVPYTLLD 1032
Query: 306 DKGDDNPE------MKICLSKVYKAE---KVELSDDRLTAGSTKGYRMVRA--TRGVVEG 354
D+ + + ++ L Y E + S + +G+ + +R+ RA T V G
Sbjct: 1033 DRTKKSNKDSLREAVRTLLGYGYHLEAPDQDHASRAEVCSGTGERFRIFRAEKTYAVKAG 1092
Query: 355 AWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEE 414
WY+E + V G+ R+GWS +G D +F + + H+ E YG
Sbjct: 1093 RWYFEFEAVTAGD---MRVGWSRPGCQPDLELGSDERAFAFDGFKAQRWHQG-NEHYG-R 1147
Query: 415 GYKEGDVIGFYINLPE 430
++ GDV+G +++ E
Sbjct: 1148 SWQAGDVVGCMVDMNE 1163
>sp|Q90WU3|DDX1_CHICK ATP-dependent RNA helicase DDX1 OS=Gallus gallus GN=DDX1 PE=1 SV=1
Length = 740
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 74/185 (40%), Gaps = 55/185 (29%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + RATRGV +G +YYE V+ + G R+GWST + L G
Sbjct: 116 VKEWHGCRATRGVTKGKYYYE---VSCHDQGLCRVGWSTMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDSYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYP----AASMYSLPNQPNCVVKFNFG-PD 513
+I F KNG G+AF+ +P ++++ N +KFNFG D
Sbjct: 202 --------QIKFSKNGKDLGLAFE-------FPPHIRNQALFAACVLKNAELKFNFGEED 246
Query: 514 FECFP 518
F+ FP
Sbjct: 247 FK-FP 250
>sp|Q641Y8|DDX1_RAT ATP-dependent RNA helicase DDX1 OS=Rattus norvegicus GN=Ddx1 PE=2
SV=1
Length = 740
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 69/183 (37%), Gaps = 51/183 (27%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + RATRG++ G YYE V+ + G R+GWST + L G
Sbjct: 116 VKEWHGCRATRGLLRGKHYYE---VSCHDQGLCRVGWSTMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFK---DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFE 515
+ F KNG G+AF+ + +PA + N +KFNFG +
Sbjct: 202 --------HVKFSKNGKDLGLAFEIPAHIKNQALFPACVL------KNAELKFNFGEEEF 247
Query: 516 CFP 518
FP
Sbjct: 248 KFP 250
>sp|Q5XH91|DDX1_XENTR ATP-dependent RNA helicase DDX1 OS=Xenopus tropicalis GN=ddx1 PE=2
SV=1
Length = 740
Score = 39.3 bits (90), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + R+TRGV +G +YYE V+ + G R+GWST + L G
Sbjct: 116 IKEWHGCRSTRGVNKGKYYYE---VSCHDQGLCRVGWSTLQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEG 431
G K H + YGEE + D IG YI++ G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYIDIDNG 201
>sp|Q4R7L5|DDX1_MACFA ATP-dependent RNA helicase DDX1 OS=Macaca fascicularis GN=DDX1 PE=2
SV=1
Length = 740
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 51/183 (27%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + RAT+G+++G YYE V+ + G R+GWST + L G
Sbjct: 116 VKEWHGCRATKGLMKGKHYYE---VSCHDQGLCRVGWSTMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFK---DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFE 515
+ F KNG G+AF+ + +PA + N +KFNFG +
Sbjct: 202 --------HVKFSKNGKDLGLAFEIPPHMKNQALFPACVL------KNAELKFNFGEEEF 247
Query: 516 CFP 518
FP
Sbjct: 248 KFP 250
>sp|Q91VR5|DDX1_MOUSE ATP-dependent RNA helicase DDX1 OS=Mus musculus GN=Ddx1 PE=1 SV=1
Length = 740
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 69/183 (37%), Gaps = 51/183 (27%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + R TRG+++G YYE V+ + G R+GWST + L G
Sbjct: 116 VKEWHGCRGTRGLLKGKHYYE---VSCHDQGLCRVGWSTMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFK---DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFE 515
+ F KNG G+AF+ + +PA + N +KFNFG +
Sbjct: 202 --------HVKFSKNGKDLGLAFEIPAHIKNQALFPACVL------KNAELKFNFGEEEF 247
Query: 516 CFP 518
FP
Sbjct: 248 KFP 250
>sp|Q92499|DDX1_HUMAN ATP-dependent RNA helicase DDX1 OS=Homo sapiens GN=DDX1 PE=1 SV=2
Length = 740
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 51/183 (27%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + RAT+G+++G YYE V+ + G R+GWST + L G
Sbjct: 116 VKEWHGCRATKGLMKGKHYYE---VSCHDQGLCRVGWSTMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFK---DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFE 515
+ F KNG G+AF+ + +PA + N +KFNFG +
Sbjct: 202 --------HVKFSKNGKDLGLAFEIPPHMKNQALFPACVL------KNAELKFNFGEEEF 247
Query: 516 CFP 518
FP
Sbjct: 248 KFP 250
>sp|Q5NVJ8|DDX1_PONAB ATP-dependent RNA helicase DDX1 OS=Pongo abelii GN=DDX1 PE=2 SV=1
Length = 740
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 70/183 (38%), Gaps = 51/183 (27%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + RAT+G+++G YYE V+ + G R+GWST + L G
Sbjct: 116 VKEWHGCRATKGLMKGKHYYE---VSCHDQGLCRVGWSTMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFK---DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFE 515
+ F KNG G+AF+ + +PA + N +KFNFG +
Sbjct: 202 --------HVKFSKNGKDLGLAFEIPPHMKNQALFPACVL------KNAELKFNFGEEEF 247
Query: 516 CFP 518
FP
Sbjct: 248 KFP 250
>sp|O94248|MDN1_SCHPO Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mdn1 PE=1 SV=1
Length = 4717
Score = 38.1 bits (87), Expect = 0.18, Method: Composition-based stats.
Identities = 58/242 (23%), Positives = 94/242 (38%), Gaps = 34/242 (14%)
Query: 2 DSLQASYREDDDEEEPPQLPSTPPQND----GAQETQAETDDVAKEPEPSPKADAVREPE 57
+ + + EDDD EE T Q+D A+E +++ + V K+ + + E
Sbjct: 3921 EDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKD-SVVSENENSDSEE 3979
Query: 58 SLDDSAEEANHEPLPQPEPMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSDSITENAA 117
D EE N P + +S+ E EP + LE E + + E +A
Sbjct: 3980 ENQDLDEEVNDIP-----EDLSNSLNEKLWDEP--NEEDLLETEQKSN--------EQSA 4024
Query: 118 AQGREPPNDVAREALPEAEPMVNDSVSEEEAEEAETHNGAVQEAQPDI-----QPEPMIS 172
A +D+ + D +E+ EE G E QPDI QP P
Sbjct: 4025 ANNE---SDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 4081
Query: 173 ESVSEDDPTASDDTQKSPKRDS------IAAQNDDVEEEDDEDDDPPPKKQKPLSSLTTL 226
+ + + D+ + +DS + A +++ EE D E D+P + PL TL
Sbjct: 4082 DHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEENNTL 4141
Query: 227 HE 228
E
Sbjct: 4142 DE 4143
>sp|A2VD92|DDX1_XENLA ATP-dependent RNA helicase DDX1 OS=Xenopus laevis GN=ddx1 PE=2 SV=1
Length = 740
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + R+TRGV +G +YYE V+ + G R+GWST L G
Sbjct: 116 IKEWHGCRSTRGVNKGKYYYE---VSCHDQGLCRVGWSTLSASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINL 428
G K H + YGEE + D IG Y+++
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDI 198
>sp|Q0IIK5|DDX1_BOVIN ATP-dependent RNA helicase DDX1 OS=Bos taurus GN=DDX1 PE=2 SV=1
Length = 740
Score = 36.6 bits (83), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 69/183 (37%), Gaps = 51/183 (27%)
Query: 339 TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDI 398
K + RAT+G+ +G YYE V+ + G R+GWS+ + L G
Sbjct: 116 VKEWHGCRATKGLTKGKHYYE---VSCHDQGLCRVGWSSMQASLDLGTDKFGFG---FGG 169
Query: 399 DGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458
G K H + YGEE + D IG Y+++ +G
Sbjct: 170 TGKKSHNKQFDNYGEE-FTMHDTIGCYLDIDKG--------------------------- 201
Query: 459 PPKVVPGSEISFFKNGVCQGVAFK---DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFE 515
+ F KNG G+AF+ + +PA + N +KFNFG +
Sbjct: 202 --------HVKFSKNGKDLGLAFEIPPHMKNQALFPACVL------KNAELKFNFGEEEF 247
Query: 516 CFP 518
FP
Sbjct: 248 KFP 250
>sp|Q8C1D8|IWS1_MOUSE Protein IWS1 homolog OS=Mus musculus GN=Iws1 PE=1 SV=1
Length = 766
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 83 TENDAQEPASGNDVALEVEAQRDPVVSDSITEN-----AAAQGREPPNDVAREALPEAEP 137
+END EP++ N E E P SDS +E A+ EP N ++ E E
Sbjct: 69 SEND--EPSNANASDSESEELHRPKDSDSDSEEHAESPASDSENEPVNQHGSDS--ENEE 124
Query: 138 MVNDSVSEEEAEEAETHNGAVQEAQPDIQPEPMISESVSED--DPTASDDTQKSP 190
++N S+ E EE H + EA+ +QP+ +SES SED P ASD + P
Sbjct: 125 LLNGHASDSEKEEVSKHAASDSEAEDTLQPQ--VSESDSEDPPRPQASDSENEEP 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.128 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,672,413
Number of Sequences: 539616
Number of extensions: 11859608
Number of successful extensions: 58157
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 2492
Number of HSP's that attempted gapping in prelim test: 43098
Number of HSP's gapped (non-prelim): 10299
length of query: 552
length of database: 191,569,459
effective HSP length: 123
effective length of query: 429
effective length of database: 125,196,691
effective search space: 53709380439
effective search space used: 53709380439
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 64 (29.3 bits)