Query 035919
Match_columns 552
No_of_seqs 222 out of 1177
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035919.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035919hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2626 Histone H3 (Lys4) meth 100.0 9.5E-57 2.1E-61 476.1 16.1 368 169-544 143-528 (544)
2 KOG0349 Putative DEAD-box RNA 99.9 1.5E-26 3.3E-31 243.4 11.2 157 316-520 89-252 (725)
3 smart00449 SPRY Domain in SPla 99.9 1.6E-24 3.4E-29 187.0 15.6 116 353-512 1-121 (122)
4 PF00622 SPRY: SPRY domain; I 99.9 4.6E-24 1E-28 182.9 15.3 117 353-513 1-123 (124)
5 KOG3953 SOCS box protein SSB-1 99.8 5.6E-19 1.2E-23 174.1 13.8 160 316-514 27-201 (242)
6 KOG4030 Uncharacterized conser 99.8 1.6E-18 3.5E-23 162.9 16.0 157 315-522 28-188 (197)
7 KOG2243 Ca2+ release channel ( 99.6 7.5E-16 1.6E-20 174.2 10.8 133 341-518 1091-1235(5019)
8 KOG4367 Predicted Zn-finger pr 99.6 9.8E-15 2.1E-19 154.2 14.5 152 317-512 536-694 (699)
9 KOG1477 SPRY domain-containing 99.3 3.7E-12 8.1E-17 137.4 10.0 184 312-536 28-235 (469)
10 KOG2243 Ca2+ release channel ( 99.1 1.8E-11 3.8E-16 139.8 3.5 136 342-520 658-823 (5019)
11 KOG1477 SPRY domain-containing 98.0 1.7E-06 3.6E-11 94.2 0.5 92 393-525 1-94 (469)
12 KOG2242 Scaffold/matrix specif 96.4 0.00086 1.9E-08 74.8 0.5 182 297-522 20-224 (558)
13 PF07177 Neuralized: Neuralize 94.3 0.22 4.7E-06 41.6 7.3 57 321-378 7-67 (69)
14 smart00588 NEUZ domain in neur 93.6 1.2 2.7E-05 40.8 11.7 58 321-379 7-69 (123)
15 KOG4625 Notch signaling protei 68.0 16 0.00035 41.8 7.5 56 323-379 108-167 (595)
16 KOG2242 Scaffold/matrix specif 58.9 15 0.00032 42.0 5.2 88 341-431 367-462 (558)
17 PF13765 PRY: SPRY-associated 42.8 45 0.00096 25.7 4.1 24 316-339 1-24 (49)
18 KOG4625 Notch signaling protei 41.8 1.1E+02 0.0024 35.4 8.5 57 322-379 299-360 (595)
19 PF14041 Lipoprotein_21: LppP/ 27.3 1E+02 0.0023 26.6 4.3 38 466-511 26-63 (89)
20 cd03482 MutL_Trans_MutL MutL_T 24.4 59 0.0013 29.5 2.4 46 466-513 44-98 (123)
21 smart00589 PRY associated with 23.6 99 0.0022 23.0 3.1 25 315-339 3-27 (52)
22 cd00782 MutL_Trans MutL_Trans: 23.4 66 0.0014 28.4 2.5 45 467-513 45-98 (122)
23 PF01052 SpoA: Surface present 20.2 1.7E+02 0.0036 24.1 4.0 16 415-430 28-43 (77)
No 1
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=9.5e-57 Score=476.09 Aligned_cols=368 Identities=36% Similarity=0.602 Sum_probs=314.6
Q ss_pred CCccCCCCCCCCCCC-CCCCCCCC-cchhhccCCCCcC---CCCCCCCCCCCCCCCCCCccchhHHhhhhhcccCccccc
Q 035919 169 PMISESVSEDDPTAS-DDTQKSPK-RDSIAAQNDDVEE---EDDEDDDPPPKKQKPLSSLTTLHEQQALEQQQQTPVTNN 243 (552)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (552)
..++++|+.+.+|+. -+..+.+. ....++||.+-.+ ++..+..++.++.||+..+++.......+.....+ .+.
T Consensus 143 ~~~~~~~~ke~~t~~~~~~~~~~~~~~al~~~nl~~~~p~~~~~~~~~~~~~~~~q~~~~p~~~~~k~r~a~~~~p-~~~ 221 (544)
T KOG2626|consen 143 TNLSDTLSKERDTYFEVEEHRDPGKLFALANQNLSNIGPSYDEVQSGIGAKMHKKQVDETPPLSSGKCREASREAP-SEA 221 (544)
T ss_pred hhhhhhhhhcccceeEEeccCCCcchhhhcccchhhcCccccchhhcccccccccccCCCCCcccccccccccccc-CCC
Confidence 356778998888776 55555665 7778888885543 33345667777777899999887655555666666 366
Q ss_pred cccccccccCCccccccccccccCCccccccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCceEEeCCCcc
Q 035919 244 NSISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKEVSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYK 323 (552)
Q Consensus 244 ~~~~~~~~~~~~~~~~~k~~k~~~~vW~~~~~rk~~kk~~~~~~~~~~~ed~~lisP~P~~~~~~dd~p~~~V~LS~~~k 323 (552)
.+...++...+. +...++|+++++||.....+|.++|-.-+-+.+...++..++.|+|.+.+.....+...|+|++.++
T Consensus 222 ~v~g~~~r~~sd-~~~s~~k~p~~~v~~~~p~~k~~~~~~l~e~~P~~p~~~~~ak~iP~~~yr~l~~~~~tv~l~~hdr 300 (544)
T KOG2626|consen 222 PVTGKKIKLISD-AKESIHKPPNGCVPIEHPFSKDGYRYILAEPDPSAPEDIKFAKPIPGFLYRALLSPMDTVNLSWHDR 300 (544)
T ss_pred Ccccccceehhh-cccccccCCCCCccccCCCCCCCceeeEeccCCCCcccccccccCCcchhhhhcCchhhhhhhhhcc
Confidence 666666666665 5567788889999999999999999887777666677777899999999998888888999999999
Q ss_pred CCcEEEcCCCcEEEeCCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEEEEeCCCcEE
Q 035919 324 AEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKV 403 (552)
Q Consensus 324 s~~I~LS~DgLTVtg~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyGYrg~DGkk~ 403 (552)
++++.||.|+|++++.+||+||||+|||..|.|||||+|..+..++|+||||++..++|+++||||.+|||||+.+|++|
T Consensus 301 A~ql~Is~drlt~tgeKGy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkfsY~wRdk~GtKf 380 (544)
T KOG2626|consen 301 AEQLKISEDRLTATGEKGYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKFSYGWRDKKGTKF 380 (544)
T ss_pred cccccccccceeeecccceeeeeecccccccceeEEEEeecCCCccceeeeccccccccccccccccccccccccCCcch
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred eCCcccccCCCCCCCCCEEEEEEECCCCCCC---CC---CCCCccccccccceecCCCC---CCCCCCCCCcEEEEEECC
Q 035919 404 HKALREKYGEEGYKEGDVIGFYINLPEGGQY---AP---KPPHFVWYKGQRYVCAPDSK---EDPPKVVPGSEISFFKNG 474 (552)
Q Consensus 404 Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~---~p---k~~~Li~~kg~l~l~~~~~~---e~p~~~~~GSeI~FTKNG 474 (552)
|.++++.|-. +|++||||||+|+|+.+... .| |...||.||+.+|+++++.. +++....+||+|.|+|||
T Consensus 381 h~s~gk~Y~~-gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~pgS~I~f~KNG 459 (544)
T KOG2626|consen 381 HESLGKHYSD-GFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIKPGSEIEFFKNG 459 (544)
T ss_pred hhhhhhhhhh-hccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccCCCceEEEeecc
Confidence 9999999996 99999999999999988652 12 33458999999999998875 667788999999999999
Q ss_pred eEeeeceeecC-CCcEEEEEEEccCCCCCCcEEEEECCCCCccCCCCCCCCC--CCCC-cccCCCCcccceeec
Q 035919 475 VCQGVAFKDLY-GGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERP--VPSP-MAEVPYHGFDSRVEN 544 (552)
Q Consensus 475 k~LGvAFkdI~-gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~Ppdf~~rP--~p~P-m~e~p~~~~~~~~~~ 544 (552)
++||+||+||+ .|.||||||||+ +|+|+||||+.|+|+|.+++.++ |... |.++++|.+...++.
T Consensus 460 ~~qG~Ay~ni~~~G~YyPaIS~yk-----s~tv~~nfGP~F~~~p~~lg~~~~~m~~~~~eqi~E~~l~DiLy~ 528 (544)
T KOG2626|consen 460 VSQGVAYENIYKAGAYYPAISIYK-----SCTVKFNFGPQFRYPPCVLGNRAVGMSDRYKEQIAEDTLADILYE 528 (544)
T ss_pred cchhhhhhhhhccccccceeeecc-----cceEEEeccccccCCccccCCCcccccchhhhhHHHHHHHHHHHH
Confidence 99999999999 589999999997 89999999999999999999998 6666 778888887776554
No 2
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=1.5e-26 Score=243.37 Aligned_cols=157 Identities=32% Similarity=0.588 Sum_probs=142.5
Q ss_pred EEeCCCccCCcEEEcCCCcEEEeC--CCcceEEecccee-cCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCe
Q 035919 316 ICLSKVYKAEKVELSDDRLTAGST--KGYRMVRATRGVV-EGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNS 392 (552)
Q Consensus 316 V~LS~~~ks~~I~LS~DgLTVtg~--kGyrsVRAT~GVs-sGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~S 392 (552)
+.+|+.+++..+.|..|+|.+.+. +-|.++|||.|+. .|+|||||+|.. .|.+||||+|-.++|+ +|.+..+
T Consensus 89 w~mn~~Drg~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd---~GLCRVGWsT~qasLd--lGt~~~g 163 (725)
T KOG0349|consen 89 WKMNKQDRGLALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITD---KGLCRVGWSTLQASLD--LGTGLDG 163 (725)
T ss_pred cccCccccCceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEecc---Cceeeechhhcccccc--cCccccc
Confidence 457889999999999999999876 7899999999997 999999999987 6899999999999999 8999999
Q ss_pred EEEEeCCCcEEeCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEE
Q 035919 393 FGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFK 472 (552)
Q Consensus 393 yGYrg~DGkk~Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTK 472 (552)
|||.+ .|++.|+.....||. .|...|||||+||++++ +|+|+|
T Consensus 164 FGfGG-TGkKS~nkqFDdYGe-~Ft~~DvIGCyLDld~~-----------------------------------~v~fsK 206 (725)
T KOG0349|consen 164 FGFGG-TGKKSTNKQFDDYGE-PFTLNDVIGCYLDLDSR-----------------------------------TVWFSK 206 (725)
T ss_pred cccCc-cCccccccccccccC-cccccceeeEEEeccCc-----------------------------------eEEEec
Confidence 99987 999999999999998 99999999999999997 799999
Q ss_pred CCeEeeeceee---cCCCcEEEEEEEccCCCCCCcEEEEECCCC-CccCCCC
Q 035919 473 NGVCQGVAFKD---LYGGRYYPAASMYSLPNQPNCVVKFNFGPD-FECFPDD 520 (552)
Q Consensus 473 NGk~LGvAFkd---I~gG~LYPAVSL~tlp~~~g~~VrfNFGp~-F~F~Ppd 520 (552)
||+.+|.||+- +....|||||-+. ++.+.||||.. |+|+|.+
T Consensus 207 NG~~lg~AF~ip~~~kn~~lfPAvvlk------Nael~fNFG~~~FKfpPgn 252 (725)
T KOG0349|consen 207 NGEQLGAAFSIPVKYKNSNLFPAVVLK------NAELSFNFGSQPFKFPPGN 252 (725)
T ss_pred CccccceeEEcChhhcccccchheeec------cceEEEecCCCccccCCCC
Confidence 99999999972 2346799999875 79999999984 9999863
No 3
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.92 E-value=1.6e-24 Score=187.02 Aligned_cols=116 Identities=42% Similarity=0.761 Sum_probs=103.7
Q ss_pred cCeEEEEEEEEEeCCCCcEEEEEecCCCC--CCCCCCCCCCeEEEEeCCCcEEeCCcccccCCCCCCC-CCEEEEEEECC
Q 035919 353 EGAWYYEIKVVALGETGHTRLGWSTEKGD--LQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKE-GDVIGFYINLP 429 (552)
Q Consensus 353 sGkwYFEVkIvs~G~sG~IrIGwATr~a~--LqapVG~D~~SyGYrg~DGkk~Hng~~e~YG~~~f~e-GDVIGCgIDL~ 429 (552)
+|+|||||+|.. +++++||||+.... ....+|++.+||+|+..+|.++|+.....|+. .+.. ||||||+||++
T Consensus 1 sG~~YwEV~v~~---~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~-~~~~~gd~iGv~lD~~ 76 (122)
T smart00449 1 SGRHYFEVEIFD---GGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGL-PLQEPGDVIGCFLDLE 76 (122)
T ss_pred CCcEEEEEEEcC---CCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCc-cccCCCCEEEEEEECC
Confidence 599999999987 67999999999887 57789999999999998889999876667886 8887 99999999999
Q ss_pred CCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECCeEe-eeceeecC-CCcEEEEEEEccCCCCCCcEEE
Q 035919 430 EGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQ-GVAFKDLY-GGRYYPAASMYSLPNQPNCVVK 507 (552)
Q Consensus 430 ~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNGk~L-GvAFkdI~-gG~LYPAVSL~tlp~~~g~~Vr 507 (552)
.+ +|+|++||+.+ +.+|.++. .+.|||+|++.. .+.++
T Consensus 77 ~g-----------------------------------~l~F~~ng~~~~~~~f~~~~~~~~l~P~~~~~~-----~~~~~ 116 (122)
T smart00449 77 AG-----------------------------------TISFYKNGKYLHGLAFFDVKFSGPLYPAVSLGS-----GCSVR 116 (122)
T ss_pred CC-----------------------------------EEEEEECCCEeeeEEEeccCCCCcEeeEEEcCC-----CCEEE
Confidence 98 79999999999 89998875 468999999986 55899
Q ss_pred EECCC
Q 035919 508 FNFGP 512 (552)
Q Consensus 508 fNFGp 512 (552)
+|||+
T Consensus 117 ~n~g~ 121 (122)
T smart00449 117 LNFGP 121 (122)
T ss_pred EEecC
Confidence 99996
No 4
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.92 E-value=4.6e-24 Score=182.89 Aligned_cols=117 Identities=37% Similarity=0.606 Sum_probs=103.4
Q ss_pred cCeEEEEEEEEEeCCCCcEEEEEecCCC---CCCCCCCCCCCeEEEEeCCCcEEeCCcccccCCCCCCC-CCEEEEEEEC
Q 035919 353 EGAWYYEIKVVALGETGHTRLGWSTEKG---DLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKE-GDVIGFYINL 428 (552)
Q Consensus 353 sGkwYFEVkIvs~G~sG~IrIGwATr~a---~LqapVG~D~~SyGYrg~DGkk~Hng~~e~YG~~~f~e-GDVIGCgIDL 428 (552)
+|+|||||+|.... .++|||++... .....+|++..||+|++.+|.++|+.....++. .+.. ||||||+||+
T Consensus 1 sG~~YwEV~v~~~~---~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~dvIG~~lD~ 76 (124)
T PF00622_consen 1 SGKHYWEVEVDSGG---SISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGS-PFQEPGDVIGCGLDL 76 (124)
T ss_dssp SSEEEEEEEETGGC---TEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSC-TSSTTTSEEEEEEET
T ss_pred CcCEEEEEEEecCc---CEEEEEeECccccCCccccCCccccceeeeccccccceeeccccccc-ccccCCcEEEEEEee
Confidence 59999999998843 49999999998 556789999999999998779999887788887 8998 9999999999
Q ss_pred CCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECCeEee-eceeecCC-CcEEEEEEEccCCCCCCcEE
Q 035919 429 PEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQG-VAFKDLYG-GRYYPAASMYSLPNQPNCVV 506 (552)
Q Consensus 429 ~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNGk~LG-vAFkdI~g-G~LYPAVSL~tlp~~~g~~V 506 (552)
..+ +|+||+||+.++ .+|+++.. ..|||+|++.. +++|
T Consensus 77 ~~g-----------------------------------~l~F~~ng~~~~~~~f~~~~~~~~l~P~v~~~~-----~~~~ 116 (124)
T PF00622_consen 77 DNG-----------------------------------ELSFYKNGKFLGIYAFTDIDFSEPLYPAVSLGG-----GQSV 116 (124)
T ss_dssp TTT-----------------------------------EEEEEETTEEEEEEEEESCTTSSSBEEEEEEES-----TSEE
T ss_pred ccc-----------------------------------EEEEEECCccceeEEEECCCCCCcEEEEEEecC-----CCEE
Confidence 987 799999999999 99998875 59999999996 7999
Q ss_pred EEECCCC
Q 035919 507 KFNFGPD 513 (552)
Q Consensus 507 rfNFGp~ 513 (552)
++|||++
T Consensus 117 ~~n~g~~ 123 (124)
T PF00622_consen 117 ELNFGQR 123 (124)
T ss_dssp EEEEEC-
T ss_pred EEEeCCC
Confidence 9999974
No 5
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.80 E-value=5.6e-19 Score=174.05 Aligned_cols=160 Identities=25% Similarity=0.317 Sum_probs=137.9
Q ss_pred EEeCCCccCCcEEEcCC-CcEEEeC---CCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCC-----CCC
Q 035919 316 ICLSKVYKAEKVELSDD-RLTAGST---KGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQ-----APV 386 (552)
Q Consensus 316 V~LS~~~ks~~I~LS~D-gLTVtg~---kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~Lq-----apV 386 (552)
+.||+.+++.++.+..+ +++++.+ .....+|+.+++..|.++|||.+..-.-..|+.||++|..++++ +++
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 89999999999988655 5999976 34667999999999999999999874445699999999999986 589
Q ss_pred CCCCCeEEEEeCCCcEEeCC-cccccC----CCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCC
Q 035919 387 GYDGNSFGYRDIDGSKVHKA-LREKYG----EEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPK 461 (552)
Q Consensus 387 G~D~~SyGYrg~DGkk~Hng-~~e~YG----~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~ 461 (552)
|.+..||||.-.++.++|+| ....|. .+.|..+|.|+|+||++.|
T Consensus 107 Gs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~eg------------------------------ 156 (242)
T KOG3953|consen 107 GSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEG------------------------------ 156 (242)
T ss_pred CCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccc------------------------------
Confidence 99999999999889999997 223342 2479999999999999998
Q ss_pred CCCCcEEEEEECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEEC-CCCC
Q 035919 462 VVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNF-GPDF 514 (552)
Q Consensus 462 ~~~GSeI~FTKNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNF-Gp~F 514 (552)
+++|.+||++||+||+++++..+||+||... .+|.|++.+ |..+
T Consensus 157 -----tl~F~~~~e~LGvAFRgL~~~~LYP~Vsav~----g~~Evtm~Ylg~~~ 201 (242)
T KOG3953|consen 157 -----TLSFAADGEYLGVAFRGLKDKKLYPAVSAVW----GHCEVTMKYLGTLD 201 (242)
T ss_pred -----eEEEEECCeEEeeeecCCCCCcceeeeeehh----cceeEEEEEeCCcC
Confidence 6999999999999999999889999999987 689999876 4445
No 6
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.79 E-value=1.6e-18 Score=162.89 Aligned_cols=157 Identities=26% Similarity=0.425 Sum_probs=133.0
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeCCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCC-CCCCCCCeE
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQA-PVGYDGNSF 393 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~Lqa-pVG~D~~Sy 393 (552)
.|.||..+++..+.|...++.+++..| +.|+.++...|-||||+|.+ +|.|.||++++..+++. +.|.|..||
T Consensus 28 ~V~LD~~hMG~dVvilk~g~RicGtGG---~lAtaPlvQnKsYFevkiQ~---tG~WgiGlat~q~~l~~~p~g~d~~sw 101 (197)
T KOG4030|consen 28 TVRLDVGHMGKDVVILKEGERICGTGG---ALATAPLVQNKSYFEVKIQQ---TGTWGIGLATKQSPLDKVPGGCDEKSW 101 (197)
T ss_pred cEEeehhccCCcEEEEecCcEEeccCc---eeeeeeeecccceEEEEEee---cceeeeeeeeccCccccCCCCCcceeE
Confidence 489999999999999999999998776 88999999999999999998 68899999999999976 568999999
Q ss_pred EEEeCCCcEEeCCccc-ccCCCC-CCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEE
Q 035919 394 GYRDIDGSKVHKALRE-KYGEEG-YKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFF 471 (552)
Q Consensus 394 GYrg~DGkk~Hng~~e-~YG~~~-f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FT 471 (552)
+.++ ||.+.|+.... ...... -.+|||||+.+|- .+|.||
T Consensus 102 ~~r~-dga~~hnnee~~r~pa~~~p~EGDvVGvayDH-------------------------------------VELnfY 143 (197)
T KOG4030|consen 102 GIRD-DGAIAHNNEEVARMPATVFPEEGDVVGVAYDH-------------------------------------VELNFY 143 (197)
T ss_pred EEcc-CCchhcccHHHhcCccccCCccCcEEEEEeee-------------------------------------EEEEEE
Confidence 9997 99999986321 111101 2689999999885 379999
Q ss_pred ECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECCCCCccCC-CCCC
Q 035919 472 KNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFP-DDFG 522 (552)
Q Consensus 472 KNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~P-pdf~ 522 (552)
+||+.+...|+++. |.+||+|.... ++.+.+.|- +|...| ++|.
T Consensus 144 ~NGKn~e~p~~gvR-G~vyPvvYVdd-----sAILD~~f~-nF~h~PPpGFe 188 (197)
T KOG4030|consen 144 VNGKNVEDPITGVR-GPVYPVVYVDD-----SAILDLKFK-NFTHAPPPGFE 188 (197)
T ss_pred EcCceecccccccc-cceeeEEEeCC-----ceEEEEEec-ccccCCCCChh
Confidence 99999999999997 59999999987 888999984 677664 5664
No 7
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.63 E-value=7.5e-16 Score=174.18 Aligned_cols=133 Identities=29% Similarity=0.621 Sum_probs=114.1
Q ss_pred CcceEEe--ccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEEEEeCCCcEEeCCcccccCCCCCCC
Q 035919 341 GYRMVRA--TRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKE 418 (552)
Q Consensus 341 GyrsVRA--T~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyGYrg~DGkk~Hng~~e~YG~~~f~e 418 (552)
.+|..|+ +++|..|+||||++.+. .|.+||||++..+..+.-+|.|...|+|.+..|..||.|. ..||. .|..
T Consensus 1091 k~r~fr~eksyavkagkwyfefe~vt---~gdmrvgwarpgc~pd~elgadd~af~fdg~k~qrwhqg~-~~~gr-swq~ 1165 (5019)
T KOG2243|consen 1091 KFRFFRAEKSYAVKAGKWYFEFETVT---AGDMRVGWARPGCQPDQELGADDQAFAFDGFKAQRWHQGN-EHFGR-SWQA 1165 (5019)
T ss_pred eeEEEeeehhheeeccceEEEEEEee---ccceeecccCCCCCcchhhCCccceeeeccchhhhhhccc-ccccc-ccCC
Confidence 3677777 67889999999999998 4679999999999999999999999999999999999884 45997 9999
Q ss_pred CCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECCeEee------eceeecC-CCcEEE
Q 035919 419 GDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQG------VAFKDLY-GGRYYP 491 (552)
Q Consensus 419 GDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNGk~LG------vAFkdI~-gG~LYP 491 (552)
||||||.||+++. .+.||+||..+= .||.+.. +..|.|
T Consensus 1166 gdvvgcmi~l~d~-----------------------------------sm~ftlngeili~~~gselaf~d~di~~gfip 1210 (5019)
T KOG2243|consen 1166 GDVVGCMIDLDDA-----------------------------------SMIFTLNGEILIDDKGSELAFADFDIEDGFIP 1210 (5019)
T ss_pred CCeEEEEEecccc-----------------------------------eEEEEEcCeEEEcCCCCeeeeccccccCCcee
Confidence 9999999999886 588999999872 4788754 457999
Q ss_pred EEEEccCCCCCCcEEEEECCCC---CccCC
Q 035919 492 AASMYSLPNQPNCVVKFNFGPD---FECFP 518 (552)
Q Consensus 492 AVSL~tlp~~~g~~VrfNFGp~---F~F~P 518 (552)
.++++- ...-++|||.+ |+|+.
T Consensus 1211 ic~lg~-----aqigrmn~g~d~st~k~~t 1235 (5019)
T KOG2243|consen 1211 ICCLGL-----AQIGRMNFGKDASTFKFFT 1235 (5019)
T ss_pred eeehhh-----HhhcccccCCcccceeeee
Confidence 998875 56678999995 88874
No 8
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.60 E-value=9.8e-15 Score=154.18 Aligned_cols=152 Identities=22% Similarity=0.361 Sum_probs=127.9
Q ss_pred EeCCCccCCcEEEcCCCcEEEeC-CCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEEE
Q 035919 317 CLSKVYKAEKVELSDDRLTAGST-KGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGY 395 (552)
Q Consensus 317 ~LS~~~ks~~I~LS~DgLTVtg~-kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyGY 395 (552)
.|++.-....+.||++.+|+++. ..||++.+..+++.|.+||||+|........+.||++......+.++|-|.++|+.
T Consensus 536 qlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsdivigvaqpavnrnvmlgkdlhgwsm 615 (699)
T KOG4367|consen 536 QLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRNVMLGKDLHGWSM 615 (699)
T ss_pred eccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCCceEEecchhhhhceeecccccceeE
Confidence 44455556689999999999976 57999999999999999999999998777889999999988888999999999998
Q ss_pred EeCCC-cEE--eCCc--ccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEE
Q 035919 396 RDIDG-SKV--HKAL--REKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISF 470 (552)
Q Consensus 396 rg~DG-kk~--Hng~--~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~F 470 (552)
.- || +.| ||.. .+-.| ++..|-|||+.||++.| ++.|
T Consensus 616 yv-dgerswylhnethhnrvlg--gvtrgtvigvrldcdrg-----------------------------------tmey 657 (699)
T KOG4367|consen 616 YV-DGERSWYLHNETHHNRVLG--GVTRGTVIGVRLDCDRG-----------------------------------TMEY 657 (699)
T ss_pred EE-cCcceeEEecccccccccc--ccccccEEEEEEeccCC-----------------------------------ceEE
Confidence 76 55 444 5542 12234 68999999999999988 5889
Q ss_pred EECCeEee-eceeecCCCcEEEEEEEccCCCCCCcEEEEECCC
Q 035919 471 FKNGVCQG-VAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGP 512 (552)
Q Consensus 471 TKNGk~LG-vAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp 512 (552)
|+|.+-.| .||.|+ .|-||||+|+.. +..|++.-|.
T Consensus 658 tvndrqddsmaftnm-rglyypafsvna-----nssitvhtgl 694 (699)
T KOG4367|consen 658 TVNDRQDDSMAFTNM-RGLYYPAFSVNA-----NSSITVHTGL 694 (699)
T ss_pred EeccccCCceeeecc-cceeeeeeEecc-----CceEEEecCC
Confidence 99999776 699999 579999999986 8899998875
No 9
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=99.33 E-value=3.7e-12 Score=137.36 Aligned_cols=184 Identities=27% Similarity=0.380 Sum_probs=144.3
Q ss_pred CCceEEeCCCccCCcEEE-cCCCcEEEeC------CCcceEEeccce--ecCeEEEEEEEEEeCCCCcEEEEEecCCCCC
Q 035919 312 PEMKICLSKVYKAEKVEL-SDDRLTAGST------KGYRMVRATRGV--VEGAWYYEIKVVALGETGHTRLGWSTEKGDL 382 (552)
Q Consensus 312 p~~~V~LS~~~ks~~I~L-S~DgLTVtg~------kGyrsVRAT~GV--ssGkwYFEVkIvs~G~sG~IrIGwATr~a~L 382 (552)
..+.++|+..+....+.. +.|...+..+ ....++.+...+ ..|.+||||.|...+..+.+.||.......+
T Consensus 28 d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~ 107 (469)
T KOG1477|consen 28 DVIPCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSI 107 (469)
T ss_pred ccccceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEeccccc
Confidence 344789999998887655 5555444422 123455666655 5789999999998888899999999999999
Q ss_pred CCCCCCCCCeEEEEeCCCcEEeCC--cccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCC
Q 035919 383 QAPVGYDGNSFGYRDIDGSKVHKA--LREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPP 460 (552)
Q Consensus 383 qapVG~D~~SyGYrg~DGkk~Hng--~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~ 460 (552)
....||..+||+|++.+|.++|.+ .+..|++ .|..||.|||+++....
T Consensus 108 ~~~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~-~~~~~D~ig~~~~~~~q----------------------------- 157 (469)
T KOG1477|consen 108 IESEGYTMNSLGYHGNSGLLDNGGAELGEEFGP-TFTTGDEIGCGINEITQ----------------------------- 157 (469)
T ss_pred ccccchhhhhhcccCCchhhhhhhhhhchhhcC-CCCccceeeeccchhhh-----------------------------
Confidence 999999999999999999999943 4678997 99999999999999875
Q ss_pred CCCCCcEEEEEECCeEeeeceeecCCCcEEEE----EEEccCCCCCCcEEEEECC-C-CCccCCCC-------CCCCCCC
Q 035919 461 KVVPGSEISFFKNGVCQGVAFKDLYGGRYYPA----ASMYSLPNQPNCVVKFNFG-P-DFECFPDD-------FGERPVP 527 (552)
Q Consensus 461 ~~~~GSeI~FTKNGk~LGvAFkdI~gG~LYPA----VSL~tlp~~~g~~VrfNFG-p-~F~F~Ppd-------f~~rP~p 527 (552)
+|+|++||..+|.+++.+.. .+||. +.+.. ++..|.+||| . .|.|+... ...+|.+
T Consensus 158 ------~i~~t~~g~~~~~~~~~~~~-~~~~~~~n~~~~~s----~~~~I~~~~g~~~~~~fd~~~~~~~~~~~~~~~~~ 226 (469)
T KOG1477|consen 158 ------EIFFTKNGTEVGEIIKPLSP-DLLEENGNLAWLFS----PNEEVEVNFGLEEEFRFDFSGYPKSQSSLPVSPIP 226 (469)
T ss_pred ------eeeeccCccccccccccccc-cccccccceeeEec----cCceeeeeecCCCceeecccccccccccccccccc
Confidence 79999999999999999875 45555 66665 6899999999 4 37776544 3355556
Q ss_pred CCcccCCCC
Q 035919 528 SPMAEVPYH 536 (552)
Q Consensus 528 ~Pm~e~p~~ 536 (552)
.++.+.++.
T Consensus 227 ~~~~~~s~~ 235 (469)
T KOG1477|consen 227 SKIFEDSYP 235 (469)
T ss_pred ccccccccc
Confidence 666666665
No 10
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.14 E-value=1.8e-11 Score=139.83 Aligned_cols=136 Identities=29% Similarity=0.515 Sum_probs=102.0
Q ss_pred cceEEec--cceecC-----eEEEEEEEEEeC-----CCCcEEEEEecCCCCC----------CCCCCCCCCeEEEEeCC
Q 035919 342 YRMVRAT--RGVVEG-----AWYYEIKVVALG-----ETGHTRLGWSTEKGDL----------QAPVGYDGNSFGYRDID 399 (552)
Q Consensus 342 yrsVRAT--~GVssG-----kwYFEVkIvs~G-----~sG~IrIGwATr~a~L----------qapVG~D~~SyGYrg~D 399 (552)
..++|-+ .||..| +||||+.|.+.. +..|+||||+...+-- .+.||.|-+|||| |
T Consensus 658 vss~rpniflgvaegsaqykkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggngvgddl~sygf---d 734 (5019)
T KOG2243|consen 658 VSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGNGVGDDLFSYGF---D 734 (5019)
T ss_pred hhhcCCceeEeeccchHHHHHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCCCccchhhhcCC---C
Confidence 3456665 456666 899999998753 3469999999876421 3578899999999 5
Q ss_pred Cc-EEeCCcccccCC---CCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECCe
Q 035919 400 GS-KVHKALREKYGE---EGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGV 475 (552)
Q Consensus 400 Gk-k~Hng~~e~YG~---~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNGk 475 (552)
|. +|.+.+...... .-+...|||.|++||... .|+|-+||+
T Consensus 735 glhlwsg~i~r~vas~nqhllrsddvisccldl~~p-----------------------------------sisfringq 779 (5019)
T KOG2243|consen 735 GLHLWSGCIARAVASPNQHLLRSDDVISCCLDLGAP-----------------------------------SISFRINGQ 779 (5019)
T ss_pred cchhhcccchhhhcChhhhhhcccchhhhhhhcCCC-----------------------------------ceEEEECCc
Confidence 54 343433332221 246789999999999664 699999999
Q ss_pred EeeeceeecC-CCcEEEEEEEccCCCCCCcEEEEECCCC---CccCCCC
Q 035919 476 CQGVAFKDLY-GGRYYPAASMYSLPNQPNCVVKFNFGPD---FECFPDD 520 (552)
Q Consensus 476 ~LGvAFkdI~-gG~LYPAVSL~tlp~~~g~~VrfNFGp~---F~F~Ppd 520 (552)
.+---|.|+. .|-|||.+|+.. |-+|+|-+|.. |+|.||.
T Consensus 780 pvqgmfenfn~dglffpv~sfsa-----gikvrfllggrhgefkflpp~ 823 (5019)
T KOG2243|consen 780 PVQGMFENFNIDGLFFPVMSFSA-----GIKVRFLLGGRHGEFKFLPPP 823 (5019)
T ss_pred cchhHHhcCCCcceeeeeEeecc-----CeEEEEEecccccceeecCCC
Confidence 9877788764 578999999986 89999999984 9998764
No 11
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=97.98 E-value=1.7e-06 Score=94.17 Aligned_cols=92 Identities=30% Similarity=0.375 Sum_probs=77.9
Q ss_pred EEEEeCCCcEEeC-CcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEE
Q 035919 393 FGYRDIDGSKVHK-ALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFF 471 (552)
Q Consensus 393 yGYrg~DGkk~Hn-g~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FT 471 (552)
|+||++||..+.. +.+..||+ .|..||+|||+||..++ ..+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~-~~~~~d~i~~~~~~~~~-----------------------------------~~~~~ 44 (469)
T KOG1477|consen 1 YGYHGDDGNFFLKSGDGQLYGP-VFTTGDVIPCEVNTING-----------------------------------SDFFT 44 (469)
T ss_pred CCCcccchhhhhhcccccccCC-cCCccccccceEeccCC-----------------------------------ceeEE
Confidence 5789999998875 57889997 99999999999999887 57999
Q ss_pred ECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECCCC-CccCCCCCCCCC
Q 035919 472 KNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPD-FECFPDDFGERP 525 (552)
Q Consensus 472 KNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~-F~F~Ppdf~~rP 525 (552)
+||..+|++|-.... -+||-|.+++ .+..+..|||.- |.|...+++.+.
T Consensus 45 ~~~~~~gi~f~~~~~-~~~~dvg~~~----~~~~~~~N~~~~~Fe~~i~d~g~~~ 94 (469)
T KOG1477|consen 45 KNGPDMGIAFYTPPA-LLYHDVGVVQ----AGEPLPANFGIYYFEFDILDYGIEG 94 (469)
T ss_pred EEcCCcceeeecCcc-ccCCCcceee----CCCCCCcccccceeeeeHHHhhhhh
Confidence 999999999986553 3788888887 688899999995 999988776443
No 12
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=96.44 E-value=0.00086 Score=74.84 Aligned_cols=182 Identities=27% Similarity=0.446 Sum_probs=117.8
Q ss_pred cCCCCCCCCCCCCCCCCceEEeCCCccCCcEEEcCCCcEEEeC------CCcceEEeccceecCeEEEEEEEEEeCCC--
Q 035919 297 LITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGST------KGYRMVRATRGVVEGAWYYEIKVVALGET-- 368 (552)
Q Consensus 297 lisP~P~~~~~~dd~p~~~V~LS~~~ks~~I~LS~DgLTVtg~------kGyrsVRAT~GVssGkwYFEVkIvs~G~s-- 368 (552)
..++.+..+...... ...+|.+...|... ...+++.+.... ..|...|+..++..+...||-++......
T Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~ 97 (558)
T KOG2242|consen 20 AWSPQPPAEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCFEMRINEPEEVPH 97 (558)
T ss_pred hccCCCCcccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchhhcccccccccCC
Confidence 345555555555555 66778888888877 666666554421 23445555555555554444444432211
Q ss_pred --------CcEEEEEecCCCCCCCCCCCCCCeEEEEeCCCcEEeCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q 035919 369 --------GHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPH 440 (552)
Q Consensus 369 --------G~IrIGwATr~a~LqapVG~D~~SyGYrg~DGkk~Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~ 440 (552)
-..+|||...... ..+|.+..+|+|.. .+.+-.+.....|+. .|.+.|+|||.+++....
T Consensus 98 ~~~~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e-~f~e~~~i~c~~~~~~~d-------- 165 (558)
T KOG2242|consen 98 FQPLEPDPHDVRIGWSLDSIR--TLLGDEPFSYGYSE-TGKKSCNSEVEKYGE-KFPENDVIGCFADFEILD-------- 165 (558)
T ss_pred CCccccccccccccccchhhh--hccccccccccccc-cccchhhHHHHHHHh-hcccccccchhhcccccc--------
Confidence 2466677655432 34777888999876 455555555678997 899999999999987632
Q ss_pred ccccccccceecCCCCCCCCCCCCCcEEEEEECCeEeeeceee---cCCCc-EEEEEEEccCCCCCCcEEEEECCCC---
Q 035919 441 FVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKD---LYGGR-YYPAASMYSLPNQPNCVVKFNFGPD--- 513 (552)
Q Consensus 441 Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNGk~LGvAFkd---I~gG~-LYPAVSL~tlp~~~g~~VrfNFGp~--- 513 (552)
...+.|.+||..++.+|.. ..++. +||.|-. +.|.|.+|||+.
T Consensus 166 ------------------------~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~vl~------~~~~ve~~f~~~~ag 215 (558)
T KOG2242|consen 166 ------------------------EVELSYEKNGQDLGESFLLSKEDLGGQALYPHVLR------KNCAVEGNFGQKAAG 215 (558)
T ss_pred ------------------------cCcchhhhccchhhhhhcchhhhccCcccCccccc------Ccceecccccccccc
Confidence 2368899999999999852 12344 8887744 479999999995
Q ss_pred CccCCCCCC
Q 035919 514 FECFPDDFG 522 (552)
Q Consensus 514 F~F~Ppdf~ 522 (552)
|.+.+.++.
T Consensus 216 ~~~v~~~~~ 224 (558)
T KOG2242|consen 216 YEPVKEEYT 224 (558)
T ss_pred ccccchhhh
Confidence 555444443
No 13
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=94.26 E-value=0.22 Score=41.58 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=36.0
Q ss_pred CccCCcEEEcCCCcEEEeCCCc--ceEEeccceecCeEEEEEEEEEeC--CCCcEEEEEecC
Q 035919 321 VYKAEKVELSDDRLTAGSTKGY--RMVRATRGVVEGAWYYEIKVVALG--ETGHTRLGWSTE 378 (552)
Q Consensus 321 ~~ks~~I~LS~DgLTVtg~kGy--rsVRAT~GVssGkwYFEVkIvs~G--~sG~IrIGwATr 378 (552)
..++.+|.|++|+.++....+| ..|.+.+++..|- .|+|+|.... -.|.++||+.+.
T Consensus 7 ~~~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~E-~~~v~I~~~~~~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 7 NVHGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIGE-KFEVRIDEVEPSWSGSLRIGVTSC 67 (69)
T ss_dssp -EE-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT--EEEEEEEEE-SSSSS--EEEEESS
T ss_pred cccCCCEEEcCCCeEEEecccCCceEEEecCCccCCC-EEEEEEEecCCCceeEEEEeeEcc
Confidence 3578999999999999976554 4789999998775 4666666653 578999999874
No 14
>smart00588 NEUZ domain in neuralized proteins.
Probab=93.61 E-value=1.2 Score=40.78 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=44.6
Q ss_pred CccCCcEEEcCCCcEEEeCCC-c--ceEEeccceecCeEEEEEEEEEe--CCCCcEEEEEecCC
Q 035919 321 VYKAEKVELSDDRLTAGSTKG-Y--RMVRATRGVVEGAWYYEIKVVAL--GETGHTRLGWSTEK 379 (552)
Q Consensus 321 ~~ks~~I~LS~DgLTVtg~kG-y--rsVRAT~GVssGkwYFEVkIvs~--G~sG~IrIGwATr~ 379 (552)
..++.+|.|++|+.++....+ | ..|.+.+++..|-- |+|+|... +-.|.++||+.+.+
T Consensus 7 ~~~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E~-~~v~i~~~~~~w~G~l~~G~Ts~d 69 (123)
T smart00588 7 HRHGSNIRLSDSGRVARRSASDFCNALVFSARPLRINEL-FEVKIEKVVRKWSGALRFGVTTCD 69 (123)
T ss_pred cccCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCCE-EEEEEEEecCCccCceEEEEecCC
Confidence 458899999999999987644 4 35789999987742 46666553 45789999999875
No 15
>KOG4625 consensus Notch signaling protein Neuralized, Nuez domain [Signal transduction mechanisms]
Probab=67.97 E-value=16 Score=41.81 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=45.5
Q ss_pred cCCcEEEcCCCcEEEeCCCcc--eEEeccceecCeEEEEEEEEEe--CCCCcEEEEEecCC
Q 035919 323 KAEKVELSDDRLTAGSTKGYR--MVRATRGVVEGAWYYEIKVVAL--GETGHTRLGWSTEK 379 (552)
Q Consensus 323 ks~~I~LS~DgLTVtg~kGyr--sVRAT~GVssGkwYFEVkIvs~--G~sG~IrIGwATr~ 379 (552)
.+.+|.|++++.++.....|+ .+++++++..|- -|+|+|... +-+|++|+|+....
T Consensus 108 HGsNi~I~~~g~~A~RraSF~dAItFSnRPl~~~E-~f~v~ieki~~~WSG~irlGvT~~d 167 (595)
T KOG4625|consen 108 HGSNIRIDNSGTLAKRRASFCDAITFSNRPLRIGE-LFLVEIEKIERGWSGHLRLGVTSLD 167 (595)
T ss_pred cCcceEECCCcceeehhhhhcceeeeccCcCCCCc-EEEEEEEEeccCccceeEeecccCC
Confidence 488999999999999877775 567899998875 477887765 45799999998764
No 16
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=58.87 E-value=15 Score=41.96 Aligned_cols=88 Identities=13% Similarity=-0.015 Sum_probs=56.3
Q ss_pred CcceEEeccceecC----eEEEEEEEEEeCCCCcEEEEEecCCCCCC----CCCCCCCCeEEEEeCCCcEEeCCcccccC
Q 035919 341 GYRMVRATRGVVEG----AWYYEIKVVALGETGHTRLGWSTEKGDLQ----APVGYDGNSFGYRDIDGSKVHKALREKYG 412 (552)
Q Consensus 341 GyrsVRAT~GVssG----kwYFEVkIvs~G~sG~IrIGwATr~a~Lq----apVG~D~~SyGYrg~DGkk~Hng~~e~YG 412 (552)
+...+|++..+..+ +||++..++. .++..+++.+...-+. ..+|.+..+.++....=.++-+.......
T Consensus 367 s~~~v~~~~~~~d~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 443 (558)
T KOG2242|consen 367 SRTIVRTEVEGKDVGETAVLEMNANFTL---PGVMDYMDETGDSELLKEEAYGIGDQYSEEARKALPPQKKPNDRRKSNI 443 (558)
T ss_pred cccceEeeeecccCCcceEEEEeeeecc---CchhhhhhhccccccchhhcccccccHhHHhhhccCcccccccccccCc
Confidence 34457777777544 8888888876 5778888888765543 34566666666654222233333222333
Q ss_pred CCCCCCCCEEEEEEECCCC
Q 035919 413 EEGYKEGDVIGFYINLPEG 431 (552)
Q Consensus 413 ~~~f~eGDVIGCgIDL~~G 431 (552)
.+..+.+|++|..++...+
T Consensus 444 ~~~~~~~~~~g~~~~~~q~ 462 (558)
T KOG2242|consen 444 NETDTQQQRRGGTANGSQK 462 (558)
T ss_pred CcccchhhhccccccCCcc
Confidence 3478899999999888765
No 17
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=42.77 E-value=45 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=18.5
Q ss_pred EEeCCCccCCcEEEcCCCcEEEeC
Q 035919 316 ICLSKVYKAEKVELSDDRLTAGST 339 (552)
Q Consensus 316 V~LS~~~ks~~I~LS~DgLTVtg~ 339 (552)
++||+.-..+.|.||+|+.+|...
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~~ 24 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRYS 24 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE-
T ss_pred CEECcccCCCCeEECCCCeEEEEc
Confidence 578899999999999999999864
No 18
>KOG4625 consensus Notch signaling protein Neuralized, Nuez domain [Signal transduction mechanisms]
Probab=41.85 E-value=1.1e+02 Score=35.43 Aligned_cols=57 Identities=35% Similarity=0.417 Sum_probs=43.3
Q ss_pred ccCCcEEEcCCCcEEEeCCC---cceEEeccceecCeEEEEEEEEEeCC--CCcEEEEEecCC
Q 035919 322 YKAEKVELSDDRLTAGSTKG---YRMVRATRGVVEGAWYYEIKVVALGE--TGHTRLGWSTEK 379 (552)
Q Consensus 322 ~ks~~I~LS~DgLTVtg~kG---yrsVRAT~GVssGkwYFEVkIvs~G~--sG~IrIGwATr~ 379 (552)
-++.+|.|++|+..++...| -+.|+..++++.|. -|||+|...+. .|..+||+.+-+
T Consensus 299 ~~G~nv~l~~d~tvA~r~~~~~s~glVFterPlr~~e-~~~Ikv~~v~~l~~G~L~lGvT~~d 360 (595)
T KOG4625|consen 299 TKGANVRLSDDGTVARREHGAYSQGLVFTERPLRVGE-KLEIKVTRVGRLYAGALSLGVTTCD 360 (595)
T ss_pred eccccccccCCCcccccccccccceEEEEecccccCC-EEEEEeeecchhhcchhhccceecC
Confidence 57889999999988876533 45688899987664 48898887643 578899998764
No 19
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=27.35 E-value=1e+02 Score=26.58 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=27.1
Q ss_pred cEEEEEECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECC
Q 035919 466 SEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFG 511 (552)
Q Consensus 466 SeI~FTKNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFG 511 (552)
..|+||.+|+++|++-..-. .+.+.+... ...|.+.|.
T Consensus 26 ~~vl~Fh~G~fiGt~t~~p~--~~~~v~~~~------~~~V~V~Y~ 63 (89)
T PF14041_consen 26 QQVLFFHDGEFIGTATPDPY--GYIDVIRST------DDTVTVQYR 63 (89)
T ss_pred eEEEEEECCEEcccCCcccc--CceeEEeeC------CCEEEEEEE
Confidence 47999999999999865433 455666332 577888774
No 20
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=24.35 E-value=59 Score=29.47 Aligned_cols=46 Identities=26% Similarity=0.349 Sum_probs=32.0
Q ss_pred cEEEEEECCeEee---------eceeecCCCcEEEEEEEccCCCCCCcEEEEECCCC
Q 035919 466 SEISFFKNGVCQG---------VAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPD 513 (552)
Q Consensus 466 SeI~FTKNGk~LG---------vAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~ 513 (552)
...+||+||.++- .+|+.+..+..||.+-++- .++.+.|.+|..|.
T Consensus 44 ~~q~ifVN~R~V~~~~l~~ai~~~y~~~~~~~~~P~~vL~l--~ipp~~vDvNVhP~ 98 (123)
T cd03482 44 DIQYFYVNGRMVRDKLISHAVRQAYSDVLHGGRHPAYVLYL--ELDPAQVDVNVHPA 98 (123)
T ss_pred CcEEEEEcCcEECChHHHHHHHHHHHHhccCCCCcEEEEEE--EcChHheeeccCCC
Confidence 3689999999873 2455544456778776654 34677889998874
No 21
>smart00589 PRY associated with SPRY domains.
Probab=23.62 E-value=99 Score=22.96 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=22.0
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeC
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGST 339 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~ 339 (552)
.+.||+....+.|.||+|+.+|+..
T Consensus 3 ~vtld~~tA~~~l~lS~d~~~v~~~ 27 (52)
T smart00589 3 DVTLDPDTAHPYLLLSEDRRSVRYG 27 (52)
T ss_pred CCEECcccCCCCeEECCCCCEEEEC
Confidence 4689999999999999999999854
No 22
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=23.37 E-value=66 Score=28.35 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=31.1
Q ss_pred EEEEEECCeEeee---------ceeecCCCcEEEEEEEccCCCCCCcEEEEECCCC
Q 035919 467 EISFFKNGVCQGV---------AFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPD 513 (552)
Q Consensus 467 eI~FTKNGk~LGv---------AFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~ 513 (552)
..+||+||+.+-. +|+.......||++-++- .++...+.+|..|.
T Consensus 45 ~q~~fVN~R~v~~~~l~~ai~~~y~~~~~~~~~P~~~L~i--~~~~~~~DvNvhP~ 98 (122)
T cd00782 45 RQFLFVNGRPVRDKLLSKAINEAYRSYLPKGRYPVFVLNL--ELPPELVDVNVHPT 98 (122)
T ss_pred cEEEEECCeEecCHHHHHHHHHHHHHhCcCCCCcEEEEEE--EeChhheeeeeCCC
Confidence 6899999999852 344433346778777664 35667789999884
No 23
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=20.16 E-value=1.7e+02 Score=24.06 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=9.8
Q ss_pred CCCCCCEEEEEEECCC
Q 035919 415 GYKEGDVIGFYINLPE 430 (552)
Q Consensus 415 ~f~eGDVIGCgIDL~~ 430 (552)
.++.||||-+......
T Consensus 28 ~L~~Gdvi~l~~~~~~ 43 (77)
T PF01052_consen 28 NLKVGDVIPLDKPADE 43 (77)
T ss_dssp C--TT-EEEECCESST
T ss_pred cCCCCCEEEeCCCCCC
Confidence 5899999988877544
Done!