Query 035919
Match_columns 552
No_of_seqs 222 out of 1177
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3toj_A SET1/ASH2 histone methy 100.0 8.8E-44 3E-48 340.8 20.3 180 315-527 12-191 (213)
2 2yyo_A SPRY domain-containing 100.0 2.8E-41 9.5E-46 314.1 17.3 167 319-520 3-171 (171)
3 3emw_A SPRY domain-containing 100.0 1.2E-27 4.1E-32 230.2 16.4 158 314-510 42-214 (217)
4 2jk9_A SPRY domain-containing 99.9 5.8E-27 2E-31 222.5 17.0 158 313-510 30-205 (212)
5 2afj_A Gene rich cluster, C9 g 99.9 7E-26 2.4E-30 217.8 7.3 160 313-511 38-212 (226)
6 2fbe_A Predicted: similar to R 99.3 1E-10 3.4E-15 112.0 17.7 141 315-496 11-171 (201)
7 2vok_A 52 kDa RO protein; poly 99.3 8.3E-11 2.8E-15 111.5 16.8 142 314-497 9-171 (188)
8 2wl1_A Pyrin, marenostrin; amy 99.3 7.8E-11 2.7E-15 111.6 15.8 141 315-497 14-175 (191)
9 3uv9_A TRIM5alpha, tripartite 99.2 1.4E-10 4.9E-15 109.4 14.7 143 315-497 13-174 (186)
10 3kb5_A Tripartite motif-contai 99.0 7.3E-09 2.5E-13 98.2 16.3 142 315-496 13-179 (193)
11 4b3n_A Maltose-binding peripla 98.8 3.5E-08 1.2E-12 105.9 15.4 144 314-497 410-594 (602)
12 2e63_A KIAA1787 protein; struc 98.8 1.3E-07 4.3E-12 89.0 16.7 136 322-497 12-162 (170)
13 2yue_A Protein neuralized; str 98.3 1.6E-05 5.6E-10 74.6 15.2 133 322-509 14-160 (168)
No 1
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=100.00 E-value=8.8e-44 Score=340.75 Aligned_cols=180 Identities=48% Similarity=0.899 Sum_probs=163.9
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeCCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEE
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFG 394 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyG 394 (552)
.|+||+.++++.|.||+|+|+|++.++|++||+++++.+|+|||||+|...+..++++||||++.+++++++|+|.+|||
T Consensus 12 ~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~~~G~d~~S~g 91 (213)
T 3toj_A 12 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYS 91 (213)
T ss_dssp CCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTTSCTTSSTTEEE
T ss_pred eEEechhhCCCCEEEcCCCcEEEeCCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCcccccCCCCCCCcEE
Confidence 58999999999999999999999999999999999999999999999999777789999999999999999999999999
Q ss_pred EEeCCCcEEeCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECC
Q 035919 395 YRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNG 474 (552)
Q Consensus 395 Yrg~DGkk~Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNG 474 (552)
|++.+|++||++....||. +|+.||||||+||++.++. ....+++|+||+||
T Consensus 92 y~~~~G~~~h~~~~~~yg~-~~~~GDvIGc~ld~~~~~~---------------------------~~~~~g~i~Ft~NG 143 (213)
T 3toj_A 92 WRSKKGTKFHQSIGKHYSS-GYGQGDVLGFYINLPEDTI---------------------------SGRGSSEIIFYKNG 143 (213)
T ss_dssp EETTTTCEEETTEEECCSC-CCCTTCEEEEEEEECCC--------------------------------CCCEEEEEETT
T ss_pred EECCCCeEEeCCcCcccCC-CCCCCCEEEEEEEcCCCcc---------------------------ccCCccEEEEEeCC
Confidence 9999999999988889997 9999999999999998531 12334689999999
Q ss_pred eEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECCCCCccCCCCCCCCCCC
Q 035919 475 VCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVP 527 (552)
Q Consensus 475 k~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~Ppdf~~rP~p 527 (552)
+.||+||++|+.+.|||+||++. ++.|++|||++|+|+|++++++|+-
T Consensus 144 ~~lg~aF~~~~~~~lyPavsl~~-----~~~v~~NFG~~F~~~p~~~~~~~~~ 191 (213)
T 3toj_A 144 VNQGVAYKDIFEGVYFPAISLYK-----SCTVSINFGPCFKYPPKDLTYRPMS 191 (213)
T ss_dssp EEEEEEEESCCSSCBEEEEEEES-----SCEEEEECSSSCSSCCSSCCCEEGG
T ss_pred eeeeeeEEcCCCCcEEEEEEcCC-----CCEEEEECCCCCccCCCCCceEcHH
Confidence 99999999998889999999986 8999999999999999987765543
No 2
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=314.11 Aligned_cols=167 Identities=21% Similarity=0.275 Sum_probs=144.4
Q ss_pred CCCccCCcEEEcCCCcEEEeCC-CcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEEEEe
Q 035919 319 SKVYKAEKVELSDDRLTAGSTK-GYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRD 397 (552)
Q Consensus 319 S~~~ks~~I~LS~DgLTVtg~k-GyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyGYrg 397 (552)
+..+++..|.|++|+|++++.. +|++|||++++.+|+|||||+|...+..++++|||++..+++++++||+.+||||++
T Consensus 3 s~~dr~~~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~~~G~d~~S~gy~~ 82 (171)
T 2yyo_A 3 SGSSGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDHQPGWLPDSVAYHA 82 (171)
T ss_dssp ---CEEESEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTTSCTTSSTTCEEEET
T ss_pred CcccCcceEEEcCCEEEEeCCCCceeEEEECCCCCCCCEEEEEEEEECCCCcEEEEEecCCCCCCccCCCccCCEEEEEc
Confidence 4578899999999999999874 899999999999999999999999888899999999999999999999999999999
Q ss_pred CCCcEEeCC-cccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECCeE
Q 035919 398 IDGSKVHKA-LREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVC 476 (552)
Q Consensus 398 ~DGkk~Hng-~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNGk~ 476 (552)
++|++||+. ....||+ +|++||||||+||+++.. ...++|+|||||++
T Consensus 83 ~dG~~~~~~~~~~~yg~-~f~~GDvIGc~id~~~~~------------------------------~~~~~i~Ft~NG~~ 131 (171)
T 2yyo_A 83 DDGKLYNGRAKGRQFGS-KCNSGDRIGCGIEPVSFD------------------------------VQTAQIFFTKNGKR 131 (171)
T ss_dssp TTCCEESSSSCCBCCSC-CCCTTCEEEEEECGGGGS------------------------------SSCEEEEEEETTEE
T ss_pred CCCeEEeCCCCCCcCCC-CCCCCCEEEEEEEeccCC------------------------------CCcEEEEEEECCEE
Confidence 999999974 6788997 999999999999997410 01248999999999
Q ss_pred eeeceeecCCCcEEEEEEEccCCCCCCcEEEEECCCCCccCCCC
Q 035919 477 QGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDD 520 (552)
Q Consensus 477 LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~Ppd 520 (552)
||+||++|..+.|||||||.. .++.|+||||+.|.|+|++
T Consensus 132 lg~af~~~~~~~lyPaV~l~~----~g~~v~vNFG~~~~~pp~~ 171 (171)
T 2yyo_A 132 VGSTIMPMSPDGLFPAVGMHS----LGEEVRLHLNAELSGPSSG 171 (171)
T ss_dssp EEEEEESSCSSSCEEEEEECS----TTEEEEEETTCCC------
T ss_pred cCceecCCcCCCEEEEEEEec----CCCEEEEECCCCCcCCCCC
Confidence 999999998789999999986 5899999999999998863
No 3
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=99.95 E-value=1.2e-27 Score=230.20 Aligned_cols=158 Identities=22% Similarity=0.315 Sum_probs=138.6
Q ss_pred ceEEeCCCccCCcEEEcCCCcEEEeC---CCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCC-----CCCC
Q 035919 314 MKICLSKVYKAEKVELSDDRLTAGST---KGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGD-----LQAP 385 (552)
Q Consensus 314 ~~V~LS~~~ks~~I~LS~DgLTVtg~---kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~-----Lqap 385 (552)
..++||+..+.+.|.||+|+++|+.. .+|.+||++.++++|+|||||+|......+.++||||+...+ ....
T Consensus 42 ~~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~~ 121 (217)
T 3emw_A 42 RRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAAL 121 (217)
T ss_dssp HHTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCCC
T ss_pred cceEeCcccCCCCEEECCCCeEEEECccCCCCCEEEeCCCccCccEEEEEEEcccCCCCceeEEEEcCccccccCCcccc
Confidence 46899999999999999999999874 578899999999999999999997643335899999999887 4568
Q ss_pred CCCCCCeEEEEeCCCcEEeCCcc---cccCC----CCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCC
Q 035919 386 VGYDGNSFGYRDIDGSKVHKALR---EKYGE----EGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458 (552)
Q Consensus 386 VG~D~~SyGYrg~DGkk~Hng~~---e~YG~----~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~ 458 (552)
+|++..||+|+..+|.+||++.. ..|+. ..|..||+|||+||++.|
T Consensus 122 lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G--------------------------- 174 (217)
T 3emw_A 122 LGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEG--------------------------- 174 (217)
T ss_dssp TTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTT---------------------------
T ss_pred ccCCCCEEEEEeCCCcEEeCCcccCCccccccccccCCCCCCEEEEEEEcCCC---------------------------
Confidence 99999999999889999998743 35752 268999999999999998
Q ss_pred CCCCCCCcEEEEEECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEEC
Q 035919 459 PPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNF 510 (552)
Q Consensus 459 p~~~~~GSeI~FTKNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNF 510 (552)
+|+||+||+.+|+||++++...|||+||+.. .+|.|+++|
T Consensus 175 --------~LsFy~ng~~lg~aF~~~~~~~LyP~~sl~~----g~~~v~l~~ 214 (217)
T 3emw_A 175 --------TLGYAIGGTYLGPAFRGLKGRTLYPAVSAVW----GQCQVRIRY 214 (217)
T ss_dssp --------EEEEEETTEEEEEEECCCTTCCBEEEEEECS----TTCEEEEEE
T ss_pred --------EEEEEECCeEeEEEEECCCCCEEEEEEEecc----CCcEEEEEe
Confidence 7999999999999999999889999999987 689999886
No 4
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=99.95 E-value=5.8e-27 Score=222.48 Aligned_cols=158 Identities=20% Similarity=0.335 Sum_probs=135.4
Q ss_pred CceEEeCCCccCCcEEEcCCC-cEEEeC---CCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCC-----C
Q 035919 313 EMKICLSKVYKAEKVELSDDR-LTAGST---KGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDL-----Q 383 (552)
Q Consensus 313 ~~~V~LS~~~ks~~I~LS~Dg-LTVtg~---kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~L-----q 383 (552)
...++||+..++++|.||+|+ ++++.. .+|.+||++.++++|+|||||+|......++++||||+....+ .
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~ 109 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYT 109 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSC
T ss_pred ccccccChhhcCCceEEeCCCeEEEEECCCCCccceEEcCCCccCCeEEEEEEEecccCCCcEEEEEEcCCccccccCcc
Confidence 356899999999999999997 577643 4688999999999999999999975333578999999998875 3
Q ss_pred CCCCCCCCeEEEEeCCCcEEeCCccc---c------cCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCC
Q 035919 384 APVGYDGNSFGYRDIDGSKVHKALRE---K------YGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPD 454 (552)
Q Consensus 384 apVG~D~~SyGYrg~DGkk~Hng~~e---~------YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~ 454 (552)
..+|++..||+|+..+|++||++... . |+. .|..||+|||+||++.|
T Consensus 110 ~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~-~~~~~~~IGv~LD~e~G----------------------- 165 (212)
T 2jk9_A 110 TLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDE-TFIVPDSFLVALDMDDG----------------------- 165 (212)
T ss_dssp CCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTC-CCCCCSEEEEEEETTTT-----------------------
T ss_pred cccccCCCcEeeECCCCcEEECCcccCccccCcccccCC-cCCCCCEEEEEEECCCC-----------------------
Confidence 57899999999998899999976432 2 344 67899999999999988
Q ss_pred CCCCCCCCCCCcEEEEEECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEEC
Q 035919 455 SKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNF 510 (552)
Q Consensus 455 ~~e~p~~~~~GSeI~FTKNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNF 510 (552)
+|+||+||+.+|.+|.++++..|||++++.. .++.|++||
T Consensus 166 ------------~lsFy~ng~~l~~aF~~~~~~~l~P~f~l~~----g~~~v~l~~ 205 (212)
T 2jk9_A 166 ------------TLSFIVDGQYMGVAFRGLKGKKLYPVVSAVW----GHCEIRMRY 205 (212)
T ss_dssp ------------EEEEEETTEEEEEEECCCTTCCBEEEEEECC----TTCEEEEEE
T ss_pred ------------EEEEEECCEEeEEEeccCCCCEEeeEEEEEc----CCcEEEEEE
Confidence 7999999999999999998779999999975 478999998
No 5
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=99.92 E-value=7e-26 Score=217.84 Aligned_cols=160 Identities=21% Similarity=0.301 Sum_probs=134.3
Q ss_pred CceEEeCCCccCCcEEEcCCCcEEEeC---CCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCC-----CCC
Q 035919 313 EMKICLSKVYKAEKVELSDDRLTAGST---KGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGD-----LQA 384 (552)
Q Consensus 313 ~~~V~LS~~~ks~~I~LS~DgLTVtg~---kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~-----Lqa 384 (552)
.+.++||+..++++|.||+|+++|+.. .+|.+|+++.++++|+|||||+|......+.++||||+.... ...
T Consensus 38 ~~~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~ 117 (226)
T 2afj_A 38 QRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAA 117 (226)
T ss_dssp HHHHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSC
T ss_pred ccccEEccccCCCCEEEeCCCEEEEECCCCCCcCeEEECCCccCCEEEEEEEEeccCCCCCEEEEecCCccccccccccc
Confidence 346899999999999999999999843 467799999999999999999997643356899999998874 345
Q ss_pred CCCCCCCeEEEEeCCCcEEeCCcc---cccCC----CCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCC
Q 035919 385 PVGYDGNSFGYRDIDGSKVHKALR---EKYGE----EGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKE 457 (552)
Q Consensus 385 pVG~D~~SyGYrg~DGkk~Hng~~---e~YG~----~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e 457 (552)
.+|++..||+|+..+|.++|++.. ..|+. ..|..||+|||+||++.|
T Consensus 118 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G-------------------------- 171 (226)
T 2afj_A 118 LLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEG-------------------------- 171 (226)
T ss_dssp CCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTT--------------------------
T ss_pred cccCCCCcEEEEcCCCeEEECccccCcccccccccCCcCCCCCEEEEEEECCCC--------------------------
Confidence 789999999999878898897652 23531 157889999999999988
Q ss_pred CCCCCCCCcEEEEEECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECC
Q 035919 458 DPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFG 511 (552)
Q Consensus 458 ~p~~~~~GSeI~FTKNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFG 511 (552)
+|+||+||+++|.+|.+++++.|||++++.. .+|.|+|+|-
T Consensus 172 ---------~lSFy~ng~~l~~aF~~~~~~~L~P~f~l~~----g~~~v~l~~~ 212 (226)
T 2afj_A 172 ---------TLGYSIGGTYLGPAFRGLKGRTLYPSVSAVW----GQCQVRIRYM 212 (226)
T ss_dssp ---------EEEEESTTCSCSTTHHHHHHHCCEEEEEECC----TTSCCEEEEE
T ss_pred ---------EEEEEECCeEeEEEEEcCCCCEEEEEEEccc----CCCEEEEEEc
Confidence 7999999999999999988679999999975 3677888873
No 6
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=99.29 E-value=1e-10 Score=111.99 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=103.4
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeCC-------------CcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCC
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGSTK-------------GYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGD 381 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~k-------------GyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~ 381 (552)
.++||+....+.|.||+|+.+|+... .|..|.++.++++|+|||||.|.. ...+.||+|.....
T Consensus 11 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~---~~~w~vGV~~~si~ 87 (201)
T 2fbe_A 11 DMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGT---SQVWDVGVCKESVN 87 (201)
T ss_dssp CCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTT---CSEEEEEEEETTSC
T ss_pred eEEECcccCCCceEECCCCcEEEECCccCCCCCCccceeeccceecCccccCCceEEEEEeCC---CCEEEEEEeeCccC
Confidence 57899999999999999999998542 256899999999999999999853 56799999987654
Q ss_pred CCC--CCCCCCCeEEEEeCCCcEEe--CCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCC
Q 035919 382 LQA--PVGYDGNSFGYRDIDGSKVH--KALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKE 457 (552)
Q Consensus 382 Lqa--pVG~D~~SyGYrg~DGkk~H--ng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e 457 (552)
-.. .+|.+..+|++.-.+|..|. .......- .-.....||++||++.|
T Consensus 88 Rkg~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l~--~~~~~~rVGVfLDye~G-------------------------- 139 (201)
T 2fbe_A 88 RQGKIELSSEHGFLTVGCREGKVFAASTVPMTPLW--VSPQLHRVGIFLDVGMR-------------------------- 139 (201)
T ss_dssp CSSCCCCCTTTTEEEEEEETTTEEEECSSSCEEEC--CCTTCCEEEEEEETTTT--------------------------
T ss_pred CCCcccccCCCCEEEEEEeCCCEEEEEcCCcccCc--cCCCCCEEEEEEEcCCC--------------------------
Confidence 432 35677789998765565442 22111111 12345799999999998
Q ss_pred CCCCCCCCcEEEEEE--CCeEeeeceee-cCCCcEEEEEEEc
Q 035919 458 DPPKVVPGSEISFFK--NGVCQGVAFKD-LYGGRYYPAASMY 496 (552)
Q Consensus 458 ~p~~~~~GSeI~FTK--NGk~LGvAFkd-I~gG~LYPAVSL~ 496 (552)
+|+||- ++..| -.|.. -+.+.|||++++.
T Consensus 140 ---------~lSFY~v~~~~~i-~tF~~~~Fs~pL~P~F~~~ 171 (201)
T 2fbe_A 140 ---------SIAFYNVSDGCHI-YTFIEIPVCEPWRPFFAHK 171 (201)
T ss_dssp ---------EEEEEETTTTEEE-EEECSCCCSSCEEEEEEEE
T ss_pred ---------EEEEEeCCCCcee-EEEcCCCCCCCEEeEEEec
Confidence 688885 33333 35776 3568999999986
No 7
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=99.28 E-value=8.3e-11 Score=111.54 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=104.7
Q ss_pred ceEEeCCCccCCcEEEcCCCcEEEeCC-------------CcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCC
Q 035919 314 MKICLSKVYKAEKVELSDDRLTAGSTK-------------GYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKG 380 (552)
Q Consensus 314 ~~V~LS~~~ks~~I~LS~DgLTVtg~k-------------GyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a 380 (552)
+.++||+.-..+.|.||+|+.+|+... .|..|.++.++++|+|||||+|.. .+.+.||+|....
T Consensus 9 ~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~---~~~w~vGV~~~si 85 (188)
T 2vok_A 9 VHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ---KEAWDLGVCRDSV 85 (188)
T ss_dssp CCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTT---CSCEEEEEEETTC
T ss_pred cceEECCccCCCCeEECCCCCEEEECCccCCCCCCccceeeeccccccCcccCCCeEEEEEecC---CceEEEEEeeCCc
Confidence 357899999999999999999998542 356899999999999999999853 4579999998765
Q ss_pred CCC--CCCCCCCCeEEEEeCCCc--EEeCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCC
Q 035919 381 DLQ--APVGYDGNSFGYRDIDGS--KVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSK 456 (552)
Q Consensus 381 ~Lq--apVG~D~~SyGYrg~DGk--k~Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~ 456 (552)
.-. ..+|.+..+|++.-.+|. .+|+... ..- .-.....||++||++.|
T Consensus 86 ~Rkg~~~~~~~~~~W~l~~~~~~y~~~~~~~~-~l~--~~~~~~rVGVfLDye~G------------------------- 137 (188)
T 2vok_A 86 QRKGQFSLSPENGFWTIWLWQDSYEAGTSPQT-TLH--IQVPPCQIGIFVDYEAG------------------------- 137 (188)
T ss_dssp CCSSCCCCSTTTTEEEEEEETTEEEECSSSCE-EEC--CSSCCSEEEEEEETTTT-------------------------
T ss_pred CCCCccccCCCCCEEEEEEECCEEEEEeCCcc-CEe--cCCCCCEEEEEEEcCCC-------------------------
Confidence 433 356888999998876664 2233221 111 11246799999999998
Q ss_pred CCCCCCCCCcEEEEEEC--C-eEeeeceee-cCCCcEEEEEEEcc
Q 035919 457 EDPPKVVPGSEISFFKN--G-VCQGVAFKD-LYGGRYYPAASMYS 497 (552)
Q Consensus 457 e~p~~~~~GSeI~FTKN--G-k~LGvAFkd-I~gG~LYPAVSL~t 497 (552)
.|+||-- + ..| -.|.. -+.+.|||++++..
T Consensus 138 ----------~lSFY~v~~~~~~I-~tF~~~~Fs~pL~P~F~~~~ 171 (188)
T 2vok_A 138 ----------VVSFYNITDHGSLI-YTFSECVFAGPLRPFFNVGF 171 (188)
T ss_dssp ----------EEEEEETTTTTEEE-EEECSCCCCSCEEEEEECCC
T ss_pred ----------EEEEEECCCCCeee-EEecCCCCCCCEEeEEEecc
Confidence 6888853 3 333 45776 45789999998864
No 8
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=99.27 E-value=7.8e-11 Score=111.63 Aligned_cols=141 Identities=14% Similarity=0.157 Sum_probs=102.9
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeCC-------------CcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCC
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGSTK-------------GYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGD 381 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~k-------------GyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~ 381 (552)
.++||+.-..+.|.||+|+.+|+... .|..|.++.++++|+|||||+|.. .+.+.||+|.....
T Consensus 14 ~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~---~~~w~vGV~~~s~~ 90 (191)
T 2wl1_A 14 NVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGD---KTAWILGACKTSIS 90 (191)
T ss_dssp CCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTT---CSCEEEEEEETTCC
T ss_pred eeEECCccCCCceEECCCCcEEEECCcCCCCCCCcccccccccccCcccccCCCEEEEEEeCC---CCEEEEEEeeCCcC
Confidence 58999999999999999999998542 255799999999999999999853 46799999987654
Q ss_pred CC--CCCCCCCCeEEEEeCCCcEE---eCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCC
Q 035919 382 LQ--APVGYDGNSFGYRDIDGSKV---HKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSK 456 (552)
Q Consensus 382 Lq--apVG~D~~SyGYrg~DGkk~---Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~ 456 (552)
-. ..+|.+..+|++.-.+|..+ |+.... .- .-.....||++||++.|
T Consensus 91 Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~-l~--~~~~~~rVGVfLDye~G------------------------- 142 (191)
T 2wl1_A 91 RKGNMTLSPENGYWVVIMMKENEYQASSVPPTR-LL--IKEPPKRVGIFVDYRVG------------------------- 142 (191)
T ss_dssp SSSCCCCCGGGTEEEEEEEETTEEEECCSSCEE-CC--CSSCCSEEEEEEETTTT-------------------------
T ss_pred CCCccccCCCCCEEEEEEeCCCEEEEEcCCCcc-Cc--cccCCcEEEEEEEcCCC-------------------------
Confidence 33 24677788899875444443 332111 11 12346799999999998
Q ss_pred CCCCCCCCCcEEEEEE--CCeEeeeceee-cCCCcEEEEEEEcc
Q 035919 457 EDPPKVVPGSEISFFK--NGVCQGVAFKD-LYGGRYYPAASMYS 497 (552)
Q Consensus 457 e~p~~~~~GSeI~FTK--NGk~LGvAFkd-I~gG~LYPAVSL~t 497 (552)
.|+||- ++..| -.|.. -+.+.|||++++..
T Consensus 143 ----------~lSFY~v~~~~~i-~tF~~~~Fs~pl~P~F~~~~ 175 (191)
T 2wl1_A 143 ----------SISFYNVTARSHI-YTFASCSFSGPLQPIFSPGT 175 (191)
T ss_dssp ----------EEEEEETTTTEEE-EEECCCCCCSCEEEEEECCC
T ss_pred ----------EEEEEECCCCcce-EEeCCCCCCCCEEeEEEccc
Confidence 688884 34333 35765 45789999998864
No 9
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=99.22 E-value=1.4e-10 Score=109.42 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=101.8
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeCCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCC-------CCCC
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQ-------APVG 387 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~Lq-------apVG 387 (552)
.|+||+.... .+.||+|+.+|+.... ..|.+..++++|+|||||+|.. .+.+.||+|....... ..+|
T Consensus 13 ~vTLDp~TA~-~l~lSed~r~Vr~~~~-~~VLG~~~ftsGrHYWEVeV~~---~~~W~vGV~~~~~~r~~~~~~~~~~~~ 87 (186)
T 3uv9_A 13 DVTLATNNIS-HAVIAEDKRQVSSRAG-TGVLGSQSITSGKHYWEVDVSK---KSAWILGVCAGFQSDAMYNIEQNENYQ 87 (186)
T ss_dssp CCCCCCCSSC-CCEECTTSSCEECCCS-SCEECSSCBCSSEEEEEEECTT---CSCEEEEEESCSTTTTTTTHHHHTCCC
T ss_pred EeEeCCCCcC-CceECCCCCEEeecCC-CcCcCCCCCCCCCEEEEEEEcC---CCcEEEEEEEEEecccccccCCCcccC
Confidence 5788988776 5999999999986543 4699999999999999999843 5679999997654331 3578
Q ss_pred CCCCeEEEEeCCCcE---EeCCcc-cccCC-----CCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCC
Q 035919 388 YDGNSFGYRDIDGSK---VHKALR-EKYGE-----EGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKED 458 (552)
Q Consensus 388 ~D~~SyGYrg~DGkk---~Hng~~-e~YG~-----~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~ 458 (552)
.+..+|++.-.+|.. +|++.. ...+. .--.....||++||++.|
T Consensus 88 ~~~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G--------------------------- 140 (186)
T 3uv9_A 88 PKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEAC--------------------------- 140 (186)
T ss_dssp GGGTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTT---------------------------
T ss_pred CCCCEEEEEECCCCEEEEEeCCCccccCCCccCcccccccCCEEEEEeecCCC---------------------------
Confidence 888899987667764 455432 11221 012346799999999998
Q ss_pred CCCCCCCcEEEEEE--CCeEeeeceeec-CCCcEEEEEEEcc
Q 035919 459 PPKVVPGSEISFFK--NGVCQGVAFKDL-YGGRYYPAASMYS 497 (552)
Q Consensus 459 p~~~~~GSeI~FTK--NGk~LGvAFkdI-~gG~LYPAVSL~t 497 (552)
.|+||= |...+--.|... +.+.|||+.++..
T Consensus 141 --------~lSFYnv~d~~~lI~tF~~~~Fs~pL~P~F~~~~ 174 (186)
T 3uv9_A 141 --------TVSFFNITNHGFLIYKFSQCSFSKPVFPYLNPRK 174 (186)
T ss_dssp --------EEEEEETTTTTEEEEEECSCCCSSCBEEEEECTT
T ss_pred --------EEEEEeCCCCceEEEEeCCcCCCCCEEeEEECCC
Confidence 688873 322232456543 4689999999865
No 10
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens}
Probab=99.01 E-value=7.3e-09 Score=98.16 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=99.3
Q ss_pred eEEeCCCccCCcEEEcCCCcEEEeCC--------------CcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCC
Q 035919 315 KICLSKVYKAEKVELSDDRLTAGSTK--------------GYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKG 380 (552)
Q Consensus 315 ~V~LS~~~ks~~I~LS~DgLTVtg~k--------------GyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a 380 (552)
.++||+.-..+.|.||+|+.+|+... .+..|.+..++++|+|||||.|.. .+.+.||+|....
T Consensus 13 ~vtLDp~TA~~~L~lSed~~~v~~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrhYWEVev~~---~~~W~lGV~~~s~ 89 (193)
T 3kb5_A 13 ELTFDPSSAHPSLVVSSSGRRVECSEQKAPPAGEDPRQFDKAVAVVAHQQLSEGEHYWEVDVGD---KPRWALGVIAAEA 89 (193)
T ss_dssp CCCBCTTTSCTTEEEETTTTEEEECCSCCCCCCSCTTSCSSSCEEEBSCCBCSSEEEEEEECTT---CSSEEEEEEETTS
T ss_pred cEEECCCCCCCCEEECCCCCEEEECCcCCCCCCCCccccccccEEccCCcccCCCEEEEEEeCc---CceEEEEEeeCCc
Confidence 57899999999999999999998532 245799999999999999999853 4679999998765
Q ss_pred CCCC--CCCCCCCeEEEEeCCCcEE---eCCccc-ccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCC
Q 035919 381 DLQA--PVGYDGNSFGYRDIDGSKV---HKALRE-KYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPD 454 (552)
Q Consensus 381 ~Lqa--pVG~D~~SyGYrg~DGkk~---Hng~~e-~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~ 454 (552)
.-.. .++.+..+|+....+|..| |+.... .... +-..-..||++||.+.|
T Consensus 90 ~Rkg~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~~~l~~-~~~~~~rVGVfLDye~G----------------------- 145 (193)
T 3kb5_A 90 PRRGRLHAVPSQGLWLLGLREGKILEAHVEAKEPRALRS-PERRPTRIGLYLSFGDG----------------------- 145 (193)
T ss_dssp CCSSSCCCSGGGTEEEEEEETTTEEEECCSSSSCEECCC-CSSCCSEEEEEEETTTT-----------------------
T ss_pred CcCCCcCCCCCCCEEEEEEeCCCEEEEEeCCCccEEEee-cCCCCCEEEEEEEcCCC-----------------------
Confidence 4432 2344667899876566533 332211 0100 01234699999999998
Q ss_pred CCCCCCCCCCCcEEEEEE-C----CeEeeeceeecCCCcEEEEEEEc
Q 035919 455 SKEDPPKVVPGSEISFFK-N----GVCQGVAFKDLYGGRYYPAASMY 496 (552)
Q Consensus 455 ~~e~p~~~~~GSeI~FTK-N----Gk~LGvAFkdI~gG~LYPAVSL~ 496 (552)
.|+||- . +..| -.|..-+.+.|||+.++.
T Consensus 146 ------------~lSFY~v~~~~~~s~I-~tF~~~Ft~pl~P~F~~~ 179 (193)
T 3kb5_A 146 ------------VLSFYDASDADALVPL-FAFHERLPRPVYPFFDVC 179 (193)
T ss_dssp ------------EEEEEECCSTTCCEEE-EEECSCCCSCEEEEEECC
T ss_pred ------------EEEEEeCCCCCCceEE-EEeCCCCCCCeECEEEcc
Confidence 577763 2 2333 346655678999999874
No 11
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.83 E-value=3.5e-08 Score=105.94 Aligned_cols=144 Identities=15% Similarity=0.212 Sum_probs=97.1
Q ss_pred ceEEeCCCccCCcEEEcCCCcEEEeCC---------------------CcceEEeccceecCeEEEEEEEEEeCCCCcEE
Q 035919 314 MKICLSKVYKAEKVELSDDRLTAGSTK---------------------GYRMVRATRGVVEGAWYYEIKVVALGETGHTR 372 (552)
Q Consensus 314 ~~V~LS~~~ks~~I~LS~DgLTVtg~k---------------------GyrsVRAT~GVssGkwYFEVkIvs~G~sG~Ir 372 (552)
+.|+||+...+ ++.||+|+.+|++.. .+.+|.+..++++|+|||||.|.. ...+.
T Consensus 410 v~vtldp~ta~-~l~~s~d~r~v~~~~~~~~~~~p~~~~~~~~~~rF~~~~~VLg~~~f~sGrhyWEV~v~~---~~~w~ 485 (602)
T 4b3n_A 410 VDVTLATNNIS-HAVIAEDKRQVSSRNPQIMYQAPGTLFTFPSLTNFNYCTGVLGSQSITSGKHYWEVDVSK---KSAWI 485 (602)
T ss_dssp CCCCEECCSCC-SCEECTTSSEEECCCC--------------------CCCCEEESSCBSSSEEEEEEECTT---CSCEE
T ss_pred EEEEeCCCCCC-ceeEecCCCEEEECCccccccCCCccCCCCCcccCCCCCEeccCCCCCCEEEEEEEEECC---CeeEE
Confidence 35899998776 588999999998421 134688999999999999999843 56799
Q ss_pred EEEecCCCC---CC----CCCCCCCCeEEEEeCCCcEE---eCCcc-cccCC----CCC-CCCCEEEEEEECCCCCCCCC
Q 035919 373 LGWSTEKGD---LQ----APVGYDGNSFGYRDIDGSKV---HKALR-EKYGE----EGY-KEGDVIGFYINLPEGGQYAP 436 (552)
Q Consensus 373 IGwATr~a~---Lq----apVG~D~~SyGYrg~DGkk~---Hng~~-e~YG~----~~f-~eGDVIGCgIDL~~Gt~~~p 436 (552)
||+|..... .. ..++....+|+.+..+|..| |++.. ..+.+ ... ..=..||++||++.|
T Consensus 486 ~Gv~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~rvgv~ld~~~g----- 560 (602)
T 4b3n_A 486 LGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEAC----- 560 (602)
T ss_dssp EEEECCCCTTTSSTHHHHCCCCGGGTEEEEEEETTTEEEEEECCCSSCCSSCEEEECCCSSCCSEEEEEEETTTT-----
T ss_pred EEEeeccccccccccCCCcccCCCCcEEEEEEecCCeEEEEeCCCcccccCCcccccccCCCCCEEEEEEecCCC-----
Confidence 999964322 11 23556667899877677654 44321 11111 001 113589999999998
Q ss_pred CCCCccccccccceecCCCCCCCCCCCCCcEEEEEE--C-CeEeeeceee-cCCCcEEEEEEEcc
Q 035919 437 KPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFK--N-GVCQGVAFKD-LYGGRYYPAASMYS 497 (552)
Q Consensus 437 k~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTK--N-Gk~LGvAFkd-I~gG~LYPAVSL~t 497 (552)
.|+||- + |..| -.|.. -+.+.|||..+...
T Consensus 561 ------------------------------~~sFy~~~~~~~~i-~tf~~~~f~~~l~P~f~~~~ 594 (602)
T 4b3n_A 561 ------------------------------TVSFFNITNHGFLI-YKFSQCSFSKPVFPYLNPRK 594 (602)
T ss_dssp ------------------------------EEEEEETTTTTEEE-EEECSCCCCSCBEEEEECTT
T ss_pred ------------------------------EEEEEeCCCCceee-EeCCCcCCCCCEeCeEECCC
Confidence 688874 3 3444 34644 24689999998864
No 12
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-07 Score=89.01 Aligned_cols=136 Identities=23% Similarity=0.360 Sum_probs=102.6
Q ss_pred ccCCcEEEcCCCcEEEeC---CCc--ceEEeccceecCeEEEEEEEEEe--CCCCcEEEEEecCC-CCCCC---CCCCCC
Q 035919 322 YKAEKVELSDDRLTAGST---KGY--RMVRATRGVVEGAWYYEIKVVAL--GETGHTRLGWSTEK-GDLQA---PVGYDG 390 (552)
Q Consensus 322 ~ks~~I~LS~DgLTVtg~---kGy--rsVRAT~GVssGkwYFEVkIvs~--G~sG~IrIGwATr~-a~Lqa---pVG~D~ 390 (552)
.++.+|.|++++.++... .+| ..|.+.+++..|- .|+|+|... +-.|+++||+.+-+ ..+.- ...-..
T Consensus 12 ~hG~nI~L~~~~~~A~R~~~~~~f~~givFS~rPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~lP~~~~~L~~ 90 (170)
T 2e63_A 12 RTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGR-VFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSATGLKG 90 (170)
T ss_dssp CCCSSEEECSSSCEEEESCTTTCSCSCCEEEEEEECTTC-EEEEEEEEECCSSCCCCEEEEESSCTTSCCCCSSGGGCCS
T ss_pred ccCCCeEECCCCeEEEeCCCCcccCceEEEECCCCCCCC-EEEEEEEeecCCcceeEEEEEEccChhhccCCCChhhCCC
Confidence 579999999999999986 455 4688999998886 477887765 34789999999874 33321 122234
Q ss_pred CeEEEEeCCCcEEeCC--cccccCC--CCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCc
Q 035919 391 NSFGYRDIDGSKVHKA--LREKYGE--EGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGS 466 (552)
Q Consensus 391 ~SyGYrg~DGkk~Hng--~~e~YG~--~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GS 466 (552)
.+|.|.+ ..+.+++ ..+.||. ..+..||+||+.++-. |
T Consensus 91 ~~Wv~~~--~~v~~ng~~~~e~~~~~l~~l~~Gd~ig~~~~~~-G----------------------------------- 132 (170)
T 2e63_A 91 GSWVVSG--CSVLRDGRSVLEEYGQDLDQLGEGDRVGVERTVA-G----------------------------------- 132 (170)
T ss_dssp SEEEESS--SEEEESSCEEEESCSSCGGGCCSSCCEEEEECTT-S-----------------------------------
T ss_pred CeEEEec--cccccCCcccchhccccccccCCCCEEEEEEcCC-c-----------------------------------
Confidence 6788743 3455554 3567874 2567999999998743 3
Q ss_pred EEEEEECCeEeeeceeecCCCcEEEEEEEcc
Q 035919 467 EISFFKNGVCQGVAFKDLYGGRYYPAASMYS 497 (552)
Q Consensus 467 eI~FTKNGk~LGvAFkdI~gG~LYPAVSL~t 497 (552)
+|+|++||..+|+++.+|+ ..||..|-+|.
T Consensus 133 ~l~~~iNg~~~g~~~~~ip-~~LwavvDvyG 162 (170)
T 2e63_A 133 ELRLWVNGRDCGVAATGLP-PRVWAVVDLYG 162 (170)
T ss_dssp CEEEEESSCEEEEEECCCC-SCEEEEEECCT
T ss_pred EEEEEECCccceeeEcCCC-CcEEEEEEccC
Confidence 6999999999999999997 58999999996
No 13
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=98.28 E-value=1.6e-05 Score=74.58 Aligned_cols=133 Identities=17% Similarity=0.307 Sum_probs=96.0
Q ss_pred ccCCcEEEcCCCcEEEeCCCc--ceEEeccceecCeEEEEEEEEEe--CCCCcEEEEEecCC-CCCC-CCCCC-------
Q 035919 322 YKAEKVELSDDRLTAGSTKGY--RMVRATRGVVEGAWYYEIKVVAL--GETGHTRLGWSTEK-GDLQ-APVGY------- 388 (552)
Q Consensus 322 ~ks~~I~LS~DgLTVtg~kGy--rsVRAT~GVssGkwYFEVkIvs~--G~sG~IrIGwATr~-a~Lq-apVG~------- 388 (552)
.++.+|.|++++.+++...+| ..|.+.+++..|- .|+|+|... +-.|+++||+.+-+ ..++ ..+-+
T Consensus 14 ~~G~nI~L~~~~~~A~R~~sf~~givFS~RPl~~~E-~~~v~I~~~~~~wsG~l~~GvT~~dP~~l~~~lP~~a~~dL~~ 92 (168)
T 2yue_A 14 VHGDNIRISRDGTLARRFESFCRAITFSARPVRINE-RICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPKYACPDLTN 92 (168)
T ss_dssp EECTTEEECCSSCCEEECSCSSCCEEEESSCCCSSC-CEEEEEEECCSSSSSCCEEEEESSCGGGTTTCCCSSSSSHHHH
T ss_pred ccCCCeEECCCCcEEEecccCCceEEEECCCCcCCC-EEEEEEEeecCCcceeEEEeeeecCHHHcCCCCCCcCchHHhc
Confidence 679999999999999987655 4689999998874 377888764 34789999999875 3343 11111
Q ss_pred CCCeEEEEeCCCcEEeCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEE
Q 035919 389 DGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEI 468 (552)
Q Consensus 389 D~~SyGYrg~DGkk~Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI 468 (552)
....|... ..+.|+ ..||+||+.++- +| +|
T Consensus 93 ~~~~W~~~----------l~~~~~----~~g~~l~f~v~~-~G-----------------------------------~l 122 (168)
T 2yue_A 93 RPGFWAKA----------LHEQYC----EKDNILYYYVNG-AG-----------------------------------DV 122 (168)
T ss_dssp STTBCCEE----------CCSTTC----CSSCEEEEEECT-TS-----------------------------------EE
T ss_pred CCCEEEEE----------eccccc----cCCCEEEEEEcC-CC-----------------------------------EE
Confidence 12344331 223343 569999999863 33 79
Q ss_pred EEEECCeEeeeceeecCC-CcEEEEEEEccCCCCCCcEEEEE
Q 035919 469 SFFKNGVCQGVAFKDLYG-GRYYPAASMYSLPNQPNCVVKFN 509 (552)
Q Consensus 469 ~FTKNGk~LGvAFkdI~g-G~LYPAVSL~tlp~~~g~~VrfN 509 (552)
+|++||...|+++.+|+. ..||..|-+|. .-..|++-
T Consensus 123 ~~~iNg~~~g~~~~~V~~~~pLwavvDvyG----~t~~V~il 160 (168)
T 2yue_A 123 IYGINNEEKGVILTGIDTRSLLWTVIDIYG----NCTGIEFL 160 (168)
T ss_dssp EEEESSCEEEEEEECCCCSSCCEEEEECCS----SCSEEEEE
T ss_pred EEEECCCccEEEEcCCCCCCceEEEEEccC----CeEEEEEe
Confidence 999999999999988873 57999999997 34556653
Done!