BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035921
MARIKAAVLVYVAVILLLSTCAPISYCAKKPVAGARKEDVPYITCQVCEKLASQLYHQVQ
KKQAQISPKKISEFEIIGIAENVCNLKKEEADWILKIDIVEQGDKLVLVEQEAEGQCNSE
CKTIERACQEIMGYSDTDVAEYLYTSKPDIKSLVNYLCKDLSKACSTKPPPVLKNRIPGE
PFVPKPAKEAEMERIMRSMEGMPGAPGMQMYSKEDLMNMKNFGGEDGDDNDDEDDDDESD
FPKNLGKVFREKESKSGDWKQRITDGILNTGDVLKKQANKVSNHVQRWWSGIKAARSKKP
GKTEL

High Scoring Gene Products

Symbol, full name Information P value
AT4G29520 protein from Arabidopsis thaliana 5.9e-96

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035921
        (305 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2134348 - symbol:AT4G29520 "AT4G29520" species...   954  5.9e-96   1


>TAIR|locus:2134348 [details] [associations]
            symbol:AT4G29520 "AT4G29520" species:3702 "Arabidopsis
            thaliana" [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0006457 "protein
            folding" evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009627 "systemic acquired resistance" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0034976 "response to endoplasmic reticulum stress"
            evidence=RCA] [GO:0042542 "response to hydrogen peroxide"
            evidence=RCA] GO:GO:0005783 GO:GO:0005886 EMBL:CP002687
            EMBL:AL161575 EMBL:AL079344 UniGene:At.27463 UniGene:At.31913
            InterPro:IPR008139 PROSITE:PS50015 IPI:IPI00542294 PIR:T09915
            RefSeq:NP_194681.1 STRING:Q9SU93 PRIDE:Q9SU93
            EnsemblPlants:AT4G29520.1 GeneID:829073 KEGG:ath:AT4G29520
            TAIR:At4g29520 HOGENOM:HOG000029507 InParanoid:Q9SU93 OMA:EIAENVC
            PhylomeDB:Q9SU93 ProtClustDB:CLSN2685366 ArrayExpress:Q9SU93
            Genevestigator:Q9SU93 Uniprot:Q9SU93
        Length = 306

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 182/289 (62%), Positives = 224/289 (77%)

Query:    19 STCAPISYCAKKPVAGARKEDVPYITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIG 78
             S   P+S  AKKP +  RKEDVPYI CQVCEKL+S+L+  V++KQ QISPKKISE+EII 
Sbjct:    19 SALLPVSDAAKKPSSTPRKEDVPYIKCQVCEKLSSRLHQLVKEKQQQISPKKISEYEIIE 78

Query:    79 IAENVCNLKKEEADWILKIDIVEQGDKLVLVEQEAEGQCNSECKTIERACQEIMGYSDTD 138
             IAENVCNLKKEEADW+LKIDIVE+GD LVLVEQ+ EG CNS+CKTIE ACQ+++GYSDTD
Sbjct:    79 IAENVCNLKKEEADWMLKIDIVEKGDNLVLVEQQEEGMCNSKCKTIENACQKVIGYSDTD 138

Query:   139 VAEYLYTSKPDIKSLVNYLCKDLSKACSTKPPPVLKNRIPGEPFVPKPAKEAEMERIMRS 198
             VAEY+Y SKPD+ SLVN+LCKDL+ ACS KPPPV K+R+PGEPFV KP+K+AEM++I+RS
Sbjct:   139 VAEYIYKSKPDLVSLVNHLCKDLTDACSKKPPPVPKDRVPGEPFVAKPSKDAEMDKILRS 198

Query:   199 MEGMPGAPGMQMYSKEDLMNMKNFXXXXXXXXXXXXXXXXXXFPKNLGKVFREKESKSGD 258
             M+GMPGAPGM++YS+ED+    N                   FPKNLGKV +EKESK+ +
Sbjct:   199 MQGMPGAPGMKVYSREDI-EKGNIGNEDDDGDDDEDEEEDDKFPKNLGKVLKEKESKTEE 257

Query:   259 WKQRITDGILNTGDVLKKQANKVSNHVQRWWSGIKAARSKKP--GKTEL 305
              K+ IT      G+ LK+ A KVSN V+RWW G+ ++ SKKP  GK+EL
Sbjct:   258 LKKTITKEFKKKGEALKRHAQKVSNRVRRWWKGLGSSSSKKPKSGKSEL 306


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      305       274   0.00078  115 3  11 23  0.40    34
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  212 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.41u 0.10s 25.51t   Elapsed:  00:00:01
  Total cpu time:  25.41u 0.10s 25.51t   Elapsed:  00:00:01
  Start:  Fri May 10 14:29:36 2013   End:  Fri May 10 14:29:37 2013

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