BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035921
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVT4|DRL37_ARATH Probable disease resistance protein At5g47250 OS=Arabidopsis
thaliana GN=At5g47250 PE=2 SV=1
Length = 843
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 91 ADWILKIDIVEQGDKLVLVEQEAEGQCNSECKTIERACQEI-MGYSDTDVAEYLYTSKPD 149
A W+ +++I+E+ K ++ A + + R +S ++ E ++ +
Sbjct: 69 ATWLSQVEIIEENTKQLMDVASARDASSQNASAVRRRLSTSGCWFSTCNLGEKVFKKLTE 128
Query: 150 IKSLVNYLCKDLSKACSTKPPPVLKNRIPGEPFVPKPAKEAEMERIMRSMEGMPGAPGMQ 209
+KSL KD + PPPV++ R+ + E E + + M G GM
Sbjct: 129 VKSLSG---KDFQEVTEQPPPPVVEVRLCQQTVGLDTTLEKTWESLRKDENRMLGIFGMG 185
Query: 210 MYSKEDLMNMKNFGGEDGDDNDDEDDDDESDFPKNLGKV 248
K L+ + N + D+ D ES ++GK+
Sbjct: 186 GVGKTTLLTLINNKFVEVSDDYDVVIWVESSKDADVGKI 224
>sp|O75665|OFD1_HUMAN Oral-facial-digital syndrome 1 protein OS=Homo sapiens GN=OFD1 PE=1
SV=1
Length = 1012
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 10/155 (6%)
Query: 15 ILLLSTCAPISYCAKKPVAGARKEDVPYITCQVCEKLASQLYHQVQKKQAQISPKKISEF 74
+L L P S K V+G+ KE+ ++LA YHQ K+ + + S F
Sbjct: 111 LLQLIKINPTSSLYKSLVSGSDKENQKGFLMHFLKELAE--YHQA-KESCNMETQTSSTF 167
Query: 75 EIIGIAENVCNLKKEEAD-WILKIDIVEQGDKLVLVEQEAEGQCNSECKTIERACQEIMG 133
+AE + + + AD + +I KL ++E E Q +E CQ++
Sbjct: 168 NRDSLAEKLQLIDDQFADAYPQRIKFESLEIKLNEYKREIEEQLRAEM------CQKLKF 221
Query: 134 YSDTDVAEYLYTSKPDIKSLVNYLCKDLSKACSTK 168
+ DT++A+ +K + + D KAC K
Sbjct: 222 FKDTEIAKIKMEAKKKYEKELTMFQNDFEKACQAK 256
>sp|Q6PA15|CCD22_XENLA Coiled-coil domain-containing protein 22 OS=Xenopus laevis
GN=ccdc22 PE=2 SV=1
Length = 632
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 123 TIERACQEIMGYSDTDVAEYLYTSKPDIKSLVNYLCKDLSKACS 166
++ +ACQ++ S+ +LY+S+PDI++L+ +L + L + S
Sbjct: 70 SLAQACQDLGYSSEVGYQTFLYSSEPDIRALLIFLAEKLPRDSS 113
>sp|Q9NXL9|MCM9_HUMAN DNA helicase MCM9 OS=Homo sapiens GN=MCM9 PE=1 SV=4
Length = 1143
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 150 IKSLVNYLCKDLSKACSTKPPPVLKNRIPGEPFVPKPAKEAEMERIMRSMEGMPGAPGMQ 209
+ L N+ S++ S PPP KNR P P P A M R + G+
Sbjct: 1055 LARLANFCFTPPSESKSKSPPPERKNRGERGPSSP-PTTTAPMRVSKRKSFQLRGSTEKL 1113
Query: 210 MYSKEDLMNMKNFGGEDGDDNDDED 234
+ SKE L + G E D + DE+
Sbjct: 1114 IVSKESLFTLPELGDEAFDCDWDEE 1138
>sp|Q9ULR0|ISY1_HUMAN Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1
PE=1 SV=3
Length = 285
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 34 GARKEDVPYITCQV-----CEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88
G KE P++ + EK Q+ ++ KK AQI + EF I + + + L +
Sbjct: 23 GKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLR 82
Query: 89 EEADWILKI 97
E+ W ++I
Sbjct: 83 EKGHWEVRI 91
>sp|Q6AYB3|ISY1_RAT Pre-mRNA-splicing factor ISY1 homolog OS=Rattus norvegicus
GN=Isy1 PE=2 SV=1
Length = 284
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 34 GARKEDVPYITCQV-----CEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88
G KE P++ + EK Q+ ++ KK AQI + EF I + + + L +
Sbjct: 23 GKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLR 82
Query: 89 EEADWILKI 97
E+ W ++I
Sbjct: 83 EKGHWEVRI 91
>sp|Q69ZQ2|ISY1_MOUSE Pre-mRNA-splicing factor ISY1 homolog OS=Mus musculus GN=Isy1
PE=1 SV=2
Length = 285
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 34 GARKEDVPYITCQV-----CEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88
G KE P++ + EK Q+ ++ KK AQI + EF I + + + L +
Sbjct: 23 GKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLR 82
Query: 89 EEADWILKI 97
E+ W ++I
Sbjct: 83 EKGHWEVRI 91
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 13/145 (8%)
Query: 105 KLVLVEQEAEGQCNSECKTIERACQEIMGYSDTDVAEYLYTS---KPDIKSLVNYLCKDL 161
+L++ + + C EC +R CQ +S S +P + +Y C L
Sbjct: 1467 RLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKL 1526
Query: 162 SKACSTKPP---PVLKNRIPGEPFV-------PKPAKEAEMERIMRSMEGMPGAPGMQMY 211
+PP P K + G P + PK + M+ + + G P +
Sbjct: 1527 CSEPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFV 1586
Query: 212 SKEDLMNMKNFGGEDGDDNDDEDDD 236
ED ++ D N+ +DD+
Sbjct: 1587 QLEDCSHIFEVQALDRYMNEQKDDE 1611
>sp|O67381|Y1369_AQUAE Uncharacterized protein aq_1369 OS=Aquifex aeolicus (strain VF5)
GN=aq_1369 PE=4 SV=1
Length = 260
Score = 31.2 bits (69), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 94 ILKIDIVEQGDKLVLVEQEAEGQCNSECKTIERACQEIMGY-----SDTDVAEYLYTSKP 148
I D VE G+KL+ + EG + +E ++++ Y +DV Y+ P
Sbjct: 130 IYHADFVEGGNKLIAAIKTEEGISTYDQLKLEEMMKKMVRYPRVVVYSSDVLTYIKDIYP 189
Query: 149 DIKSLVNYLCKDLSKACSTKP 169
D++S + ++++K + P
Sbjct: 190 DVQSKAYVIAREIAKETGSAP 210
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,146,581
Number of Sequences: 539616
Number of extensions: 5365253
Number of successful extensions: 36020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 31838
Number of HSP's gapped (non-prelim): 2589
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)