Query 035921
Match_columns 305
No_of_seqs 41 out of 43
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:46:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9l_A Granulysin; saposin fol 92.1 0.055 1.9E-06 41.0 1.7 37 43-88 2-38 (74)
2 3rfi_A Asp; PSI, saposin, hydr 90.2 0.19 6.6E-06 40.0 3.2 37 42-86 70-106 (108)
3 1nkl_A NK-lysin; saposin fold, 89.6 0.21 7.2E-06 37.4 2.8 38 43-88 2-39 (78)
4 4ddj_A Saposin-A, protein A; s 88.9 0.23 7.9E-06 36.9 2.6 40 41-88 2-41 (83)
5 1n69_A Saposin B; lipid bindin 88.3 0.33 1.1E-05 36.3 3.1 38 43-88 4-42 (81)
6 2gtg_A Proactivator polypeptid 87.6 0.67 2.3E-05 34.3 4.4 77 43-166 5-81 (83)
7 1of9_A Pore-forming peptide am 87.3 0.3 1E-05 36.5 2.4 36 43-87 3-38 (77)
8 2qyp_A Proactivator polypeptid 84.0 0.59 2E-05 35.4 2.6 38 43-88 6-43 (91)
9 2js9_A Saposin-like protein fa 81.1 0.48 1.7E-05 37.6 1.2 62 42-146 21-85 (99)
10 3bqp_A Proactivator polypeptid 81.1 1 3.5E-05 32.6 2.8 38 43-88 3-40 (80)
11 1qdm_A Prophytepsin; aspartic 57.8 14 0.00048 35.8 5.8 46 43-96 350-396 (478)
12 2a3m_A COG3005: nitrate/TMAO r 38.6 9.4 0.00032 31.0 0.9 10 43-52 50-59 (130)
13 3ay5_A Cyclin-D1-binding prote 31.4 15 0.00053 34.8 1.3 16 50-65 58-73 (360)
14 1ef4_A Subunit N, DNA-directed 27.0 28 0.00095 25.4 1.7 37 40-80 1-37 (55)
15 1ayz_A UBC2, ubiquitin-conjuga 23.0 22 0.00077 30.0 0.7 15 144-158 96-110 (169)
16 2yfw_B Histone H4, H4; cell cy 21.9 1.4E+02 0.0046 23.4 5.0 43 43-85 54-96 (103)
17 1tzy_D Histone H4-VI; histone- 21.3 1.4E+02 0.0048 23.3 4.9 43 43-85 54-96 (103)
No 1
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=92.13 E-value=0.055 Score=40.96 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=30.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcc
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k 88 (305)
+.|.+|+++++++...+ . .+ +|.+|+..++++|+...
T Consensus 2 ~~C~~C~~~v~~le~~l-~-----n~---Te~~I~~~L~~vC~~l~ 38 (74)
T 1l9l_A 2 RDYRTCLTIVQKLKKMV-D-----KP---TQRSVSNAATRVCRTGR 38 (74)
T ss_dssp HHHHHHHHHHHHHHHHC-S-----SC---CHHHHHHHHHHGGGSSC
T ss_pred CCChHHHHHHHHHHHHh-c-----cc---CHHHHHHHHHHHHHhCC
Confidence 46999999999887655 1 12 79999999999999765
No 2
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=90.16 E-value=0.19 Score=40.02 Aligned_cols=37 Identities=14% Similarity=0.385 Sum_probs=31.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCC
Q 035921 42 YITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNL 86 (305)
Q Consensus 42 yIrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp 86 (305)
-..|.+|++++..+..++...+ +|++|+..++++|+.
T Consensus 70 ~~~C~~Ce~~V~~ie~~L~~N~--------Te~eI~~~l~k~C~~ 106 (108)
T 3rfi_A 70 APLCTACEMAVVWMQNQLKQEG--------TKEKVLEYVNQLCEK 106 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHTSHH--------HHHHHHHHHHHHHTT
T ss_pred CCcChhHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHHhh
Confidence 4679999999999998876443 589999999999985
No 3
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=89.57 E-value=0.21 Score=37.40 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcc
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k 88 (305)
+.|++|+.+++.+...+. +..+|.+|...++++|+-..
T Consensus 2 ~~C~~C~~iv~~ve~~l~--------~~~t~~~I~~~l~~~C~~lp 39 (78)
T 1nkl_A 2 YFCESCRKIIQKLEDMVG--------PQPNEDTVTQAASQVCDKLK 39 (78)
T ss_dssp CHHHHHHHHHHHHHHHHC--------SSCCHHHHHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHhhCc
Confidence 469999999999887664 23479999999999999743
No 4
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=88.93 E-value=0.23 Score=36.94 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=31.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcc
Q 035921 41 PYITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88 (305)
Q Consensus 41 pyIrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k 88 (305)
+-+.|++|+.++..+-..+.. ..+|++|+..++++|+...
T Consensus 2 ~~~~C~~C~~~v~~~~~~l~~--------n~t~~~I~~~l~~~C~~lp 41 (83)
T 4ddj_A 2 GSLPCDICKDVVTAAGDMLKD--------NATEEEILVYLEKTCDWLP 41 (83)
T ss_dssp -CHHHHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHTTSC
T ss_pred CCCcchHHHHHHHHHHHHHHc--------CccHHHHHHHHHHHHHhCC
Confidence 457899999999888776652 1268999999999999875
No 5
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=88.26 E-value=0.33 Score=36.29 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=31.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCch-HHHHHHHHhhcCCcc
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISE-FEIIGIAENVCNLKK 88 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E-~dVie~iE~vCnp~k 88 (305)
..|++|+++++.+...+... -+| .+|++.++++|+...
T Consensus 4 ~~C~~C~~~V~~ve~~l~~n--------~t~~~~I~~~l~~~C~~lp 42 (81)
T 1n69_A 4 DVCQDCIQMVTDIQTAVRTN--------STFVQALVEHVKEECDRLG 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHGGGGC
T ss_pred CcchHHHHHHHHHHHHHHhC--------CcHHHHHHHHHHHHHHHcC
Confidence 46999999999998777632 267 899999999999875
No 6
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=87.63 E-value=0.67 Score=34.29 Aligned_cols=77 Identities=23% Similarity=0.521 Sum_probs=53.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcccccchheeeeeeecCCeeEEEeccccccccccch
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKKEEADWILKIDIVEQGDKLVLVEQEAEGQCNSECK 122 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k~eG~WI~~~DIvEkG~~L~lve~~~~gkC~~ECk 122 (305)
..|++|+.+++.+-..+. ...++.+|+..++++|+... .
T Consensus 5 ~~C~~C~~~v~~i~~~l~--------~~~t~~~I~~~l~~~C~~lp---------------------------------~ 43 (83)
T 2gtg_A 5 VYCEVCEFLVKEVTKLID--------NNKTEKEILDAFDKMCSKLP---------------------------------K 43 (83)
T ss_dssp CHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHTTSSC---------------------------------H
T ss_pred CcChhHHHHHHHHHHHHH--------cCCcHHHHHHHHHHHHHHCC---------------------------------C
Confidence 579999999999887765 12378999999999998765 1
Q ss_pred HHHHHHHHhhCCCCcchhhhhhccCCChHHHHHhhchhhhcccc
Q 035921 123 TIERACQEIMGYSDTDVAEYLYTSKPDIKSLVNYLCKDLSKACS 166 (305)
Q Consensus 123 TI~rACe~vmd~~dtDvae~L~~~~~~~~al~~~lC~d~S~aC~ 166 (305)
....-|..+++..-..+.++|.+ ..+++ .+|..+ +.|.
T Consensus 44 ~~~~~C~~~V~~y~~~ii~~l~~-~~~P~----~iC~~l-~lC~ 81 (83)
T 2gtg_A 44 SLSEECQEVVDTYGSSILSILLE-EVSPE----LVCSML-HLCS 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TCCHH----HHHHHT-TSCC
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-CCCHH----HHHHhc-CCCC
Confidence 24556777776544556677664 34565 457543 6665
No 7
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=87.33 E-value=0.3 Score=36.53 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=30.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCc
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLK 87 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~ 87 (305)
..|++|+.+++.+-+.+. .. +|.+|+..++++|+..
T Consensus 3 ~~C~~C~~vv~~ve~~l~--------~n-t~~~I~~~l~~~C~~l 38 (77)
T 1of9_A 3 ILCNLCTGLINTLENLLT--------TK-GADKVKDYISSLCNKA 38 (77)
T ss_dssp SSHHHHHHHHHHHHHHCS--------SS-CSHHHHHHHHHHHTTC
T ss_pred CcchhHHHHHHHHHHHHH--------HC-cHHHHHHHHHHHHHcC
Confidence 469999999998876554 34 7899999999999976
No 8
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=84.02 E-value=0.59 Score=35.40 Aligned_cols=38 Identities=24% Similarity=0.525 Sum_probs=31.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcc
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k 88 (305)
..|++|+.++..+-..+... .++.+|+..++++|+...
T Consensus 6 ~~C~~C~~vv~~i~~~l~~n--------~t~~~I~~~l~~~C~~lp 43 (91)
T 2qyp_A 6 VYCEVCEFLVKEVTKLIDNN--------KTEKEILDAFDKMCSKLP 43 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTSH--------HHHHHHHHHHHHHHHTSC
T ss_pred CcchHHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHHHCC
Confidence 57999999999998777532 257999999999999765
No 9
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=81.13 E-value=0.48 Score=37.62 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=45.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcccccchheeeeeeecCCeeEEEeccccccccccc
Q 035921 42 YITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKKEEADWILKIDIVEQGDKLVLVEQEAEGQCNSEC 121 (305)
Q Consensus 42 yIrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k~eG~WI~~~DIvEkG~~L~lve~~~~gkC~~EC 121 (305)
-..|++|+++++.+...+ .-+|.+|...++++|+..-
T Consensus 21 ~~~C~~C~~vV~~ve~~l----------n~t~~~I~~~L~~~C~~lp--------------------------------- 57 (99)
T 2js9_A 21 ALSCQMCELVVKKYEGSA----------DKDANVIKKDFDAECKKLF--------------------------------- 57 (99)
T ss_dssp SSTHHHHHHHHHHHTTTS----------SCCHHHHHHHHHHHHHTGG---------------------------------
T ss_pred CCcchhHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHcCC---------------------------------
Confidence 367999999999988666 1268999999999998654
Q ss_pred hH---HHHHHHHhhCCCCcchhhhhhcc
Q 035921 122 KT---IERACQEIMGYSDTDVAEYLYTS 146 (305)
Q Consensus 122 kT---I~rACe~vmd~~dtDvae~L~~~ 146 (305)
++ +..-|+.+++.--..+.++|.++
T Consensus 58 ~~ipf~~~~C~~~V~~y~~~II~~L~~~ 85 (99)
T 2js9_A 58 HTIPFGTRECDHYVNSKVDPIIHELEGG 85 (99)
T ss_dssp GGSTTHHHHHHTTTTTTHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23 56778888874444455776654
No 10
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=81.11 E-value=1 Score=32.61 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=30.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCcc
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKK 88 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k 88 (305)
..|++|+.++..+-..+. ..-++.+|+..++++|+...
T Consensus 3 ~~C~~C~~~v~~i~~~l~--------~~~t~~~I~~~l~~~C~~lp 40 (80)
T 3bqp_A 3 GFCEVCKKLVGYLDRNLE--------KNSTKQEILAALEKGCSFLP 40 (80)
T ss_dssp TTHHHHHHHHHHHHHHSC--------TTCCHHHHHHHHHHHGGGSC
T ss_pred CcchhHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHhCC
Confidence 469999999998876553 22368999999999999765
No 11
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=57.83 E-value=14 Score=35.80 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=36.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcCCccc-ccchhee
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCNLKKE-EADWILK 96 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCnp~k~-eG~WI~~ 96 (305)
..|.+||.++..+..+++ ..-+|.+|+..+.++|+.... .|+|+..
T Consensus 350 ~~C~~Ce~~v~~~~~~l~--------~n~t~~~I~~~~~~~C~~~~~~~g~~~v~ 396 (478)
T 1qdm_A 350 PMCSACEMAVVWMQNQLA--------QNKTQDLILDYVNQLCNRLPSPMGESAVD 396 (478)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TTCCHHHHHHHHHHHTTCBCCSSSCCEEC
T ss_pred ccchHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHhhccCCCCCeEEee
Confidence 679999999999987766 123789999999999997754 5777543
No 12
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C subunit; tetraheme cytochrome, electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=38.63 E-value=9.4 Score=31.03 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=7.8
Q ss_pred ccchhHHHHH
Q 035921 43 ITCQVCEKLA 52 (305)
Q Consensus 43 IrC~VCe~ia 52 (305)
|.|..|..-+
T Consensus 50 ~~C~~CH~~~ 59 (130)
T 2a3m_A 50 YQCADCHHPV 59 (130)
T ss_dssp SCGGGTSCCB
T ss_pred CCchhcCCCC
Confidence 7899998643
No 13
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=31.38 E-value=15 Score=34.85 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 035921 50 KLASQLYHQVQKKQAQ 65 (305)
Q Consensus 50 ~iak~ly~~v~~k~~~ 65 (305)
..++.+.+++.+.---
T Consensus 58 ~~a~~l~~~aTKlsLl 73 (360)
T 3ay5_A 58 EAAVTVSREATTLTIV 73 (360)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHhhhh
Confidence 5667777776655444
No 14
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=27.01 E-value=28 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.5
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHH
Q 035921 40 VPYITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIA 80 (305)
Q Consensus 40 vpyIrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~i 80 (305)
|-+|||=.|.++..+.|....++.++- .+|.++|..+
T Consensus 1 iiPVRCFTCGkvi~~~we~y~~~~~~~----~~~~~~LD~L 37 (55)
T 1ef4_A 1 MIPVRCLSCGKPVSAYFNEYQRRVADG----EDPKDVLDDL 37 (55)
T ss_dssp CCSSSCSCTTSCCHHHHHHHHHHHHHT----CCHHHHHHHH
T ss_pred CCCeecCCCCCChhHHHHHHHHHHHcC----CCHHHHHHHc
Confidence 356999999999999999988777653 2466776653
No 15
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=22.95 E-value=22 Score=30.05 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=8.5
Q ss_pred hccCCChHHHHHhhc
Q 035921 144 YTSKPDIKSLVNYLC 158 (305)
Q Consensus 144 ~~~~~~~~al~~~lC 158 (305)
|+-.-++.++.-.+.
T Consensus 96 WsP~~~i~~vL~si~ 110 (169)
T 1ayz_A 96 WTPTYDVASILTSIQ 110 (169)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHH
Confidence 665556665555554
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=21.86 E-value=1.4e+02 Score=23.40 Aligned_cols=43 Identities=5% Similarity=0.082 Sum_probs=31.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcC
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCN 85 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCn 85 (305)
--.+|.+....++.++....-+...+|.|+..||+-+++....
T Consensus 54 ~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 54 EVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 3445666666666666666666667888999999999998754
No 17
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=21.25 E-value=1.4e+02 Score=23.29 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=31.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHhhcC
Q 035921 43 ITCQVCEKLASQLYHQVQKKQAQISPKKISEFEIIGIAENVCN 85 (305)
Q Consensus 43 IrC~VCe~iak~ly~~v~~k~~~~~pkKv~E~dVie~iE~vCn 85 (305)
--.+|.+....++.++....-+...+|.|+..||+-+++....
T Consensus 54 ~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 54 ETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 3445666666666666666666667888999999999998753
Done!