BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035922
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 157/541 (29%), Positives = 236/541 (43%), Gaps = 70/541 (12%)
Query: 82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMS- 140
KL+G S I + L+ L++ +N F IPP GEIP +S
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 141 RCSNIILMDLSVNQLLGNIPPEFG----------------------SLSKIKDLRSF--- 175
C + +DLS N G +PP FG +L K++ L+
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 176 MNNLTGSIPSSLGNLS-SIIRLSLTYNNIARSI-PDTLGYLEN-LSFLSLGGNMLSGTIP 232
N +G +P SL NLS S++ L L+ NN + I P+ +N L L L N +G IP
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 233 SSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIP 292
++ N S + + + N + G IP G +L L+ + N G IP
Sbjct: 409 PTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN-----------MLEGEIP 456
Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
+ + + TL +L LD N + G IP G+ NL + + NN+L+G IP IG L+NL +
Sbjct: 457 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF--------- 403
L +S N FSGNIP +G+ + LI L+++ N GTIP+++ + I NF
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 575
Query: 404 ----SKNNLSGT--------IPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLD 451
K G I + + G N ++ LD
Sbjct: 576 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 635
Query: 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511
+S N+LSG IP +GS L L + N G IP + LRGL++ D + N L G IP+
Sbjct: 636 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 695
Query: 512 FLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNS 571
++ +L ++LS N+L +P G + + N LCG PRC +N+
Sbjct: 696 AMSALTMLTEIDLSNNNLSGP-IPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNA 750
Query: 572 S 572
Sbjct: 751 D 751
Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 177/395 (44%), Gaps = 40/395 (10%)
Query: 131 IGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN- 189
I G++ +SRC N+ +D+S N I P G S ++ L N L+G ++
Sbjct: 187 ISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 190 ---------------------LSSIIRLSLTYNNIARSIPDTL-GYLENLSFLSLGGNML 227
L S+ LSL N IPD L G + L+ L L GN
Sbjct: 244 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 303
Query: 228 SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXF 287
G +P + S + + ++ N G +P+D + L+ + FN F+
Sbjct: 304 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---------- 353
Query: 288 GGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGK--LVNLRRLYVWNNKLSGTIPSAIG 345
G +PE ++N S +L +L L +N G I P + + L+ LY+ NN +G IP +
Sbjct: 354 -GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSK 405
+ L L +S N SG IP S+G+L L L++ N L+G IP L K+L +
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 406 NNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL 465
N+L+G I P N TG +P +G L+NL +L +S N SG IP L
Sbjct: 473 NDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 466 GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDF 500
G C SL L + N F G IP+++ G +F
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 566
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 44/360 (12%)
Query: 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI 255
L ++ NN + IP LG L L + GN LSG +I + + ++ N+ G I
Sbjct: 202 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 256 PLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGS 315
P L +LQ+ + N FT G IP+ +S TL L L N +G+
Sbjct: 261 P---PLPLKSLQYLSLAENKFT-----------GEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 316 IPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKM- 373
+PP G L L + +N SG +P + ++ L++L +S N FSG +P S+ NL
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 374 LIQLEVSEN---------------------FLQ-----GTIPSSLCQCKSLIGINFSKNN 407
L+ L++S N +LQ G IP +L C L+ ++ S N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 408 LSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
LSGTIP N G +P E+ +K L L + N L+GEIP L +
Sbjct: 427 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
CT+L + + N+ G IP + L L++ + N+ SG IP L + L ++L+ N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 306 FLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGN--RFS 361
FL N+ I GS+ G +L L + N LSG T +++G L+ L +S N F
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 362 GNIPLSVGNLKM--LIQLEVSENFLQGT--IPSSLCQ-CKSLIGINFSKNNLSGTIPPQX 416
G + G LK+ L L++S N + G + L C L + S N +SG +
Sbjct: 139 GKVS---GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---D 192
Query: 417 XXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
N+F+ +P +G+ L LDISGN LSG+ ++ +CT L+ L +
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 477 QGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEIPKFLAG 515
N+F GPIP L+SL+ LS+ A+N +GEIP FL+G
Sbjct: 252 SSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLSG 288
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 157/541 (29%), Positives = 236/541 (43%), Gaps = 70/541 (12%)
Query: 82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATMS- 140
KL+G S I + L+ L++ +N F IPP GEIP +S
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 141 RCSNIILMDLSVNQLLGNIPPEFG----------------------SLSKIKDLRSF--- 175
C + +DLS N G +PP FG +L K++ L+
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 176 MNNLTGSIPSSLGNLS-SIIRLSLTYNNIARSI-PDTLGYLEN-LSFLSLGGNMLSGTIP 232
N +G +P SL NLS S++ L L+ NN + I P+ +N L L L N +G IP
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 233 SSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIP 292
++ N S + + + N + G IP G +L L+ + N G IP
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLN-----------MLEGEIP 459
Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
+ + + TL +L LD N + G IP G+ NL + + NN+L+G IP IG L+NL +
Sbjct: 460 QELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF--------- 403
L +S N FSGNIP +G+ + LI L+++ N GTIP+++ + I NF
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 404 ----SKNNLSGT--------IPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLD 451
K G I + + G N ++ LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638
Query: 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511
+S N+LSG IP +GS L L + N G IP + LRGL++ D + N L G IP+
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698
Query: 512 FLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTKNNS 571
++ +L ++LS N+L +P G + + N LCG PRC +N+
Sbjct: 699 AMSALTMLTEIDLSNNNLSGP-IPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNA 753
Query: 572 S 572
Sbjct: 754 D 754
Score = 135 bits (339), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 177/395 (44%), Gaps = 40/395 (10%)
Query: 131 IGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN- 189
I G++ +SRC N+ +D+S N I P G S ++ L N L+G ++
Sbjct: 190 ISGDV--DVSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 190 ---------------------LSSIIRLSLTYNNIARSIPDTL-GYLENLSFLSLGGNML 227
L S+ LSL N IPD L G + L+ L L GN
Sbjct: 247 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 228 SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXF 287
G +P + S + + ++ N G +P+D + L+ + FN F+
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---------- 356
Query: 288 GGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGK--LVNLRRLYVWNNKLSGTIPSAIG 345
G +PE ++N S +L +L L +N G I P + + L+ LY+ NN +G IP +
Sbjct: 357 -GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSK 405
+ L L +S N SG IP S+G+L L L++ N L+G IP L K+L +
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 406 NNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL 465
N+L+G I P N TG +P +G L+NL +L +S N SG IP L
Sbjct: 476 NDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 466 GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDF 500
G C SL L + N F G IP+++ G +F
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 163/360 (45%), Gaps = 44/360 (12%)
Query: 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI 255
L ++ NN + IP LG L L + GN LSG +I + + ++ N+ G I
Sbjct: 205 LDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 256 PLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGS 315
P L +LQ+ + N FT G IP+ +S TL L L N +G+
Sbjct: 264 P---PLPLKSLQYLSLAENKFT-----------GEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 316 IPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKM- 373
+PP G L L + +N SG +P + ++ L++L +S N FSG +P S+ NL
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 374 LIQLEVSEN---------------------FLQ-----GTIPSSLCQCKSLIGINFSKNN 407
L+ L++S N +LQ G IP +L C L+ ++ S N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 408 LSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
LSGTIP N G +P E+ +K L L + N L+GEIP L +
Sbjct: 430 LSGTIP-SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
CT+L + + N+ G IP + L L++ + N+ SG IP L + L ++L+ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 21/220 (9%)
Query: 306 FLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGN--RFS 361
FL N+ I GS+ G +L L + N LSG T +++G L+ L +S N F
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 362 GNIPLSVGNLKM--LIQLEVSENFLQGT--IPSSLCQ-CKSLIGINFSKNNLSGTIPPQX 416
G + G LK+ L L++S N + G + L C L + S N +SG +
Sbjct: 142 GKV---SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV---D 195
Query: 417 XXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476
N+F+ +P +G+ L LDISGN LSG+ ++ +CT L+ L +
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 477 QGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEIPKFLAG 515
N+F GPIP L+SL+ LS+ A+N +GEIP FL+G
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSL---AENKFTGEIPDFLSG 291
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 14/256 (5%)
Query: 316 IPPGIGKLVNLRRLYVWN-NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374
IP + L L LY+ N L G IP AI L L L ++ SG IP + +K L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFT 434
+ L+ S N L GT+P S+ +L+GI F N +SG IP RN T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 435 GSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKF---YGPIPSSLRS 491
G +P NL NL +D+S N+L G+ + GS + +K+ + N G + S ++
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KN 245
Query: 492 LRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGN 551
L GL D N + G +P+ L K L ++N+S+N+L +P G ++ ++ N
Sbjct: 246 LNGL---DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQGGNLQRFDVSAYANN 301
Query: 552 SKLCGGIPKLQFPRCT 567
LCG P CT
Sbjct: 302 KCLCGS----PLPACT 313
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 90/348 (25%), Positives = 141/348 (40%), Gaps = 66/348 (18%)
Query: 43 NETDREALLEFKSKITVDPFGVLGSWNESSHFCK--WH-------------ESLKLAG-- 85
N D++ALL+ K + +P L SW ++ C W +L L+G
Sbjct: 4 NPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 86 -----SISPYIGNLSFLRRLHLDN-NNFTHAIPPEIXXXXXXXXXXXXXXSIGGEIPATM 139
I + NL +L L++ NN IPP I ++ G IP +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 140 SRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII-RLSL 198
S+ ++ +D S N L G +PP SL + + N ++G+IP S G+ S + +++
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
+ N + IP T L NL+F+ L NML G +S+ S T + L + ++ D
Sbjct: 182 SRNRLTGKIPPTFANL-NLAFVDLSRNMLEGD--ASVLFGSDKNTQKIHL--AKNSLAFD 236
Query: 259 FGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPP 318
G S L L L NN+I+G++P
Sbjct: 237 LGKV----------------------------------GLSKNLNGLDLRNNRIYGTLPQ 262
Query: 319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPL 366
G+ +L L L V N L G IP G+LQ + + N+ PL
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 29/224 (12%)
Query: 289 GLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ 348
G IP I+ T L L++ + + G+IP + ++ L L N LSGT+P +I L
Sbjct: 91 GPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 349 NLRMLGMSGNRFSGNIPLSVGNL-KMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN 407
NL + GNR SG IP S G+ K+ + +S N L G IP + +N + +
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------LNLAFVD 203
Query: 408 LSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467
LS RN G + G+ KN + ++ N L+ ++ +G
Sbjct: 204 LS--------------------RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242
Query: 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511
+L L ++ N+ YG +P L L+ L + + NNL GEIP+
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFG 270
+ YL N+ +L+LGGN L S++ +++T + N++Q +P L NL+
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 271 IVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRL 329
+V N +P+ + + T L L+L +N++ S+P G+ KL NL RL
Sbjct: 116 LVENQLQS------------LPDGVFDKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRL 162
Query: 330 YVWNNKLSGTIPSAIGD-LQNLRMLGMSGNRF 360
+ NN+L ++P + D L L+ L ++ N+
Sbjct: 163 DLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQL 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 18/138 (13%)
Query: 211 LGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGNIPLDFGFTLPNLQHF 269
L L NL++L L GN L ++P+ +F++ +++ +V N++Q +P L NL +
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYL 138
Query: 270 GIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRR 328
+ N +P+ + + T L L LDNN++ S+P G+ KL L++
Sbjct: 139 YLYHNQLQS------------LPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQ 185
Query: 329 LYVWNNKLSGTIPSAIGD 346
L + +N+L ++P + D
Sbjct: 186 LSLNDNQLK-SVPDGVFD 202
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 300 TTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSG 357
T L L L N++ S+P G+ KL NL+ L + N+L ++P + D L NL L +
Sbjct: 85 TNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 358 NRFSGNIPLSV-GNLKMLIQLEVSENFLQG 386
N+ +P V L L +L++ N LQ
Sbjct: 143 NQLQS-LPKGVFDKLTNLTRLDLDNNQLQS 171
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 150/369 (40%), Gaps = 68/369 (18%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
I D L L NL+ L L N +S S++ +S+ S N++ PL L
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPL---ANL 172
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
L+ I N ++ T L SL NN+I P GI L
Sbjct: 173 TTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI--L 216
Query: 324 VNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
NL L + N+L GT+ S L NL L ++ N+ S PLS L L +L++
Sbjct: 217 TNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
N + P L +L + ++N L P +
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP---------------------------I 301
Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAG 357
Query: 502 QNNLSGEIP 510
N +S P
Sbjct: 358 HNQISDLTP 366
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 21/232 (9%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L L L NN+I P + L NL RL + +N +S SA+ L +L+ L S N+
Sbjct: 107 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQ 162
Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLIGINFSKNNLSGTIPPQXXX 418
+ PL NL L +L++S N + ++ + L +SLI NN I P
Sbjct: 163 VTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITPLGIL 216
Query: 419 XXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
+ G+L +L NL LD++ N +S P+S T L +L +
Sbjct: 217 TNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530
N+ P L L L+ + +N L P ++ K L + L +N++
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 26/205 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 189 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 299
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ NNK+S S++ +L N+
Sbjct: 300 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFSNNKVSDV--SSLANLTNINW 353
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQL 377
L N+ S PL NL + QL
Sbjct: 354 LSAGHNQISDLTPL--ANLTRITQL 376
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 150/369 (40%), Gaps = 68/369 (18%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
I D L L NL+ L L N +S S++ +S+ S N++ PL L
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKPL---ANL 172
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
L+ I N ++ T L SL NN+I P GI L
Sbjct: 173 TTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI--L 216
Query: 324 VNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
NL L + N+L GT+ S L NL L ++ N+ S PLS L L +L++
Sbjct: 217 TNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
N + P L +L + ++N L P +
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP---------------------------I 301
Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 357
Query: 502 QNNLSGEIP 510
N +S P
Sbjct: 358 HNQISDLTP 366
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 21/232 (9%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L L L NN+I P + L NL RL + +N +S SA+ L +L+ L S N+
Sbjct: 107 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQ 162
Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLIGINFSKNNLSGTIPPQXXX 418
+ PL NL L +L++S N + ++ + L +SLI NN I P
Sbjct: 163 VTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITPLGIL 216
Query: 419 XXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
+ G+L +L NL LD++ N +S P+S T L +L +
Sbjct: 217 TNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530
N+ P L L L+ + +N L P ++ K L + L +N++
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 189 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 299
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ +NNK+S S++ +L N+
Sbjct: 300 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQL 377
L N+ S PL NL + QL
Sbjct: 354 LSAGHNQISDLTPL--ANLTRITQL 376
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 150/369 (40%), Gaps = 68/369 (18%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
I D L L NL+ L L N +S S++ +S+ + N++ PL L
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPL---ANL 172
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323
L+ I N ++ T L SL NN+I P GI L
Sbjct: 173 TTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI--L 216
Query: 324 VNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
NL L + N+L GT+ S L NL L ++ N+ S PLS L L +L++
Sbjct: 217 TNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEV 441
N + P L +L + ++N L P +
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP---------------------------I 301
Query: 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501
NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 302 SNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAG 357
Query: 502 QNNLSGEIP 510
N +S P
Sbjct: 358 HNQISDLTP 366
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 101/232 (43%), Gaps = 21/232 (9%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L L L NN+I P + L NL RL + +N +S SA+ L +L+ L S N+
Sbjct: 107 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQ 162
Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLIGINFSKNNLSGTIPPQXXX 418
+ PL NL L +L++S N + ++ + L +SLI NN I P
Sbjct: 163 VTDLKPL--ANLTTLERLDISSNKVSDISVLAKLTNLESLIA----TNNQISDITPLGIL 216
Query: 419 XXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478
+ G+L +L NL LD++ N +S P+S T L +L +
Sbjct: 217 TNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGA 270
Query: 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530
N+ P L L L+ + +N L P ++ K L + L +N++
Sbjct: 271 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 88/205 (42%), Gaps = 26/205 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 189 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 239
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 240 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 299
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ +NNK+S S++ +L N+
Sbjct: 300 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 353
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQL 377
L N+ S PL NL + QL
Sbjct: 354 LSAGHNQISDLTPL--ANLTRITQL 376
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 72/185 (38%), Gaps = 57/185 (30%)
Query: 77 WHESLKLAG----SISPYIGNLSFLRRLHLDNNNFTHAIPPEIXXXXXXXXXXXXXXSIG 132
WH +L L+ +IS I FL RL+L+ N+ T
Sbjct: 226 WH-ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT------------------------ 260
Query: 133 GEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSS 192
E+PA + SN+ ++DLS N+ L ++P E GS ++K F +N+ ++P GNL
Sbjct: 261 -ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFY-FFDNMVTTLPWEFGNLC- 316
Query: 193 IIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ 252
NL FL + GN L I S+T L +
Sbjct: 317 -----------------------NLQFLGVEGNPLEKQF-LKILTEKSVTGLIFYLRDNR 352
Query: 253 GNIPL 257
IPL
Sbjct: 353 PEIPL 357
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 260 GFTLPNLQHFGIVFNNFTEXXXXXXXXFGG---LIPECISNFSTTLASLFLDNNKIFGSI 316
L NLQ F I N F G +P I N S L L L +N++ S+
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSN-LRVLDLSHNRL-TSL 285
Query: 317 PPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQ 376
P +G L+ Y ++N ++ T+P G+L NL+ LG+ GN PL LK+L +
Sbjct: 286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN------PLEKQFLKILTE 338
Query: 377 LEVS 380
V+
Sbjct: 339 KSVT 342
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLE 472
LP E+ NL NL VLD+S N L+ +P LGSC L+
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 56/189 (29%)
Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN 363
+L L N +IF +I I K L RLY+ N L+ +P+ I +L NLR+L +S NR +
Sbjct: 228 ALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-- 283
Query: 364 IPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXX 423
++P+ L C L F N ++
Sbjct: 284 -----------------------SLPAELGSCFQLKYFYFFDNMVT-------------- 306
Query: 424 XXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI--PISLGSCTSLEKLLMQGNKF 481
+LP E GNL NL L + GN L + ++ S T L ++ N+
Sbjct: 307 ------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGL-IFYLRDNRP 353
Query: 482 YGPIPSSLR 490
P+P R
Sbjct: 354 EIPLPHERR 362
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 148/371 (39%), Gaps = 73/371 (19%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 69 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 123
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG--F 261
I D L L NL+ L L N +S S++ +S+ S GN D
Sbjct: 124 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF------GNQVTDLKPLA 174
Query: 262 TLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
L L+ I N ++ T L SL NN+I P GI
Sbjct: 175 NLTTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI- 219
Query: 322 KLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
L NL L + N+L GT+ S L NL L ++ N+ S PLS L L +L++
Sbjct: 220 -LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKL 272
Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPI 439
N + P L +L + ++N L P
Sbjct: 273 GANQISNISP--LAGLTALTNLELNENQLEDISP-------------------------- 304
Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
+ NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 305 -ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359
Query: 500 FAQNNLSGEIP 510
N +S P
Sbjct: 360 AGHNQISDLTP 370
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 193 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 243
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 303
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ +NNK+S S++ +L N+
Sbjct: 304 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 357
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
L N+ S PL NL + QL +++
Sbjct: 358 LSAGHNQISDLTPL--ANLTRITQLGLND 384
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 38/251 (15%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L + ++NN+I P + L NL L ++NN+++ P + +L NL L +S N
Sbjct: 90 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 145
Query: 360 FSGNIPLS-------------------VGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLI 399
S LS + NL L +L++S N + ++ + L +SLI
Sbjct: 146 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 205
Query: 400 GINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
NN I P + G+L +L NL LD++ N +S
Sbjct: 206 A----TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISN 257
Query: 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519
P+S T L +L + N+ P L L L+ + +N L P ++ K L
Sbjct: 258 LAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311
Query: 520 ENVNLSYNDLG 530
+ L +N++
Sbjct: 312 TYLTLYFNNIS 322
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 148/371 (39%), Gaps = 73/371 (19%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 68 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 122
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFG--F 261
I D L L NL+ L L N +S S++ +S+ S GN D
Sbjct: 123 ITDI-DPLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF------GNQVTDLKPLA 173
Query: 262 TLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIG 321
L L+ I N ++ T L SL NN+I P GI
Sbjct: 174 NLTTLERLDISSNKVSDISVLAKL--------------TNLESLIATNNQISDITPLGI- 218
Query: 322 KLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379
L NL L + N+L GT+ S L NL L ++ N+ S PLS L L +L++
Sbjct: 219 -LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTELKL 271
Query: 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPI 439
N + P L +L + ++N L P
Sbjct: 272 GANQISNISP--LAGLTALTNLELNENQLEDISP-------------------------- 303
Query: 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499
+ NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 304 -ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLS 358
Query: 500 FAQNNLSGEIP 510
N +S P
Sbjct: 359 AGHNQISDLTP 369
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 38/250 (15%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L + ++NN+I P + L NL L ++NN+++ P + +L NL L +S N
Sbjct: 89 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 144
Query: 360 FSGNIPLS-------------------VGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLI 399
S LS + NL L +L++S N + ++ + L +SLI
Sbjct: 145 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 204
Query: 400 GINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
NN I P + G+L +L NL LD++ N +S
Sbjct: 205 A----TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISN 256
Query: 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519
P+S T L +L + N+ P L L L+ + +N L P ++ K L
Sbjct: 257 LAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 310
Query: 520 ENVNLSYNDL 529
+ L +N++
Sbjct: 311 TYLTLYFNNI 320
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 192 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 242
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 243 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 302
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ NNK+S S++ +L N+
Sbjct: 303 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINW 356
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
L N+ S PL NL + QL +++
Sbjct: 357 LSAGHNQISDLTPL--ANLTRITQLGLND 383
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 152/374 (40%), Gaps = 79/374 (21%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
I D L L NL+ L L N +S I+ S + + Q L+FG +
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISD-----------ISALSGLTSLQQ----LNFGNQV 162
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS-----TTLASLFLDNNKIFGSIPP 318
+L+ N T + +S+ S T L SL NN+I P
Sbjct: 163 TDLKPLA----NLTTLERL------DISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 319 GIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQ 376
GI L NL L + N+L GT+ S L NL L ++ N+ S PLS L L +
Sbjct: 213 GI--LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTE 264
Query: 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGS 436
L++ N + P L +L + ++N L P
Sbjct: 265 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP----------------------- 299
Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
+ NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 300 ----ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSD--VSSLANLTNIN 351
Query: 497 VWDFAQNNLSGEIP 510
N +S P
Sbjct: 352 WLSAGHNQISDLTP 365
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 38/251 (15%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L + ++NN+I P + L NL L ++NN+++ P + +L NL L +S N
Sbjct: 85 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 140
Query: 360 FSGNIPLS-------------------VGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLI 399
S LS + NL L +L++S N + ++ + L +SLI
Sbjct: 141 ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 200
Query: 400 GINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
NN I P + G+L +L NL LD++ N +S
Sbjct: 201 A----TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISN 252
Query: 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519
P+S T L +L + N+ P L L L+ + +N L P ++ K L
Sbjct: 253 LAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 306
Query: 520 ENVNLSYNDLG 530
+ L +N++
Sbjct: 307 TYLTLYFNNIS 317
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 188 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 238
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 239 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 298
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ NNK+S S++ +L N+
Sbjct: 299 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFSNNKVSDV--SSLANLTNINW 352
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
L N+ S PL NL + QL +++
Sbjct: 353 LSAGHNQISDLTPL--ANLTRITQLGLND 379
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 152/374 (40%), Gaps = 79/374 (21%)
Query: 144 NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI 203
N+ ++ S NQL P +L+K+ D+ MNN + + L NL+++ L+L +NN
Sbjct: 64 NLTQINFSNNQLTDITP--LKNLTKLVDI--LMNNNQIADITPLANLTNLTGLTL-FNNQ 118
Query: 204 ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTL 263
I D L L NL+ L L N +S I+ S + + Q L+FG +
Sbjct: 119 ITDI-DPLKNLTNLNRLELSSNTISD-----------ISALSGLTSLQQ----LNFGNQV 162
Query: 264 PNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS-----TTLASLFLDNNKIFGSIPP 318
+L+ N T + +S+ S T L SL NN+I P
Sbjct: 163 TDLKPLA----NLTTLERL------DISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 319 GIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQ 376
GI L NL L + N+L GT+ S L NL L ++ N+ S PLS L L +
Sbjct: 213 GI--LTNLDELSLNGNQLKDIGTLAS----LTNLTDLDLANNQISNLAPLS--GLTKLTE 264
Query: 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGS 436
L++ N + P L +L + ++N L P
Sbjct: 265 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP----------------------- 299
Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
+ NLKNL L + N +S P+S S T L++L NK SSL +L ++
Sbjct: 300 ----ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNIN 351
Query: 497 VWDFAQNNLSGEIP 510
N +S P
Sbjct: 352 WLSAGHNQISDLTP 365
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 26/209 (12%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS--GTIPSSIFNRS 239
S+ + L NL S+I T N I+ P LG L NL LSL GN L GT+ S +
Sbjct: 188 SVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELSLNGNQLKDIGTLAS----LT 238
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
++T + N++ PL L L+ +N + L + + S
Sbjct: 239 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS 298
Query: 300 -------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRM 352
T +L+ +N I P + L L+RL+ +NNK+S S++ +L N+
Sbjct: 299 PISNLKNLTYLTLYFNN---ISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINW 352
Query: 353 LGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381
L N+ S PL NL + QL +++
Sbjct: 353 LSAGHNQISDLTPL--ANLTRITQLGLND 379
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 38/251 (15%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L + ++NN+I P + L NL L ++NN+++ P + +L NL L +S N
Sbjct: 85 TKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 140
Query: 360 FSGNIPLS-------------------VGNLKMLIQLEVSENFLQG-TIPSSLCQCKSLI 399
S LS + NL L +L++S N + ++ + L +SLI
Sbjct: 141 ISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 200
Query: 400 GINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459
NN I P + G+L +L NL LD++ N +S
Sbjct: 201 A----TNNQISDITPLGILTNLDELSLNGNQLKDIGTL----ASLTNLTDLDLANNQISN 252
Query: 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519
P+S T L +L + N+ P L L L+ + +N L P ++ K L
Sbjct: 253 LAPLS--GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 306
Query: 520 ENVNLSYNDLG 530
+ L +N++
Sbjct: 307 TYLTLYFNNIS 317
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 21/192 (10%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SS 240
+IPS++ + +L L N ++ L L L L N L T+P+ IF +
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGI-----------VFNNFTEXXXXXXXXFGG 289
+ T V N++Q +P+ L NL + VF++ T+ +
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG-YNE 144
Query: 290 L--IPECISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGD 346
L +P+ + + T+L L L NN++ +P G KL L+ L + NN+L A
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 347 LQNLRMLGMSGN 358
L+ L+ML + N
Sbjct: 204 LEKLKMLQLQEN 215
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 296 SNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAI-GDLQNLRMLG 354
SN L L +NK+ +L LR LY+ +NKL T+P+ I +L+NL L
Sbjct: 33 SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91
Query: 355 MSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP 389
++ N+ +P+ V L L +L + N L+ P
Sbjct: 92 VTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPP 126
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 37/101 (36%)
Query: 136 PATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR 195
P + + + L N+L F L+ +K+LR + N L + L+ +
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236
L L N + R LE L L L N T I+
Sbjct: 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 19/173 (10%)
Query: 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFS--GNIPLSVGNLKMLIQLEVSENFLQGTIPS 390
NN L+ T+ G L L L + N+ I +K L QL++S+N +
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 391 SLCQ-CKSLIGINFSKNNLSGTI----PPQXXXXXXXXXXXXXXRNHFTGSLPIEVGNLK 445
C KSL+ +N S N L+ TI PP+ ++ S+P +V L+
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL--------HSNKIKSIPKQVVKLE 444
Query: 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVW 498
L L+++ N L TSL+K+ + N P S + LS W
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN----PWDCSCPRIDYLSRW 493
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
LP L+NL LD+S L P + S +SL+ L M N F+ + L L
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 497 VWDFAQNNLSGEIPKFLAGF-KLLENVNLSYNDLGA 531
V D++ N++ + L F L +NL+ ND
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 135 IPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII 194
+P + N+ +DLS QL P F SLS ++ L NN L+S+
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 195 RLSLTYNNIARSIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSVVLNRM 251
L + N+I S L + +L+FL+L N + T F + V + RM
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 286
Query: 252 QGNIPLD 258
+ P D
Sbjct: 287 ECATPSD 293
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
LP L+NL LD+S L P + S +SL+ L M N F+ + L L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 497 VWDFAQNNLSGEIPKFLAGF-KLLENVNLSYNDLGA 531
V D++ N++ + L F L +NL+ ND
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 135 IPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII 194
+P + N+ +DLS QL P F SLS ++ L NN L+S+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 195 RLSLTYNNIARSIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSVVLNRM 251
L + N+I S L + +L+FL+L N + T F + V + RM
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581
Query: 252 QGNIPLD 258
+ P D
Sbjct: 582 ECATPSD 588
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLS 496
LP L+NL LD+S L P + S +SL+ L M N F+ + L L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 497 VWDFAQNNLSGEIPKFLAGF-KLLENVNLSYNDLGA 531
V D++ N++ + L F L +NL+ ND
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 135 IPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII 194
+P + N+ +DLS QL P F SLS ++ L NN L+S+
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545
Query: 195 RLSLTYNNIARSIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSVVLNRM 251
L + N+I S L + +L+FL+L N + T F + V + RM
Sbjct: 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 605
Query: 252 QGNIPLD 258
+ P D
Sbjct: 606 ECATPSD 612
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 313 FGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNL 371
S+P GI + +RL++ NN+++ P L NL+ L + N+ + IP V L
Sbjct: 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKL 80
Query: 372 KMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKN 406
L QL++++N L+ + KSL I N
Sbjct: 81 TQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSGNRFSGN 363
L+L+NN+I P LVNL++LY +NKL+ IP+ + D L L L ++ N
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 364 IPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI 399
+ NLK L + + N C+C+ ++
Sbjct: 97 PRGAFDNLKSLTHIYLYNNPWD-------CECRDIM 125
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 79/179 (44%), Gaps = 39/179 (21%)
Query: 211 LGYLENLSFLSLGGNMLSG---------------------TIPSSIFNR-SSITTFSVVL 248
+ YL N+ +L+LGGN L ++P+ +F++ +++ +V
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLD 308
N++Q +P L NL + + N +P+ + + T L L L
Sbjct: 119 NQLQS-LPDGVFDKLTNLTYLNLAHNQLQS------------LPKGVFDKLTNLTELDLS 165
Query: 309 NNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSGNRFSGNIP 365
N++ S+P G+ KL L+ L ++ N+L ++P + D L +L+ + + N + P
Sbjct: 166 YNQL-QSLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 86/211 (40%), Gaps = 48/211 (22%)
Query: 137 ATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRL 196
+ + +N+ + L+ NQL F L+ +K+L N L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL----------------- 121
Query: 197 SLTYNNIARSIPD-TLGYLENLSFLSLGGNMLSGTIPSSIFNR-SSITTFSVVLNRMQGN 254
+S+PD L NL++L+L N L ++P +F++ +++T + N++Q
Sbjct: 122 --------QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS- 171
Query: 255 IPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFG 314
+P L L+ + N +P+ + + T+L ++L +N +
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKS------------VPDGVFDRLTSLQYIWLHDNP-WD 218
Query: 315 SIPPGIGKLVNLRRLYVWNNKLSGTIPSAIG 345
PGI R L W NK SG + ++ G
Sbjct: 219 CTCPGI------RYLSEWINKHSGVVRNSAG 243
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 300 TTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSG 357
T L L L N++ S+P G+ KL NL+ L + N+L ++P + D L NL L ++
Sbjct: 85 TNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAH 142
Query: 358 NRFSGNIPLSV-GNLKMLIQLEVSENFLQ 385
N+ +P V L L +L++S N LQ
Sbjct: 143 NQLQS-LPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 92/193 (47%), Gaps = 28/193 (14%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPD-TLGYLENLSFLSLGGNMLSGTIPSSIFNR-S 239
S+P+ + ++ + L N +S+P+ L +L+ L LGGN L ++P+ +FN+ +
Sbjct: 21 SVPTGIPAQTTYLDLE---TNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLT 76
Query: 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFS 299
S+T ++ N++Q ++P L L+ + N +P+ + +
Sbjct: 77 SLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS------------LPDGVFDKL 123
Query: 300 TTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
T L L L N++ S+P G+ +L +L+ +++ +N T P +R L N
Sbjct: 124 TQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWIN 175
Query: 359 RFSGNIPLSVGNL 371
+ SG + S G++
Sbjct: 176 KHSGVVRNSAGSV 188
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
+++ ++LS NQL F L+++K+L N L L+ + L L Y N
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQN 134
Query: 203 IARSIPD-TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLD 258
+S+PD L +L ++ L N T P + I S V+ G++ D
Sbjct: 135 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPD 191
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222
F L K++ L N+L IP +L SS++ L + N I + L N++ + +
Sbjct: 98 FSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154
Query: 223 GGNML--SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP--NLQH---FGIVFNN 275
GGN L SG P + F+ + + ++ G IP D TL +L H I +
Sbjct: 155 GGNPLENSGFEPGA-FDGLKLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELED 212
Query: 276 FTEXXXXXXXXFGGLIPECISN----FSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYV 331
G I N F TL L LDNNK+ +P G+ L L+ +Y+
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYL 271
Query: 332 WNNKLS 337
N ++
Sbjct: 272 HTNNIT 277
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 41/97 (42%)
Query: 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222
FG L + L N LTG P++ S I L L N I L L L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 223 GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDF 259
N +S +P S + +S+T+ ++ N N L +
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 288 GGLIPECISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGD 346
G + E +N T+ + L+ N I IPPG LRR+ + NN++S P A
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 347 LQNLRMLGMSGNRFS 361
L++L L + GN+ +
Sbjct: 79 LRSLNSLVLYGNKIT 93
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 169 IKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS 228
I ++R N + P + + R+ L+ N I+ PD L +L+ L L GN ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 229 GTIPSSIF 236
+P S+F
Sbjct: 94 -ELPKSLF 100
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
T L ++ +NK +P GI + ++ LY+ N+ + +P + + ++L ++ +S NR
Sbjct: 9 TCLDTVVRCSNKGLKVLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR 65
Query: 360 FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS 409
S S N+ L+ L +S N L+ P + KSL ++ N++S
Sbjct: 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 138 TMSRCSNI--------ILMDLSVNQLLGN----IPPEFGSLSKIKDLRSFMNNLTGSIPS 185
T+ RCSN I D++ L GN +P E + + + N ++
Sbjct: 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQ 72
Query: 186 SLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFN 237
S N++ ++ L L+YN + P T L++L LSL GN +S +P FN
Sbjct: 73 SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFN 123
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 135 IPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII 194
+P +S ++ L+DLS N++ F +++++ L N L P + L S+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 195 RLSLTYNNIARSIPDTLGYLENLSFLSLGGNML 227
LSL N+I+ L LS L++G N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 148 MDLSVNQLLGNIPPEFGSL--SKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR 205
+ L+ NQLL F L + + L NNL S L S+ LSL YNNI R
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 206 SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSV-------VLNRMQGNIP 256
P + L NL +LSL ++ S+ + +I FS LN NIP
Sbjct: 287 LSPRSFYGLSNLRYLSLKRAFTKQSV--SLASHPNIDDFSFQWLKYLEYLNMDDNNIP 342
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIP--SAIGDLQ 348
E + + TL L++ N+I GI KLVNLR LY+ NNK++ G I +A+ L+
Sbjct: 87 ENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 144
Query: 349 NLRMLG 354
+L + G
Sbjct: 145 DLLLAG 150
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 288 GGLIPECISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGD 346
G + E +N T+ + L+ N I IPPG LRR+ + NN++S P A
Sbjct: 20 GKGLTEIPTNLPETITEIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78
Query: 347 LQNLRMLGMSGNRFS 361
L++L L + GN+ +
Sbjct: 79 LRSLNSLVLYGNKIT 93
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 169 IKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS 228
I ++R N + P + + R+ L+ N I+ PD L +L+ L L GN ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 229 GTIPSSIF 236
+P S+F
Sbjct: 94 -ELPKSLF 100
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 293 ECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIP--SAIGDLQ 348
E + + TL L++ N+I GI KLVNLR LY+ NNK++ G I +A+ L+
Sbjct: 86 ENLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143
Query: 349 NLRMLG 354
+L + G
Sbjct: 144 DLLLAG 149
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 10/208 (4%)
Query: 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS 361
L +L L NNKI P LV L RLY+ N+L LQ LR+ +
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 137
Query: 362 GNIPLSVGNLKMLIQLEVSENFLQ--GTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXX 419
++ L +I +E+ N L+ G + K L I + N++ TIP
Sbjct: 138 KSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP---QGL 190
Query: 420 XXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
N T + L NL L +S N +S SL + L +L + N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 480 KFYGPIPSSLRSLRGLSVWDFAQNNLSG 507
K +P L + + V NN+S
Sbjct: 251 KLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 85/227 (37%), Gaps = 29/227 (12%)
Query: 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG 362
A L L NNKI L NL L + NNK+S P A L L L +S N+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 363 NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXX 422
+P + K L +L V EN + S +I + N L +
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------- 160
Query: 423 XXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY 482
F G +K L + I+ ++ I G SL +L + GNK
Sbjct: 161 ----GIENGAFQG--------MKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKIT 205
Query: 483 GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529
+SL+ L L+ + N++S LA L ++L+ N L
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 79/208 (37%), Gaps = 10/208 (4%)
Query: 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS 361
L +L L NNKI P LV L RLY+ N+L LQ LR+ +
Sbjct: 78 LHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR 137
Query: 362 GNIPLSVGNLKMLIQLEVSENFLQ--GTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXX 419
++ L +I +E+ N L+ G + K L I + N++ TIP
Sbjct: 138 KSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP---QGL 190
Query: 420 XXXXXXXXXXRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479
N T + L NL L +S N +S SL + L +L + N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250
Query: 480 KFYGPIPSSLRSLRGLSVWDFAQNNLSG 507
K +P L + + V NN+S
Sbjct: 251 KLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG 362
A L L NNKI L NL L + NNK+S P A L L L +S N+
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113
Query: 363 NIPLSVGNLKMLIQLEVSEN 382
+P + K L +L V EN
Sbjct: 114 ELPEKMP--KTLQELRVHEN 131
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 302 LASLFLDNNKIFGSIPPGIGK-LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
L +L LD + + PG+ + L L+ LY+ +N L DL NL L + GNR
Sbjct: 107 LHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
Query: 361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
S + L L +L + +N + P + L+ + NNLS
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS 361
L LFL N+I L +L RL + N+++ P A DL L L + N S
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 362 GNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKS 397
++ L+ L L +++N +C C++
Sbjct: 215 ALPTEALAPLRALQYLRLNDN-------PWVCDCRA 243
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 14/175 (8%)
Query: 185 SSLGNLSSIIRLSLTYNNIARSI-PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243
++ L+ + +L L+ N RS+ P T L L L L L P +++
Sbjct: 74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLA 303
+ N +Q +P D L NL H + N + +PE +L
Sbjct: 134 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISS------------VPERAFRGLHSLD 180
Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
L L N++ P L L LY++ N LS A+ L+ L+ L ++ N
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 302 LASLFLDNNKIFGSIPPGIGK-LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
L +L LD + + PG+ + L L+ LY+ +N L DL NL L + GNR
Sbjct: 106 LHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
Query: 361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410
S + L L +L + +N + P + L+ + NNLS
Sbjct: 165 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS 361
L LFL N+I L +L RL + N+++ P A DL L L + N S
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 362 GNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKS 397
++ L+ L L +++N +C C++
Sbjct: 214 ALPTEALAPLRALQYLRLNDN-------PWVCDCRA 242
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 68/175 (38%), Gaps = 14/175 (8%)
Query: 185 SSLGNLSSIIRLSLTYNNIARSI-PDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243
++ L+ + +L L+ N RS+ P T L L L L L P +++
Sbjct: 73 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 132
Query: 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLA 303
+ N +Q +P D L NL H + N + +PE +L
Sbjct: 133 LYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISS------------VPERAFRGLHSLD 179
Query: 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
L L N++ P L L LY++ N LS A+ L+ L+ L ++ N
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 309 NNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSV 368
N F S P +L L + N +S P A +L NLR LG+ NR IPL V
Sbjct: 48 NQDEFASFP-------HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-IPLGV 99
Query: 369 -GNLKMLIQLEVSEN 382
L L +L++SEN
Sbjct: 100 FTGLSNLTKLDISEN 114
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 26/241 (10%)
Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
SN+ +D+S N+++ + F L +K L N+L + L+S+ +L+L N
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163
Query: 203 IARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSV----VLNRMQGNIPL 257
+ SIP + L +L L L L ++ S + + L+ M N
Sbjct: 164 LT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL- 221
Query: 258 DFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFLDNNKIFGSIP 317
+G NL I N T +P L L L N I
Sbjct: 222 -YGL---NLTSLSITHCNLTA------------VPYLAVRHLVYLRFLNLSYNPISTIEG 265
Query: 318 PGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS---GNIPLSVGNLKML 374
+ +L+ L+ + + +L+ P A L LR+L +SGN+ + ++ SVGNL+ L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
Query: 375 I 375
I
Sbjct: 326 I 326
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 6/215 (2%)
Query: 315 SIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374
++P GI + +R+++ N++S ++ +NL +L + N +G + L +L
Sbjct: 24 AVPTGIP--ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 375 IQLEVSENF-LQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQXXXXXXXXXXXXXXRNHF 433
QL++S+N L+ P++ L ++ + L + P N+
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNL 140
Query: 434 TGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSL- 492
+L NL L + GN + + SL++LL+ N P + R L
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 493 RGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYN 527
R ++++ FA NNLS + L + L+ + L+ N
Sbjct: 201 RLMTLYLFA-NNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 302 LASLFLDNNKIFGSIPPGIGK-LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRF 360
L +L LD + + PG+ + L L+ LY+ +N L + DL NL L + GNR
Sbjct: 106 LHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS 409
+ L L +L + +N + P + L+ + NNLS
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 182 SIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV----- 78
Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNF 298
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 --LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG---------- 124
Query: 299 STTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSG 357
L L+L N++ ++PPG+ L +L + NN+L+ + L+NL L +
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 358 N 358
N
Sbjct: 182 N 182
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A N L+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 150 LEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 205
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 206 PWLC-NCEILYFRRWLQDNAENVYVWK 231
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 182 SIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV----- 78
Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNF 298
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 --LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG---------- 124
Query: 299 STTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSG 357
L L+L N++ ++PPG+ L +L + NN+L+ + L+NL L +
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 358 N 358
N
Sbjct: 182 N 182
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 182 SIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV----- 78
Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNF 298
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 --LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG---------- 124
Query: 299 STTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSG 357
L L+L N++ ++PPG+ L +L + NN+L+ + L+NL L +
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 358 N 358
N
Sbjct: 182 N 182
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 26/181 (14%)
Query: 182 SIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV----- 78
Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNF 298
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 --LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG---------- 124
Query: 299 STTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSG 357
L L+L N++ ++PPG+ L +L + NN+L+ + L+NL L +
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQE 181
Query: 358 N 358
N
Sbjct: 182 N 182
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN 202
+ + ++DL NQL F L +K+L N LT +P + L+ + L+L N
Sbjct: 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 203 IARSIPD-TLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGN 254
+ +SIP L +L+ L GN ++ R+ + + + R G
Sbjct: 147 L-KSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGK 198
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG-----------------------TIP 341
L+L +N+I P L+NL+ LY+ +N+L +P
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 342 SAIGD-LQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP 389
SA+ D L +L+ L M N+ + +P + L L L + +N L+ +IP
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIP 151
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 26/181 (14%)
Query: 182 SIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV----- 78
Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNF 298
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 --LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG---------- 124
Query: 299 STTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSG 357
L L+L N++ ++PPG + L +L + NN L+ + L+NL L +
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQE 181
Query: 358 N 358
N
Sbjct: 182 N 182
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A N+L+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 150 LEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 205
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 206 PWLC-NCEILYFRRWLQDNAENVYVWK 231
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 178 NLTGSIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSS 234
NLT ++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 22 NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV- 79
Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPEC 294
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 80 ------LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG------ 125
Query: 295 ISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRML 353
L L+L N++ ++PPG + L +L + NN L+ + L+NL L
Sbjct: 126 ------ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
Query: 354 GMSGN 358
+ N
Sbjct: 179 LLQEN 183
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 92 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A NNL+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 151 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 206
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 207 PWLC-NCEILYFRRWLQDNAENVYVWK 232
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 178 NLTGSIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSS 234
NLT ++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 21 NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV- 78
Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPEC 294
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 ------LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG------ 124
Query: 295 ISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRML 353
L L+L N++ ++PPG + L +L + NN L+ + L+NL L
Sbjct: 125 ------ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 GMSGN 358
+ N
Sbjct: 178 LLQEN 182
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A NNL+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 205
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 206 PWLC-NCEILYFRRWLQDNAENVYVWK 231
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 178 NLTGSIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSS 234
NLT ++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 21 NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV- 78
Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPEC 294
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 ------LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG------ 124
Query: 295 ISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRML 353
L L+L N++ ++PPG + L +L + NN L+ + L+NL L
Sbjct: 125 ------ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 GMSGN 358
+ N
Sbjct: 178 LLQEN 182
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A NNL+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 205
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 206 PWLC-NCEILYFRRWLQDNAENVYVWK 231
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222
L IK L +T P L LS++ L L N I P L L NL +LS+
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 164
Query: 223 GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE 278
G N ++ P + N S +TT N++ PL +LPNL + N ++
Sbjct: 165 GNNQVNDLTP--LANLSKLTTLRADDNKISDISPL---ASLPNLIEVHLKDNQISD 215
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 24/160 (15%)
Query: 189 NLSSIIRLSLTYNNI-ARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV 247
N+SS+ L ++ N++ + + T + E++ L+L NML+G++ + + +
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLH 458
Query: 248 LNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFSTTLASLFL 307
NR+ IP D L LQ + N +P+ + + T+L ++L
Sbjct: 459 NNRIMS-IPKDVTH-LQALQELNVASNQLKS------------VPDGVFDRLTSLQYIWL 504
Query: 308 DNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDL 347
+N + PGI R L W NK SG + ++ G +
Sbjct: 505 HDNP-WDCTCPGI------RYLSEWINKHSGVVRNSAGSV 537
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 27/185 (14%)
Query: 178 NLTGSIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSS 234
NLT ++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 21 NLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV- 78
Query: 235 IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPEC 294
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 ------LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG------ 124
Query: 295 ISNFSTTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRML 353
L L+L N++ ++PPG + L +L + NN L+ + L+NL L
Sbjct: 125 ------ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 354 GMSGN 358
+ N
Sbjct: 178 LLQEN 182
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A NNL+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 205
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 206 PWLC-NCEILYFRRWLQDNAENVYVWK 231
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 26/181 (14%)
Query: 182 SIPSSLGNLSSIIRLS--LTYN-NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR 238
++P L ++I+ LS L Y ++A +P T NL L + GT+P
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV----- 78
Query: 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNF 298
+ T + N++Q ++PL G TLP L + FN T G
Sbjct: 79 --LGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLG---------- 124
Query: 299 STTLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSG 357
L L+L N++ ++PPG + L +L + NN L+ + L+NL L +
Sbjct: 125 --ELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 358 N 358
N
Sbjct: 182 N 182
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 436 SLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRG 494
SLP+ L L VLD+S N L+ +P+ +L L++L ++GN+ P L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 495 LSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYVPTEGVIKNS--SATSVMGN 551
L A NNL+ E+P L G + L+ + L N L Y +G + + GN
Sbjct: 150 LEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL---YTIPKGFFGSHLLPFAFLHGN 205
Query: 552 SKLCGGIPKLQFPRCTKNNSSNQKISR 578
LC L F R ++N+ N + +
Sbjct: 206 PWLC-NCEILYFRRWLQDNAENVYVWK 231
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 444 LKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503
L L LD+SGN LS P S L+KL M ++ ++ +L+ L + A N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 504 NLSGEIPKFLAGFKLLENVNLSYN 527
NL+ LE ++L +N
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SS 240
S+PS G + +L L +A T L L++L+L N L T+ + +F+ +
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFST 300
+ T + N++ ++PL L L + N +P + + T
Sbjct: 85 LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS------------LPSGVFDRLT 131
Query: 301 TLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
L L L+ N++ SIP G KL NL+ L + N+L A L L+ + + GN+
Sbjct: 132 KLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Query: 360 FS 361
F
Sbjct: 191 FD 192
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 300 TTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSG 357
T L +L L NN++ S+P G+ L L +LY+ N+L ++PS + D L L+ L ++
Sbjct: 83 TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 358 NRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
N+ + L L L +S N LQ
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Query: 182 SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNR-SS 240
S+PS G + +L L +A T L L++L+L N L T+ + +F+ +
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTEXXXXXXXXFGGLIPECISNFST 300
+ T + N++ ++PL L L + N +P + + T
Sbjct: 85 LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKS------------LPSGVFDRLT 131
Query: 301 TLASLFLDNNKIFGSIPPG-IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR 359
L L L+ N++ SIP G KL NL+ L + N+L A L L+ + + GN+
Sbjct: 132 KLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Query: 360 FS 361
F
Sbjct: 191 FD 192
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 300 TTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSG 357
T L +L L NN++ S+P G+ L L +LY+ N+L ++PS + D L L+ L ++
Sbjct: 83 TELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 358 NRFSGNIPLSVGNLKMLIQLEVSENFLQ 385
N+ + L L L +S N LQ
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 299 STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358
S L+ LFLDNN++ + + L NL L + NNKL + +G L L +L + GN
Sbjct: 105 SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGN 160
Query: 359 RFS 361
+
Sbjct: 161 EIT 163
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 178 NLTGSIPSSL-GNLSSIIRLSLTYNNIARSIPDT--LGYLENLSFLSLGGNMLSGTIPSS 234
N GSI S + NL + L L+YN+I R++ D LG L NL L+L N L ++P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLG-LPNLKELALDTNQLK-SVPDG 389
Query: 235 IFNR 238
IF+R
Sbjct: 390 IFDR 393
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 444 LKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503
L L L++SGN L P S TSL KL + + ++ L+ L + + N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 504 NLSGEIPKFLAGFKLLENVNLSYN 527
NL LE V+L++N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 291 IPECISNFSTTLASLFLDNNKIFGSIPPGI-GKLVNLRRLYVWNNKLSGTIPSAIGD-LQ 348
+P + + T L L L N+I S+P G+ KL L LY+ NKL ++P+ + D L
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLT 100
Query: 349 NLRMLGMSGNRF 360
L+ L + N+
Sbjct: 101 QLKELALDTNQL 112
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSGN 358
TT L+L +N+I P +L L RL + NN+L+ +P+ + D L L L ++ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88
Query: 359 RFSGNIPLSVGNLKMLIQLEVSEN 382
+ + NLK L + + N
Sbjct: 89 QLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 444 LKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503
L L L++SGN L P S TSL KL + + ++ L+ L + + N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 504 NLSGEIPKFLAGFKLLENVNLSYN 527
NL LE V+L++N
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGD-LQNLRMLGMSGN 358
TT L+L +N+I P +L L RL + NN+L+ +P+ + D L L L ++ N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 96
Query: 359 RFSGNIPLSVGNLKMLIQLEVSEN 382
+ + NLK L + + N
Sbjct: 97 QLKSIPRGAFDNLKSLTHIWLLNN 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,972,917
Number of Sequences: 62578
Number of extensions: 635098
Number of successful extensions: 1541
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 286
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)