Query 035922
Match_columns 581
No_of_seqs 520 out of 4482
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.3E-65 2.9E-70 591.0 42.3 545 1-568 1-621 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-54 4.1E-59 498.6 34.4 475 75-559 49-588 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 5.7E-43 1.2E-47 331.5 -13.4 439 86-554 59-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 1.3E-38 2.7E-43 314.9 7.2 205 319-525 240-447 (873)
5 KOG4194 Membrane glycoprotein 100.0 3.1E-38 6.8E-43 312.1 6.4 365 98-503 81-449 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 1E-40 2.3E-45 316.2 -14.8 437 84-552 80-562 (565)
7 KOG0618 Serine/threonine phosp 100.0 9E-38 2E-42 324.5 -4.9 432 96-554 46-489 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 2.3E-36 4.9E-41 300.8 -3.6 368 92-531 4-376 (1255)
9 KOG0444 Cytoskeletal regulator 100.0 1.2E-35 2.7E-40 295.6 -4.5 364 144-555 8-376 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1E-34 2.2E-39 301.9 -6.8 450 86-558 12-469 (1081)
11 PLN03210 Resistant to P. syrin 99.9 8.1E-25 1.8E-29 253.2 27.8 340 112-480 551-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 5.5E-25 1.2E-29 254.5 25.6 338 90-456 553-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.8E-26 4E-31 219.4 -3.6 418 73-527 51-498 (498)
14 KOG4237 Extracellular matrix p 99.9 4.2E-26 9.2E-31 216.9 -2.5 388 84-503 79-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.9 1.4E-21 3E-26 210.7 17.9 183 301-513 283-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.3E-21 2.7E-26 211.1 17.5 142 301-464 323-464 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.7E-20 8E-25 201.1 10.7 38 40-79 58-99 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.8E-20 8.3E-25 200.9 10.7 54 169-228 180-233 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2.8E-20 6.1E-25 187.5 2.6 252 301-553 24-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 6.5E-20 1.4E-24 184.8 1.6 209 320-529 77-319 (319)
21 KOG0617 Ras suppressor protein 99.7 2E-19 4.2E-24 152.7 -4.7 186 321-513 30-219 (264)
22 KOG0617 Ras suppressor protein 99.7 5.1E-19 1.1E-23 150.2 -4.1 163 346-515 31-194 (264)
23 PLN03150 hypothetical protein; 99.5 1.2E-13 2.7E-18 149.8 13.0 154 41-203 368-527 (623)
24 PLN03150 hypothetical protein; 99.4 1E-12 2.2E-17 142.8 9.6 118 446-567 419-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 3.1E-14 6.7E-19 142.6 -4.3 173 324-506 75-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 4.2E-14 9.2E-19 141.6 -4.2 192 346-549 73-268 (722)
27 COG4886 Leucine-rich repeat (L 99.3 3.2E-12 6.9E-17 132.7 7.3 199 304-512 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.3 4.4E-12 9.6E-17 131.6 7.6 179 301-488 117-296 (394)
29 KOG1259 Nischarin, modulator o 99.2 5.7E-12 1.2E-16 117.0 2.5 128 397-531 285-413 (490)
30 KOG1909 Ran GTPase-activating 99.2 2.7E-12 5.8E-17 121.9 -0.3 228 301-529 31-310 (382)
31 KOG4658 Apoptotic ATPase [Sign 99.1 1.9E-11 4.2E-16 135.5 4.1 132 92-226 520-653 (889)
32 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.6E-16 113.2 1.5 130 416-552 280-410 (490)
33 KOG1909 Ran GTPase-activating 99.1 3.4E-11 7.3E-16 114.5 0.6 97 114-228 25-133 (382)
34 KOG3207 Beta-tubulin folding c 99.1 4.7E-11 1E-15 116.6 1.6 204 301-506 122-339 (505)
35 KOG3207 Beta-tubulin folding c 99.0 3E-11 6.6E-16 117.9 0.1 209 321-532 118-341 (505)
36 PF14580 LRR_9: Leucine-rich r 99.0 1.8E-10 3.9E-15 102.9 4.5 103 424-531 22-127 (175)
37 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.9E-15 101.7 5.5 125 394-524 17-147 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.9 5.5E-10 1.2E-14 124.2 4.4 129 93-222 543-675 (889)
39 KOG0531 Protein phosphatase 1, 98.9 1.6E-10 3.5E-15 120.2 -0.4 243 263-532 71-320 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 79.5 3.2 61 469-529 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 4.8E-10 1E-14 116.7 -1.9 239 301-554 73-318 (414)
42 PF13855 LRR_8: Leucine rich r 98.8 4.3E-09 9.2E-14 77.2 3.2 61 445-505 1-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.8 5.1E-10 1.1E-14 115.7 -3.4 197 348-556 84-294 (1096)
44 KOG1859 Leucine-rich repeat pr 98.5 4E-09 8.7E-14 109.2 -4.6 180 341-531 102-293 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 9.6E-09 2.1E-13 95.8 -5.7 158 192-359 186-349 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 9.1E-09 2E-13 96.0 -6.5 58 301-358 186-244 (419)
47 KOG4579 Leucine-rich repeat (L 98.3 4.5E-08 9.8E-13 81.0 -3.6 59 446-506 78-136 (177)
48 KOG2982 Uncharacterized conser 98.3 1.2E-07 2.5E-12 88.7 -1.4 85 141-225 69-156 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 7E-07 1.5E-11 82.5 0.6 35 94-128 29-67 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 1.9E-07 4.2E-12 77.3 -2.7 83 348-434 53-136 (177)
51 PRK15386 type III secretion pr 98.0 2.1E-05 4.5E-10 79.2 9.3 57 320-382 48-104 (426)
52 KOG2982 Uncharacterized conser 98.0 1.7E-06 3.6E-11 81.1 0.7 84 323-406 70-156 (418)
53 PF08263 LRRNT_2: Leucine rich 98.0 8.6E-06 1.9E-10 54.5 3.9 37 44-80 2-40 (43)
54 COG5238 RNA1 Ran GTPase-activa 98.0 2.1E-06 4.5E-11 79.5 0.9 89 114-203 25-132 (388)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.6E-10 54.0 3.5 36 120-156 2-37 (44)
56 PRK15386 type III secretion pr 97.9 6.7E-05 1.4E-09 75.6 9.3 52 301-358 53-104 (426)
57 PF12799 LRR_4: Leucine Rich r 97.8 2.3E-05 5E-10 52.6 3.7 36 494-530 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.5 0.00015 3.3E-09 64.6 5.5 101 98-203 22-125 (233)
59 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.7E-09 64.3 5.2 122 424-550 22-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.5E-10 83.8 1.5 134 95-230 122-265 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 2.2E-05 4.7E-10 85.8 -0.6 106 119-226 122-231 (699)
62 KOG2739 Leucine-rich acidic nu 97.1 0.0002 4.3E-09 66.6 1.9 92 87-180 35-129 (260)
63 PF13306 LRR_5: Leucine rich r 97.1 0.0018 4E-08 55.2 7.5 105 90-199 7-111 (129)
64 KOG4341 F-box protein containi 97.0 3.6E-05 7.8E-10 75.8 -4.2 236 294-530 184-439 (483)
65 PF13306 LRR_5: Leucine rich r 97.0 0.0023 5.1E-08 54.5 6.8 106 114-224 7-112 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00042 9.2E-09 64.5 2.1 91 111-205 35-130 (260)
67 KOG4341 F-box protein containi 96.1 0.00022 4.8E-09 70.4 -5.7 34 96-129 139-174 (483)
68 KOG2123 Uncharacterized conser 96.0 0.00021 4.5E-09 66.8 -5.9 100 94-197 18-123 (388)
69 KOG2123 Uncharacterized conser 95.8 0.00031 6.8E-09 65.6 -5.8 21 211-231 84-104 (388)
70 KOG1947 Leucine rich repeat pr 95.4 0.002 4.4E-08 68.7 -2.2 63 346-408 241-307 (482)
71 KOG4308 LRR-containing protein 95.4 0.0001 2.2E-09 77.1 -11.9 36 302-337 89-128 (478)
72 PF00560 LRR_1: Leucine Rich R 95.3 0.0091 2E-07 33.2 1.1 18 495-513 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0088 1.9E-07 33.3 1.0 12 145-156 2-13 (22)
74 KOG1947 Leucine rich repeat pr 94.6 0.0047 1E-07 65.8 -2.2 131 322-453 186-329 (482)
75 KOG4308 LRR-containing protein 94.1 0.00032 7E-09 73.4 -12.1 181 300-481 115-330 (478)
76 KOG0473 Leucine-rich repeat pr 92.6 0.0021 4.5E-08 58.7 -7.7 86 115-203 38-123 (326)
77 KOG0473 Leucine-rich repeat pr 90.7 0.0063 1.4E-07 55.7 -6.8 79 424-505 45-123 (326)
78 PF13504 LRR_7: Leucine rich r 90.3 0.19 4.1E-06 25.9 1.4 10 145-154 3-12 (17)
79 smart00370 LRR Leucine-rich re 87.3 0.52 1.1E-05 27.2 2.0 13 494-506 3-15 (26)
80 smart00369 LRR_TYP Leucine-ric 87.3 0.52 1.1E-05 27.2 2.0 13 494-506 3-15 (26)
81 PF13516 LRR_6: Leucine Rich r 87.3 0.25 5.5E-06 27.9 0.6 16 493-508 2-17 (24)
82 KOG3864 Uncharacterized conser 86.1 0.12 2.5E-06 46.7 -1.8 79 448-526 104-185 (221)
83 smart00369 LRR_TYP Leucine-ric 85.0 0.83 1.8E-05 26.3 2.1 13 120-132 3-15 (26)
84 smart00370 LRR Leucine-rich re 85.0 0.83 1.8E-05 26.3 2.1 13 120-132 3-15 (26)
85 KOG3864 Uncharacterized conser 83.0 0.14 3.1E-06 46.2 -2.6 35 301-335 102-136 (221)
86 KOG3763 mRNA export factor TAP 71.7 2.2 4.8E-05 44.6 1.7 64 467-532 216-285 (585)
87 smart00364 LRR_BAC Leucine-ric 70.8 3.1 6.7E-05 24.1 1.4 18 517-536 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 64.6 6.2 0.00014 22.9 1.9 14 119-132 2-15 (26)
89 smart00368 LRR_RI Leucine rich 63.0 6.3 0.00014 23.2 1.8 14 517-530 2-15 (28)
90 KOG4242 Predicted myosin-I-bin 59.9 56 0.0012 34.0 8.9 13 493-505 440-452 (553)
91 KOG3763 mRNA export factor TAP 37.3 19 0.00042 38.0 1.7 79 443-523 216-307 (585)
92 smart00367 LRR_CC Leucine-rich 31.5 32 0.0007 19.6 1.3 11 493-503 2-12 (26)
93 TIGR00864 PCC polycystin catio 28.9 35 0.00076 43.4 2.2 32 475-506 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-65 Score=591.02 Aligned_cols=545 Identities=37% Similarity=0.594 Sum_probs=392.0
Q ss_pred CCcccccchhHHHHHHHHHHHHHHHhccccccccccccccCCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCC
Q 035922 1 MGTTTRVSLPYFVVHAALVLVFCFSFQFVPKSHGARAARVAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHES 80 (581)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~w~~~ 80 (581)
||.-+++.-||++++..++. + .+ ....++|+.||++||+++. +|.+.+.+|+..++||.|.|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~--~~-------------~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv 63 (968)
T PLN00113 1 MAKKGPQHCPYLIFMLFFLF-L--NF-------------SMLHAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGI 63 (968)
T ss_pred CCCCCCCCCChHHHHHHHHH-H--Hc-------------cCCCHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcce
Confidence 77888888888653322111 1 11 1113578999999999994 787888999888899999872
Q ss_pred ---------------CCcccccCccccCCCCCcEEECCCCCCCCCCchhcc-CCCCCCEEEccCCCCCCCCcccCcCCCC
Q 035922 81 ---------------LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIG-RLRRLRGLTLNNNSIGGEIPATMSRCSN 144 (581)
Q Consensus 81 ---------------~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 144 (581)
..+.|.+++.+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|.+++.+|. +.+++
T Consensus 64 ~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 64 TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred ecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 234567788889999999999999999988887654 888888888888888776664 34666
Q ss_pred CCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCC
Q 035922 145 IILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGG 224 (581)
Q Consensus 145 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 224 (581)
|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 77777777776666666666677777777777766666666666666777777766666666666666666666666666
Q ss_pred ccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcc-------------eeEeccCCcCcccC
Q 035922 225 NMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------ELLLLNDNNFGGLI 291 (581)
Q Consensus 225 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------~~l~l~~n~l~~~~ 291 (581)
|++++.+|..+.++++|++|++++|.+.+.+|..+.. +++|+.|++++|.+. +.+++++|.+.+.+
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 6666666666666666666666666666666655544 666666666665543 34555556555555
Q ss_pred chhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCc------------
Q 035922 292 PECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR------------ 359 (581)
Q Consensus 292 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~------------ 359 (581)
|..+..+. +|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.
T Consensus 301 p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~ 379 (968)
T PLN00113 301 PELVIQLQ-NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379 (968)
T ss_pred ChhHcCCC-CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc
Confidence 55555543 55555555555555555555555555555555555555555555555555555555554
Q ss_pred ------------ccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhccc-------
Q 035922 360 ------------FSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLS------- 420 (581)
Q Consensus 360 ------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~------- 420 (581)
+.+.+|..+..+++|+.|++++|.+++.+|..+..++.|+.|++++|.+.+.+|..+..++
T Consensus 380 ~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 459 (968)
T PLN00113 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459 (968)
T ss_pred CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEEC
Confidence 4445555555666777777777777666666666666666666666666555554333333
Q ss_pred ----------------CCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCccc
Q 035922 421 ----------------SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP 484 (581)
Q Consensus 421 ----------------~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 484 (581)
.+ +.|++++|++++.+|..+.++++|++|++++|++.+.+|..+..+++|+.|+|++|.+++.
T Consensus 460 ~~n~~~~~~p~~~~~~~L-~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 538 (968)
T PLN00113 460 ARNKFFGGLPDSFGSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538 (968)
T ss_pred cCceeeeecCcccccccc-eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc
Confidence 34 5566666666677777778888999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCCCCCCC
Q 035922 485 IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPKLQFP 564 (581)
Q Consensus 485 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~~~~~~ 564 (581)
+|..+..+++|+.||+++|++++.+|..+.++++|+++++++|++.+. +|..+.+.++...++.|||++||..+....+
T Consensus 539 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~-~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~ 617 (968)
T PLN00113 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS-LPSTGAFLAINASAVAGNIDLCGGDTTSGLP 617 (968)
T ss_pred CChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee-CCCcchhcccChhhhcCCccccCCccccCCC
Confidence 999999999999999999999999999999999999999999999998 9999999999999999999999976655567
Q ss_pred CCCC
Q 035922 565 RCTK 568 (581)
Q Consensus 565 ~c~~ 568 (581)
+|..
T Consensus 618 ~c~~ 621 (968)
T PLN00113 618 PCKR 621 (968)
T ss_pred CCcc
Confidence 8864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-54 Score=498.56 Aligned_cols=475 Identities=33% Similarity=0.557 Sum_probs=406.8
Q ss_pred ccccC---CCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCc-CCCCCCEEEc
Q 035922 75 CKWHE---SLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMS-RCSNIILMDL 150 (581)
Q Consensus 75 c~w~~---~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L 150 (581)
-.|.. .+.+.|.... +..+++.|+|++|.+++.+|..+..+++|++|+|++|.+.+.+|..+. .+++|++|++
T Consensus 49 ~~w~~~~~~c~w~gv~c~---~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~L 125 (968)
T PLN00113 49 SNWNSSADVCLWQGITCN---NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125 (968)
T ss_pred CCCCCCCCCCcCcceecC---CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEEC
Confidence 45753 3445555443 245899999999999999999999999999999999999988888765 9999999999
Q ss_pred cCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCC
Q 035922 151 SVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGT 230 (581)
Q Consensus 151 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 230 (581)
++|.+++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus 126 s~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 203 (968)
T PLN00113 126 SNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203 (968)
T ss_pred cCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc
Confidence 99999988885 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcc-------------eeEeccCCcCcccCchhhhh
Q 035922 231 IPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT-------------ELLLLNDNNFGGLIPECISN 297 (581)
Q Consensus 231 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------~~l~l~~n~l~~~~p~~~~~ 297 (581)
+|..+.++++|++|++++|.+.+.+|..+.. +++|++|++++|.+. +.+++++|.+.+.+|..+.+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred CChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 9999999999999999999999999998876 999999999999765 67999999999999999998
Q ss_pred cccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922 298 FSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377 (581)
Q Consensus 298 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 377 (581)
+. +|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 283 l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 283 LQ-KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred cc-CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 86 99999999999999999999999999999999999999999999999999999999999999899888888888888
Q ss_pred eecCcccCCCCccccc------------------------CCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcc
Q 035922 378 EVSENFLQGTIPSSLC------------------------QCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF 433 (581)
Q Consensus 378 ~L~~n~l~~~~p~~l~------------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l 433 (581)
++++|.+.+.+|.++. .+++|+.|++++|++++.+|..+..++.+ +.|++++|.+
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L-~~L~Ls~N~l 440 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV-YFLDISNNNL 440 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC-CEEECcCCcc
Confidence 8888887766665544 44555666666666666666666666666 6666666666
Q ss_pred cccCCccccCCC-----------------------CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCccccc
Q 035922 434 TGSLPIEVGNLK-----------------------NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLR 490 (581)
Q Consensus 434 ~~~~p~~l~~l~-----------------------~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 490 (581)
++.+|..+..++ +|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|+.+.
T Consensus 441 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 520 (968)
T PLN00113 441 QGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520 (968)
T ss_pred cCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHc
Confidence 665554443333 345555666666667777778888899999999999989999999
Q ss_pred CCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccCCC
Q 035922 491 SLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGGIP 559 (581)
Q Consensus 491 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~~~ 559 (581)
.+++|+.|++++|.+++.+|..+..+++|++|++++|++++. +|. ...+.+|+.+++++|+. .|.+|
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~l~ls~N~l-~~~~p 588 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE-IPKNLGNVESLVQVNISHNHL-HGSLP 588 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccccc-CChhHhcCcccCEEeccCCcc-eeeCC
Confidence 999999999999999999999999999999999999999998 886 46678899999999984 44444
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.7e-43 Score=331.54 Aligned_cols=439 Identities=27% Similarity=0.440 Sum_probs=325.8
Q ss_pred ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922 86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS 165 (581)
Q Consensus 86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (581)
.+.+.+.++..+.+|++++|.+. ..|.+++.+..++.++.++|+++ .+|+.++.+.+|+.+++++|.+. .+|+.++.
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~ 135 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGR 135 (565)
T ss_pred hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHH
Confidence 34456667777777777777776 56667777777777777777777 77777777777777777777776 55667777
Q ss_pred CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEE
Q 035922 166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFS 245 (581)
Q Consensus 166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 245 (581)
+..|..++..+|+++ ..|+.+.++.+|..+++.+|++....|+.+. ++.|++|++..|.++ .+|+.++.+.+|..++
T Consensus 136 ~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~Ly 212 (565)
T KOG0472|consen 136 LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLY 212 (565)
T ss_pred Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHH
Confidence 777777777777777 6677777777777777777777655444444 777777777777766 7777777777777777
Q ss_pred cccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCC
Q 035922 246 VVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN 325 (581)
Q Consensus 246 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 325 (581)
+.+|++. .+| +|.. +..|.++.+..|.+. .+|....+.-+++..||+.+|+++ .+|..+..+++
T Consensus 213 L~~Nki~-~lP-ef~g-cs~L~Elh~g~N~i~------------~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 213 LRRNKIR-FLP-EFPG-CSLLKELHVGENQIE------------MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhhcccc-cCC-CCCc-cHHHHHHHhcccHHH------------hhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 7777765 333 3322 555555555544432 456666543348888888888887 67777888888
Q ss_pred CCEEEeecCcCcccccccccCCCCCCeEeccCCccccc--------------------------------------CCcc
Q 035922 326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN--------------------------------------IPLS 367 (581)
Q Consensus 326 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------------------------------------~~~~ 367 (581)
|++||+++|.++ .+|..++++ +|+.|.+.+|.+... .+..
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 888888888888 567778888 888888888876410 0001
Q ss_pred C---CCCCCCcEEeecCcccCCCCcccccCCCC---CcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccc
Q 035922 368 V---GNLKMLIQLEVSENFLQGTIPSSLCQCKS---LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV 441 (581)
Q Consensus 368 ~---~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l 441 (581)
| ....+.+.|++++-+++ .+|........ ...++++.|++. .+|..+..+..+.+.+++++|.++ -+|..+
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l 431 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLEL 431 (565)
T ss_pred ccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHH
Confidence 1 12345666777777766 44544433333 677888888887 788888777777667778888777 677788
Q ss_pred cCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCE
Q 035922 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLEN 521 (581)
Q Consensus 442 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 521 (581)
..+++|..|+|++|.+. .+|..++.+-.|+.|+++.|+|. .+|+.+..+..++.+-.++|++....|+.+.++..|.+
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 89999999999999888 88999999999999999999997 88998888888999888889998777777999999999
Q ss_pred EECcCCCCCCCCCCCccccCCcCcccccCCCCC
Q 035922 522 VNLSYNDLGARYVPTEGVIKNSSATSVMGNSKL 554 (581)
Q Consensus 522 L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~l 554 (581)
||+.+|.+... .|..+.+.+++.+.+.|||+-
T Consensus 510 LDL~nNdlq~I-Pp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQQI-PPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchhhC-ChhhccccceeEEEecCCccC
Confidence 99999999885 666799999999999999965
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-38 Score=314.86 Aligned_cols=205 Identities=23% Similarity=0.216 Sum_probs=123.1
Q ss_pred hhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCC
Q 035922 319 GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSL 398 (581)
Q Consensus 319 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 398 (581)
.|.++++|+.|.|..|.+.......|..+.++++|+|+.|+++..-..++.++++|+.|++++|.+...-++.+..+++|
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL 319 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKL 319 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccc
Confidence 35556666666666666665555556666666666666666665555556666666666666666666556666666666
Q ss_pred cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCc---cccCCCCCcEEE
Q 035922 399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI---SLGSCTSLEKLL 475 (581)
Q Consensus 399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~ 475 (581)
++|+|++|+++.--+..+..+..| +.|+|++|+++..-...|..+++|++|||++|.++..+.. .|..+++|+.|.
T Consensus 320 ~~LdLs~N~i~~l~~~sf~~L~~L-e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 320 KELDLSSNRITRLDEGSFRVLSQL-EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred eeEeccccccccCChhHHHHHHHh-hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 666666666664444455555555 5666666666544444555566666666666666544432 345566666666
Q ss_pred CCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECc
Q 035922 476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLS 525 (581)
Q Consensus 476 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 525 (581)
+.+|++..+.-.+|..++.|+.|||.+|.|..+-|+.|..+ .|+.|-+.
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 66666654333466666666666666666665556666555 55555443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-38 Score=312.07 Aligned_cols=365 Identities=22% Similarity=0.231 Sum_probs=261.6
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN 177 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 177 (581)
+.|++++|.++..-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 67888888888777778888888888888888887 77766666667888888888887666677777888888888888
Q ss_pred cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc-CCCCccEEEcccccCcccCC
Q 035922 178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF-NRSSITTFSVVLNRMQGNIP 256 (581)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~ 256 (581)
.|+..--..+..-.++++|+|++|.|+......|..+.+|.+|.|++|+++ .+|...+ +++.|+.|++..|++.-.--
T Consensus 160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ 238 (873)
T KOG4194|consen 160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEG 238 (873)
T ss_pred hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehh
Confidence 887433345666677888888888887777777777778888888888887 5554433 36666666666665542111
Q ss_pred hhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcC
Q 035922 257 LDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKL 336 (581)
Q Consensus 257 ~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 336 (581)
.. ++.+ ++|+.|.+..|.+...-...|..+.++++|+|+.|++
T Consensus 239 lt-FqgL------------------------------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 239 LT-FQGL------------------------------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred hh-hcCc------------------------------------hhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 11 1112 3566666666666655455566677777777777777
Q ss_pred cccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcch
Q 035922 337 SGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQL 416 (581)
Q Consensus 337 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~ 416 (581)
+..-..++.++++|+.|++|+|.|...-+..+..+++|+.|+|++|+++...+..|..+..|++|+|++|.+...--..|
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 76666667777777777777777776666677777777777777777777777777777777777777777764334455
Q ss_pred hcccCCcceeEcCCCcccccCC---ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCC
Q 035922 417 FGLSSLSISLDLSRNHFTGSLP---IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR 493 (581)
Q Consensus 417 ~~l~~L~~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 493 (581)
..+.+| +.|||++|.++..+. ..|..+++|+.|++.+|++...--.+|..++.|+.|+|.+|.+..+-|++|..+
T Consensus 362 ~~lssL-~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m- 439 (873)
T KOG4194|consen 362 VGLSSL-HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM- 439 (873)
T ss_pred HHhhhh-hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-
Confidence 566667 777888887765543 346678888888888888874444578888888888888888887788888888
Q ss_pred CCCEEECCCC
Q 035922 494 GLSVWDFAQN 503 (581)
Q Consensus 494 ~L~~L~ls~n 503 (581)
.|+.|-+..-
T Consensus 440 ~Lk~Lv~nSs 449 (873)
T KOG4194|consen 440 ELKELVMNSS 449 (873)
T ss_pred hhhhhhhccc
Confidence 7887776543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1e-40 Score=316.21 Aligned_cols=437 Identities=27% Similarity=0.401 Sum_probs=365.4
Q ss_pred ccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCccc
Q 035922 84 AGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEF 163 (581)
Q Consensus 84 ~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 163 (581)
...+|++++.+..++.++.++|.+. .+|+.++.+.+|+.++.++|.+. .+|+.++.+..|+.++..+|+++ ..|+++
T Consensus 80 l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~ 156 (565)
T KOG0472|consen 80 LSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDM 156 (565)
T ss_pred hhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHH
Confidence 3568899999999999999999998 78999999999999999999999 88899999999999999999998 778899
Q ss_pred CCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccE
Q 035922 164 GSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITT 243 (581)
Q Consensus 164 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 243 (581)
.++.+|..+++.+|++. ..|+..-+++.|+++|...|-+ +.+|+.++.+.+|..|++.+|++. .+| .|..++.|++
T Consensus 157 ~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~E 232 (565)
T KOG0472|consen 157 VNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKE 232 (565)
T ss_pred HHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHH
Confidence 99999999999999999 5555555599999999999988 578889999999999999999998 777 8899999999
Q ss_pred EEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCC
Q 035922 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKL 323 (581)
Q Consensus 244 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 323 (581)
++++.|.+. .+|.+....++++..||+..|++. ..|+.++.+. +|.+||+++|.++ .+|..++++
T Consensus 233 lh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk------------e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 233 LHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK------------EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred HHhcccHHH-hhHHHHhcccccceeeeccccccc------------cCchHHHHhh-hhhhhcccCCccc-cCCcccccc
Confidence 999999887 788888877999999888888876 3578877775 8999999999998 566778988
Q ss_pred CCCCEEEeecCcCccc-------------------------------------cc----ccccCCCCCCeEeccCCcccc
Q 035922 324 VNLRRLYVWNNKLSGT-------------------------------------IP----SAIGDLQNLRMLGMSGNRFSG 362 (581)
Q Consensus 324 ~~L~~L~L~~n~l~~~-------------------------------------~~----~~l~~l~~L~~L~Ls~n~l~~ 362 (581)
.|+.|-+.+|.+... .+ .......+.+.|++++-+++
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt- 375 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT- 375 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-
Confidence 899999988876310 00 01123456788999998888
Q ss_pred cCCccCCCCC---CCcEEeecCcccCCCCcccccCCCCCcE-EECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922 363 NIPLSVGNLK---MLIQLEVSENFLQGTIPSSLCQCKSLIG-INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP 438 (581)
Q Consensus 363 ~~~~~~~~l~---~L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p 438 (581)
.+|.....-. -...++++.|++. ++|..+..++.+.+ +.+++|.+. -+|..+..++++ ..|++++|-+. .+|
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL-t~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL-TFLDLSNNLLN-DLP 451 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc-eeeecccchhh-hcc
Confidence 5565543333 3788999999998 77887777766654 455555554 889999999999 89999999998 799
Q ss_pred ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922 439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL 518 (581)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 518 (581)
..++.+..|+.||++.|+|. .+|.++..+..++.+-.++|++...-|+.+.+|.+|..||+.+|.+. .+|..++++.+
T Consensus 452 ~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 452 EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 99999999999999999998 99999988889999999999998766777999999999999999998 78888999999
Q ss_pred CCEEECcCCCCCCCCCCCccc-cCCcCcccccCCC
Q 035922 519 LENVNLSYNDLGARYVPTEGV-IKNSSATSVMGNS 552 (581)
Q Consensus 519 L~~L~ls~N~l~~~~ip~~~~-~~~l~~l~~~gN~ 552 (581)
|++|++++|++.. .|.... ..+...+++.+++
T Consensus 530 L~hLeL~gNpfr~--Pr~~iLmkgT~aiL~ylrdr 562 (565)
T KOG0472|consen 530 LRHLELDGNPFRQ--PRHQILMKGTAAILSYLRDR 562 (565)
T ss_pred eeEEEecCCccCC--CHHHHhccChHHHHHHhccc
Confidence 9999999999983 232222 2234445555554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=9e-38 Score=324.47 Aligned_cols=432 Identities=28% Similarity=0.373 Sum_probs=300.9
Q ss_pred CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922 96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF 175 (581)
Q Consensus 96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 175 (581)
+|+.||+++|.+. .+|..+..+++|+.|+++.|.|. ..|.+.+++.+|++|.|.+|.+. ..|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3777888877776 67777777788888888888777 66777777888888888877776 677777778888888888
Q ss_pred CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccC
Q 035922 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNI 255 (581)
Q Consensus 176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 255 (581)
.|++. .+|..+..+..++.+..++|..... ++... ++.+++..|.+.+.++..+.+++. .+++.+|.+. ..
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~ 193 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL 193 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh
Confidence 88777 6777777777777777777722222 22222 677777777777778777777766 7888888776 22
Q ss_pred ChhhhcCCCCCceeeccccCcc---------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCC
Q 035922 256 PLDFGFTLPNLQHFGIVFNNFT---------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNL 326 (581)
Q Consensus 256 ~~~~~~~l~~L~~L~l~~n~~~---------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 326 (581)
... .+++|+.+....|.+. ..++.+.|.++...+.-. +.+|+++++++|+++ .+|.|++.+.+|
T Consensus 194 dls---~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~-~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 194 DLS---NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLS-NLPEWIGACANL 266 (1081)
T ss_pred hhh---hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccc---cccceeeecchhhhh-cchHHHHhcccc
Confidence 211 2566666666666554 335555555553322222 137788888888877 456778888888
Q ss_pred CEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc-ccCCC-CCcEEECC
Q 035922 327 RRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS-LCQCK-SLIGINFS 404 (581)
Q Consensus 327 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~-~L~~L~ls 404 (581)
+.++..+|+++ .+|..+...++|+.|.+.+|.+. .+|....+++.|++|+|..|.+.. .|.. +.... +|..++.+
T Consensus 267 e~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 267 EALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred eEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhh
Confidence 88888888876 66777777778888888888776 666677777888888888887773 3332 22222 25555556
Q ss_pred CCcccccCCcc-hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922 405 KNNLSGTIPPQ-LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483 (581)
Q Consensus 405 ~n~l~~~~p~~-~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 483 (581)
.|++. ..|.. =..+..+ +.|.+.+|.++......+.++.+|+.|+|++|++.......+.+++.|++|+||||+++
T Consensus 344 ~n~l~-~lp~~~e~~~~~L-q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~- 420 (1081)
T KOG0618|consen 344 SNKLS-TLPSYEENNHAAL-QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT- 420 (1081)
T ss_pred hcccc-ccccccchhhHHH-HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-
Confidence 66655 33321 1223444 67888888888776667778888888888888887444456778888888888888887
Q ss_pred cCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCC
Q 035922 484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKL 554 (581)
Q Consensus 484 ~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~l 554 (581)
.+|+.+..+..|++|..-.|++. ..| .+..++.|+.+|+|.|+++-..+|...--++|+.++++||+++
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 67788888888888888888887 566 5778888888888888887664554433377888888888753
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=2.3e-36 Score=300.79 Aligned_cols=368 Identities=29% Similarity=0.424 Sum_probs=288.1
Q ss_pred cCCCCCcEEECCCCCCC-CCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCC
Q 035922 92 GNLSFLRRLHLDNNNFT-HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK 170 (581)
Q Consensus 92 ~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (581)
+-++.+|-.|+++|.++ +.+|.....+++++.|.|.+.++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 34567788889999888 568888888888888888888887 78888888888888888888887 4455677788888
Q ss_pred EEECCCCccc-ccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc-CCCCccEEEccc
Q 035922 171 DLRSFMNNLT-GSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF-NRSSITTFSVVL 248 (581)
Q Consensus 171 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~l~~ 248 (581)
.+.+.+|++. .-+|..+..+..|..|||++|++. ..|..+..-+++-.|++++|+|. .+|..++ ++
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL---------- 149 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL---------- 149 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhh----------
Confidence 8888888765 346777777788888888888773 56666766677777777777776 4443321 11
Q ss_pred ccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCE
Q 035922 249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRR 328 (581)
Q Consensus 249 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 328 (581)
+.|-.|||++|++. .+|+.+..+..|++
T Consensus 150 ---------------------------------------------------tDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 150 ---------------------------------------------------TDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred ---------------------------------------------------HhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 25566677777766 56677788888888
Q ss_pred EEeecCcCcccccccccCCCCCCeEeccCCccc-ccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922 329 LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS-GNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN 407 (581)
Q Consensus 329 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~ 407 (581)
|+|++|.+...--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .+|+.+..+++|+.|+||+|+
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 888888765333334456677888888876533 357888888888888888888888 778888888889999999998
Q ss_pred ccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc-ccCccccCCCCCcEEECCCCcCcccCc
Q 035922 408 LSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG-EIPISLGSCTSLEKLLMQGNKFYGPIP 486 (581)
Q Consensus 408 l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p 486 (581)
++ .+.........+ +.|++|+|+++ .+|.++..++.|+.|.+.+|+++. .+|..++.+..|+.+..++|.+. ..|
T Consensus 257 it-eL~~~~~~W~~l-EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVP 332 (1255)
T KOG0444|consen 257 IT-ELNMTEGEWENL-ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVP 332 (1255)
T ss_pred ee-eeeccHHHHhhh-hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCc
Confidence 88 666666667777 88899999998 788899999999999999998763 67888999999999999888886 789
Q ss_pred ccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922 487 SSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 487 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||+..|+-.-
T Consensus 333 EglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 99999999999999999987 678888889999999999886544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-35 Score=295.56 Aligned_cols=364 Identities=26% Similarity=0.347 Sum_probs=294.9
Q ss_pred CCCEEEccCCcCc-ccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccccccc
Q 035922 144 NIILMDLSVNQLL-GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222 (581)
Q Consensus 144 ~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 222 (581)
-.+-.|+++|.++ +..|.....|++++-|.|...++. .+|+.++.+.+|++|.+++|++.. +-..++.++.|+.+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhh
Confidence 3444555555555 355666666666666666666666 667777777777777777777643 3345677778888888
Q ss_pred CCccCCC-CCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccC
Q 035922 223 GGNMLSG-TIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT 301 (581)
Q Consensus 223 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~ 301 (581)
..|++.. .+|..++.+..|+.|++++|++. .+|. .+... .+
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~------------------------------------~LE~A-Kn 127 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT------------------------------------NLEYA-KN 127 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhh-hcch------------------------------------hhhhh-cC
Confidence 8887753 57888888888888888887776 3333 23222 37
Q ss_pred CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecC
Q 035922 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381 (581)
Q Consensus 302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 381 (581)
+-.|+|++|+|..+..+.+.+++.|-+|||++|++. .+|..+..+..|+.|+|++|.+...--..+..+++|++|.+++
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 889999999998555556788999999999999998 7888899999999999999988754334455678899999998
Q ss_pred ccc-CCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 382 NFL-QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 382 n~l-~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
.+- ...+|.++..+.+|..+|+|.|.+. .+|+.+..+.+| +.|+||+|+|+ ++....+.-.+|++|++|.|+++ .
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L-rrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~ 282 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL-RRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-V 282 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh-heeccCcCcee-eeeccHHHHhhhhhhccccchhc-c
Confidence 653 3458999999999999999999998 999999999999 89999999999 56556667789999999999999 8
Q ss_pred cCccccCCCCCcEEECCCCcCc-ccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc-c
Q 035922 461 IPISLGSCTSLEKLLMQGNKFY-GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE-G 538 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~-~ 538 (581)
+|.++..++.|+.|.+.+|++. .-||..++.+.+|+++..++|.+. .+|+.+..+..|+.|.|++|++.. +|+. .
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT--LPeaIH 359 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT--LPEAIH 359 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee--chhhhh
Confidence 9999999999999999999986 458999999999999999999997 899999999999999999999986 6764 6
Q ss_pred ccCCcCcccccCCCCCc
Q 035922 539 VIKNSSATSVMGNSKLC 555 (581)
Q Consensus 539 ~~~~l~~l~~~gN~~lc 555 (581)
.++.+..+++..||.+-
T Consensus 360 lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hcCCcceeeccCCcCcc
Confidence 67889999999999886
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1e-34 Score=301.89 Aligned_cols=450 Identities=24% Similarity=0.309 Sum_probs=364.7
Q ss_pred ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922 86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS 165 (581)
Q Consensus 86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (581)
.||..+..-..++.|+++.|.+-...-+.+.+.-+|+.||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|....+
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 46666666666899999999876443445556666999999999998 88999999999999999999998 67888999
Q ss_pred CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEE
Q 035922 166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFS 245 (581)
Q Consensus 166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 245 (581)
+.+|+++.|.+|.+. .+|.++..+++|++|++++|.+ +.+|..+..+..+..+..++|.....++. .. ++.++
T Consensus 90 ~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~ 162 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLD 162 (1081)
T ss_pred hhcchhheeccchhh-cCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhh
Confidence 999999999999998 8999999999999999999999 67888899999999999999933222222 22 88888
Q ss_pred cccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchh------hhhcccCCcEEEccCCcccccCchh
Q 035922 246 VVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPEC------ISNFSTTLASLFLDNNKIFGSIPPG 319 (581)
Q Consensus 246 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~------~~~~~~~L~~L~L~~n~l~~~~p~~ 319 (581)
+..|.+.+.++.+... +.. .+++.+|.+. .++++.+..-..+-.. +....++++.|+.++|.++...+.
T Consensus 163 l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~- 237 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH- 237 (1081)
T ss_pred hhhhhcccchhcchhh-hhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccc-
Confidence 9999888888877654 444 6889988887 6666655433322211 111125888999999988743322
Q ss_pred hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCc
Q 035922 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI 399 (581)
Q Consensus 320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 399 (581)
....+|+++++++|+++ .+|++++.+.+|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|......++|+
T Consensus 238 -p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~ 313 (1081)
T KOG0618|consen 238 -PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLR 313 (1081)
T ss_pred -cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceee
Confidence 23468999999999999 57799999999999999999996 78888888999999999999998 6677788899999
Q ss_pred EEECCCCcccccCCcchhcccCC-cceeEcCCCcccccCC-ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922 400 GINFSKNNLSGTIPPQLFGLSSL-SISLDLSRNHFTGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ 477 (581)
Q Consensus 400 ~L~ls~n~l~~~~p~~~~~l~~L-~~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 477 (581)
+|+|..|++. .+|+.+...... +..++.+.|.+. ..| ..=..++.|+.|++.+|+++...-+.+.+.+.|+.|+|+
T Consensus 314 tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 314 TLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence 9999999998 777755443322 256777778877 344 222346789999999999998888889999999999999
Q ss_pred CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922 478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~ 557 (581)
+|++.......+.++..|+.|+||+|.+. .+|..+..++.|++|...+|++.. .|+..+++.++.+|++-|..-=+.
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fPe~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FPELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--chhhhhcCcceEEecccchhhhhh
Confidence 99998444457789999999999999998 688999999999999999999986 788899999999999999744344
Q ss_pred C
Q 035922 558 I 558 (581)
Q Consensus 558 ~ 558 (581)
+
T Consensus 469 l 469 (1081)
T KOG0618|consen 469 L 469 (1081)
T ss_pred h
Confidence 3
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=8.1e-25 Score=253.18 Aligned_cols=340 Identities=21% Similarity=0.247 Sum_probs=200.1
Q ss_pred chhccCCCCCCEEEccCCC------CCCCCcccCcCCC-CCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCC
Q 035922 112 PPEIGRLRRLRGLTLNNNS------IGGEIPATMSRCS-NIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIP 184 (581)
Q Consensus 112 p~~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 184 (581)
+..|.++++|++|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4467778888888876543 2234566666654 5888888887776 556565 4678888888888776 567
Q ss_pred ccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCC
Q 035922 185 SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP 264 (581)
Q Consensus 185 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 264 (581)
..+..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|.....+|..+ .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 7777788888888887765555663 6777888888888877666778888888888888888776555666544 356
Q ss_pred CCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc-------
Q 035922 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS------- 337 (581)
Q Consensus 265 ~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------- 337 (581)
+|+.|++++|... +.+|+. ..+|+.|++++|.+. .+|..+ .+++|++|++.++...
T Consensus 705 sL~~L~Lsgc~~L-----------~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~ 767 (1153)
T PLN03210 705 SLYRLNLSGCSRL-----------KSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQ 767 (1153)
T ss_pred CCCEEeCCCCCCc-----------cccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcccccc
Confidence 6666655554321 122221 136677777777665 445433 4566666666653321
Q ss_pred ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchh
Q 035922 338 GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF 417 (581)
Q Consensus 338 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 417 (581)
...+......++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|++|++++|.....+|...
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~- 845 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS- 845 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc-
Confidence 0111111223456666666655555555555566666666666554444445443 45556666665554433343321
Q ss_pred cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCc
Q 035922 418 GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK 480 (581)
Q Consensus 418 ~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 480 (581)
.++ +.|++++|.++ .+|..+..+++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 846 --~nL-~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 --TNI-SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred --ccc-CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 233 45555555555 455555555555555555533222444445555555555555553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=5.5e-25 Score=254.55 Aligned_cols=338 Identities=19% Similarity=0.233 Sum_probs=273.1
Q ss_pred cccCCCCCcEEECCCCC------CCCCCchhccCCC-CCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922 90 YIGNLSFLRRLHLDNNN------FTHAIPPEIGRLR-RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE 162 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 162 (581)
.|..+.+|+.|.+..+. +...+|+.+..++ +|+.|++.++.+. .+|..+ ...+|++|++++|.+. .++..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 57889999999997653 3335677777764 6999999999987 778777 5789999999999987 67888
Q ss_pred cCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCcc
Q 035922 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT 242 (581)
Q Consensus 163 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 242 (581)
+..+++|++|+++++...+.+| .++.+++|++|++++|.....+|..+.++++|+.|++++|..-+.+|..+ ++++|+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 8999999999999987666777 48899999999999998778899999999999999999987666888766 789999
Q ss_pred EEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccc-------cc
Q 035922 243 TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIF-------GS 315 (581)
Q Consensus 243 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~-------~~ 315 (581)
.|++++|.....+|.. ..+|+.|++.+|.+. .+|..+ .+ ++|+.|.+.++... ..
T Consensus 708 ~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~------------~lP~~~-~l-~~L~~L~l~~~~~~~l~~~~~~l 769 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI----STNISWLDLDETAIE------------EFPSNL-RL-ENLDELILCEMKSEKLWERVQPL 769 (1153)
T ss_pred EEeCCCCCCccccccc----cCCcCeeecCCCccc------------cccccc-cc-cccccccccccchhhcccccccc
Confidence 9999998766665532 467777777766543 234433 23 37888888774321 11
Q ss_pred CchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCC
Q 035922 316 IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQC 395 (581)
Q Consensus 316 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 395 (581)
.+......++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .
T Consensus 770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---c
Confidence 22223345789999999998877899999999999999999987666778765 7899999999999766566643 4
Q ss_pred CCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCc
Q 035922 396 KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL 456 (581)
Q Consensus 396 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 456 (581)
.+|++|++++|.+. .+|.++..+++| +.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L-~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSRTGIE-EVPWWIEKFSNL-SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCCCCCc-cChHHHhcCCCC-CEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 68999999999998 899999999999 899999965444688888999999999999985
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-26 Score=219.38 Aligned_cols=418 Identities=22% Similarity=0.249 Sum_probs=229.3
Q ss_pred CCccccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccC
Q 035922 73 HFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152 (581)
Q Consensus 73 ~~c~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 152 (581)
-.|+-.|-..+...+|+.. ..++|..|+|+.+.|.+|+.+++||.||||+|.|+.+-|++|..+.+|..|-+-+
T Consensus 51 VdCr~~GL~eVP~~LP~~t------veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPET------VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred EEccCCCcccCcccCCCcc------eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 4566665555555555543 6778888888877777788888888888888888877777777777776665554
Q ss_pred -CcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCC
Q 035922 153 -NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTI 231 (581)
Q Consensus 153 -n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 231 (581)
|+|+......|+++..|+.|.+.-|++.-...+.|..+++|..|.+..|.+...--..|..+..++++.+..|.+...
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd- 203 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD- 203 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc-
Confidence 777765556677777777777777777655556667777777777777776433333666677777777766664311
Q ss_pred CccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc
Q 035922 232 PSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311 (581)
Q Consensus 232 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~ 311 (581)
.+++.+..... .+ |.++.. ..-.....+.+.++. -.-+..+......+.+-..+.+.
T Consensus 204 ----CnL~wla~~~a-~~------~ietsg-arc~~p~rl~~~Ri~-----------q~~a~kf~c~~esl~s~~~~~d~ 260 (498)
T KOG4237|consen 204 ----CNLPWLADDLA-MN------PIETSG-ARCVSPYRLYYKRIN-----------QEDARKFLCSLESLPSRLSSEDF 260 (498)
T ss_pred ----cccchhhhHHh-hc------hhhccc-ceecchHHHHHHHhc-----------ccchhhhhhhHHhHHHhhccccC
Confidence 01111111000 00 000000 000111111111110 00000011000011111112222
Q ss_pred ccccCch-hhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcc
Q 035922 312 IFGSIPP-GIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPS 390 (581)
Q Consensus 312 l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 390 (581)
..+..|. .|..+++|++|+|++|+++++-+.+|.+...+++|.|..|++...-...|.++..|+.|+|.+|+++...|.
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 3333332 366777777777777777777777777777777777777777655555667777777777777777777777
Q ss_pred cccCCCCCcEEECCCCccccc-----CCcchhc----------ccCCcceeEcCCCcccc---cCCcccc---------C
Q 035922 391 SLCQCKSLIGINFSKNNLSGT-----IPPQLFG----------LSSLSISLDLSRNHFTG---SLPIEVG---------N 443 (581)
Q Consensus 391 ~l~~l~~L~~L~ls~n~l~~~-----~p~~~~~----------l~~L~~~L~Ls~n~l~~---~~p~~l~---------~ 443 (581)
.|..+.+|.+|++-.|.+.-. +-+|+.+ -+..++.++++...+.. ..|+..+ .
T Consensus 341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~ 420 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPP 420 (498)
T ss_pred cccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCC
Confidence 777777777777766655311 1111111 01111233333332210 1111111 1
Q ss_pred CCCCC-eeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEE
Q 035922 444 LKNLG-VLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENV 522 (581)
Q Consensus 444 l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L 522 (581)
++.+. +...|+..+. .+|..+. ..-.+|++.+|.++ .+|.. .+.+| .+|+|+|++...--..|.++.+|.+|
T Consensus 421 c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl 493 (498)
T KOG4237|consen 421 CTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL 493 (498)
T ss_pred cchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence 12222 2223333333 4443332 23456777788777 55654 55666 77888888775555567777778888
Q ss_pred ECcCC
Q 035922 523 NLSYN 527 (581)
Q Consensus 523 ~ls~N 527 (581)
-+|||
T Consensus 494 ilsyn 498 (498)
T KOG4237|consen 494 ILSYN 498 (498)
T ss_pred EEecC
Confidence 77776
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=4.2e-26 Score=216.94 Aligned_cols=388 Identities=21% Similarity=0.183 Sum_probs=262.3
Q ss_pred ccccC-ccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccC-CCCCCCCcccCcCCCCCCEEEccCCcCcccCCc
Q 035922 84 AGSIS-PYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNN-NSIGGEIPATMSRCSNIILMDLSVNQLLGNIPP 161 (581)
Q Consensus 84 ~g~i~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 161 (581)
...|| .+|+.+++||+||||+|+|+.+-|++|..+++|..|-+.+ |+|+.....+|+++..|+.|.+.-|++.-...+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 34455 4889999999999999999999999999999998877765 999977777899999999999999999988888
Q ss_pred ccCCCCCCCEEECCCCcccccCCc-cCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCC
Q 035922 162 EFGSLSKIKDLRSFMNNLTGSIPS-SLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS 240 (581)
Q Consensus 162 ~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 240 (581)
.|..+++|..|.+.+|.+. .++. .+..+..++.+.+..|.+.. ..+++.+..... .+. ..++....
T Consensus 159 al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~a-~~~------ietsgarc 225 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDLA-MNP------IETSGARC 225 (498)
T ss_pred HHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHHh-hch------hhccccee
Confidence 9999999999999999998 4554 78899999999999887421 122222221111 111 01111111
Q ss_pred ccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhh
Q 035922 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGI 320 (581)
Q Consensus 241 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l 320 (581)
.....+.+.++...-...+... ++.+- + -..+.+...+..|..-++-.++|++|++++|+++++-+.+|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~---~esl~-------s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCS---LESLP-------S-RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred cchHHHHHHHhcccchhhhhhh---HHhHH-------H-hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 1111111111111111111100 00000 0 00011122233444333333588899999999988888889
Q ss_pred cCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCC--------------
Q 035922 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQG-------------- 386 (581)
Q Consensus 321 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------- 386 (581)
.....++.|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|++-.|.+.-
T Consensus 295 e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~ 374 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK 374 (498)
T ss_pred cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC
Confidence 999999999999998886666778888999999999999998888888888899999888776531
Q ss_pred ---CCcccccCCCCCcEEECCCCccc---ccCCcch---------hcccCCcceeEcCCCcccccCCccccCCCCCCeee
Q 035922 387 ---TIPSSLCQCKSLIGINFSKNNLS---GTIPPQL---------FGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLD 451 (581)
Q Consensus 387 ---~~p~~l~~l~~L~~L~ls~n~l~---~~~p~~~---------~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 451 (581)
..|. -+....++.+.++...+. ...|++. ...+-+.+....|+..+. .+|..+. ..-++|+
T Consensus 375 ~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~tely 450 (498)
T KOG4237|consen 375 SVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELY 450 (498)
T ss_pred CCCCCCC-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHh
Confidence 0111 122334666666655442 1122221 122333344556666665 5555443 3567899
Q ss_pred ccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922 452 ISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503 (581)
Q Consensus 452 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 503 (581)
+.+|.++ .+|.. .+.+| .+++++|++...--..|.++++|.+|-+++|
T Consensus 451 l~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 451 LDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 9999999 77876 67888 8999999998666678999999999999886
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.4e-21 Score=210.73 Aligned_cols=183 Identities=29% Similarity=0.362 Sum_probs=90.0
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+|+.|++++|+++ .+|. ..++|++|++++|++++ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence 3444444444444 2232 12445555555555552 2221 1234455555555542 3321 1345555555
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|++++ +|.. ..+|+.|++++|++. .+|... ..| +.|++++|+++ .+|.. .++|+.|++++|+++ .
T Consensus 351 ~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 351 DNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred CCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 555552 3321 234555555555555 344322 233 55666666655 24432 245666666666665 3
Q ss_pred cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhh
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFL 513 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l 513 (581)
+|.. ..+|+.|++++|+++ .+|+.+..++.|+.|++++|.+++.+|..+
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4432 234555666666665 456666666666666666666666555544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.3e-21 Score=211.07 Aligned_cols=142 Identities=30% Similarity=0.372 Sum_probs=63.5
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.|+.|++++|.+++ +|.. ..+|++|++++|++++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|+++
T Consensus 323 ~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 323 ELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVS 390 (788)
T ss_pred cccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEec
Confidence 34444455555442 3321 1245555555555552 3321 134455555555554 23322 1345555555
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|++++ +|.. .++|+.|++++|+++ .+|... ..+ +.|++++|+++ .+|..+.++++|+.|+|++|++++.
T Consensus 391 ~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L-~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 391 GNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGL-LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhh-hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 555552 3321 234555555555554 344322 122 34455555554 4444444455555555555555444
Q ss_pred cCcc
Q 035922 461 IPIS 464 (581)
Q Consensus 461 ~p~~ 464 (581)
.+..
T Consensus 461 ~~~~ 464 (788)
T PRK15387 461 TLQA 464 (788)
T ss_pred HHHH
Confidence 4433
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=3.7e-20 Score=201.08 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=27.6
Q ss_pred cCCCHhHHHHHHHHHhcCCCCCCCCCCC----CCCCCCCccccC
Q 035922 40 VAGNETDREALLEFKSKITVDPFGVLGS----WNESSHFCKWHE 79 (581)
Q Consensus 40 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~----w~~~~~~c~w~~ 79 (581)
....+++.+.++++.+.+. -| +...+ |.+.+++|.-.+
T Consensus 58 ~~~~~~~~~~~~~~~~~l~-~p-~~~~~~~~~~~~~~~fc~~~~ 99 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLA-FP-AYADNIQYSRGGADQYCILSE 99 (754)
T ss_pred CCCCHHHHHHHHHHHHHhc-CC-chhhccccccCCCCcccccCC
Confidence 3456788899999999885 33 24444 988889998665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=3.8e-20 Score=200.94 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCC
Q 035922 169 IKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLS 228 (581)
Q Consensus 169 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 228 (581)
...|+++++.++ .+|..+. +.|+.|++++|.++. +|..+. ++|++|++++|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt 233 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT 233 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc
Confidence 344555554444 3343332 245555555555442 232221 24455555555444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.8e-20 Score=187.46 Aligned_cols=252 Identities=21% Similarity=0.216 Sum_probs=171.8
Q ss_pred CCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCcc------cccccccCCCCCCeEeccCCcccccCCccCCC
Q 035922 301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSG------TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN 370 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 370 (581)
.|+.|+++++.++.. ++..+...+++++++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 678888888777432 44556667778888888876652 23445667778888888888876544444444
Q ss_pred CCC---CcEEeecCcccCCC----CcccccCC-CCCcEEECCCCccccc----CCcchhcccCCcceeEcCCCccccc--
Q 035922 371 LKM---LIQLEVSENFLQGT----IPSSLCQC-KSLIGINFSKNNLSGT----IPPQLFGLSSLSISLDLSRNHFTGS-- 436 (581)
Q Consensus 371 l~~---L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~-- 436 (581)
+.+ |++|++++|++.+. +...+..+ ++|++|++++|.+++. ++..+..+..+ +.|++++|.+++.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence 444 88888888887632 22344555 7888888888888732 33445556677 7888888888742
Q ss_pred --CCccccCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCcccCccccc-----CCCCCCEEECCCCcc
Q 035922 437 --LPIEVGNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGPIPSSLR-----SLRGLSVWDFAQNNL 505 (581)
Q Consensus 437 --~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~ls~n~l 505 (581)
++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.....+. ..+.|+.|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 333455567899999999988643 344566788899999999988763333332 237899999999988
Q ss_pred c----cccchhhhcCCCCCEEECcCCCCCCCC---CC-Ccccc-CCcCcccccCCCC
Q 035922 506 S----GEIPKFLAGFKLLENVNLSYNDLGARY---VP-TEGVI-KNSSATSVMGNSK 553 (581)
Q Consensus 506 ~----~~~p~~l~~l~~L~~L~ls~N~l~~~~---ip-~~~~~-~~l~~l~~~gN~~ 553 (581)
+ ..+...+..++.|+++++++|++.... +. ....+ ..++.+++.+||+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 6 234456677788999999999987431 11 11233 5677888888874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=6.5e-20 Score=184.85 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=126.0
Q ss_pred hcCCCCCCEEEeecCcCcccccccccCCCC---CCeEeccCCcccc----cCCccCCCC-CCCcEEeecCcccCCC----
Q 035922 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQN---LRMLGMSGNRFSG----NIPLSVGNL-KMLIQLEVSENFLQGT---- 387 (581)
Q Consensus 320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~~~~~~~l-~~L~~L~L~~n~l~~~---- 387 (581)
+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 444455555555555554333333333332 5555555555442 111223333 5566666666665532
Q ss_pred CcccccCCCCCcEEECCCCccccc----CCcchhcccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCcc
Q 035922 388 IPSSLCQCKSLIGINFSKNNLSGT----IPPQLFGLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSG 459 (581)
Q Consensus 388 ~p~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~ 459 (581)
++..+..+++|++|++++|.+.+. ++..+..++.+ +.|++++|.+++. +...+..+++|++|++++|.+++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L-~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCC-CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 233445556677777777766532 22333444566 6777777776533 33445667889999999988875
Q ss_pred ccCcccc-----CCCCCcEEECCCCcCcc----cCcccccCCCCCCEEECCCCccccc----cchhhhcC-CCCCEEECc
Q 035922 460 EIPISLG-----SCTSLEKLLMQGNKFYG----PIPSSLRSLRGLSVWDFAQNNLSGE----IPKFLAGF-KLLENVNLS 525 (581)
Q Consensus 460 ~~p~~l~-----~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~----~p~~l~~l-~~L~~L~ls 525 (581)
.....+. ..+.|+.|++++|.+++ .+.+.+..+++|+.+++++|.+... +...+... +.|+++++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 3332222 24789999999998862 2345566778999999999999854 44555555 789999998
Q ss_pred CCCC
Q 035922 526 YNDL 529 (581)
Q Consensus 526 ~N~l 529 (581)
+|++
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 8864
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2e-19 Score=152.71 Aligned_cols=186 Identities=31% Similarity=0.515 Sum_probs=132.8
Q ss_pred cCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcE
Q 035922 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIG 400 (581)
Q Consensus 321 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 400 (581)
-.+..++.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|.+++.+++|+.|+++-|++. ..|..|+.++.|++
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556667777777777 56666777777777777777776 66777777777777777777776 66777777777888
Q ss_pred EECCCCccc-ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCC
Q 035922 401 INFSKNNLS-GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479 (581)
Q Consensus 401 L~ls~n~l~-~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 479 (581)
||+++|++. ..+|..|+.+..+ +.|+++.|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|++|++.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 888777775 3467778888888 78888888887 77888888888888888888877 77888888888888888888
Q ss_pred cCcccCcccccCCC---CCCEEECCCCccccccchhh
Q 035922 480 KFYGPIPSSLRSLR---GLSVWDFAQNNLSGEIPKFL 513 (581)
Q Consensus 480 ~l~~~~p~~l~~l~---~L~~L~ls~n~l~~~~p~~l 513 (581)
+++ .+|..++++. +-+.+.+.+|.....|.+.|
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf 219 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAEQF 219 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHHHH
Confidence 887 4454455442 33444555555544444433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=5.1e-19 Score=150.20 Aligned_cols=163 Identities=26% Similarity=0.410 Sum_probs=105.3
Q ss_pred CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922 346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS 425 (581)
Q Consensus 346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~ 425 (581)
.+.+.+.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++.+++|+.|+++-|++. .+|..|+.++.+ +.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l-ev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL-EV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh-hh
Confidence 4556666777777776 55666666777777777777766 55666666777777777666666 666666666666 66
Q ss_pred eEcCCCcccc-cCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCc
Q 035922 426 LDLSRNHFTG-SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNN 504 (581)
Q Consensus 426 L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 504 (581)
||++.|++.. .+|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+.+|.+. .+|..++.+++|+.|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 6666666642 35666666666666666666666 66666666666666666666665 556666666666666666666
Q ss_pred cccccchhhhc
Q 035922 505 LSGEIPKFLAG 515 (581)
Q Consensus 505 l~~~~p~~l~~ 515 (581)
++ .+|..++.
T Consensus 185 l~-vlppel~~ 194 (264)
T KOG0617|consen 185 LT-VLPPELAN 194 (264)
T ss_pred ee-ecChhhhh
Confidence 65 34433443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=149.79 Aligned_cols=154 Identities=29% Similarity=0.463 Sum_probs=123.2
Q ss_pred CCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc-----cccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhc
Q 035922 41 AGNETDREALLEFKSKITVDPFGVLGSWNESSHFC-----KWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEI 115 (581)
Q Consensus 41 ~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c-----~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 115 (581)
...++|.+||+++|+.+. ++.. .+|.+ ++| .|.|..+-.. .. .....++.|+|++|.+.+.+|..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~---~~-~~~~~v~~L~L~~n~L~g~ip~~i 438 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPLR--FGWNG--DPCVPQQHPWSGADCQFD---ST-KGKWFIDGLGLDNQGLRGFIPNDI 438 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Cccc--CCCCC--CCCCCcccccccceeecc---CC-CCceEEEEEECCCCCccccCCHHH
Confidence 345678999999999985 4432 47964 344 6887543211 00 112257889999999999999999
Q ss_pred cCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCC-CCCc
Q 035922 116 GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNL-SSII 194 (581)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~ 194 (581)
+.+++|++|+|++|.+.|.+|..++.+++|++|+|++|.+++.+|+.++++++|++|++++|+++|.+|..++.. .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887653 4567
Q ss_pred EEEccCCCC
Q 035922 195 RLSLTYNNI 203 (581)
Q Consensus 195 ~L~l~~n~l 203 (581)
.+++.+|..
T Consensus 519 ~l~~~~N~~ 527 (623)
T PLN03150 519 SFNFTDNAG 527 (623)
T ss_pred eEEecCCcc
Confidence 777777754
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.38 E-value=1e-12 Score=142.78 Aligned_cols=118 Identities=31% Similarity=0.493 Sum_probs=104.8
Q ss_pred CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECc
Q 035922 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLS 525 (581)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls 525 (581)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.||+++|++++.+|+.+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCc--cccCCcCcccccCCCCCccCCCCCCCCCCC
Q 035922 526 YNDLGARYVPTE--GVIKNSSATSVMGNSKLCGGIPKLQFPRCT 567 (581)
Q Consensus 526 ~N~l~~~~ip~~--~~~~~l~~l~~~gN~~lcg~~~~~~~~~c~ 567 (581)
+|+++|. +|.. ..+..+..+++.+|+++||.+ . .+.|.
T Consensus 499 ~N~l~g~-iP~~l~~~~~~~~~l~~~~N~~lc~~p-~--l~~C~ 538 (623)
T PLN03150 499 GNSLSGR-VPAALGGRLLHRASFNFTDNAGLCGIP-G--LRACG 538 (623)
T ss_pred CCccccc-CChHHhhccccCceEEecCCccccCCC-C--CCCCc
Confidence 9999998 8863 223456788999999999853 2 35675
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=3.1e-14 Score=142.57 Aligned_cols=173 Identities=29% Similarity=0.431 Sum_probs=100.6
Q ss_pred CCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEEC
Q 035922 324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF 403 (581)
Q Consensus 324 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 403 (581)
..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|+++ ..|..++.++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33445566666665 55555555666666666666665 55556666666666666666665 4455555554 566666
Q ss_pred CCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922 404 SKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483 (581)
Q Consensus 404 s~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 483 (581)
++|+++ .+|+.++...++ ..||.+.|++. .+|..++++.+|+.|.+..|++. .+|+.+. .-.|..||+|.|+++
T Consensus 151 sNNkl~-~lp~~ig~~~tl-~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTL-AHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred ecCccc-cCCcccccchhH-HHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 666665 556555555555 45666666655 45555555666666666666655 4455554 234555666666665
Q ss_pred cCcccccCCCCCCEEECCCCccc
Q 035922 484 PIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 484 ~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
.+|-.|.+|..|++|-|.+|.+.
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 45555666666666666666554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=4.2e-14 Score=141.58 Aligned_cols=192 Identities=33% Similarity=0.467 Sum_probs=166.8
Q ss_pred CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922 346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS 425 (581)
Q Consensus 346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~ 425 (581)
.+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|+++|++.|+++ .+|..++.++ | +.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-L-kv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-L-KV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-c-ee
Confidence 4555667899999998 88999999999999999999998 78889999999999999999999 8999998775 4 67
Q ss_pred eEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcc
Q 035922 426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNL 505 (581)
Q Consensus 426 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l 505 (581)
|-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.+|+.|.+..|++. .+|+.+..+ .|..||+|+|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 999999999 89999999999999999999998 88999999999999999999998 567777766 588999999999
Q ss_pred ccccchhhhcCCCCCEEECcCCCCCCCCCCC----ccccCCcCccccc
Q 035922 506 SGEIPKFLAGFKLLENVNLSYNDLGARYVPT----EGVIKNSSATSVM 549 (581)
Q Consensus 506 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~----~~~~~~l~~l~~~ 549 (581)
+ .||..|.+++.|++|-|.+|+++.. |. .|...=++.++..
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqSP--PAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQSP--PAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCCC--hHHHHhccceeeeeeecch
Confidence 8 8999999999999999999999853 42 2444444555554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=3.2e-12 Score=132.69 Aligned_cols=199 Identities=36% Similarity=0.508 Sum_probs=132.1
Q ss_pred EEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCC-CCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQ-NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382 (581)
Q Consensus 304 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 382 (581)
.+++..+.+...+.. +..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCchh-hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 467777766433332 445567788888888777 4555555553 7888888888776 45455677777777888777
Q ss_pred ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 035922 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIP 462 (581)
Q Consensus 383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 462 (581)
++. .+|......+.|+.|++++|++. .+|........+ .++++++|++. ..+..+.++..+..+.+.+|++. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh-hhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 777 44444446777777777777777 666655444445 67777777544 45556667777777777777766 335
Q ss_pred ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchh
Q 035922 463 ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512 (581)
Q Consensus 463 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 512 (581)
..++.+++++.|++++|.++.. +. ++.+.+++.|++++|.+...+|..
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 5666777777777777777633 33 667777777777777776655543
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=4.4e-12 Score=131.62 Aligned_cols=179 Identities=38% Similarity=0.564 Sum_probs=115.0
Q ss_pred CCcEEEccCCcccccCchhhcCCC-CCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLV-NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|++. .++......+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 5677777777776 4444455553 6777777777776 44455667777777777777776 44444446677777777
Q ss_pred cCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 035922 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459 (581)
Q Consensus 380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 459 (581)
++|++. .+|........|+++.+++|.+. ..+..+..+..+ ..+.+.+|++. .++..++.+++++.|++++|+++
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l-~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL-SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc-cccccCCceee-eccchhccccccceecccccccc-
Confidence 777776 44554444555777777777544 455556666666 56667777666 33556666677777777777776
Q ss_pred ccCccccCCCCCcEEECCCCcCcccCccc
Q 035922 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSS 488 (581)
Q Consensus 460 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 488 (581)
.++. ++.+.+++.|++++|.+....|..
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred cccc-ccccCccCEEeccCccccccchhh
Confidence 4443 666777777777777776555543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=5.7e-12 Score=116.96 Aligned_cols=128 Identities=27% Similarity=0.305 Sum_probs=56.3
Q ss_pred CCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEEC
Q 035922 397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM 476 (581)
Q Consensus 397 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 476 (581)
.|+++|+++|.|+ .+..++.-.+.+ +.|++|.|.+. .+. .+..+++|+.||||+|.++ .+..+-..+-+.++|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccce-eEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3445555555544 444444444444 44555555544 221 2444445555555555444 22222233444444555
Q ss_pred CCCcCcccCcccccCCCCCCEEECCCCccccccc-hhhhcCCCCCEEECcCCCCCC
Q 035922 477 QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP-KFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 477 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~ 531 (581)
++|.+... ..++.+-+|..||+++|+|...-. ..++++|.|+++.+.+|++.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55544311 233444444555555554432111 234444555555555555544
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=2.7e-12 Score=121.90 Aligned_cols=228 Identities=21% Similarity=0.213 Sum_probs=139.7
Q ss_pred CCcEEEccCCccccc----CchhhcCCCCCCEEEeecC---cCcccccc-------cccCCCCCCeEeccCCcccccCCc
Q 035922 301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNN---KLSGTIPS-------AIGDLQNLRMLGMSGNRFSGNIPL 366 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n---~l~~~~~~-------~l~~l~~L~~L~Ls~n~l~~~~~~ 366 (581)
+++.+++++|.+... +...+.+.++|+..++++- +....+|+ ++..+++|++++||.|-+.-..+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 677777777776533 3334555667777776653 11222332 334566777777777766543333
Q ss_pred c----CCCCCCCcEEeecCcccCCCC-------------cccccCCCCCcEEECCCCccccc----CCcchhcccCCcce
Q 035922 367 S----VGNLKMLIQLEVSENFLQGTI-------------PSSLCQCKSLIGINFSKNNLSGT----IPPQLFGLSSLSIS 425 (581)
Q Consensus 367 ~----~~~l~~L~~L~L~~n~l~~~~-------------p~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~~ 425 (581)
. +..+..|++|+|.+|.+...- ......-+.|+++...+|++... +...+...+.+ ..
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l-ee 189 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL-EE 189 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc-ce
Confidence 2 244677777777777654211 11233456788888887776421 22344455566 77
Q ss_pred eEcCCCccccc----CCccccCCCCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCcccCcccc-----cCC
Q 035922 426 LDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGPIPSSL-----RSL 492 (581)
Q Consensus 426 L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-----~~l 492 (581)
+.++.|.|... +...+..+++|+.|||++|.++. .+...+..++.|+.|++++|.+...-...| ...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 77777776422 23456678888888888887763 234456677788888888888764433222 235
Q ss_pred CCCCEEECCCCccccc----cchhhhcCCCCCEEECcCCCC
Q 035922 493 RGLSVWDFAQNNLSGE----IPKFLAGFKLLENVNLSYNDL 529 (581)
Q Consensus 493 ~~L~~L~ls~n~l~~~----~p~~l~~l~~L~~L~ls~N~l 529 (581)
+.|++|++.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7888888888887642 333455677888888888887
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=1.9e-11 Score=135.55 Aligned_cols=132 Identities=29% Similarity=0.366 Sum_probs=99.5
Q ss_pred cCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCC--CCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922 92 GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNS--IGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI 169 (581)
Q Consensus 92 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (581)
.+....|...+.+|.+. .++.. ...+.|++|-+.+|. +.....+.|..++.|++|||++|.--+.+|..++.+.+|
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34456677887777765 23332 234578888888885 553444557788889999999887777888888888999
Q ss_pred CEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCcc
Q 035922 170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM 226 (581)
Q Consensus 170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 226 (581)
|+|+++++.+. .+|..+.+++.|.+|++..+.....+|.....+++|++|.+....
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999888888 888888888888888888877656666666778888888776654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.1e-11 Score=113.17 Aligned_cols=130 Identities=24% Similarity=0.197 Sum_probs=92.7
Q ss_pred hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCC
Q 035922 416 LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGL 495 (581)
Q Consensus 416 ~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 495 (581)
+..+..+ +.+|||+|.|+ .+.++..-.|.++.|++|+|.+. .+. .+..+++|+.||||+|.++ .+..+-..+-++
T Consensus 280 ~dTWq~L-telDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQEL-TELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhh-hhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 3334455 77888888887 66667777788888888888886 333 3777888888888888887 444455567788
Q ss_pred CEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC-CCCccccCCcCcccccCCC
Q 035922 496 SVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY-VPTEGVIKNSSATSVMGNS 552 (581)
Q Consensus 496 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-ip~~~~~~~l~~l~~~gN~ 552 (581)
+.|.++.|.+... ..+..+-+|..||+++|++.... +-..+.++.|+.+.+.+||
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8888888877532 45677778888888888876431 2234667778888888888
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=3.4e-11 Score=114.48 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=47.0
Q ss_pred hccCCCCCCEEEccCCCCCCC----CcccCcCCCCCCEEEccCCcCccc----CCcccCCCCCCCEEECCCCcccccCCc
Q 035922 114 EIGRLRRLRGLTLNNNSIGGE----IPATMSRCSNIILMDLSVNQLLGN----IPPEFGSLSKIKDLRSFMNNLTGSIPS 185 (581)
Q Consensus 114 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~ 185 (581)
.+..+..+..++|++|.|... +...+.+.++|+..++|+ .++|. +|+.+. .+-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~-----------------~l~~ 86 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALK-----------------MLSK 86 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHH-----------------HHHH
Confidence 345566677777777766532 223344555666666653 22221 221110 0011
Q ss_pred cCcCCCCCcEEEccCCCCCCcCCC----ccCCCCcccccccCCccCC
Q 035922 186 SLGNLSSIIRLSLTYNNIARSIPD----TLGYLENLSFLSLGGNMLS 228 (581)
Q Consensus 186 ~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l~ 228 (581)
.+-.+++|++++||.|-+.-..+. .+..+..|++|.|.+|.+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 233445566666666655333222 2344566666666666654
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.7e-11 Score=116.56 Aligned_cols=204 Identities=25% Similarity=0.200 Sum_probs=104.7
Q ss_pred CCcEEEccCCcccccCc-hhhcCCCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccC-CCCCCCcE
Q 035922 301 TLASLFLDNNKIFGSIP-PGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQ 376 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~ 376 (581)
+|+.+.|.++....... .....|++++.|||+.|-+.. .+......+++|+.|+++.|++........ ..++.|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 55556666555442111 244556667777777665542 222334466677777777776653222111 23566666
Q ss_pred EeecCcccCCC-CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC--ccccCCCCCCeeecc
Q 035922 377 LEVSENFLQGT-IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP--IEVGNLKNLGVLDIS 453 (581)
Q Consensus 377 L~L~~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls 453 (581)
|.++.|.++.. +-..+..+|+|+.|++..|...+.-.....-+..+ +.|||++|++- ..+ ...+.++.|+.|+++
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L-~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTL-QELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHH-hhccccCCccc-ccccccccccccchhhhhcc
Confidence 77776666532 22233456666777776664322222223333444 56666666654 222 334556666666666
Q ss_pred CCcCccc-cCcc-----ccCCCCCcEEECCCCcCccc-CcccccCCCCCCEEECCCCccc
Q 035922 454 GNLLSGE-IPIS-----LGSCTSLEKLLMQGNKFYGP-IPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 454 ~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
.|.+... .|.. ...+++|+.|+++.|++... .-..+..+++|+.|.+-.|.+.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6666531 1222 23456666666666666421 0123344455555555555554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3e-11 Score=117.89 Aligned_cols=209 Identities=22% Similarity=0.201 Sum_probs=141.5
Q ss_pred cCCCCCCEEEeecCcCccccc--ccccCCCCCCeEeccCCcccccC--CccCCCCCCCcEEeecCcccCCCCccc-ccCC
Q 035922 321 GKLVNLRRLYVWNNKLSGTIP--SAIGDLQNLRMLGMSGNRFSGNI--PLSVGNLKMLIQLEVSENFLQGTIPSS-LCQC 395 (581)
Q Consensus 321 ~~l~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l 395 (581)
.++.+|+.+.|.++... ..+ .....|++++.||++.|-++... -.....+++|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 56788999999988776 233 35668899999999999877422 223456899999999999876332211 1246
Q ss_pred CCCcEEECCCCcccc-cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcccc-CccccCCCCCcE
Q 035922 396 KSLIGINFSKNNLSG-TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI-PISLGSCTSLEK 473 (581)
Q Consensus 396 ~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~ 473 (581)
+.|+.|.++.|.++. .+-.....++++ ..|++..|.....-......+..|++|||++|++-... -...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 788889999988862 233444567777 78888888533233334445678888888888875221 135667888888
Q ss_pred EECCCCcCccc-Cccc-----ccCCCCCCEEECCCCccccccc--hhhhcCCCCCEEECcCCCCCCC
Q 035922 474 LLMQGNKFYGP-IPSS-----LRSLRGLSVWDFAQNNLSGEIP--KFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 474 L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~ls~n~l~~~~p--~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
|+++.+.+... .|+. ....++|+.|++++|++.. ++ ..+..+++|+.|.+-.|.+...
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhccchhhhhhccccccccc
Confidence 88888887643 2332 3456788888888888853 22 2355567777777777877643
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.8e-10 Score=102.87 Aligned_cols=103 Identities=24% Similarity=0.366 Sum_probs=30.5
Q ss_pred ceeEcCCCcccccCCcccc-CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccc-cCCCCCCEEECC
Q 035922 424 ISLDLSRNHFTGSLPIEVG-NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL-RSLRGLSVWDFA 501 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ls 501 (581)
++|+|.+|.|+ .+. .++ .+.+|+.|++++|.|+ .++ .+..++.|++|++++|+++. +.+.+ ..+++|+.|+++
T Consensus 22 ~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 22 RELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred ccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECc
Confidence 56666666666 232 333 3566666666666666 332 35566666666666666663 33333 346666666666
Q ss_pred CCccccccc-hhhhcCCCCCEEECcCCCCCC
Q 035922 502 QNNLSGEIP-KFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 502 ~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~ 531 (581)
+|+|...-. ..+..+++|++|++.+|+++.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 666643211 345566666666666666654
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=2.7e-10 Score=101.69 Aligned_cols=125 Identities=29% Similarity=0.299 Sum_probs=42.7
Q ss_pred CCCCCcEEECCCCcccccCCcchh-cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc-cCCCCC
Q 035922 394 QCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL-GSCTSL 471 (581)
Q Consensus 394 ~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L 471 (581)
++.++++|++.+|.|. .+. .+. .+.++ +.|++++|.|+ .++ .+..++.|++|++++|+|+ .+...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L-~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKL-EVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT---EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-ccc-chhhhhcCC-CEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 4445666666666665 222 233 34555 66777777766 333 4566777777777777777 344334 357777
Q ss_pred cEEECCCCcCcccC-cccccCCCCCCEEECCCCcccccc---chhhhcCCCCCEEEC
Q 035922 472 EKLLMQGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEI---PKFLAGFKLLENVNL 524 (581)
Q Consensus 472 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~---p~~l~~l~~L~~L~l 524 (581)
++|++++|++...- -..+..+++|+.|++.+|.++..- .-.+..+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 77777777775321 235667788888888888776431 123567788888774
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=5.5e-10 Score=124.15 Aligned_cols=129 Identities=27% Similarity=0.318 Sum_probs=99.0
Q ss_pred CCCCCcEEECCCCC--CCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCC
Q 035922 93 NLSFLRRLHLDNNN--FTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK 170 (581)
Q Consensus 93 ~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (581)
..+.|++|-+..|. +....++.|..++.|++|||++|.=-+.+|..++.+-+||+|+++++.+. .+|..++++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 34478899888886 55455566888999999999988766799999999999999999999998 8899999999999
Q ss_pred EEECCCCcccccCCccCcCCCCCcEEEccCCCC--CCcCCCccCCCCccccccc
Q 035922 171 DLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNI--ARSIPDTLGYLENLSFLSL 222 (581)
Q Consensus 171 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l--~~~~p~~l~~l~~L~~L~l 222 (581)
+|++..+.....+|.....+.+|++|.+..... +...-..+..+.+|+.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999998886656677777799999999866542 2222233344455554444
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.6e-10 Score=120.21 Aligned_cols=243 Identities=25% Similarity=0.241 Sum_probs=159.0
Q ss_pred CCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccc
Q 035922 263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS 342 (581)
Q Consensus 263 l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 342 (581)
+..++.+.+..|.+.+. -..+..+ .++..|++.+|.+..... .+..+++|++|++++|.++...
T Consensus 71 l~~l~~l~l~~n~i~~~------------~~~l~~~-~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~-- 134 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKI------------LNHLSKL-KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE-- 134 (414)
T ss_pred hHhHHhhccchhhhhhh------------hcccccc-cceeeeeccccchhhccc-chhhhhcchheecccccccccc--
Confidence 66666666666655541 1112222 378888888888875422 2667888888888888887543
Q ss_pred cccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCc-ccccCCCCCcEEECCCCcccccCCcchhcccC
Q 035922 343 AIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP-SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSS 421 (581)
Q Consensus 343 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 421 (581)
.+..++.|+.|++++|.++.. ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.. ...+..+..
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~ 209 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKK 209 (414)
T ss_pred chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHH
Confidence 356677788888888888732 245557888888888888875433 2 4677788888888888752 223333444
Q ss_pred CcceeEcCCCcccccCCccccCCCC--CCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEE
Q 035922 422 LSISLDLSRNHFTGSLPIEVGNLKN--LGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499 (581)
Q Consensus 422 L~~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 499 (581)
+ ..+++..|.++..-+ +..+.. |+.+++++|++. .++..+..+..+..|++.+|++... ..+...+.+..+.
T Consensus 210 l-~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~ 283 (414)
T KOG0531|consen 210 L-VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELW 283 (414)
T ss_pred H-HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhc
Confidence 4 455777777763221 222233 788888888887 4446677788888888888888643 2345566677777
Q ss_pred CCCCcccc---ccchh-hhcCCCCCEEECcCCCCCCC
Q 035922 500 FAQNNLSG---EIPKF-LAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 500 ls~n~l~~---~~p~~-l~~l~~L~~L~ls~N~l~~~ 532 (581)
...|.+.. ..... ....+.++.+.+.+|.....
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 284 LNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cCcchhcchhhhhccccccccccccccccccCccccc
Confidence 77777652 12221 45667788888888888765
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=1.6e-09 Score=79.45 Aligned_cols=61 Identities=31% Similarity=0.435 Sum_probs=40.3
Q ss_pred CCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCC
Q 035922 469 TSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529 (581)
Q Consensus 469 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l 529 (581)
++|++|++++|++....++.|..+++|+.|++++|.+....|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566666666666655555666667777777777777666666667777777777776654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=4.8e-10 Score=116.68 Aligned_cols=239 Identities=26% Similarity=0.288 Sum_probs=171.0
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.++.+.+..|.+.. +-..+..+++|+.|++.+|++.+. ...+..+++|++|++++|.|+... .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 67777788888774 223477789999999999999844 333677899999999999998543 35567779999999
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcc-hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ-LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 459 (581)
+|.+... ..+..++.|+.+++++|.+...-+ . ...+.++ ..+++.+|.+.. ...+..+..+..+++..|.++.
T Consensus 149 ~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l-~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 149 GNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISL-EELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccch-HHHhccCCchhc--ccchHHHHHHHHhhccccccee
Confidence 9998843 346668899999999999883333 2 4667777 788999998872 2234445566667888888873
Q ss_pred ccCccccCCCC--CcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC--CC
Q 035922 460 EIPISLGSCTS--LEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY--VP 535 (581)
Q Consensus 460 ~~p~~l~~l~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~--ip 535 (581)
.-+ +..+.. |+.+++++|++. .+++.+..+..+..|++++|++... ..+...+.+..+...+|.+.... ..
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 222 223333 889999999997 4446677888999999999988754 33566677788888888776221 11
Q ss_pred C--ccccCCcCcccccCCCCC
Q 035922 536 T--EGVIKNSSATSVMGNSKL 554 (581)
Q Consensus 536 ~--~~~~~~l~~l~~~gN~~l 554 (581)
. .....+++...+.+||.-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccccccccccccccccCccc
Confidence 1 345566777778887733
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.3e-09 Score=77.19 Aligned_cols=61 Identities=33% Similarity=0.427 Sum_probs=45.5
Q ss_pred CCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcc
Q 035922 445 KNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNL 505 (581)
Q Consensus 445 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l 505 (581)
++|++|++++|+++...+..|..+++|++|++++|.+....|+.|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777755556777778888888888887766667777888888888887764
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.75 E-value=5.1e-10 Score=115.68 Aligned_cols=197 Identities=21% Similarity=0.221 Sum_probs=132.3
Q ss_pred CCCCeEeccCCcccccC-CccCCCCCCCcEEeecCcccCCCCcccccCC-CCCcEEECCCCccc----------ccCCcc
Q 035922 348 QNLRMLGMSGNRFSGNI-PLSVGNLKMLIQLEVSENFLQGTIPSSLCQC-KSLIGINFSKNNLS----------GTIPPQ 415 (581)
Q Consensus 348 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~----------~~~p~~ 415 (581)
++++.|.+-.-.-.+.. |-.+..+.+|++|.+.+|.+... ..+..+ ..|+.|-.. |.+. |.+-..
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence 44444444433322222 66678889999999999987631 111111 133333222 2111 111111
Q ss_pred hhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc-cccCCCC
Q 035922 416 LFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS-SLRSLRG 494 (581)
Q Consensus 416 ~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~ 494 (581)
+ ....| ...+.+.|.+. .+..++.-++.|+.|||++|+++... .+..|+.|+.|||+.|.+. .+|. ....+ .
T Consensus 161 ~-~Wn~L-~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 161 P-VWNKL-ATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-K 233 (1096)
T ss_pred h-hhhhH-hhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-h
Confidence 1 12344 57888999988 67777888899999999999997332 7889999999999999998 4453 23344 4
Q ss_pred CCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC-CCCccccCCcCcccccCCCCCcc
Q 035922 495 LSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY-VPTEGVIKNSSATSVMGNSKLCG 556 (581)
Q Consensus 495 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-ip~~~~~~~l~~l~~~gN~~lcg 556 (581)
|+.|.+++|.++.. -.+.+|.+|+.||++||-|.+.. +-....+..|..+.++|||.-|.
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 99999999999754 45789999999999999888641 11235677888999999997774
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=4e-09 Score=109.19 Aligned_cols=180 Identities=29% Similarity=0.293 Sum_probs=126.9
Q ss_pred cccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccC----------CCCcccccCCCCCcEEECCCCcccc
Q 035922 341 PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQ----------GTIPSSLCQCKSLIGINFSKNNLSG 410 (581)
Q Consensus 341 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~p~~l~~l~~L~~L~ls~n~l~~ 410 (581)
|-.+..+.+|+.|.+.++.+.. .-.-..--..|++|...+ .++ |.+-..+ .-..|...++++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH-
Confidence 5567788999999999998873 111111112344443321 111 1111100 0125778889999987
Q ss_pred cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCc-cccCCCCCcEEECCCCcCcccCcccc
Q 035922 411 TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFYGPIPSSL 489 (581)
Q Consensus 411 ~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l 489 (581)
.+...+.-++.+ +.|||++|+++.. . .+..++.|+.|||++|++. .+|. ....|. |+.|.+++|.++.. ..+
T Consensus 178 ~mD~SLqll~al-e~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPAL-ESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGI 250 (1096)
T ss_pred hHHHHHHHHHHh-hhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhH
Confidence 667777777788 8999999999843 2 6788999999999999998 5554 233455 99999999999743 357
Q ss_pred cCCCCCCEEECCCCccccccc-hhhhcCCCCCEEECcCCCCCC
Q 035922 490 RSLRGLSVWDFAQNNLSGEIP-KFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 490 ~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~ 531 (581)
.++.+|+.||+++|-+.+.-. +.+..|..|+.|+|.+|++-.
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 899999999999998876322 346678899999999999864
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9.6e-09 Score=95.81 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=74.2
Q ss_pred CCcEEEccCCCCCCc-CCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc-cCcccCChhhhcCCCCCcee
Q 035922 192 SIIRLSLTYNNIARS-IPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN-RMQGNIPLDFGFTLPNLQHF 269 (581)
Q Consensus 192 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 269 (581)
.|+++||+...|+.. +...++.+.+|+.|.+.++++.+.+...+.+..+|+.++++.+ .++...-..+...+..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 456666665555422 1123445566666666666666666666666666666666543 23322222233334444444
Q ss_pred eccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc---ccccCchhhcCCCCCCEEEeecC-cCccccccccc
Q 035922 270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK---IFGSIPPGIGKLVNLRRLYVWNN-KLSGTIPSAIG 345 (581)
Q Consensus 270 ~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~~~~l~ 345 (581)
+++.+.+.. ..+...+.+..++|+.|+++++. ....+..-...+++|..|||++| .++......|.
T Consensus 266 NlsWc~l~~----------~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~ 335 (419)
T KOG2120|consen 266 NLSWCFLFT----------EKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 335 (419)
T ss_pred CchHhhccc----------hhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH
Confidence 444332210 01111122233466666666543 11112222345566666666655 33333333444
Q ss_pred CCCCCCeEeccCCc
Q 035922 346 DLQNLRMLGMSGNR 359 (581)
Q Consensus 346 ~l~~L~~L~Ls~n~ 359 (581)
+++.|++|.++.|.
T Consensus 336 kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCY 349 (419)
T ss_pred hcchheeeehhhhc
Confidence 55555555555554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=9.1e-09 Score=95.96 Aligned_cols=58 Identities=26% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCcEEEccCCccccc-CchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922 301 TLASLFLDNNKIFGS-IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 358 (581)
.|+++||++..++.. +...+..|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 466666665555421 2223445555556666555555555555555555555555554
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.25 E-value=4.5e-08 Score=80.97 Aligned_cols=59 Identities=22% Similarity=0.333 Sum_probs=27.5
Q ss_pred CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
.++.|++++|.++ .+|..+..++.|+.|+++.|++. ..|..+..+.++-.||.-.|.+.
T Consensus 78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 4444444444444 44444444455555555555444 33333344444445555444443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.2e-07 Score=88.69 Aligned_cols=85 Identities=20% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCCCCCEEEccCCcCcc--cCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcC-CCccCCCCcc
Q 035922 141 RCSNIILMDLSVNQLLG--NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSI-PDTLGYLENL 217 (581)
Q Consensus 141 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L 217 (581)
.++.++.+||.+|.++. .+-..+.++|.|++|+++.|.+...|-..-....+|++|-|.+..+.-.- ...+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666666552 22223455666666666666555332211123345555555555443211 1223344455
Q ss_pred cccccCCc
Q 035922 218 SFLSLGGN 225 (581)
Q Consensus 218 ~~L~l~~n 225 (581)
++|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=7e-07 Score=82.52 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=17.6
Q ss_pred CCCCcEEECCCCCCCCCCch----hccCCCCCCEEEccC
Q 035922 94 LSFLRRLHLDNNNFTHAIPP----EIGRLRRLRGLTLNN 128 (581)
Q Consensus 94 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~Ls~ 128 (581)
+..+..++||+|.|...-.+ .+.+-++|+..+++.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 44556666666666533222 233445555555544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1.9e-07 Score=77.30 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=37.5
Q ss_pred CCCCeEeccCCcccccCCccC-CCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCccee
Q 035922 348 QNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISL 426 (581)
Q Consensus 348 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L 426 (581)
..|+..+|++|.+. .+|..| ..++.++.+++++|.+. .+|..+..++.|+.|+++.|.+. ..|.-+..+.++ ..|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l-~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL-DML 128 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH-HHh
Confidence 33444444444444 222222 22334444444444444 34444555555555555555554 444444444444 445
Q ss_pred EcCCCccc
Q 035922 427 DLSRNHFT 434 (581)
Q Consensus 427 ~Ls~n~l~ 434 (581)
+..+|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 55555444
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2.1e-05 Score=79.22 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=31.9
Q ss_pred hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382 (581)
Q Consensus 320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 382 (581)
+..+.+++.|++++|.++ .+|. + .++|+.|.++++.-...+|..+ .++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 344567777777777666 4441 1 2357777776643323444433 245666666665
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=1.7e-06 Score=81.15 Aligned_cols=84 Identities=26% Similarity=0.239 Sum_probs=40.0
Q ss_pred CCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCC-CcccccCCCCCc
Q 035922 323 LVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT-IPSSLCQCKSLI 399 (581)
Q Consensus 323 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 399 (581)
++.++.+||.+|.++. .+...+.++|.|+.|+++.|.+...+...-....+|+.|.+.+..+.-. ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4555666666665542 2223344556666666666655533322112344555555555443311 112333445555
Q ss_pred EEECCCC
Q 035922 400 GINFSKN 406 (581)
Q Consensus 400 ~L~ls~n 406 (581)
+|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555555
No 53
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.98 E-value=8.6e-06 Score=54.53 Aligned_cols=37 Identities=51% Similarity=0.921 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHhcCCCCCCCCCCCCCCC--CCCccccCC
Q 035922 44 ETDREALLEFKSKITVDPFGVLGSWNES--SHFCKWHES 80 (581)
Q Consensus 44 ~~~~~~ll~~k~~~~~~~~~~l~~w~~~--~~~c~w~~~ 80 (581)
++|++||++||+++..+|.+.+.+|+.. .++|.|.|.
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV 40 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGV 40 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTE
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccE
Confidence 5799999999999976777899999887 799999873
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.97 E-value=2.1e-06 Score=79.46 Aligned_cols=89 Identities=17% Similarity=0.312 Sum_probs=50.8
Q ss_pred hccCCCCCCEEEccCCCCCCCCc----ccCcCCCCCCEEEccCCcCccc----CC-------cccCCCCCCCEEECCCCc
Q 035922 114 EIGRLRRLRGLTLNNNSIGGEIP----ATMSRCSNIILMDLSVNQLLGN----IP-------PEFGSLSKIKDLRSFMNN 178 (581)
Q Consensus 114 ~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l~~~----~p-------~~l~~l~~L~~L~L~~n~ 178 (581)
.+..+..+..++||+|.|...-. ..+.+-.+|++.+++.-. +|. ++ ..+-+|++|+..+|++|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34457788888888888864322 234455677777776422 221 11 233456666666666666
Q ss_pred ccccCCcc----CcCCCCCcEEEccCCCC
Q 035922 179 LTGSIPSS----LGNLSSIIRLSLTYNNI 203 (581)
Q Consensus 179 l~~~~p~~----l~~l~~L~~L~l~~n~l 203 (581)
+....|+. +++-+.|++|.+++|.+
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 66555443 34445566666666554
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=1.2e-05 Score=53.97 Aligned_cols=36 Identities=33% Similarity=0.528 Sum_probs=15.4
Q ss_pred CCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCc
Q 035922 120 RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLL 156 (581)
Q Consensus 120 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 156 (581)
+|++|++++|+|+ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.85 E-value=6.7e-05 Score=75.62 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=25.7
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 358 (581)
.++.|++++|.++ .+|. -..+|+.|.++++.--..+|..+. ++|++|++++|
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 5666666666554 3331 123466666665422224443331 35666666665
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=2.3e-05 Score=52.56 Aligned_cols=36 Identities=31% Similarity=0.525 Sum_probs=18.2
Q ss_pred CCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922 494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530 (581)
Q Consensus 494 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 530 (581)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.53 E-value=0.00015 Score=64.57 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=52.3
Q ss_pred cEEECCCCCCCCCCchhcc-CCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922 98 RRLHLDNNNFTHAIPPEIG-RLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM 176 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 176 (581)
+.++|.+..+... +.++ -+.+...+||++|.+.. + +.|..+++|.+|.|++|+|+.+-|.--..+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip~i--enlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVI--ENLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccch--hhccccccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 5555655554311 1121 13455667777776652 2 3456666677777777777655444334455666666666
Q ss_pred CcccccCC--ccCcCCCCCcEEEccCCCC
Q 035922 177 NNLTGSIP--SSLGNLSSIIRLSLTYNNI 203 (581)
Q Consensus 177 n~l~~~~p--~~l~~l~~L~~L~l~~n~l 203 (581)
|.+.. +- .-+..+++|++|.+-+|..
T Consensus 98 Nsi~~-l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 98 NSIQE-LGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred cchhh-hhhcchhccCCccceeeecCCch
Confidence 66541 11 1133444455554444444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00017 Score=64.33 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=85.2
Q ss_pred ceeEcCCCcccccCCcccc-CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCC
Q 035922 424 ISLDLSRNHFTGSLPIEVG-NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQ 502 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 502 (581)
+.+++.+.++. .+.. ++ -......+||++|.+. .+ ..|.+++.|.+|.|++|+|+.+-|.--.-+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip-~ien-lg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIEN-LGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-chhh-ccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 46677776655 1211 11 2346678999999886 22 3577888999999999999977776556678899999999
Q ss_pred Cccccccc-hhhhcCCCCCEEECcCCCCCCCCCC----CccccCCcCcccccC
Q 035922 503 NNLSGEIP-KFLAGFKLLENVNLSYNDLGARYVP----TEGVIKNSSATSVMG 550 (581)
Q Consensus 503 n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~ip----~~~~~~~l~~l~~~g 550 (581)
|+|...-. +-+..+|.|++|.+-+|+.+.. -- ..-.+++++.+||.+
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcc-cCceeEEEEecCcceEeehhh
Confidence 98864211 3477889999999999988764 11 113467788888775
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=3.9e-05 Score=83.77 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=79.4
Q ss_pred CCCcEEECCCCCCC-CCCchhcc-CCCCCCEEEccCCCCCCC-CcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922 95 SFLRRLHLDNNNFT-HAIPPEIG-RLRRLRGLTLNNNSIGGE-IPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD 171 (581)
Q Consensus 95 ~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (581)
.+|++||+++...- ..-|..++ .||.|+.|.+++-.+... .-....++++|+.||+|+++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46777888775432 12222333 477888888877665422 223345677888888888777633 56777777777
Q ss_pred EECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcC--C----CccCCCCcccccccCCccCCCC
Q 035922 172 LRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSI--P----DTLGYLENLSFLSLGGNMLSGT 230 (581)
Q Consensus 172 L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~--p----~~l~~l~~L~~L~l~~n~l~~~ 230 (581)
|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7776655542 22234667778888888766543221 1 1112356666666666665543
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=2.2e-05 Score=85.76 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=46.5
Q ss_pred CCCCEEEccCCCC-CCCCcccCc-CCCCCCEEEccCCcCcc-cCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922 119 RRLRGLTLNNNSI-GGEIPATMS-RCSNIILMDLSVNQLLG-NIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR 195 (581)
Q Consensus 119 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 195 (581)
.+|++||+++... ....|..++ .+|+|+.|.+++-.+.. ..-....++++|..||+++++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3555566655422 222222222 25555555555544321 1112234455555555555555422 34455555555
Q ss_pred EEccCCCCCC-cCCCccCCCCcccccccCCcc
Q 035922 196 LSLTYNNIAR-SIPDTLGYLENLSFLSLGGNM 226 (581)
Q Consensus 196 L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~ 226 (581)
|.+.+=.+.. ..-..+.+|++|+.||+|...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 5554443322 111123345555555555443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.14 E-value=0.0002 Score=66.61 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=52.6
Q ss_pred cCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCC--CCCCCCcccCcCCCCCCEEEccCCcCccc-CCccc
Q 035922 87 ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNN--SIGGEIPATMSRCSNIILMDLSVNQLLGN-IPPEF 163 (581)
Q Consensus 87 i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l 163 (581)
+......+..|+.|++.+..++.. ..+..+++|+.|.++.| .+++.++-....+++|++|++++|++... --..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 333344455666666666665522 23456677788888877 55555555555667777777777776520 00123
Q ss_pred CCCCCCCEEECCCCccc
Q 035922 164 GSLSKIKDLRSFMNNLT 180 (581)
Q Consensus 164 ~~l~~L~~L~L~~n~l~ 180 (581)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 44555566666665544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.10 E-value=0.0018 Score=55.20 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=43.7
Q ss_pred cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922 90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI 169 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (581)
.+.+.++|+.+.+.. .+...-...|.++++|+.+++..+ +......+|..+++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555666666653 344344445666666666666553 4433344555665666666654 3332333345556666
Q ss_pred CEEECCCCcccccCCccCcCCCCCcEEEcc
Q 035922 170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLT 199 (581)
Q Consensus 170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 199 (581)
+.+++..+ +...-...+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 66665443 332223334444 55555544
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.04 E-value=3.6e-05 Score=75.77 Aligned_cols=236 Identities=18% Similarity=0.107 Sum_probs=129.0
Q ss_pred hhhhcccCCcEEEccCCc-ccccCch-hhcCCCCCCEEEeecC-cCcccc-cccccCCCCCCeEeccCCccccc--CCcc
Q 035922 294 CISNFSTTLASLFLDNNK-IFGSIPP-GIGKLVNLRRLYVWNN-KLSGTI-PSAIGDLQNLRMLGMSGNRFSGN--IPLS 367 (581)
Q Consensus 294 ~~~~~~~~L~~L~L~~n~-l~~~~p~-~l~~l~~L~~L~L~~n-~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~--~~~~ 367 (581)
.+..+.++|++|++..|. ++...-. ....+++|++|+++++ ++++.- -....++..++.+.+.+|.-.+. +-..
T Consensus 184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~ 263 (483)
T KOG4341|consen 184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA 263 (483)
T ss_pred HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH
Confidence 344444567777776643 3322212 2346788888888887 344321 12234566677776666532110 0001
Q ss_pred CCCCCCCcEEeecCcc-cCCCCc-ccccCCCCCcEEECCCCcccccC-Ccchh-cccCCcceeEcCCCcc-cccCCccc-
Q 035922 368 VGNLKMLIQLEVSENF-LQGTIP-SSLCQCKSLIGINFSKNNLSGTI-PPQLF-GLSSLSISLDLSRNHF-TGSLPIEV- 441 (581)
Q Consensus 368 ~~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~-p~~~~-~l~~L~~~L~Ls~n~l-~~~~p~~l- 441 (581)
-+.+..+..+++..|. ++...- ..-..+..|++++.+++.-.+.. -..++ +..++ +.+-++.++. +..-...+
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L-~~l~l~~c~~fsd~~ft~l~ 342 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL-QVLELSGCQQFSDRGFTMLG 342 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce-EEEeccccchhhhhhhhhhh
Confidence 1234455666665553 332211 11124667788887776542222 12222 33455 7777777753 21111122
Q ss_pred cCCCCCCeeeccCCcCc--cccCccccCCCCCcEEECCCCcCcccC-----cccccCCCCCCEEECCCCccc-cccchhh
Q 035922 442 GNLKNLGVLDISGNLLS--GEIPISLGSCTSLEKLLMQGNKFYGPI-----PSSLRSLRGLSVWDFAQNNLS-GEIPKFL 513 (581)
Q Consensus 442 ~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~ls~n~l~-~~~p~~l 513 (581)
.+.+.|+.+++..+... +.+...=.+++.|+.|.+++|...... ...-..+..|+.+.++++... ...-+.+
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 35678888888887543 112222247888999999888653221 122245677888899888754 3444567
Q ss_pred hcCCCCCEEECcCCCCC
Q 035922 514 AGFKLLENVNLSYNDLG 530 (581)
Q Consensus 514 ~~l~~L~~L~ls~N~l~ 530 (581)
..++.|+.+++-+++-.
T Consensus 423 ~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDV 439 (483)
T ss_pred hhCcccceeeeechhhh
Confidence 78888888888877543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.95 E-value=0.0023 Score=54.53 Aligned_cols=106 Identities=15% Similarity=0.194 Sum_probs=48.3
Q ss_pred hccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCC
Q 035922 114 EIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI 193 (581)
Q Consensus 114 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 193 (581)
.|.++++|+.+.+.. .+...-..+|..+++|+.+++..+ +.......|.++++++.+.+.+ .+.......+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466667777777764 455444556667767777777664 4434444566666677776654 3332233345556666
Q ss_pred cEEEccCCCCCCcCCCccCCCCcccccccCC
Q 035922 194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGG 224 (581)
Q Consensus 194 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 224 (581)
+.+++..+ +.......|.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66666543 333333444444 555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00042 Score=64.49 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=54.0
Q ss_pred CchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCC--cCcccCCcccCCCCCCCEEECCCCcccccCCcc--
Q 035922 111 IPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVN--QLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSS-- 186 (581)
Q Consensus 111 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-- 186 (581)
+..-...+..|+.|++.+..++.. ..+-.+++|++|.+|.| ++.+-++--...+++|+++++++|++.- ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 333344556666666666666522 24556777888888887 5554444444555777777777777652 222
Q ss_pred -CcCCCCCcEEEccCCCCCC
Q 035922 187 -LGNLSSIIRLSLTYNNIAR 205 (581)
Q Consensus 187 -l~~l~~L~~L~l~~n~l~~ 205 (581)
+..+.+|..|++.+|..+.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcchhhhhcccCCccc
Confidence 3445556666666665543
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.09 E-value=0.00022 Score=70.38 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=15.4
Q ss_pred CCcEEECCCCCCCCC--CchhccCCCCCCEEEccCC
Q 035922 96 FLRRLHLDNNNFTHA--IPPEIGRLRRLRGLTLNNN 129 (581)
Q Consensus 96 ~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n 129 (581)
.|+.|.+.++.-.+. +-..-.+++++++|++.++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc 174 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGC 174 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcc
Confidence 455555555432221 1112234555555555555
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.00021 Score=66.81 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCC-cccCCCCCCCEE
Q 035922 94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIP-PEFGSLSKIKDL 172 (581)
Q Consensus 94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L 172 (581)
+.+.+.|+.-+++++++ ....+++.|++|.||-|+|+.. ..+..|++|++|+|..|.|...-. ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556677777777643 2345778888888888888743 346777888888888887753211 235677777777
Q ss_pred ECCCCcccccCCcc-----CcCCCCCcEEE
Q 035922 173 RSFMNNLTGSIPSS-----LGNLSSIIRLS 197 (581)
Q Consensus 173 ~L~~n~l~~~~p~~-----l~~l~~L~~L~ 197 (581)
.|..|.-.|.-+.. +.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777655544322 33455555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.00031 Score=65.63 Aligned_cols=21 Identities=33% Similarity=0.274 Sum_probs=10.8
Q ss_pred cCCCCcccccccCCccCCCCC
Q 035922 211 LGYLENLSFLSLGGNMLSGTI 231 (581)
Q Consensus 211 l~~l~~L~~L~l~~n~l~~~~ 231 (581)
+.++++|+.|.|..|.-.|.-
T Consensus 84 LknlpsLr~LWL~ENPCc~~a 104 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEA 104 (388)
T ss_pred HhcCchhhhHhhccCCccccc
Confidence 345555555555555544433
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.44 E-value=0.002 Score=68.66 Aligned_cols=63 Identities=21% Similarity=0.161 Sum_probs=28.2
Q ss_pred CCCCCCeEeccCCc-ccccCCccCC-CCCCCcEEeecCcc-cCCC-CcccccCCCCCcEEECCCCcc
Q 035922 346 DLQNLRMLGMSGNR-FSGNIPLSVG-NLKMLIQLEVSENF-LQGT-IPSSLCQCKSLIGINFSKNNL 408 (581)
Q Consensus 346 ~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~ls~n~l 408 (581)
.+++|+.|+++++. ++...-..+. .+++|+.|.+.+|. ++.. +-.....++.|++|++++|..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 44555566665555 3322111122 25556666555554 3322 111223355566666665543
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.40 E-value=0.0001 Score=77.13 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=17.2
Q ss_pred CcEEEccCCcccccCc----hhhcCCCCCCEEEeecCcCc
Q 035922 302 LASLFLDNNKIFGSIP----PGIGKLVNLRRLYVWNNKLS 337 (581)
Q Consensus 302 L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~ 337 (581)
+..+.+.+|.+..... ..+...+.|+.|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5556666665553321 22333445555555555444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.27 E-value=0.0091 Score=33.21 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=8.7
Q ss_pred CCEEECCCCccccccchhh
Q 035922 495 LSVWDFAQNNLSGEIPKFL 513 (581)
Q Consensus 495 L~~L~ls~n~l~~~~p~~l 513 (581)
|+.||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555554 444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.24 E-value=0.0088 Score=33.26 Aligned_cols=12 Identities=42% Similarity=0.493 Sum_probs=5.6
Q ss_pred CCEEEccCCcCc
Q 035922 145 IILMDLSVNQLL 156 (581)
Q Consensus 145 L~~L~Ls~n~l~ 156 (581)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.63 E-value=0.0047 Score=65.81 Aligned_cols=131 Identities=23% Similarity=0.131 Sum_probs=75.5
Q ss_pred CCCCCCEEEeecCcCccc--ccccccCCCCCCeEeccCC-cccccC----CccCCCCCCCcEEeecCcc-cCCCCccccc
Q 035922 322 KLVNLRRLYVWNNKLSGT--IPSAIGDLQNLRMLGMSGN-RFSGNI----PLSVGNLKMLIQLEVSENF-LQGTIPSSLC 393 (581)
Q Consensus 322 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~ 393 (581)
.++.|+.+.+..+.-... +-.....++.|+.|+++++ ...... ......+++|+.++++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 357777777776633222 2234456778888888763 211111 1233457899999999988 5544333333
Q ss_pred C-CCCCcEEECCCCc-ccccCC-cchhcccCCcceeEcCCCccccc--CCccccCCCCCCeeecc
Q 035922 394 Q-CKSLIGINFSKNN-LSGTIP-PQLFGLSSLSISLDLSRNHFTGS--LPIEVGNLKNLGVLDIS 453 (581)
Q Consensus 394 ~-l~~L~~L~ls~n~-l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls 453 (581)
. |++|++|.+.+|. ++..-- .....++.| ++|+++.+..... +.....++++++.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L-~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSL-RELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcc-cEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 3 8899999988777 443322 233445667 8899998865311 22223345555554433
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.10 E-value=0.00032 Score=73.39 Aligned_cols=181 Identities=24% Similarity=0.245 Sum_probs=105.6
Q ss_pred cCCcEEEccCCcccccCch----hhcCC-CCCCEEEeecCcCccc----ccccccCCCCCCeEeccCCcccc----cCCc
Q 035922 300 TTLASLFLDNNKIFGSIPP----GIGKL-VNLRRLYVWNNKLSGT----IPSAIGDLQNLRMLGMSGNRFSG----NIPL 366 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~----~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~----~~~~ 366 (581)
..|..|++++|.+.+.--. .+... ..+++|++..|.+++. +...+...+.++.++++.|.+.. .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 4789999999998743222 22232 5677888888887643 45566678899999999998742 1122
Q ss_pred c----CCCCCCCcEEeecCcccCCC----CcccccCCCC-CcEEECCCCccccc----CCcchhcc-cCCcceeEcCCCc
Q 035922 367 S----VGNLKMLIQLEVSENFLQGT----IPSSLCQCKS-LIGINFSKNNLSGT----IPPQLFGL-SSLSISLDLSRNH 432 (581)
Q Consensus 367 ~----~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~-L~~L~ls~n~l~~~----~p~~~~~l-~~L~~~L~Ls~n~ 432 (581)
. +....++++|.+++|.++.. +...+...+. +.++++..|.+.+. +...+..+ ..+ +.++++.|.
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l-~~l~l~~ns 273 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETL-RVLDLSRNS 273 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhh-hhhhhhcCC
Confidence 2 22456778888888776622 1122333444 56677777776533 12223333 334 567777777
Q ss_pred cccc----CCccccCCCCCCeeeccCCcCccccC----ccccCCCCCcEEECCCCcC
Q 035922 433 FTGS----LPIEVGNLKNLGVLDISGNLLSGEIP----ISLGSCTSLEKLLMQGNKF 481 (581)
Q Consensus 433 l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~Ls~n~l 481 (581)
|+.. +...+..++.++++.++.|.+...-. ..+.....+..+.+.++..
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc
Confidence 7643 33344556677777777777653221 1222334444555554443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.59 E-value=0.0021 Score=58.72 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=40.9
Q ss_pred ccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCc
Q 035922 115 IGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSII 194 (581)
Q Consensus 115 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 194 (581)
+....+...||++.|++. ..-..|+.++.|..||++.|.+. -.|..++....++++++..|..+ ..|.+++..++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334444455555555443 22333444445555555555444 34444555555555555544444 4454555555555
Q ss_pred EEEccCCCC
Q 035922 195 RLSLTYNNI 203 (581)
Q Consensus 195 ~L~l~~n~l 203 (581)
++++-.|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 554444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.65 E-value=0.0063 Score=55.67 Aligned_cols=79 Identities=20% Similarity=0.162 Sum_probs=34.0
Q ss_pred ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922 424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 503 (581)
+.||++.|++. ..-..+..++.+..||++.|++. ..|..++....++.+++..|..+ ..|.++...+.++.+++-.|
T Consensus 45 tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 45 TVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccC
Confidence 34444444443 22223333344444444444444 44444444444444444444443 33444444444444444444
Q ss_pred cc
Q 035922 504 NL 505 (581)
Q Consensus 504 ~l 505 (581)
.+
T Consensus 122 ~~ 123 (326)
T KOG0473|consen 122 EF 123 (326)
T ss_pred cc
Confidence 43
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.33 E-value=0.19 Score=25.85 Aligned_cols=10 Identities=40% Similarity=0.531 Sum_probs=3.2
Q ss_pred CCEEEccCCc
Q 035922 145 IILMDLSVNQ 154 (581)
Q Consensus 145 L~~L~Ls~n~ 154 (581)
|++|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3344444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.35 E-value=0.52 Score=27.19 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=5.8
Q ss_pred CCCEEECCCCccc
Q 035922 494 GLSVWDFAQNNLS 506 (581)
Q Consensus 494 ~L~~L~ls~n~l~ 506 (581)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.35 E-value=0.52 Score=27.19 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=5.8
Q ss_pred CCCEEECCCCccc
Q 035922 494 GLSVWDFAQNNLS 506 (581)
Q Consensus 494 ~L~~L~ls~n~l~ 506 (581)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.26 E-value=0.25 Score=27.91 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=7.0
Q ss_pred CCCCEEECCCCccccc
Q 035922 493 RGLSVWDFAQNNLSGE 508 (581)
Q Consensus 493 ~~L~~L~ls~n~l~~~ 508 (581)
++|+.|++++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=0.12 Score=46.72 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=34.4
Q ss_pred CeeeccCCcCccccCccccCCCCCcEEECCCCcCccc-Cccccc-CCCCCCEEECCCC-ccccccchhhhcCCCCCEEEC
Q 035922 448 GVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGP-IPSSLR-SLRGLSVWDFAQN-NLSGEIPKFLAGFKLLENVNL 524 (581)
Q Consensus 448 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~-~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~l 524 (581)
+.+|-++..|..+--+.+..+++++.|.+.+|.-.+. --+-++ -.++|+.|+++.| +|+..--..+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 3444444444433333444444444444444432211 001111 2345666666655 344433344555555555555
Q ss_pred cC
Q 035922 525 SY 526 (581)
Q Consensus 525 s~ 526 (581)
.+
T Consensus 184 ~~ 185 (221)
T KOG3864|consen 184 YD 185 (221)
T ss_pred cC
Confidence 43
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.00 E-value=0.83 Score=26.30 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=5.3
Q ss_pred CCCEEEccCCCCC
Q 035922 120 RLRGLTLNNNSIG 132 (581)
Q Consensus 120 ~L~~L~Ls~n~l~ 132 (581)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.00 E-value=0.83 Score=26.30 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=5.3
Q ss_pred CCCEEEccCCCCC
Q 035922 120 RLRGLTLNNNSIG 132 (581)
Q Consensus 120 ~L~~L~Ls~n~l~ 132 (581)
+|++|+|++|.++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.00 E-value=0.14 Score=46.18 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=19.9
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCc
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK 335 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 335 (581)
.++.++-++..+...--..+..++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45566666666555444445555666666665553
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.68 E-value=2.2 Score=44.59 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=36.4
Q ss_pred CCCCCcEEECCCCcCcccC--cccccCCCCCCEEECCCC--ccccccchhhh--cCCCCCEEECcCCCCCCC
Q 035922 467 SCTSLEKLLMQGNKFYGPI--PSSLRSLRGLSVWDFAQN--NLSGEIPKFLA--GFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~ls~n--~l~~~~p~~l~--~l~~L~~L~ls~N~l~~~ 532 (581)
+.+.+..++|++|++...- ...-...|.|+.|+|++| .+... .++. +...|++|-+.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4567777888888875321 111133467788888887 33321 2222 223466777777777654
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.82 E-value=3.1 Score=24.08 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=13.1
Q ss_pred CCCCEEECcCCCCCCCCCCC
Q 035922 517 KLLENVNLSYNDLGARYVPT 536 (581)
Q Consensus 517 ~~L~~L~ls~N~l~~~~ip~ 536 (581)
++|+.|++++|+++. +|+
T Consensus 2 ~~L~~L~vs~N~Lt~--LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS--LPE 19 (26)
T ss_pred cccceeecCCCcccc--Ccc
Confidence 357788888888865 565
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.61 E-value=6.2 Score=22.87 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=6.5
Q ss_pred CCCCEEEccCCCCC
Q 035922 119 RRLRGLTLNNNSIG 132 (581)
Q Consensus 119 ~~L~~L~Ls~n~l~ 132 (581)
.+|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34444444444443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=63.04 E-value=6.3 Score=23.17 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=10.8
Q ss_pred CCCCEEECcCCCCC
Q 035922 517 KLLENVNLSYNDLG 530 (581)
Q Consensus 517 ~~L~~L~ls~N~l~ 530 (581)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888875
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.87 E-value=56 Score=33.95 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=6.5
Q ss_pred CCCCEEECCCCcc
Q 035922 493 RGLSVWDFAQNNL 505 (581)
Q Consensus 493 ~~L~~L~ls~n~l 505 (581)
+.++.||+++|..
T Consensus 440 qtl~kldisgn~m 452 (553)
T KOG4242|consen 440 QTLAKLDISGNGM 452 (553)
T ss_pred cccccccccCCCc
Confidence 4455555555544
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.30 E-value=19 Score=37.96 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=48.4
Q ss_pred CCCCCCeeeccCCcCccc--cCccccCCCCCcEEECCCC--cCcccCcccccC--CCCCCEEECCCCccccccc---hhh
Q 035922 443 NLKNLGVLDISGNLLSGE--IPISLGSCTSLEKLLMQGN--KFYGPIPSSLRS--LRGLSVWDFAQNNLSGEIP---KFL 513 (581)
Q Consensus 443 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~--l~~L~~L~ls~n~l~~~~p---~~l 513 (581)
+.+.+..+.|++|++... +..--...|.|..|+|++| .+.. ..++.. ...|+.|-+.+|.+....- +.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 457788899999987521 1111234588999999999 3331 122222 2358899999998875322 111
Q ss_pred ----hcCCCCCEEE
Q 035922 514 ----AGFKLLENVN 523 (581)
Q Consensus 514 ----~~l~~L~~L~ 523 (581)
..+|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 2467776654
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.54 E-value=32 Score=19.57 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=5.7
Q ss_pred CCCCEEECCCC
Q 035922 493 RGLSVWDFAQN 503 (581)
Q Consensus 493 ~~L~~L~ls~n 503 (581)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.92 E-value=35 Score=43.41 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.3
Q ss_pred ECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 475 LMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 475 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
||++|+|....+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889988666678888889999999998774
Done!