Query 035922
Match_columns 581
No_of_seqs 520 out of 4482
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.6E-72 3.3E-76 625.3 43.2 519 40-568 7-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.1E-59 2.1E-63 521.6 36.9 480 73-560 29-722 (768)
3 3t6q_A CD180 antigen; protein- 100.0 1.8E-54 6E-59 474.2 40.1 455 96-557 34-563 (606)
4 4eco_A Uncharacterized protein 100.0 4.5E-55 1.5E-59 479.4 24.8 479 42-557 27-603 (636)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-52 6.1E-57 464.5 41.6 472 83-558 37-626 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1E-52 3.5E-57 460.2 37.6 462 85-557 46-561 (606)
7 3t6q_A CD180 antigen; protein- 100.0 5E-52 1.7E-56 454.7 39.6 451 81-536 43-565 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-50 1.2E-54 446.0 46.5 461 86-552 18-571 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-51 2E-55 446.4 37.1 455 86-554 25-534 (606)
10 4ecn_A Leucine-rich repeat pro 100.0 2.2E-52 7.7E-57 465.7 25.5 480 40-555 264-865 (876)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-51 8.3E-56 464.6 32.3 461 84-557 37-563 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 5E-50 1.7E-54 435.7 36.8 450 95-557 28-534 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2E-49 6.8E-54 429.0 31.2 468 74-557 3-513 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 1.6E-48 5.5E-53 423.9 32.0 464 82-558 39-560 (570)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-47 4.2E-52 434.3 35.7 456 93-559 22-543 (844)
16 4eco_A Uncharacterized protein 100.0 9.1E-50 3.1E-54 437.3 17.0 425 80-532 90-602 (636)
17 2z7x_B TOLL-like receptor 1, v 100.0 2E-47 6.8E-52 410.5 29.1 448 86-557 14-484 (520)
18 2z7x_B TOLL-like receptor 1, v 100.0 8.2E-47 2.8E-51 405.7 29.2 427 82-535 32-485 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 4.3E-47 1.5E-51 423.2 25.9 425 80-531 332-865 (876)
20 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-46 8.1E-51 404.9 29.9 441 81-536 36-515 (549)
21 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-45 1.6E-49 401.6 36.1 460 86-557 45-583 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.9E-44 2.7E-48 385.8 31.5 443 87-556 46-512 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.9E-44 2.4E-48 386.2 28.7 428 81-536 62-515 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 2.3E-43 7.7E-48 372.4 28.0 375 95-538 30-415 (455)
25 4g8a_A TOLL-like receptor 4; l 100.0 8.2E-42 2.8E-46 375.7 36.3 441 83-532 64-582 (635)
26 3v47_A TOLL-like receptor 5B a 100.0 9.7E-42 3.3E-46 359.9 28.9 389 98-558 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.7E-41 2E-45 352.0 25.5 394 90-555 6-430 (454)
28 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-40 7.4E-45 331.2 18.5 188 41-236 2-195 (313)
29 1jl5_A Outer protein YOPM; leu 100.0 2.6E-39 8.9E-44 339.4 24.5 379 85-535 24-433 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2E-38 6.7E-43 333.0 26.2 358 88-536 35-392 (457)
31 2id5_A Lingo-1, leucine rich r 100.0 2.3E-38 7.8E-43 336.1 26.9 319 122-506 14-333 (477)
32 1o6v_A Internalin A; bacterial 100.0 1.6E-37 5.5E-42 328.3 32.5 345 93-506 44-388 (466)
33 1o6v_A Internalin A; bacterial 100.0 1.8E-37 6.3E-42 327.9 31.9 348 116-532 43-390 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-37 1.5E-41 322.8 27.9 356 106-560 29-392 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 1.2E-36 4.3E-41 322.8 30.1 320 98-482 14-333 (477)
36 3oja_B Anopheles plasmodium-re 100.0 4.3E-37 1.5E-41 334.9 26.9 337 94-560 50-386 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 1.2E-36 4.1E-41 314.2 26.1 334 94-557 44-377 (390)
38 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-37 9.5E-42 308.7 20.1 254 301-558 51-308 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 2.1E-34 7.3E-39 297.4 26.5 313 117-557 43-355 (390)
40 4fmz_A Internalin; leucine ric 100.0 7.6E-34 2.6E-38 288.5 28.9 307 91-530 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.2E-33 4.2E-38 307.6 26.2 311 142-557 50-361 (597)
42 4fmz_A Internalin; leucine ric 100.0 5.1E-33 1.7E-37 282.4 29.0 284 90-456 61-344 (347)
43 4fcg_A Uncharacterized protein 100.0 2.2E-34 7.5E-39 289.4 12.7 190 39-249 21-216 (328)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-36 5.2E-41 320.7 -4.3 384 95-530 3-440 (461)
45 1z7x_W Ribonuclease inhibitor; 100.0 8.5E-36 2.9E-40 315.0 -0.5 378 119-553 3-439 (461)
46 1xku_A Decorin; proteoglycan, 100.0 1.5E-31 5.2E-36 269.5 29.4 204 301-527 122-329 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.6E-32 1.2E-36 274.3 24.5 294 96-456 34-331 (332)
48 2ft3_A Biglycan; proteoglycan, 100.0 1E-31 3.5E-36 271.0 27.3 152 301-458 124-277 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1.6E-31 5.4E-36 269.4 28.2 250 96-392 32-283 (330)
50 3ogk_B Coronatine-insensitive 100.0 2.6E-33 9E-38 305.5 -4.2 408 88-532 66-528 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 1.7E-29 5.7E-34 257.0 20.0 276 70-386 25-315 (353)
52 4fcg_A Uncharacterized protein 100.0 1.6E-29 5.6E-34 253.9 19.6 226 300-531 81-315 (328)
53 2z66_A Variable lymphocyte rec 100.0 2E-29 6.8E-34 251.2 18.9 257 300-559 28-292 (306)
54 3ogk_B Coronatine-insensitive 100.0 3.9E-32 1.3E-36 296.2 -3.0 405 110-555 64-526 (592)
55 1ozn_A Reticulon 4 receptor; N 100.0 8.5E-29 2.9E-33 244.0 19.4 252 303-559 14-266 (285)
56 3zyj_A Leucine-rich repeat-con 100.0 4.2E-28 1.4E-32 254.2 24.0 237 290-532 57-294 (440)
57 2z66_A Variable lymphocyte rec 100.0 1.6E-28 5.3E-33 244.7 19.7 250 302-557 9-264 (306)
58 3zyi_A Leucine-rich repeat-con 100.0 5.7E-28 2E-32 254.1 24.8 236 291-532 69-305 (452)
59 2z80_A TOLL-like receptor 2, v 100.0 9E-29 3.1E-33 251.6 16.4 252 301-555 53-315 (353)
60 3g06_A SSPH2 (leucine-rich rep 100.0 2.5E-28 8.7E-33 263.7 19.1 146 62-228 9-154 (622)
61 3zyj_A Leucine-rich repeat-con 100.0 1.9E-27 6.4E-32 249.3 24.8 211 292-506 81-292 (440)
62 3zyi_A Leucine-rich repeat-con 100.0 1.9E-27 6.6E-32 250.1 23.9 247 303-556 57-305 (452)
63 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-27 4E-32 235.8 19.3 248 300-550 32-283 (285)
64 1wwl_A Monocyte differentiatio 100.0 9.1E-29 3.1E-33 246.9 8.8 232 290-531 56-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.6E-28 8.9E-33 244.2 11.2 261 279-556 14-277 (317)
66 1wwl_A Monocyte differentiatio 99.9 7.4E-29 2.5E-33 247.6 7.0 243 300-553 43-308 (312)
67 3oja_A Leucine-rich immune mol 99.9 1.2E-27 4.3E-32 253.1 14.7 243 300-558 34-286 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 9.8E-26 3.3E-30 243.5 27.4 269 119-517 40-308 (622)
69 2p1m_B Transport inhibitor res 99.9 6.6E-30 2.3E-34 278.7 -5.6 423 90-530 61-544 (594)
70 2p1m_B Transport inhibitor res 99.9 2.1E-29 7.2E-34 274.7 -4.8 422 98-531 46-520 (594)
71 3o53_A Protein LRIM1, AGAP0063 99.9 5.5E-27 1.9E-31 234.5 13.0 242 301-558 11-254 (317)
72 3oja_A Leucine-rich immune mol 99.9 6.4E-27 2.2E-31 247.6 12.9 223 322-559 32-255 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 2.3E-25 8E-30 218.2 19.7 227 305-537 12-243 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.3E-24 4.5E-29 212.9 19.2 209 300-510 28-241 (276)
75 1p9a_G Platelet glycoprotein I 99.9 2.2E-24 7.4E-29 212.5 20.2 205 320-532 6-210 (290)
76 2o6q_A Variable lymphocyte rec 99.9 8.7E-24 3E-28 206.3 22.1 204 301-532 17-220 (270)
77 2o6q_A Variable lymphocyte rec 99.9 1.3E-23 4.3E-28 205.1 21.9 204 349-557 17-221 (270)
78 1p9a_G Platelet glycoprotein I 99.9 1.3E-23 4.4E-28 206.9 19.5 200 300-507 10-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 8.7E-24 3E-28 206.5 16.6 203 321-536 38-240 (272)
80 4glp_A Monocyte differentiatio 99.9 4.1E-24 1.4E-28 213.0 14.2 223 301-531 65-308 (310)
81 3rfs_A Internalin B, repeat mo 99.9 2.1E-24 7.1E-29 210.9 11.8 205 301-517 42-246 (272)
82 3goz_A Leucine-rich repeat-con 99.9 3.6E-25 1.2E-29 225.6 6.0 251 280-532 3-299 (362)
83 2ca6_A RAN GTPase-activating p 99.9 5.3E-25 1.8E-29 226.6 6.8 240 291-532 24-318 (386)
84 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.8E-28 209.9 13.3 224 324-554 64-307 (310)
85 2ast_B S-phase kinase-associat 99.9 4.3E-24 1.5E-28 215.5 8.2 226 301-532 71-308 (336)
86 2ca6_A RAN GTPase-activating p 99.9 7.9E-25 2.7E-29 225.3 1.8 206 321-527 91-340 (386)
87 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.8E-28 212.5 9.8 250 301-560 48-311 (336)
88 3goz_A Leucine-rich repeat-con 99.9 2.6E-24 9E-29 219.3 5.2 259 99-413 2-301 (362)
89 2xwt_C Thyrotropin receptor; s 99.9 6.2E-23 2.1E-27 196.4 13.7 201 324-552 31-237 (239)
90 2xwt_C Thyrotropin receptor; s 99.9 1.1E-22 3.8E-27 194.6 15.1 203 290-527 25-236 (239)
91 3m19_A Variable lymphocyte rec 99.9 7.1E-22 2.4E-26 190.5 19.1 159 373-532 36-194 (251)
92 1h6u_A Internalin H; cell adhe 99.9 4.3E-22 1.5E-26 198.0 17.0 190 301-531 42-231 (308)
93 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.4E-26 187.5 18.2 159 349-508 36-194 (251)
94 1h6u_A Internalin H; cell adhe 99.9 5.6E-21 1.9E-25 189.9 19.9 206 245-482 25-230 (308)
95 4ay9_X Follicle-stimulating ho 99.9 6.2E-21 2.1E-25 193.3 15.9 235 283-527 17-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 3.5E-20 1.2E-24 187.8 19.0 243 242-507 12-260 (350)
97 3cvr_A Invasion plasmid antige 99.8 3E-20 1E-24 198.2 18.1 189 301-518 60-255 (571)
98 2o6s_A Variable lymphocyte rec 99.8 2.8E-20 9.7E-25 173.8 15.8 157 94-257 27-183 (208)
99 2o6s_A Variable lymphocyte rec 99.8 2.4E-20 8.2E-25 174.3 14.6 180 303-517 10-189 (208)
100 3cvr_A Invasion plasmid antige 99.8 5.2E-20 1.8E-24 196.4 17.2 183 324-536 59-248 (571)
101 3e6j_A Variable lymphocyte rec 99.8 1.4E-19 4.6E-24 171.7 17.2 163 66-231 10-175 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 6.2E-20 2.1E-24 172.9 12.9 179 375-559 14-194 (220)
103 2v9t_B SLIT homolog 2 protein 99.8 4.5E-19 1.5E-23 167.0 15.0 154 375-532 14-167 (220)
104 1h6t_A Internalin B; cell adhe 99.8 4.1E-19 1.4E-23 174.9 14.9 189 302-507 26-214 (291)
105 2v9t_B SLIT homolog 2 protein 99.8 2.7E-19 9.4E-24 168.5 12.8 153 351-507 14-166 (220)
106 2xot_A Amphoterin-induced prot 99.8 3.5E-19 1.2E-23 181.1 13.4 178 351-532 21-204 (361)
107 1h6t_A Internalin B; cell adhe 99.8 4.5E-19 1.5E-23 174.5 13.1 167 301-482 47-213 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6E-23 162.9 16.1 157 98-257 14-171 (220)
109 2xot_A Amphoterin-induced prot 99.8 9.4E-19 3.2E-23 178.0 15.0 178 326-507 20-203 (361)
110 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.7E-23 188.3 16.0 191 301-508 22-212 (605)
111 1m9s_A Internalin B; cell inva 99.8 1.9E-18 6.6E-23 186.3 14.8 169 301-484 44-212 (605)
112 1w8a_A SLIT protein; signaling 99.8 1.2E-18 4.2E-23 160.3 11.3 156 399-559 11-167 (192)
113 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.4E-22 158.8 17.5 156 97-256 21-176 (229)
114 4ezg_A Putative uncharacterize 99.8 2.4E-18 8.1E-23 159.2 12.8 134 392-531 62-195 (197)
115 4ezg_A Putative uncharacterize 99.8 2.5E-18 8.5E-23 159.0 11.5 154 92-252 41-194 (197)
116 1dce_A Protein (RAB geranylger 99.8 7.1E-21 2.4E-25 204.1 -6.6 187 322-532 347-548 (567)
117 1dce_A Protein (RAB geranylger 99.8 5.6E-21 1.9E-25 204.9 -8.1 201 300-524 349-567 (567)
118 4b8c_D Glucose-repressible alc 99.7 4.5E-19 1.5E-23 196.0 3.4 262 42-337 129-404 (727)
119 1xeu_A Internalin C; cellular 99.7 5.9E-18 2E-22 163.9 9.0 170 323-508 18-187 (263)
120 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.9E-23 192.0 4.8 218 301-531 174-405 (727)
121 1xeu_A Internalin C; cellular 99.7 8.1E-18 2.8E-22 162.9 8.8 168 301-484 20-187 (263)
122 1w8a_A SLIT protein; signaling 99.7 1.1E-16 3.7E-21 147.3 14.0 132 98-232 11-143 (192)
123 3sb4_A Hypothetical leucine ri 99.7 2.3E-17 7.8E-22 165.5 9.6 293 85-402 13-327 (329)
124 2ell_A Acidic leucine-rich nuc 99.7 5.4E-17 1.9E-21 145.9 9.1 138 93-233 22-164 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 2E-16 6.7E-21 142.2 12.3 134 395-531 23-161 (168)
126 2wfh_A SLIT homolog 2 protein 99.7 1.4E-16 4.9E-21 146.4 10.6 129 399-532 13-141 (193)
127 2wfh_A SLIT homolog 2 protein 99.7 5.4E-16 1.8E-20 142.6 13.1 129 424-557 13-142 (193)
128 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 141.5 7.2 128 94-223 16-148 (149)
129 2je0_A Acidic leucine-rich nuc 99.7 2.5E-16 8.4E-21 138.5 9.9 128 396-526 17-149 (149)
130 3sb4_A Hypothetical leucine ri 99.6 2.3E-16 7.9E-21 158.2 9.7 202 323-531 100-311 (329)
131 2o6r_A Variable lymphocyte rec 99.6 3E-15 1E-19 135.6 14.5 131 98-231 10-140 (177)
132 2o6r_A Variable lymphocyte rec 99.6 1.8E-15 6.3E-20 137.1 13.0 133 398-535 9-141 (177)
133 1a9n_A U2A', U2A'; complex (nu 99.6 1.3E-14 4.3E-19 131.4 11.6 133 392-531 15-154 (176)
134 1ds9_A Outer arm dynein; leuci 99.5 7E-17 2.4E-21 149.4 -4.9 133 391-531 43-186 (198)
135 1a9n_A U2A', U2A'; complex (nu 99.5 6.7E-15 2.3E-19 133.2 8.1 134 90-228 14-153 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 1.6E-16 5.4E-21 147.0 -5.4 132 367-506 43-185 (198)
137 3g39_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 124.4 11.8 106 424-532 12-117 (170)
138 4fdw_A Leucine rich hypothetic 99.5 1.8E-12 6.1E-17 132.8 22.1 129 301-433 249-382 (401)
139 4fdw_A Leucine rich hypothetic 99.5 3.4E-12 1.2E-16 130.8 23.0 151 301-458 227-383 (401)
140 2r9u_A Variable lymphocyte rec 99.5 2.1E-13 7.2E-18 122.9 11.8 106 424-532 15-120 (174)
141 4fs7_A Uncharacterized protein 99.5 6.4E-12 2.2E-16 129.0 24.4 327 90-497 66-392 (394)
142 4fs7_A Uncharacterized protein 99.5 3.7E-12 1.3E-16 130.8 22.3 332 110-522 62-393 (394)
143 3g39_A Variable lymphocyte rec 99.5 4.4E-13 1.5E-17 120.3 13.0 106 98-206 12-117 (170)
144 2r9u_A Variable lymphocyte rec 99.4 8.3E-13 2.8E-17 118.9 12.8 105 98-205 15-119 (174)
145 3un9_A NLR family member X1; l 99.4 1.3E-13 4.6E-18 139.8 2.5 86 445-530 155-252 (372)
146 3un9_A NLR family member X1; l 99.3 8.1E-14 2.8E-18 141.4 -1.8 168 323-515 71-261 (372)
147 2ifg_A High affinity nerve gro 99.3 1.3E-11 4.4E-16 124.5 11.2 102 401-506 13-116 (347)
148 4gt6_A Cell surface protein; l 99.3 6.5E-10 2.2E-14 114.0 23.3 129 114-247 58-190 (394)
149 2ifg_A High affinity nerve gro 99.2 2.1E-11 7.3E-16 122.8 11.4 129 424-557 11-144 (347)
150 4gt6_A Cell surface protein; l 99.2 7.2E-09 2.5E-13 106.2 25.3 132 390-529 259-390 (394)
151 2ra8_A Uncharacterized protein 99.0 4E-10 1.4E-14 113.3 6.0 84 443-528 250-341 (362)
152 2ra8_A Uncharacterized protein 99.0 6.4E-10 2.2E-14 111.8 6.9 178 321-504 136-341 (362)
153 4h09_A Hypothetical leucine ri 98.9 2.7E-07 9.1E-12 93.9 24.9 67 424-492 289-355 (379)
154 4h09_A Hypothetical leucine ri 98.9 4E-07 1.4E-11 92.6 23.8 150 346-501 192-341 (379)
155 1io0_A Tropomodulin; LRR prote 98.6 2.1E-08 7.1E-13 90.9 4.6 89 442-530 62-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 4.4E-08 1.5E-12 88.7 3.8 114 392-506 32-164 (185)
157 3rw6_A Nuclear RNA export fact 98.5 5.1E-08 1.7E-12 92.9 3.5 80 442-523 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.4 7.2E-08 2.5E-12 91.8 2.2 101 444-547 140-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 7.2E-07 2.5E-11 78.8 3.2 83 446-528 62-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 1.7E-06 5.9E-11 76.4 2.2 83 421-504 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 8.6E-05 2.9E-09 66.8 5.2 89 441-529 66-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.5E-09 65.5 3.8 112 394-506 39-170 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0015 5.1E-08 54.7 5.7 58 472-531 11-69 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 52.8 6.7 57 448-506 11-68 (130)
165 2lz0_A Uncharacterized protein 42.0 71 0.0024 24.4 6.5 45 107-152 8-52 (100)
166 2lz0_A Uncharacterized protein 37.0 1E+02 0.0035 23.5 6.7 38 342-380 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.6e-72 Score=625.30 Aligned_cols=519 Identities=30% Similarity=0.487 Sum_probs=386.3
Q ss_pred cCCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccccCC--------------CCcccc---cC--------------
Q 035922 40 VAGNETDREALLEFKSKITVDPFGVLGSWNESSHFCKWHES--------------LKLAGS---IS-------------- 88 (581)
Q Consensus 40 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~w~~~--------------~~~~g~---i~-------------- 88 (581)
+++.++|++||++||+++. ||. .+++|..+++||.|.|. ..+.|. +|
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 3346789999999999996 887 89999988899999982 223444 33
Q ss_pred ---------ccccCCCCCcEEECCCCCCCCCCch--hccCCCCCCEEEccCCCCCCCCcccC-cCCCCCCEEEccC----
Q 035922 89 ---------PYIGNLSFLRRLHLDNNNFTHAIPP--EIGRLRRLRGLTLNNNSIGGEIPATM-SRCSNIILMDLSV---- 152 (581)
Q Consensus 89 ---------~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~---- 152 (581)
+.++++++|++|+|++|.+++.+|. .++++++|++|+|++|.+.+.+|..+ .++++|++|++++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 4677778888888888888877777 77777777777777776665555443 3333333333333
Q ss_pred ---------------------------------------------CcCcccCCcccCCCCCCCEEECCCCcccccCCccC
Q 035922 153 ---------------------------------------------NQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSL 187 (581)
Q Consensus 153 ---------------------------------------------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 187 (581)
|.+++.+|. ++++++|++|++++|.+++.+|..+
T Consensus 165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l 243 (768)
T 3rgz_A 165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI 243 (768)
T ss_dssp EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH
Confidence 333333333 4455555555555555555445445
Q ss_pred cCCCCCcEEEccCCCCCC----------------------cCCCccCCC-CcccccccCCccCCCCCCccccCCCCccEE
Q 035922 188 GNLSSIIRLSLTYNNIAR----------------------SIPDTLGYL-ENLSFLSLGGNMLSGTIPSSIFNRSSITTF 244 (581)
Q Consensus 188 ~~l~~L~~L~l~~n~l~~----------------------~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 244 (581)
+++++|++|++++|.+++ .+|..+... ++|++|++++|++++.+|..+.++++|++|
T Consensus 244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 323 (768)
T 3rgz_A 244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323 (768)
T ss_dssp TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEE
T ss_pred hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEE
Confidence 554444444444444432 333333332 555555555555555555555566666666
Q ss_pred EcccccCcccCChhhhcCCCCCceeeccccCcc----------------------------------------eeEeccC
Q 035922 245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT----------------------------------------ELLLLND 284 (581)
Q Consensus 245 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~----------------------------------------~~l~l~~ 284 (581)
++++|.+.+.+|......+++|++|++++|.+. +.+++++
T Consensus 324 ~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp ECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred ECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 666666665555553333555555555555432 3344455
Q ss_pred CcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccC
Q 035922 285 NNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNI 364 (581)
Q Consensus 285 n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 364 (581)
|.+++.+|..+..+. +|++|++++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|.+++.+
T Consensus 404 n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 555555666666654 7777777777777777777777788888888888887778888888888888888888888888
Q ss_pred CccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccc---
Q 035922 365 PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV--- 441 (581)
Q Consensus 365 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l--- 441 (581)
|..+..+++|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+..++++ +.|++++|+++|.+|..+
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGGGGTT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChHHhcc
Confidence 8888888889999999999888888888889999999999999988899999999998 899999998887777543
Q ss_pred -------------------------------------------------------------------cCCCCCCeeeccC
Q 035922 442 -------------------------------------------------------------------GNLKNLGVLDISG 454 (581)
Q Consensus 442 -------------------------------------------------------------------~~l~~L~~L~Ls~ 454 (581)
..+++|++||+++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 2356789999999
Q ss_pred CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCC
Q 035922 455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYV 534 (581)
Q Consensus 455 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~i 534 (581)
|+++|.+|..++.+++|+.|+|++|+++|.+|+.++.+++|+.||+++|+++|.+|..+..+++|++||+++|+++|. |
T Consensus 642 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~-i 720 (768)
T 3rgz_A 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP-I 720 (768)
T ss_dssp SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE-C
T ss_pred CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccccc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCccccCCcCcccccCCCCCccCCCCCCCCCCCC
Q 035922 535 PTEGVIKNSSATSVMGNSKLCGGIPKLQFPRCTK 568 (581)
Q Consensus 535 p~~~~~~~l~~l~~~gN~~lcg~~~~~~~~~c~~ 568 (581)
|+.++|.++...+|.|||++||.+ .++|..
T Consensus 721 P~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~ 750 (768)
T 3rgz_A 721 PEMGQFETFPPAKFLNNPGLCGYP----LPRCDP 750 (768)
T ss_dssp CSSSSGGGSCGGGGCSCTEEESTT----SCCCCS
T ss_pred CCchhhccCCHHHhcCCchhcCCC----CcCCCC
Confidence 999999999999999999999964 247874
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.1e-59 Score=521.57 Aligned_cols=480 Identities=30% Similarity=0.441 Sum_probs=348.4
Q ss_pred CCccccC---CCCcccccCccccCCCCCcEEECCCCCCCCC--------------------------CchhccCCCCCCE
Q 035922 73 HFCKWHE---SLKLAGSISPYIGNLSFLRRLHLDNNNFTHA--------------------------IPPEIGRLRRLRG 123 (581)
Q Consensus 73 ~~c~w~~---~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~--------------------------~p~~l~~l~~L~~ 123 (581)
..-+|.. .+.+.|.... -.+++.|+|+++.+.|. +|+.++++++|++
T Consensus 29 ~l~~W~~~~~~C~w~gv~C~----~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~ 104 (768)
T 3rgz_A 29 LLPDWSSNKNPCTFDGVTCR----DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTS 104 (768)
T ss_dssp SSTTCCTTSCGGGSTTEEEE----TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCE
T ss_pred cccCCCCCCCCcCCcceEEC----CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCE
Confidence 3457853 4567776543 24566777776666654 3357888999999
Q ss_pred EEccCCCCCCCCcc--cCcCCCCCCEEEccCCcCcccCCccc-CCCCCCCEEECCCCcccccCCcc--------------
Q 035922 124 LTLNNNSIGGEIPA--TMSRCSNIILMDLSVNQLLGNIPPEF-GSLSKIKDLRSFMNNLTGSIPSS-------------- 186 (581)
Q Consensus 124 L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~-------------- 186 (581)
|+|++|.++|.+|. .++++++|++|++++|.+.+.+|..+ .++++|++|++++|++++..|..
T Consensus 105 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~ 184 (768)
T 3rgz_A 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184 (768)
T ss_dssp EECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE
T ss_pred EECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEE
Confidence 99999999988888 89999999999999999987777654 55566666666555554333221
Q ss_pred -----------CcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCc---
Q 035922 187 -----------LGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ--- 252 (581)
Q Consensus 187 -----------l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--- 252 (581)
+..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|..+..+++|++|++++|.+.
T Consensus 185 Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 185 ISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp CCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESC
T ss_pred CCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCcc
Confidence 13445555555555555554443 555555555555555555444444444433333333333332
Q ss_pred -------------------ccCChhhhcC------------------------CCCCceeeccccCcc------------
Q 035922 253 -------------------GNIPLDFGFT------------------------LPNLQHFGIVFNNFT------------ 277 (581)
Q Consensus 253 -------------------~~~~~~~~~~------------------------l~~L~~L~l~~n~~~------------ 277 (581)
+.+|..+... +++|++|++++|.+.
T Consensus 264 ~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 2333333222 444444444444432
Q ss_pred --eeEeccCCcCcccCchhhhhcccC--------------------------CcEEEccCCcccccCchhhcCCCCCCEE
Q 035922 278 --ELLLLNDNNFGGLIPECISNFSTT--------------------------LASLFLDNNKIFGSIPPGIGKLVNLRRL 329 (581)
Q Consensus 278 --~~l~l~~n~l~~~~p~~~~~~~~~--------------------------L~~L~L~~n~l~~~~p~~l~~l~~L~~L 329 (581)
+.+++++|.+++.+|..+..+.++ |++|++++|.+++.+|..+..+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 456677777776677666554323 4444444444555566666777777777
Q ss_pred EeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922 330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS 409 (581)
Q Consensus 330 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 409 (581)
++++|++++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++.
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 77777777777777777777888888888877777877888888888888888888888888888888899999999888
Q ss_pred ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc------------------------
Q 035922 410 GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL------------------------ 465 (581)
Q Consensus 410 ~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l------------------------ 465 (581)
+.+|.++..++++ ++|++++|+++|.+|..+..+++|++|++++|+++|.+|..+
T Consensus 504 ~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 504 GEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp SCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 8888888888888 889999999988899889999999999999998887776543
Q ss_pred ----------------------------------------------cCCCCCcEEECCCCcCcccCcccccCCCCCCEEE
Q 035922 466 ----------------------------------------------GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWD 499 (581)
Q Consensus 466 ----------------------------------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 499 (581)
+.+++|+.|++++|+++|.+|..++.++.|+.|+
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 662 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILN 662 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEe
Confidence 3357789999999999999999999999999999
Q ss_pred CCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccCCCC
Q 035922 500 FAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGGIPK 560 (581)
Q Consensus 500 ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~~~~ 560 (581)
+++|.++|.+|..+..+++|++||+++|+++|. +|. .+.++.|+.+++++|+ +.|.+|.
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~ls~N~-l~g~iP~ 722 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTMLTEIDLSNNN-LSGPIPE 722 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC-CCGGGGGCCCCSEEECCSSE-EEEECCS
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECcCCc-ccccCCC
Confidence 999999999999999999999999999999999 886 4788999999999997 8888875
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-54 Score=474.19 Aligned_cols=455 Identities=20% Similarity=0.167 Sum_probs=343.8
Q ss_pred CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922 96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF 175 (581)
Q Consensus 96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 175 (581)
++++|++++|.+++..|..|.++++|++|+|++|.+.+..|.+|+++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 57888888888887777788888888888888888887778888888888888888888887778788888888888888
Q ss_pred CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCcc--EEEcccccCcc
Q 035922 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT--TFSVVLNRMQG 253 (581)
Q Consensus 176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--~L~l~~n~l~~ 253 (581)
+|++++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+ ++++++|.+.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 8888866667788888888888888888764434444588888888888888866677777777777 77888887776
Q ss_pred cCChhhhcCCCCCce----------------------------------------------------eeccccCcc----
Q 035922 254 NIPLDFGFTLPNLQH----------------------------------------------------FGIVFNNFT---- 277 (581)
Q Consensus 254 ~~~~~~~~~l~~L~~----------------------------------------------------L~l~~n~~~---- 277 (581)
..|..+. ..+|+. +++++|.+.
T Consensus 194 ~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 194 IEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp ECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred cChhHhh--hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 6554432 233333 444333332
Q ss_pred ---------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccc-cccCC
Q 035922 278 ---------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPS-AIGDL 347 (581)
Q Consensus 278 ---------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l 347 (581)
+.+++++|.++ .+|+.+..+. +|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 34445555444 3455454443 566666666666555555556666666666666665544433 36666
Q ss_pred CCCCeEeccCCcccccC--CccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcc-hhcccCCcc
Q 035922 348 QNLRMLGMSGNRFSGNI--PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQ-LFGLSSLSI 424 (581)
Q Consensus 348 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~ 424 (581)
++|++|++++|.+++.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+.. +..++++ +
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL-K 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC-C
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC-C
Confidence 77777777777766544 556777777888888888777777777888888888888888887665544 6778888 8
Q ss_pred eeEcCCCcccccCCccccCCCCCCeeeccCCcCccc---cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922 425 SLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE---IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501 (581)
Q Consensus 425 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 501 (581)
.|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|++|++++|++.+..|..|..+++|+.|+++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 888888888887888888899999999999998762 23568889999999999999998889999999999999999
Q ss_pred CCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922 502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 502 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~ 557 (581)
+|++++.+|+.+..++.| +|++++|++++. .|. ...+++++.+++.|||+.|..
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHISII-LPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCCCCC-CGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCccCcCChhHhCccccc-EEECcCCccccc-CHhhcccCCCCCEEeCCCCCccccC
Confidence 999999999999999999 999999999986 665 367889999999999999854
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.5e-55 Score=479.44 Aligned_cols=479 Identities=19% Similarity=0.232 Sum_probs=373.7
Q ss_pred CCHhHHHHHHHHHhcCCCCCCCC-------CCCCCCCCCCccc---cCCCCcccccCccccCCCCCcEEECCCCCCCCCC
Q 035922 42 GNETDREALLEFKSKITVDPFGV-------LGSWNESSHFCKW---HESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAI 111 (581)
Q Consensus 42 ~~~~~~~~ll~~k~~~~~~~~~~-------l~~w~~~~~~c~w---~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~ 111 (581)
....|+.||.++++++..+.+.. ..+|+.+.++|.| .|..+- .-.+++.|+|+++.+.|.+
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~---------~~~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLN---------SNGRVTGLSLEGFGASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEEC---------TTCCEEEEECTTSCCEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEc---------CCCCEEEEEecCcccCCcC
Confidence 33569999999999986555543 3489988899999 653221 0157899999999999999
Q ss_pred chhccCCCCCCEEEccCCCC------CC------CCcccCcCCCCCCEEEccCCcCcccCCcccCC--------------
Q 035922 112 PPEIGRLRRLRGLTLNNNSI------GG------EIPATMSRCSNIILMDLSVNQLLGNIPPEFGS-------------- 165 (581)
Q Consensus 112 p~~l~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-------------- 165 (581)
|++++++++|++|+|++|.+ .+ .+|... +.+|+ +++++|.+.+.+|..+..
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 99999999999999999976 22 233322 44556 677777666666655441
Q ss_pred -----CCCCCEEECC--CCcccccCCccCcCCCCCcEEEccCCCCCCc-----------------CCCccC--CCCcccc
Q 035922 166 -----LSKIKDLRSF--MNNLTGSIPSSLGNLSSIIRLSLTYNNIARS-----------------IPDTLG--YLENLSF 219 (581)
Q Consensus 166 -----l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~ 219 (581)
...++.+.+. .|++++ +|..++++++|++|++++|.+++. +|+.++ ++++|++
T Consensus 175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~ 253 (636)
T 4eco_A 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253 (636)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCE
Confidence 1223333332 467777 888888888888888888888875 788888 8888888
Q ss_pred cccCCccCCCCCCccccCCCCccEEEccccc-Ccc-cCChhhhc-----CCCCCceeeccccCcceeEeccCCcCcccCc
Q 035922 220 LSLGGNMLSGTIPSSIFNRSSITTFSVVLNR-MQG-NIPLDFGF-----TLPNLQHFGIVFNNFTELLLLNDNNFGGLIP 292 (581)
Q Consensus 220 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~-----~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p 292 (581)
|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.. .+++|+.|++++|. ++ .+|
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-----------l~-~ip 321 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-----------LK-TFP 321 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-----------CS-SCC
T ss_pred EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-----------CC-ccC
Confidence 8888888888888888888888888888887 887 77777654 12777766655544 44 567
Q ss_pred h--hhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCC-CCeEeccCCcccccCCccCC
Q 035922 293 E--CISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQN-LRMLGMSGNRFSGNIPLSVG 369 (581)
Q Consensus 293 ~--~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~ 369 (581)
. .+..+. +|++|++++|.++|.+| .++.+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+.
T Consensus 322 ~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 322 VETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred chhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 7 677775 89999999999988888 7888889999999999888 77888888888 999999999988 7787776
Q ss_pred CCC--CCcEEeecCcccCCCCccccc-------CCCCCcEEECCCCcccccCCcchhc-ccCCcceeEcCCCcccccCCc
Q 035922 370 NLK--MLIQLEVSENFLQGTIPSSLC-------QCKSLIGINFSKNNLSGTIPPQLFG-LSSLSISLDLSRNHFTGSLPI 439 (581)
Q Consensus 370 ~l~--~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~~L~Ls~n~l~~~~p~ 439 (581)
... +|++|++++|.+++.+|..+. .+++|++|++++|++. .+|..++. ++.+ +.|++++|+++ .+|.
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls~N~l~-~i~~ 474 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL-SSINLMGNMLT-EIPK 474 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC-SEEECCSSCCS-BCCS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC-CEEECCCCCCC-CcCH
Confidence 654 899999999999888888887 7788999999999988 67766554 7888 88999999988 5665
Q ss_pred cccC--------CCCCCeeeccCCcCccccCcccc--CCCCCcEEECCCCcCcccCcccccCCCCCCEEEC------CCC
Q 035922 440 EVGN--------LKNLGVLDISGNLLSGEIPISLG--SCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDF------AQN 503 (581)
Q Consensus 440 ~l~~--------l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~l------s~n 503 (581)
.+.. +++|++|++++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+..+++|+.|++ ++|
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 4332 238999999999998 7888776 88999999999999986 8888888999999999 457
Q ss_pred ccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922 504 NLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~ 557 (581)
++.+.+|..+..+++|++|++++|++ +. +|.. .+++|+.+++++||..|-.
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~-ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RK-VNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CB-CCSC-CCTTCCEEECCSCTTCEEE
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-Cc-cCHh-HhCcCCEEECcCCCCcccc
Confidence 78888898899999999999999999 55 7764 4478999999999888743
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-52 Score=464.47 Aligned_cols=472 Identities=22% Similarity=0.224 Sum_probs=320.3
Q ss_pred cccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922 83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE 162 (581)
Q Consensus 83 ~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 162 (581)
+.+..+..++++++|++|++++|.+++..|..|+++++|++|++++|.+++..+.+|+++++|++|++++|.+++..|..
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 116 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCT
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhH
Confidence 33434445777777777777777777777777777777777777777777554456777777777777777777666667
Q ss_pred cCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccC--CCCcccccccCCccCCCCCCccccCC--
Q 035922 163 FGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLG--YLENLSFLSLGGNMLSGTIPSSIFNR-- 238 (581)
Q Consensus 163 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~l~~n~l~~~~p~~l~~l-- 238 (581)
|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+
T Consensus 117 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 196 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196 (680)
T ss_dssp TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE
T ss_pred ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh
Confidence 77777777777777777777677777777777777777777665554433 34667777777776665555443322
Q ss_pred -------------------------CCccEEEcccccCcccCChhhhcCC--CCCceeeccccCcc-------------e
Q 035922 239 -------------------------SSITTFSVVLNRMQGNIPLDFGFTL--PNLQHFGIVFNNFT-------------E 278 (581)
Q Consensus 239 -------------------------~~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~-------------~ 278 (581)
++|+.|++++|.+.+..+..+.. + ++|+.|++++|.+. +
T Consensus 197 L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (680)
T 1ziw_A 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275 (680)
T ss_dssp ECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCcccccCccccc
Confidence 22333444444444333333222 2 22444444444332 3
Q ss_pred eEeccCCcCcccCchhh---------------------------------hhcccCCcEEEccCCcccccCchhhcCCCC
Q 035922 279 LLLLNDNNFGGLIPECI---------------------------------SNFSTTLASLFLDNNKIFGSIPPGIGKLVN 325 (581)
Q Consensus 279 ~l~l~~n~l~~~~p~~~---------------------------------~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~ 325 (581)
.+++++|.+.+..|..+ ..+ ++|++|++++|.+.+..+..+..+++
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~ 354 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLIN 354 (680)
T ss_dssp EEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTT
T ss_pred EeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhccccC
Confidence 34444444444333322 222 25666666666666655555555555
Q ss_pred CCEEEeecC----------------------------cCcccccccccCCCCCCeEeccCCcccccCC-ccCCCCCCCcE
Q 035922 326 LRRLYVWNN----------------------------KLSGTIPSAIGDLQNLRMLGMSGNRFSGNIP-LSVGNLKMLIQ 376 (581)
Q Consensus 326 L~~L~L~~n----------------------------~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~ 376 (581)
|++|++++| ++++..|.++..+++|++|++++|.+++.++ ..+.++++|++
T Consensus 355 L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~ 434 (680)
T 1ziw_A 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434 (680)
T ss_dssp CCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCE
T ss_pred CcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccE
Confidence 555555443 3444445555566666666666666655444 45556666666
Q ss_pred EeecCcccCCCCcccccCCCCCcEEECCCCccc--ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccC
Q 035922 377 LEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS--GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG 454 (581)
Q Consensus 377 L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 454 (581)
|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..++++ +.|++++|++++..+..+..+++|++|++++
T Consensus 435 L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~ 513 (680)
T 1ziw_A 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKLEILDLQH 513 (680)
T ss_dssp EECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence 666666666555666666667777777776664 4677888888888 8999999999977777788999999999999
Q ss_pred CcCccccC--------ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcC
Q 035922 455 NLLSGEIP--------ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSY 526 (581)
Q Consensus 455 n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~ 526 (581)
|++++..+ ..+..+++|+.|++++|++....+..|..+++|+.|++++|++++..+..|..+++|++|++++
T Consensus 514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 99885322 2378899999999999999855555789999999999999999987777889999999999999
Q ss_pred CCCCCCCCCC-cc-ccCCcCcccccCCCCCccCC
Q 035922 527 NDLGARYVPT-EG-VIKNSSATSVMGNSKLCGGI 558 (581)
Q Consensus 527 N~l~~~~ip~-~~-~~~~l~~l~~~gN~~lcg~~ 558 (581)
|++++. .|. .+ .+++++.+++.|||+.|++.
T Consensus 594 N~l~~~-~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 594 NLITSV-EKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCBC-CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCcc-ChhHhcccccccCEEEccCCCcccCCc
Confidence 999986 443 23 68899999999999999763
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-52 Score=460.17 Aligned_cols=462 Identities=19% Similarity=0.190 Sum_probs=319.8
Q ss_pred cccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccC
Q 035922 85 GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFG 164 (581)
Q Consensus 85 g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 164 (581)
+..+..++++++|++|++++|.+++..|..|.++++|++|+|++|.+++..|.+|+++++|++|++++|.+++..+..++
T Consensus 46 ~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 46 ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT
T ss_pred EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccC
Confidence 33344555666666666666666655555566666666666666666655556666666666666666666555545566
Q ss_pred CCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccc----ccccCCccCCCCCCccccCCC
Q 035922 165 SLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS----FLSLGGNMLSGTIPSSIFNRS 239 (581)
Q Consensus 165 ~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~l~~n~l~~~~p~~l~~l~ 239 (581)
++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+ +|++++|.++ .++...+...
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~ 204 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc
Confidence 66666666666666554 3455566666666666666666555555555554443 4666666665 3333333334
Q ss_pred CccEEEcccccCcccCChhhhcCCCCCceeeccccCcc---------------------eeEec-cCCcCcccCch----
Q 035922 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT---------------------ELLLL-NDNNFGGLIPE---- 293 (581)
Q Consensus 240 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~---------------------~~l~l-~~n~l~~~~p~---- 293 (581)
+|+.+++++|.+.+.........++.++.+++..+.+. +.+++ ..+.+.+.+|.
T Consensus 205 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 66666666665553332222233444444443221111 11112 33344444433
Q ss_pred -----------------hhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEecc
Q 035922 294 -----------------CISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356 (581)
Q Consensus 294 -----------------~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 356 (581)
.+..+. +|++|++++|.+ +.+|. + .+++|++|++++|+..+.. .+..+++|++|+++
T Consensus 285 ~~L~~L~l~~~~~~~l~~l~~~~-~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 358 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLS 358 (606)
T ss_dssp TTCSEEEEESCCCCCCCCCCTTC-CCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECC
T ss_pred CCCCEEEecCccchhhhhccccc-cCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECc
Confidence 233332 556666666665 35553 3 5666666666666444333 45677888888888
Q ss_pred CCccccc--CCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcc
Q 035922 357 GNRFSGN--IPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHF 433 (581)
Q Consensus 357 ~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l 433 (581)
+|.+++. ++..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..++++ +.|++++|.+
T Consensus 359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l 436 (606)
T 3vq2_A 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNT 436 (606)
T ss_dssp SSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCC
T ss_pred CCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCC
Confidence 8888765 36777888899999999998875 56788899999999999999997777 678889999 8999999999
Q ss_pred cccCCccccCCCCCCeeeccCCcCcc-ccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchh
Q 035922 434 TGSLPIEVGNLKNLGVLDISGNLLSG-EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF 512 (581)
Q Consensus 434 ~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 512 (581)
++..|..+.++++|++|++++|++++ .+|..++.+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 99899999999999999999999997 47889999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCEEECcCCCCCCCCCCC-ccccC-CcCcccccCCCCCccC
Q 035922 513 LAGFKLLENVNLSYNDLGARYVPT-EGVIK-NSSATSVMGNSKLCGG 557 (581)
Q Consensus 513 l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~-~l~~l~~~gN~~lcg~ 557 (581)
+..+++|++|++++|+++. +|. ...+. +++.+++.|||+.|+.
T Consensus 517 ~~~l~~L~~L~l~~N~l~~--~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp TTTCTTCCEEECTTSCCCC--EESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred ccCCCcCCEEECCCCcCcc--cCHhHhhhcccCcEEEccCCCcccCC
Confidence 9999999999999999985 665 45554 6999999999999965
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5e-52 Score=454.75 Aligned_cols=451 Identities=19% Similarity=0.161 Sum_probs=401.2
Q ss_pred CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCC
Q 035922 81 LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIP 160 (581)
Q Consensus 81 ~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 160 (581)
..+.+..|..++++++|++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|+++++|++|++++|.+++..+
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~ 122 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc
Confidence 34555567789999999999999999999889999999999999999999998889999999999999999999998778
Q ss_pred cccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccc--ccccCCccCCCCCCccccCC
Q 035922 161 PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS--FLSLGGNMLSGTIPSSIFNR 238 (581)
Q Consensus 161 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~--~L~l~~n~l~~~~p~~l~~l 238 (581)
..++++++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+++..|..+...
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 8899999999999999999974444555699999999999999988888899999999 89999999986655543221
Q ss_pred ---------------------------------------------------CCccEEEcccccCcccCChhhhcCCCCCc
Q 035922 239 ---------------------------------------------------SSITTFSVVLNRMQGNIPLDFGFTLPNLQ 267 (581)
Q Consensus 239 ---------------------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 267 (581)
.+++.+++++|.+.+..+..+. .+++|+
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 281 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQ 281 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTT-TCTTCS
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhc-cccCCC
Confidence 1577788888888765554444 489999
Q ss_pred eeeccccCcc------------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCch-hhcCCCCCCEEEeecC
Q 035922 268 HFGIVFNNFT------------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP-GIGKLVNLRRLYVWNN 334 (581)
Q Consensus 268 ~L~l~~n~~~------------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n 334 (581)
+|++++|.++ +.+++++|.+.+..|..+..++ +|++|++++|.+.+.+|. .+..+++|++|++++|
T Consensus 282 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp EEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred EEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 9999999876 6799999999998888888886 999999999999877665 4899999999999999
Q ss_pred cCcccc--cccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc-ccCCCCCcEEECCCCccccc
Q 035922 335 KLSGTI--PSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS-LCQCKSLIGINFSKNNLSGT 411 (581)
Q Consensus 335 ~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~ls~n~l~~~ 411 (581)
++++.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|.. +..+++|++|++++|.+.+.
T Consensus 361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 440 (606)
T 3t6q_A 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440 (606)
T ss_dssp CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence 998765 778999999999999999999888999999999999999999999876654 88999999999999999988
Q ss_pred CCcchhcccCCcceeEcCCCccccc---CCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCccc
Q 035922 412 IPPQLFGLSSLSISLDLSRNHFTGS---LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSS 488 (581)
Q Consensus 412 ~p~~~~~l~~L~~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 488 (581)
.|..+..++++ +.|++++|++++. .+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|+.
T Consensus 441 ~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 519 (606)
T 3t6q_A 441 SEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519 (606)
T ss_dssp CTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred CHHHHhCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhH
Confidence 89999999999 8999999999863 3356889999999999999999888999999999999999999999999999
Q ss_pred ccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922 489 LRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536 (581)
Q Consensus 489 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~ 536 (581)
+..++.| .|++++|.+++.+|..+..+++|++|++++|++.+. .+.
T Consensus 520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-c~~ 565 (606)
T 3t6q_A 520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT-CSN 565 (606)
T ss_dssp GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS-GGG
T ss_pred hCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc-CCc
Confidence 9999999 999999999999999999999999999999999986 653
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.6e-50 Score=445.98 Aligned_cols=461 Identities=18% Similarity=0.196 Sum_probs=311.9
Q ss_pred ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922 86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS 165 (581)
Q Consensus 86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (581)
.+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+++++++|++|++++|.+++..+..|++
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 3555443 68999999999999888888999999999999999999999999999999999999999999766667999
Q ss_pred CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc--CCCCccE
Q 035922 166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF--NRSSITT 243 (581)
Q Consensus 166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~ 243 (581)
+++|++|++++|++++..|..++++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+. .+++|++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 99999999999999977778899999999999999999999899999999999999999999976666543 5689999
Q ss_pred EEcccccCcccCChhhhcCCCCCceeeccccCcc----------------eeEeccCCcCcccCchhhhhcc-cCCcEEE
Q 035922 244 FSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT----------------ELLLLNDNNFGGLIPECISNFS-TTLASLF 306 (581)
Q Consensus 244 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~----------------~~l~l~~n~l~~~~p~~~~~~~-~~L~~L~ 306 (581)
|++++|.+.+..+..+.. +++|+.+++..+.+. +.+++++|.+.+..|..+..+. ++|++|+
T Consensus 176 L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHA-IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EECTTCCCCCBCTTGGGG-SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EECCCCcccccChhhhhh-hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 999999999877766654 777777777665442 5677777777777777666654 2477777
Q ss_pred ccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec-------------------------------
Q 035922 307 LDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM------------------------------- 355 (581)
Q Consensus 307 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L------------------------------- 355 (581)
+++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|++
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 7777777666667777777777777777776665555555555555554
Q ss_pred --cCCcccccCCccCCCCCCCcEEeecCcc----------------------------cCCCCcccccCCCCCcEEECCC
Q 035922 356 --SGNRFSGNIPLSVGNLKMLIQLEVSENF----------------------------LQGTIPSSLCQCKSLIGINFSK 405 (581)
Q Consensus 356 --s~n~l~~~~~~~~~~l~~L~~L~L~~n~----------------------------l~~~~p~~l~~l~~L~~L~ls~ 405 (581)
++|.+++..+..|.++++|++|++++|. +++..|..+..+++|++|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 4555544444444444444444443332 2222223333333334444444
Q ss_pred CcccccCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc--cccCccccCCCCCcEEECCCCcCc
Q 035922 406 NNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS--GEIPISLGSCTSLEKLLMQGNKFY 482 (581)
Q Consensus 406 n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~ 482 (581)
|++.+.+| ..+..++.+ +.|++++|++++..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|+++
T Consensus 415 N~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENI-FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SCCEEECCSGGGTTCTTC-CEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CcCccccCcccccCcccc-cEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 43333332 233333333 33444444443333333444444444444444443 344555556666666666666666
Q ss_pred ccCcccccCCCCCCEEECCCCccccccc--------hhhhcCCCCCEEECcCCCCCCCCCCC--ccccCCcCcccccCCC
Q 035922 483 GPIPSSLRSLRGLSVWDFAQNNLSGEIP--------KFLAGFKLLENVNLSYNDLGARYVPT--EGVIKNSSATSVMGNS 552 (581)
Q Consensus 483 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p--------~~l~~l~~L~~L~ls~N~l~~~~ip~--~~~~~~l~~l~~~gN~ 552 (581)
+..+..|..+++|+.|++++|.+++..+ ..+.++++|++|++++|+++. +|. ...+++|+.+++++|.
T Consensus 494 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~ 571 (680)
T 1ziw_A 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLNN 571 (680)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCC--CCHHHcccccCcceeECCCCC
Confidence 5555556666666666666666654321 125556666666666666653 443 3455666666666664
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-51 Score=446.36 Aligned_cols=455 Identities=19% Similarity=0.160 Sum_probs=387.6
Q ss_pred ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922 86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS 165 (581)
Q Consensus 86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (581)
.+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|++
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 3454443 78999999999999888889999999999999999999888999999999999999999999888999999
Q ss_pred CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCC-cCCCccCCCCcccccccCCccCCCCCCccccCCCCcc--
Q 035922 166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSIT-- 242 (581)
Q Consensus 166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~-- 242 (581)
+++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..|..+..+.+|+
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 9999999999999997777889999999999999999986 5799999999999999999999987787777766654
Q ss_pred --EEEcccccCcccCChhhhcCCCCCceeeccccCcc--------------eeEeccCCcCcc---------cCchhh--
Q 035922 243 --TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT--------------ELLLLNDNNFGG---------LIPECI-- 295 (581)
Q Consensus 243 --~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~--------------~~l~l~~n~l~~---------~~p~~~-- 295 (581)
++++++|.+.+..+..+ . ..+|+.|++++|.+. +.+.+..+.+.+ ..+..+
T Consensus 183 l~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAF-Q-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cceeeccCCCcceeCcccc-c-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 89999999986544443 3 348999999998764 233332222211 111111
Q ss_pred ------------------hh--cccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec
Q 035922 296 ------------------SN--FSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355 (581)
Q Consensus 296 ------------------~~--~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 355 (581)
.. ..++|+.|++++|.+. .+| .+..+++|++|++++|++ +.+| .+ .+++|++|++
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence 11 0147888888888886 455 688888999999999999 5777 45 8899999999
Q ss_pred cCCcccccCCccCCCCCCCcEEeecCcccCCC--CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcc
Q 035922 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT--IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF 433 (581)
Q Consensus 356 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l 433 (581)
++|...+.. .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+. .+|..+..++++ +.|++++|++
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L-~~L~l~~n~l 411 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL-QHLDFQHSTL 411 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC-CEEECTTSEE
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC-CeeECCCCcc
Confidence 999665444 567899999999999998866 4788899999999999999998 577889999999 8999999999
Q ss_pred cccCC-ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc-cCcccccCCCCCCEEECCCCccccccch
Q 035922 434 TGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG-PIPSSLRSLRGLSVWDFAQNNLSGEIPK 511 (581)
Q Consensus 434 ~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~ls~n~l~~~~p~ 511 (581)
.+..| ..+..+++|++|++++|++++..|..+..+++|++|++++|++.+ .+|..++.+++|+.|++++|.+++.+|.
T Consensus 412 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp ESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 98777 688999999999999999999999999999999999999999998 4788999999999999999999999999
Q ss_pred hhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCC
Q 035922 512 FLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKL 554 (581)
Q Consensus 512 ~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~l 554 (581)
.+..+++|++|++++|++++. +|. .+.+++|+.+++++|..-
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCC
T ss_pred hhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCc
Confidence 999999999999999999987 665 467889999999999843
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-52 Score=465.73 Aligned_cols=480 Identities=19% Similarity=0.191 Sum_probs=367.7
Q ss_pred cCCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCC-----CC--ccccCCC------CcccccCccccCCCCCcEEECCCCC
Q 035922 40 VAGNETDREALLEFKSKITVDPFGVLGSWNESS-----HF--CKWHESL------KLAGSISPYIGNLSFLRRLHLDNNN 106 (581)
Q Consensus 40 ~~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~-----~~--c~w~~~~------~~~g~i~~~~~~l~~L~~L~Ls~n~ 106 (581)
+++..+|++||++||+++. +| +|+... ++ |.|.-.. ...|..... -.+++.|+|+++.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~---~~~V~~L~Ls~~~ 334 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN---NGRVTGLSLAGFG 334 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT---TSCEEEEECTTTC
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecC---CCCEEEEECccCC
Confidence 3345679999999999994 55 776543 55 9992211 012222111 2578999999999
Q ss_pred CCCCCchhccCCCCCCEEEc-cCCCCCCCCcccC----------------------------------------------
Q 035922 107 FTHAIPPEIGRLRRLRGLTL-NNNSIGGEIPATM---------------------------------------------- 139 (581)
Q Consensus 107 l~~~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~l---------------------------------------------- 139 (581)
+.|.+|+.|++|++|++|+| ++|.++|..|...
T Consensus 335 L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 99999999999999999999 8887765532210
Q ss_pred -----cCCCCCCEEEccC--CcCcccCCcccCCCCCCCEEECCCCcccc-----------------cCCccCc--CCCCC
Q 035922 140 -----SRCSNIILMDLSV--NQLLGNIPPEFGSLSKIKDLRSFMNNLTG-----------------SIPSSLG--NLSSI 193 (581)
Q Consensus 140 -----~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L 193 (581)
.....++.+.+.. |.+++ +|..++++++|++|++++|++++ .+|..++ ++++|
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L 493 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDL 493 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCC
Confidence 1122333444443 78887 88899999999999999999998 3899988 99999
Q ss_pred cEEEccCCCCCCcCCCccCCCCcccccccCCcc-CCC-CCCccccCCC-------CccEEEcccccCcccCCh--hhhcC
Q 035922 194 IRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM-LSG-TIPSSIFNRS-------SITTFSVVLNRMQGNIPL--DFGFT 262 (581)
Q Consensus 194 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~~ 262 (581)
++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|..+++++ +|+.|++++|.+. .+|. .+..
T Consensus 494 ~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~- 571 (876)
T 4ecn_A 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK- 571 (876)
T ss_dssp CEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-
T ss_pred CEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-
Confidence 999999999999999999999999999999998 888 7888766555 9999999999998 7877 5554
Q ss_pred CCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCC-CCEEEeecCcCccccc
Q 035922 263 LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN-LRRLYVWNNKLSGTIP 341 (581)
Q Consensus 263 l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~ 341 (581)
+++|+.|++++|.+. .+| .+..+. +|+.|++++|.+. .+|..+..+++ |++|++++|+++ .+|
T Consensus 572 L~~L~~L~Ls~N~l~------------~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp 635 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR------------HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP 635 (876)
T ss_dssp CTTCCEEECTTSCCC------------BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC
T ss_pred CCCCCEEECCCCCcc------------cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc
Confidence 888888777666543 345 445554 8899999999988 78888888888 999999999888 678
Q ss_pred ccccCCCC--CCeEeccCCcccccCCccC---C--CCCCCcEEeecCcccCCCCcccc-cCCCCCcEEECCCCcccccCC
Q 035922 342 SAIGDLQN--LRMLGMSGNRFSGNIPLSV---G--NLKMLIQLEVSENFLQGTIPSSL-CQCKSLIGINFSKNNLSGTIP 413 (581)
Q Consensus 342 ~~l~~l~~--L~~L~Ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ls~n~l~~~~p 413 (581)
..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.++ .+|..+ ..+++|++|++++|++. .+|
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 77766654 8999999999887665332 2 3458889999999888 455544 47888999999999888 777
Q ss_pred cchhccc--------CCcceeEcCCCcccccCCcccc--CCCCCCeeeccCCcCccccCccccCCCCCcEEECCC-----
Q 035922 414 PQLFGLS--------SLSISLDLSRNHFTGSLPIEVG--NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG----- 478 (581)
Q Consensus 414 ~~~~~l~--------~L~~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~----- 478 (581)
..++... +| +.|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls 790 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLL-TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAE 790 (876)
T ss_dssp TTSSSCTTSCCTTGGGC-CEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTT
T ss_pred hHHhccccccccccCCc-cEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcc
Confidence 7665433 67 88999999888 7888876 88899999999999986 788888899999998876
Q ss_pred -CcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCc
Q 035922 479 -NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLC 555 (581)
Q Consensus 479 -n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lc 555 (581)
|++.+.+|..+..+++|+.|++++|.+ +.+|..+. ++|+.||+++|++..................+.+|+..+
T Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 791 GNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred cccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 778888888888899999999999988 67787655 689999999998876411111112234455666666544
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-51 Score=464.60 Aligned_cols=461 Identities=21% Similarity=0.176 Sum_probs=291.1
Q ss_pred ccccCccccCCCCCcEEECCCCCCCCCC-chhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922 84 AGSISPYIGNLSFLRRLHLDNNNFTHAI-PPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE 162 (581)
Q Consensus 84 ~g~i~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 162 (581)
.+..+..+.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|+|++|.+++.+|..
T Consensus 37 ~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 116 (844)
T 3j0a_A 37 RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116 (844)
T ss_dssp CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTT
T ss_pred CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccC
Confidence 3344455555555566666555443333 445555556666666655555555555555556666666655555444433
Q ss_pred --cCCCCCCCEEECCCCcccccCC-ccCcCCCCCcEEEccCCCCCCcCCCccCCC--CcccccccCCccCCCCCCccccC
Q 035922 163 --FGSLSKIKDLRSFMNNLTGSIP-SSLGNLSSIIRLSLTYNNIARSIPDTLGYL--ENLSFLSLGGNMLSGTIPSSIFN 237 (581)
Q Consensus 163 --l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~p~~l~~ 237 (581)
++++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+..
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh
Confidence 5555556666666555554433 345555566666666555555555555544 55555666666555555554444
Q ss_pred CCC------ccEEEcccccCcccCChhhhcCC--CCCceeecccc------------------------CcceeEeccCC
Q 035922 238 RSS------ITTFSVVLNRMQGNIPLDFGFTL--PNLQHFGIVFN------------------------NFTELLLLNDN 285 (581)
Q Consensus 238 l~~------L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n------------------------~~~~~l~l~~n 285 (581)
+.+ |+.|++++|.+.+..+..+...+ .+++.+.+..+ .-.+.+++++|
T Consensus 197 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n 276 (844)
T 3j0a_A 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG 276 (844)
T ss_dssp SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence 433 66666666655555554443321 23333333211 01244566666
Q ss_pred cCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCC
Q 035922 286 NFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIP 365 (581)
Q Consensus 286 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 365 (581)
.+.+..|..+..+. +|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 277 ~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 277 FVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred cccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 66665555555554 66666666666666666666666666666666666665556666666666666666666665555
Q ss_pred ccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCc----------------------chhcccCCc
Q 035922 366 LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP----------------------QLFGLSSLS 423 (581)
Q Consensus 366 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~----------------------~~~~l~~L~ 423 (581)
..|..+++|++|++++|.+++. + .+++|++|++++|++. .+|. .+..++++
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L- 428 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHL- 428 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC-
T ss_pred hhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCcc-
Confidence 5566666666666666666532 1 1333444444444333 2221 23466777
Q ss_pred ceeEcCCCcccccCCc-cccCCCCCCeeeccCCcCc-----cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCE
Q 035922 424 ISLDLSRNHFTGSLPI-EVGNLKNLGVLDISGNLLS-----GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV 497 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 497 (581)
+.|++++|++++..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|++++..|..|..+++|+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 508 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG 508 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence 7888888888754332 3456788889999998886 344567889999999999999999988999999999999
Q ss_pred EECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922 498 WDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 498 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~ 557 (581)
|++++|++++..|..+. ++|++|++++|++++. +|. .+.+++.+++.|||+.|.+
T Consensus 509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~-~~~--~~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAP-NPD--VFVSLSVLDITHNKFICEC 563 (844)
T ss_dssp EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCC-CSC--CCSSCCEEEEEEECCCCSS
T ss_pred eECCCCCCCccChhhhh--ccccEEECCCCcCCCC-Chh--HhCCcCEEEecCCCccccc
Confidence 99999999987777666 8999999999999997 664 4778999999999999954
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-50 Score=435.69 Aligned_cols=450 Identities=21% Similarity=0.194 Sum_probs=376.1
Q ss_pred CCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEEC
Q 035922 95 SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRS 174 (581)
Q Consensus 95 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 174 (581)
+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46788888888888777778888888888888888888777778888888888888888888777788888888888888
Q ss_pred CCCcccccCCccCcCCCCCcEEEccCCCCCC-cCCCccCCCCcccccccCCccCCCCCCccccCCCCc----cEEEcccc
Q 035922 175 FMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSI----TTFSVVLN 249 (581)
Q Consensus 175 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~~n 249 (581)
++|++++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..+..+++| +.++++.|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 8888886555568888888888888888876 467888888888888888888886666777777777 78888888
Q ss_pred cCcccCChhhhcCCCCCceeeccccCcc----------------------------------------------eeEecc
Q 035922 250 RMQGNIPLDFGFTLPNLQHFGIVFNNFT----------------------------------------------ELLLLN 283 (581)
Q Consensus 250 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~----------------------------------------------~~l~l~ 283 (581)
.+.+..+..+.. .+|+.+++.+|... +.+++.
T Consensus 188 ~l~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 188 PMNFIQPGAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCEECTTTTTT--CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CceecCHHHhcc--CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 887666554432 36777777665211 223334
Q ss_pred CC-cCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccc
Q 035922 284 DN-NFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSG 362 (581)
Q Consensus 284 ~n-~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 362 (581)
.+ .+.+.+|+.+..+. +|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+
T Consensus 266 ~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp ETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred cchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 44 55666777777775 9999999999998 578888888 9999999999998 5665 478999999999999887
Q ss_pred cCCccCCCCCCCcEEeecCcccCCCC--cccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC-c
Q 035922 363 NIPLSVGNLKMLIQLEVSENFLQGTI--PSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP-I 439 (581)
Q Consensus 363 ~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p-~ 439 (581)
..+. ..+++|++|++++|.+++.. |..+..+++|++|++++|.+.+ ++..+..++++ +.|++++|.+++..+ .
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L-~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL-EHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTC-CEEECTTSEEESCTTSC
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCC-CEEEccCCccccccchh
Confidence 6654 67899999999999998654 6778899999999999999984 45558899999 899999999997666 5
Q ss_pred cccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc-ccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922 440 EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY-GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL 518 (581)
Q Consensus 440 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 518 (581)
.+.++++|++|++++|++++..|..+..+++|++|++++|++. +.+|..+..+++|+.|++++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 6889999999999999999889999999999999999999998 578999999999999999999999988999999999
Q ss_pred CCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922 519 LENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 519 L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~ 557 (581)
|++|++++|++++. .|. ...+++|+.+++.+||+.|..
T Consensus 496 L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 496 LQVLNMASNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEeCCCCcCCCC-CHHHhhcccCCcEEEecCCcccCCC
Confidence 99999999999986 554 477899999999999988864
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-49 Score=428.96 Aligned_cols=468 Identities=19% Similarity=0.177 Sum_probs=371.8
Q ss_pred CccccCCCCc----ccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEE
Q 035922 74 FCKWHESLKL----AGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMD 149 (581)
Q Consensus 74 ~c~w~~~~~~----~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 149 (581)
.|.|.+.+.. ...+|+.+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|+.+++|++|+
T Consensus 3 ~C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3666653322 235666553 7899999999999988899999999999999999999988889999999999999
Q ss_pred ccCCcCcccCCcccCCCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCC-CccCCCCcccccccCCccC
Q 035922 150 LSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIP-DTLGYLENLSFLSLGGNML 227 (581)
Q Consensus 150 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l 227 (581)
+++|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|++
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999998888889999999999999999986 467789999999999999999545554 6899999999999999999
Q ss_pred CCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcce----------------eEeccCCcCcccC
Q 035922 228 SGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE----------------LLLLNDNNFGGLI 291 (581)
Q Consensus 228 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~----------------~l~l~~n~l~~~~ 291 (581)
++..|..+..+++|++|+++.|.+. .++..+...+++|+.|++++|.+.. .+++++|.+++..
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 9999999999999999999999875 5566665569999999999887753 3555555555544
Q ss_pred chhhhh---cccCCcEEEccCCcccccC------chhhcCCCCCCEEEeecCcCccc-----ccccccCCCCCCeEeccC
Q 035922 292 PECISN---FSTTLASLFLDNNKIFGSI------PPGIGKLVNLRRLYVWNNKLSGT-----IPSAIGDLQNLRMLGMSG 357 (581)
Q Consensus 292 p~~~~~---~~~~L~~L~L~~n~l~~~~------p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~ 357 (581)
+..+.. ..++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|++|++++
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 433321 1136677777777665421 12234566677777777655421 112223456789999999
Q ss_pred CcccccCCccC-CCCCCCcEEeecCcccCCCCc---ccccCCCCCcEEECCCCcccccCC--cchhcccCCcceeEcCCC
Q 035922 358 NRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIP---SSLCQCKSLIGINFSKNNLSGTIP--PQLFGLSSLSISLDLSRN 431 (581)
Q Consensus 358 n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~~L~Ls~n 431 (581)
|.+. .+|..+ ..+++|++|++++|++++.+| ..+..+++|++|++++|++++..+ ..+..++++ ++|++++|
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N 397 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRN 397 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCC
Confidence 9887 666665 468999999999999987664 346788999999999999974322 457788888 89999999
Q ss_pred cccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccch
Q 035922 432 HFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK 511 (581)
Q Consensus 432 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~ 511 (581)
+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|+.|++++|+++ .+|.
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred CCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence 998 68888888999999999999988 455443 368999999999998643 57889999999999998 6676
Q ss_pred hhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922 512 FLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 512 ~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~ 557 (581)
...+++|++|++++|++++. +|. .+.+++|+.+++++||+.|..
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCC-CTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred -cccCccCCEEecCCCccCCc-CHHHHhcCcccCEEEecCCCccCCC
Confidence 46789999999999999986 665 578889999999999988864
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-48 Score=423.87 Aligned_cols=464 Identities=21% Similarity=0.196 Sum_probs=382.0
Q ss_pred CcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCc
Q 035922 82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPP 161 (581)
Q Consensus 82 ~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 161 (581)
.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|+.+++|++|++++|.+++..+.
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 118 (570)
T 2z63_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118 (570)
T ss_dssp CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC
T ss_pred ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc
Confidence 34455566889999999999999999988888999999999999999999988889999999999999999999976666
Q ss_pred ccCCCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcc----cccccCCccCCCCCCcccc
Q 035922 162 EFGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL----SFLSLGGNMLSGTIPSSIF 236 (581)
Q Consensus 162 ~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L----~~L~l~~n~l~~~~p~~l~ 236 (581)
.++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..++.+++| +++++++|.+++..|..+.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 79999999999999999987 579999999999999999999998888888888888 8899999999966666555
Q ss_pred CCCCccEEEcccccCcccCChhhhcCCC--------------------------------CCceeecccc----------
Q 035922 237 NRSSITTFSVVLNRMQGNIPLDFGFTLP--------------------------------NLQHFGIVFN---------- 274 (581)
Q Consensus 237 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~--------------------------------~L~~L~l~~n---------- 274 (581)
.. +|+.+++++|.............++ .++.+++..+
T Consensus 199 ~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 277 (570)
T 2z63_A 199 EI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277 (570)
T ss_dssp TC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred cC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence 44 7999988876322110000000011 1122222222
Q ss_pred ----CcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCC
Q 035922 275 ----NFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNL 350 (581)
Q Consensus 275 ----~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 350 (581)
.-.+.+++++|.+. .+|..+... +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|
T Consensus 278 ~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L 349 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL 349 (570)
T ss_dssp TGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred hcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence 11144555666655 467777665 8999999999998 5665 5789999999999998876654 688999
Q ss_pred CeEeccCCcccccC--CccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeE
Q 035922 351 RMLGMSGNRFSGNI--PLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLD 427 (581)
Q Consensus 351 ~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~ 427 (581)
++|++++|.+++.. +..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..++++ ++|+
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~ 427 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLD 427 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEE
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCC-CEEe
Confidence 99999999998654 6678899999999999999986544 49999999999999999987666 467889999 8999
Q ss_pred cCCCcccccCCccccCCCCCCeeeccCCcCc-cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 428 LSRNHFTGSLPIEVGNLKNLGVLDISGNLLS-GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 428 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
+++|.+++..|..+..+++|++|++++|+++ +.+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 9999999999999999999999999999998 679999999999999999999999988999999999999999999999
Q ss_pred cccchhhhcCCCCCEEECcCCCCCCCCCCCcccc-CCc--CcccccCCCCCccCC
Q 035922 507 GEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVI-KNS--SATSVMGNSKLCGGI 558 (581)
Q Consensus 507 ~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~-~~l--~~l~~~gN~~lcg~~ 558 (581)
+..|..+..+++|++|++++|++++. +|....+ .-+ ....+.+.+ .|..+
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCS-CPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-TTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCHHHhhcccCCcEEEecCCcccCC-CcchHHHHHHHHhccccCCCch-hhCCC
Confidence 98888899999999999999999998 8865433 111 123455555 77543
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=434.30 Aligned_cols=456 Identities=20% Similarity=0.228 Sum_probs=382.5
Q ss_pred CCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCC-cccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922 93 NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEI-PATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD 171 (581)
Q Consensus 93 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (581)
-.+++++|+|++|.+++..|..|.++++|++|+|++|.+.+.+ |.+|.++++|++|+|++|.+.+..|..|+++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 4578999999999999989999999999999999999766666 789999999999999999999999999999999999
Q ss_pred EECCCCcccccCCcc--CcCCCCCcEEEccCCCCCCcCC-CccCCCCcccccccCCccCCCCCCccccCC--CCccEEEc
Q 035922 172 LRSFMNNLTGSIPSS--LGNLSSIIRLSLTYNNIARSIP-DTLGYLENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSV 246 (581)
Q Consensus 172 L~L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l 246 (581)
|++++|.+++.+|.. +.++++|++|++++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999999877765 9999999999999999988765 579999999999999999998888888877 89999999
Q ss_pred ccccCcccCChhhhcCCC------CCceeeccccCcc----------------eeEecc---------CCcCcccCchhh
Q 035922 247 VLNRMQGNIPLDFGFTLP------NLQHFGIVFNNFT----------------ELLLLN---------DNNFGGLIPECI 295 (581)
Q Consensus 247 ~~n~l~~~~~~~~~~~l~------~L~~L~l~~n~~~----------------~~l~l~---------~n~l~~~~p~~~ 295 (581)
+.|.+.+..+..+.. ++ .|+.|++++|.+. ..+.+. .+.+.+..+..+
T Consensus 182 ~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 182 AANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp CCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 999999888776544 33 3889998888553 122222 122222222233
Q ss_pred hhc-ccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCC
Q 035922 296 SNF-STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKML 374 (581)
Q Consensus 296 ~~~-~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 374 (581)
..+ .++|+.|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 322 2489999999999998889999999999999999999998889999999999999999999998889999999999
Q ss_pred cEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCc---------------
Q 035922 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI--------------- 439 (581)
Q Consensus 375 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~--------------- 439 (581)
+.|++++|.+.+..+..+..+++|++|++++|.+. .++. ++++ +.|++++|+++ .+|.
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~----~~~L-~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l 413 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIHF----IPSI-PDIFLSGNKLV-TLPKINLTANLIHLSENRL 413 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC-CCSS----CCSC-SEEEEESCCCC-CCCCCCTTCCEEECCSCCC
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC-cccC----CCCc-chhccCCCCcc-cccccccccceeecccCcc
Confidence 99999999999888888999999999999999998 3332 4445 55666655554 2222
Q ss_pred -------cccCCCCCCeeeccCCcCccccCc-cccCCCCCcEEECCCCcCc-----ccCcccccCCCCCCEEECCCCccc
Q 035922 440 -------EVGNLKNLGVLDISGNLLSGEIPI-SLGSCTSLEKLLMQGNKFY-----GPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 440 -------~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
.+.++++|++|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++|+.|++++|.++
T Consensus 414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 493 (844)
T 3j0a_A 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493 (844)
T ss_dssp CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence 244788999999999999854433 3566899999999999987 445567889999999999999999
Q ss_pred cccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCC
Q 035922 507 GEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP 559 (581)
Q Consensus 507 ~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~ 559 (581)
+.+|..+..+++|++|++++|++++. |.....++|+.+++++|. +.+.+|
T Consensus 494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~~~L~~L~Ls~N~-l~~~~~ 543 (844)
T 3j0a_A 494 SLPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLEILDISRNQ-LLAPNP 543 (844)
T ss_dssp TCCTTSSSSCCSCSEEEEESCCCSSC--CCCCCCSCCCEEEEEEEC-CCCCCS
T ss_pred ccChhHccchhhhheeECCCCCCCcc--ChhhhhccccEEECCCCc-CCCCCh
Confidence 99999999999999999999999984 444444899999999997 555544
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.1e-50 Score=437.34 Aligned_cols=425 Identities=18% Similarity=0.227 Sum_probs=334.6
Q ss_pred CCCcccccCccccCCCCCcEEECCCCCC------CC------CCchhccCCCCCCEEEccCCCCCCCCcccCcCC-----
Q 035922 80 SLKLAGSISPYIGNLSFLRRLHLDNNNF------TH------AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC----- 142 (581)
Q Consensus 80 ~~~~~g~i~~~~~~l~~L~~L~Ls~n~l------~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l----- 142 (581)
..++.|.+|+.++++++|++|+|++|.+ .+ .+|... +..|+ ++++++.+.+.+|..++.+
T Consensus 90 ~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp TSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHh
Confidence 5678999999999999999999999976 22 334333 44555 6666666666655554411
Q ss_pred --------------CCCCEEEcc--CCcCcccCCcccCCCCCCCEEECCCCccccc-----------------CCccCc-
Q 035922 143 --------------SNIILMDLS--VNQLLGNIPPEFGSLSKIKDLRSFMNNLTGS-----------------IPSSLG- 188 (581)
Q Consensus 143 --------------~~L~~L~Ls--~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~- 188 (581)
..++.+.+. +|.+++ +|..++++++|++|++++|.+++. +|..++
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~ 245 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhh
Confidence 112222222 466666 677777777777777777777764 777777
Q ss_pred -CCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCcc-CCC-CCCccccCC------CCccEEEcccccCcccCCh--
Q 035922 189 -NLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNM-LSG-TIPSSIFNR------SSITTFSVVLNRMQGNIPL-- 257 (581)
Q Consensus 189 -~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~-- 257 (581)
++++|++|++++|.+.+.+|..++++++|++|++++|+ ++| .+|..++.+ ++|++|++++|.+. .+|.
T Consensus 246 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~ 324 (636)
T 4eco_A 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVET 324 (636)
T ss_dssp GGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHH
T ss_pred cccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchh
Confidence 77777777777777777777777777777777777777 776 677766665 77777777777777 6666
Q ss_pred hhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCC-CCEEEeecCcC
Q 035922 258 DFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVN-LRRLYVWNNKL 336 (581)
Q Consensus 258 ~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l 336 (581)
.+.. +++|+.|++++ |.++|.+| .+..+. +|++|++++|.++ .+|..+..+++ |++|++++|++
T Consensus 325 ~l~~-l~~L~~L~L~~-----------N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 325 SLQK-MKKLGMLECLY-----------NQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp HHTT-CTTCCEEECCS-----------CCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred hhcc-CCCCCEEeCcC-----------CcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 4443 67776655544 34455566 555554 8999999999998 78888999999 99999999999
Q ss_pred cccccccccCCC--CCCeEeccCCcccccCCccCC-------CCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922 337 SGTIPSAIGDLQ--NLRMLGMSGNRFSGNIPLSVG-------NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN 407 (581)
Q Consensus 337 ~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~ 407 (581)
+ .+|..+..++ +|++|++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|++|++++|+
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 9 7888777654 899999999999998888888 78899999999999995444445669999999999999
Q ss_pred ccccCCcchhccc--------CCcceeEcCCCcccccCCcccc--CCCCCCeeeccCCcCccccCccccCCCCCcEEEC-
Q 035922 408 LSGTIPPQLFGLS--------SLSISLDLSRNHFTGSLPIEVG--NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLM- 476 (581)
Q Consensus 408 l~~~~p~~~~~l~--------~L~~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L- 476 (581)
+. .+|..++... ++ +.|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|++
T Consensus 469 l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 469 LT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 99 7887665533 77 89999999999 7888887 99999999999999996 8999999999999999
Q ss_pred -----CCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 477 -----QGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 477 -----s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
++|++.+.+|..+..+++|+.|++++|.+ +.+|..+. ++|++|++++|++...
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 56888899999999999999999999999 67888765 8999999999988753
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-47 Score=410.46 Aligned_cols=448 Identities=20% Similarity=0.173 Sum_probs=372.4
Q ss_pred ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922 86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS 165 (581)
Q Consensus 86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (581)
.+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--c
Confidence 4666555 89999999999999888889999999999999999999888899999999999999999998 46655 8
Q ss_pred CCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcc--cccccCCccC--CCCCCccccCCC-
Q 035922 166 LSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL--SFLSLGGNML--SGTIPSSIFNRS- 239 (581)
Q Consensus 166 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~- 239 (581)
+++|++|++++|++++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~ 165 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccccc
Confidence 9999999999999987 578899999999999999999976 356677777 9999999999 778888887765
Q ss_pred CccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchh
Q 035922 240 SITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPG 319 (581)
Q Consensus 240 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~ 319 (581)
....++++.|.+.+.++......+++|+.+++++|... .....+.+.+| .+..+. +|+.|++++|.+.+..+..
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~~~-~l~~l~-~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED----NKCSYFLSILA-KLQTNP-KLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST----TTTHHHHHHHH-GGGGCT-TCCEEEEEEEEEEHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccc----cccceeecchh-hhcccc-chhhccccccccCHHHHHH
Confidence 45567788888888888777667888888888776411 00011334444 556665 8999999999887653322
Q ss_pred hc---CCCCCCEEEeecCcCcccccccc-----cCCCCCCeEeccCCcccccCC-ccCCCC---CCCcEEeecCcccCCC
Q 035922 320 IG---KLVNLRRLYVWNNKLSGTIPSAI-----GDLQNLRMLGMSGNRFSGNIP-LSVGNL---KMLIQLEVSENFLQGT 387 (581)
Q Consensus 320 l~---~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~l---~~L~~L~L~~n~l~~~ 387 (581)
+. ..++|++|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+...
T Consensus 240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc
Confidence 21 24689999999999999999888 8999999999999998 455 344333 6799999999998754
Q ss_pred CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc--cCCccccCCCCCCeeeccCCcCccccCcc-
Q 035922 388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG--SLPIEVGNLKNLGVLDISGNLLSGEIPIS- 464 (581)
Q Consensus 388 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~- 464 (581)
. ....+++|++|++++|++.+.+|..+..++++ +.|++++|++++ .+|..+..+++|++|++++|++++.+|..
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 2 12688999999999999998899999999999 899999999996 56778999999999999999999757754
Q ss_pred ccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC--ccccCC
Q 035922 465 LGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT--EGVIKN 542 (581)
Q Consensus 465 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~--~~~~~~ 542 (581)
+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|. ...+++
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~ 469 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS--VPDGIFDRLTS 469 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTT
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc--cCHHHhccCCc
Confidence 88899999999999999988887664 79999999999999 788888899999999999999985 665 467888
Q ss_pred cCcccccCCCCCccC
Q 035922 543 SSATSVMGNSKLCGG 557 (581)
Q Consensus 543 l~~l~~~gN~~lcg~ 557 (581)
|+.+++++||+.|..
T Consensus 470 L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCEEECCSSCBCCCH
T ss_pred ccEEECcCCCCcccC
Confidence 999999999998853
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.2e-47 Score=405.66 Aligned_cols=427 Identities=22% Similarity=0.231 Sum_probs=360.5
Q ss_pred CcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcc-cCC
Q 035922 82 KLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG-NIP 160 (581)
Q Consensus 82 ~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p 160 (581)
.+.+..|..+.++++|++|+|++|.+++..|+.|+++++|++|+|++|.++ .+|.. .+++|++|++++|.+++ .+|
T Consensus 32 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p 108 (520)
T 2z7x_B 32 YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPIC 108 (520)
T ss_dssp CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCC
T ss_pred cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccch
Confidence 345555568999999999999999999888999999999999999999999 67766 89999999999999997 578
Q ss_pred cccCCCCCCCEEECCCCcccccCCccCcCCCCC--cEEEccCCCC--CCcCCCccCCCC-cccccccCCccCCCCCCc-c
Q 035922 161 PEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI--IRLSLTYNNI--ARSIPDTLGYLE-NLSFLSLGGNMLSGTIPS-S 234 (581)
Q Consensus 161 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~-~ 234 (581)
..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.++. .
T Consensus 109 ~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 185 (520)
T 2z7x_B 109 KEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185 (520)
T ss_dssp GGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCC
T ss_pred hhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhh
Confidence 999999999999999999986 356777788 9999999999 888888887776 345678899998877765 4
Q ss_pred ccCCCCccEEEccccc-------CcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEc
Q 035922 235 IFNRSSITTFSVVLNR-------MQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFL 307 (581)
Q Consensus 235 l~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L 307 (581)
+..+++|+.+++++|. +.+.++ .+. .+++|+.|++..|.+.. +.+.+..+ ... . ++|++|++
T Consensus 186 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~l~~------~~~~~~~~-~~~-~-~~L~~L~l 254 (520)
T 2z7x_B 186 VKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNLTLNNIETTW------NSFIRILQ-LVW-H-TTVWYFSI 254 (520)
T ss_dssp CTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEEEEEEEEEEH------HHHHHHHH-HHH-T-SSCSEEEE
T ss_pred hhcccceeeccccccccccccceeecchh-hhc-cccchhhccccccccCH------HHHHHHHH-Hhh-h-CcccEEEe
Confidence 6688999999999987 666555 444 38999999887765431 12222111 111 1 48999999
Q ss_pred cCCcccccCchhh-----cCCCCCCEEEeecCcCccccc-ccccCC---CCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922 308 DNNKIFGSIPPGI-----GKLVNLRRLYVWNNKLSGTIP-SAIGDL---QNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378 (581)
Q Consensus 308 ~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 378 (581)
++|.+++.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|+
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 9999999999988 8999999999999998 455 444444 67999999999987432 126889999999
Q ss_pred ecCcccCCCCcccccCCCCCcEEECCCCcccc--cCCcchhcccCCcceeEcCCCcccccCCcc-ccCCCCCCeeeccCC
Q 035922 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSG--TIPPQLFGLSSLSISLDLSRNHFTGSLPIE-VGNLKNLGVLDISGN 455 (581)
Q Consensus 379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n 455 (581)
+++|++++.+|..+..+++|++|++++|++.+ .+|..+..++++ +.|++++|++++.+|.. +..+++|++|++++|
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 99999999899999999999999999999986 667888999999 89999999999867764 788999999999999
Q ss_pred cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccch-hhhcCCCCCEEECcCCCCCCCCC
Q 035922 456 LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNLSYNDLGARYV 534 (581)
Q Consensus 456 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~ls~N~l~~~~i 534 (581)
++++.+|..+. ++|+.|++++|++. .+|..+..+++|+.|++++|+++. +|. .+..+++|++|++++|++++. .
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~-c 484 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS-C 484 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC-H
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc-C
Confidence 99988887664 79999999999998 788888899999999999999995 555 499999999999999999986 5
Q ss_pred C
Q 035922 535 P 535 (581)
Q Consensus 535 p 535 (581)
+
T Consensus 485 ~ 485 (520)
T 2z7x_B 485 P 485 (520)
T ss_dssp H
T ss_pred C
Confidence 5
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.3e-47 Score=423.22 Aligned_cols=425 Identities=19% Similarity=0.255 Sum_probs=347.3
Q ss_pred CCCcccccCccccCCCCCcEEEC-CCCCCCCCCchhc-------------------------------------------
Q 035922 80 SLKLAGSISPYIGNLSFLRRLHL-DNNNFTHAIPPEI------------------------------------------- 115 (581)
Q Consensus 80 ~~~~~g~i~~~~~~l~~L~~L~L-s~n~l~~~~p~~l------------------------------------------- 115 (581)
..++.|.+|+.++++++|++|+| ++|.++|..|...
T Consensus 332 ~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred cCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 46688999999999999999999 8887665522110
Q ss_pred --------cCCCCCCEEEccC--CCCCCCCcccCcCCCCCCEEEccCCcCcc-----------------cCCcccC--CC
Q 035922 116 --------GRLRRLRGLTLNN--NSIGGEIPATMSRCSNIILMDLSVNQLLG-----------------NIPPEFG--SL 166 (581)
Q Consensus 116 --------~~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l 166 (581)
.....++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|+.++ ++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L 490 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred ccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC
Confidence 1122333333433 77776 88899999999999999999988 3888887 99
Q ss_pred CCCCEEECCCCcccccCCccCcCCCCCcEEEccCCC-CCC-cCCCccCCCC-------cccccccCCccCCCCCCc--cc
Q 035922 167 SKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNN-IAR-SIPDTLGYLE-------NLSFLSLGGNMLSGTIPS--SI 235 (581)
Q Consensus 167 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~p~--~l 235 (581)
++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .+
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l 569 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASL 569 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHH
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhh
Confidence 999999999999999999999999999999999998 887 7777665554 9999999999999 8888 89
Q ss_pred cCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccC-CcEEEccCCcccc
Q 035922 236 FNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTT-LASLFLDNNKIFG 314 (581)
Q Consensus 236 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~-L~~L~L~~n~l~~ 314 (581)
.++++|+.|++++|.+. .+| .+. .+++|+.|++++|. ++ .+|..+..+. + |+.|++++|.++
T Consensus 570 ~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~-----------l~-~lp~~l~~l~-~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVR-HLE-AFG-TNVKLTDLKLDYNQ-----------IE-EIPEDFCAFT-DQVEGLGFSHNKLK- 632 (876)
T ss_dssp TTCTTCCEEECTTSCCC-BCC-CCC-TTSEESEEECCSSC-----------CS-CCCTTSCEEC-TTCCEEECCSSCCC-
T ss_pred hcCCCCCEEECCCCCcc-cch-hhc-CCCcceEEECcCCc-----------cc-cchHHHhhcc-ccCCEEECcCCCCC-
Confidence 99999999999999988 777 433 37777776665554 44 5777777776 6 999999999998
Q ss_pred cCchhhcCCCC--CCEEEeecCcCccccccc---cc--CCCCCCeEeccCCcccccCCccC-CCCCCCcEEeecCcccCC
Q 035922 315 SIPPGIGKLVN--LRRLYVWNNKLSGTIPSA---IG--DLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQG 386 (581)
Q Consensus 315 ~~p~~l~~l~~--L~~L~L~~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~ 386 (581)
.+|..+..++. |+.|++++|++++.+|.. +. .+++|+.|++++|.++ .+|..+ ..+++|+.|++++|+++
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-
Confidence 77887776654 999999999998766532 22 3458999999999998 566554 47899999999999998
Q ss_pred CCcccccCC--------CCCcEEECCCCcccccCCcchh--cccCCcceeEcCCCcccccCCccccCCCCCCeeeccC--
Q 035922 387 TIPSSLCQC--------KSLIGINFSKNNLSGTIPPQLF--GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG-- 454 (581)
Q Consensus 387 ~~p~~l~~l--------~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-- 454 (581)
.+|..+... ++|++|++++|++. .+|..+. .+++| +.|++++|++++ +|..+..+++|+.|+|++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 666554432 38999999999999 8898887 89999 899999999996 898999999999999976
Q ss_pred ----CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922 455 ----NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530 (581)
Q Consensus 455 ----n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 530 (581)
|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.||+++|++....+..+.....+..+.+.+|++.
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 888889999999999999999999999 68898765 69999999999998777777766667778888888765
Q ss_pred C
Q 035922 531 A 531 (581)
Q Consensus 531 ~ 531 (581)
.
T Consensus 865 ~ 865 (876)
T 4ecn_A 865 D 865 (876)
T ss_dssp E
T ss_pred c
Confidence 3
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.4e-46 Score=404.87 Aligned_cols=441 Identities=18% Similarity=0.186 Sum_probs=371.3
Q ss_pred CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcc-cC
Q 035922 81 LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG-NI 159 (581)
Q Consensus 81 ~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~ 159 (581)
..+.+..|..+.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ..
T Consensus 36 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 115 (549)
T 2z81_A 36 NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115 (549)
T ss_dssp SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS
T ss_pred CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch
Confidence 34556667789999999999999999999888999999999999999999998888889999999999999999986 46
Q ss_pred CcccCCCCCCCEEECCCCcccccCC-ccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccc-cC
Q 035922 160 PPEFGSLSKIKDLRSFMNNLTGSIP-SSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSI-FN 237 (581)
Q Consensus 160 p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~ 237 (581)
|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|++|++++|.+. .+|..+ ..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~ 194 (549)
T 2z81_A 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADI 194 (549)
T ss_dssp SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHS
T ss_pred hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhh
Confidence 7789999999999999999555665 67999999999999999999999999999999999999999986 555544 46
Q ss_pred CCCccEEEcccccCcccC--ChhhhcCCCCCceeeccccCcc-----------------eeEeccCCcCcccC------c
Q 035922 238 RSSITTFSVVLNRMQGNI--PLDFGFTLPNLQHFGIVFNNFT-----------------ELLLLNDNNFGGLI------P 292 (581)
Q Consensus 238 l~~L~~L~l~~n~l~~~~--~~~~~~~l~~L~~L~l~~n~~~-----------------~~l~l~~n~l~~~~------p 292 (581)
+++|++|++++|.+.+.. +..+...+++|+.|++.+|.+. +.+++++|.+.+.. .
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 274 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence 899999999999998742 3333445788999998887654 55777777766531 1
Q ss_pred hhhhhcccCCcEEEccCCccccc-----CchhhcCCCCCCEEEeecCcCcccccccc-cCCCCCCeEeccCCcccccCC-
Q 035922 293 ECISNFSTTLASLFLDNNKIFGS-----IPPGIGKLVNLRRLYVWNNKLSGTIPSAI-GDLQNLRMLGMSGNRFSGNIP- 365 (581)
Q Consensus 293 ~~~~~~~~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~- 365 (581)
..+..+ ++++.|++.++.+... ++......++|++|++++|+++ .+|..+ ..+++|++|++++|.+++.+|
T Consensus 275 ~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~ 352 (549)
T 2z81_A 275 DVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK 352 (549)
T ss_dssp TCCCCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHH
T ss_pred hhhhhh-cccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccccc
Confidence 122333 3899999999876532 2333445678999999999998 667665 579999999999999998664
Q ss_pred --ccCCCCCCCcEEeecCcccCCCCc--ccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccc
Q 035922 366 --LSVGNLKMLIQLEVSENFLQGTIP--SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEV 441 (581)
Q Consensus 366 --~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l 441 (581)
..++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..++++ ++|++++|+++ .+|..+
T Consensus 353 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~-~l~~~~ 429 (549)
T 2z81_A 353 NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIR-VVKTCI 429 (549)
T ss_dssp HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCS-CCCTTS
T ss_pred chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcc-cccchh
Confidence 347889999999999999986532 45888999999999999999 789999899999 89999999998 455544
Q ss_pred cCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCE
Q 035922 442 GNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLEN 521 (581)
Q Consensus 442 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 521 (581)
.++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++.+|+.+..+++|++
T Consensus 430 --~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 501 (549)
T 2z81_A 430 --PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501 (549)
T ss_dssp --CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred --cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence 368999999999998643 57899999999999998 6776 578999999999999999999999999999999
Q ss_pred EECcCCCCCCCCCCC
Q 035922 522 VNLSYNDLGARYVPT 536 (581)
Q Consensus 522 L~ls~N~l~~~~ip~ 536 (581)
|++++|++.+. +|.
T Consensus 502 L~l~~N~~~~~-~~~ 515 (549)
T 2z81_A 502 IWLHTNPWDCS-CPR 515 (549)
T ss_dssp EECCSSCBCCC-HHH
T ss_pred EEecCCCccCC-Ccc
Confidence 99999999988 774
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-45 Score=401.58 Aligned_cols=460 Identities=20% Similarity=0.165 Sum_probs=342.9
Q ss_pred ccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCC
Q 035922 86 SISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGS 165 (581)
Q Consensus 86 ~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 165 (581)
.||+.+. +++++|||++|.|++..+.+|.++++|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.+
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 3554442 47899999999999888889999999999999999999887889999999999999999999887888999
Q ss_pred CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCC-cCCCccCCCCcccccccCCccCCCCCCccccCCCC----
Q 035922 166 LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIAR-SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSS---- 240 (581)
Q Consensus 166 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~---- 240 (581)
+++|++|++++|++++..+..|+++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999999997777789999999999999999976 46788899999999999999999777766654433
Q ss_pred ccEEEcccccCcccCChhhhcCCCCCceeeccccCcc-------------------------------------------
Q 035922 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFT------------------------------------------- 277 (581)
Q Consensus 241 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~------------------------------------------- 277 (581)
...++++.|.+....+..+. ...++.+++..|...
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 280 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 280 (635)
T ss_dssp CCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred hhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence 33566666666533222111 122233333322111
Q ss_pred -eeEeccCCc---CcccCchhhhhcc---------------------cCCcEEEccCCcccccCchhhcCCCCCCEEEee
Q 035922 278 -ELLLLNDNN---FGGLIPECISNFS---------------------TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW 332 (581)
Q Consensus 278 -~~l~l~~n~---l~~~~p~~~~~~~---------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 332 (581)
....+..+. ....++..+.... ..++.|++.+|.+.+..+ ..++.|+.+++.
T Consensus 281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~ 357 (635)
T 4g8a_A 281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFT 357 (635)
T ss_dssp SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEE
T ss_pred hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhhhcccc
Confidence 000000000 0001111111111 234444444444432221 123445555555
Q ss_pred cCcCcccccccccCCCCCCeEeccCCcccc--cCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccc
Q 035922 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSG--NIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410 (581)
Q Consensus 333 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 410 (581)
+|..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.... .+..+..+++|+.++++++....
T Consensus 358 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 358 SNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp SCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEES
T ss_pred cccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccc
Confidence 5544422 123457788888888887653 344455667788888888887664 34567788999999999988775
Q ss_pred cCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcC-ccccCccccCCCCCcEEECCCCcCcccCccc
Q 035922 411 TIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLL-SGEIPISLGSCTSLEKLLMQGNKFYGPIPSS 488 (581)
Q Consensus 411 ~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 488 (581)
..+ ..+..+..+ +.++++.|.+.+..+..+..++.++.|++++|.+ .+..|..+..+++|++|+|++|++.+..|..
T Consensus 435 ~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 554 356677788 8999999999988898999999999999999975 4467888999999999999999999999999
Q ss_pred ccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-cccc-CCcCcccccCCCCCccC
Q 035922 489 LRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVI-KNSSATSVMGNSKLCGG 557 (581)
Q Consensus 489 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~-~~l~~l~~~gN~~lcg~ 557 (581)
|+++++|+.|+|++|++++..|..|..+++|++|++++|++++. .|. ...+ .+|+.++++|||+.|.+
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBC-CSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCC-CHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999999997 664 3444 68999999999999964
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.9e-44 Score=385.82 Aligned_cols=443 Identities=19% Similarity=0.173 Sum_probs=338.8
Q ss_pred cCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCC
Q 035922 87 ISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSL 166 (581)
Q Consensus 87 i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 166 (581)
+|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|.+|+.+++|++|++++|.++ .+|.. .+
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l 120 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PM 120 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CC
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--cc
Confidence 555443 78888888888888777788888888888888888888777888888888888888888888 45555 78
Q ss_pred CCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcc--cccccCCccC--CCCCCccccCCC-C
Q 035922 167 SKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENL--SFLSLGGNML--SGTIPSSIFNRS-S 240 (581)
Q Consensus 167 ~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~-~ 240 (581)
++|++|++++|++++ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+..+. .
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~ 197 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcc
Confidence 888888888888886 3467888888888888888888753 34445555 8888888888 777777776654 2
Q ss_pred ccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccccc----C
Q 035922 241 ITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS----I 316 (581)
Q Consensus 241 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~ 316 (581)
...++++.|.+.+.++......+++|+.+++++|...- ..+.+. ...+.... .|+.++++++.+.+. +
T Consensus 198 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~------~~l~~~-~~~l~~l~-~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC------QRLMTF-LSELTRGP-TLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp EEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH------HHHHHH-HHHHHSCS-SCEEEEEEEEEECHHHHHHH
T ss_pred eEEEEecCccchhhhhhhcccccceEEEeccccccccc------chHHHH-HHHHhccC-cceEEEecCCcCcHHHHHHH
Confidence 22557777887777776666567777777776654110 001111 12344443 788888877766543 2
Q ss_pred chhhcCCCCCCEEEeecCcCcccccccc-----cCCCCCCeEeccCCcccccCCc-cCCC---CCCCcEEeecCcccCCC
Q 035922 317 PPGIGKLVNLRRLYVWNNKLSGTIPSAI-----GDLQNLRMLGMSGNRFSGNIPL-SVGN---LKMLIQLEVSENFLQGT 387 (581)
Q Consensus 317 p~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~-~~~~---l~~L~~L~L~~n~l~~~ 387 (581)
+..+ ..++|++|++++|+++|.+|..+ ..++.|+.++++.+.+ .+|. .+.. ..+|++|++++|.+...
T Consensus 270 ~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~ 346 (562)
T 3a79_B 270 FQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM 346 (562)
T ss_dssp HHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc
Confidence 2222 34589999999999988888777 6666666667766665 3342 2211 25799999999987643
Q ss_pred CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc--cCCccccCCCCCCeeeccCCcCccccCc-c
Q 035922 388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG--SLPIEVGNLKNLGVLDISGNLLSGEIPI-S 464 (581)
Q Consensus 388 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~ 464 (581)
. ....+++|++|++++|++.+.+|..+..++++ +.|++++|++++ .+|..+.++++|++|++++|++++.+|. .
T Consensus 347 ~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 347 V--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred c--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh
Confidence 2 12678999999999999998899999999999 899999999996 3456788999999999999999975665 4
Q ss_pred ccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC--ccccCC
Q 035922 465 LGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT--EGVIKN 542 (581)
Q Consensus 465 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~--~~~~~~ 542 (581)
+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|. ...+++
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~ 498 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS--VPDGVFDRLTS 498 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC--CCTTSTTTCTT
T ss_pred hcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC--CCHHHHhcCCC
Confidence 78899999999999999988776654 79999999999998 677777799999999999999995 665 567888
Q ss_pred cCcccccCCCCCcc
Q 035922 543 SSATSVMGNSKLCG 556 (581)
Q Consensus 543 l~~l~~~gN~~lcg 556 (581)
|+.+++++||+.|.
T Consensus 499 L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 499 LQYIWLHDNPWDCT 512 (562)
T ss_dssp CCCEECCSCCBCCC
T ss_pred CCEEEecCCCcCCC
Confidence 99999999999985
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.9e-44 Score=386.25 Aligned_cols=428 Identities=19% Similarity=0.173 Sum_probs=345.9
Q ss_pred CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcc-cC
Q 035922 81 LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLG-NI 159 (581)
Q Consensus 81 ~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~ 159 (581)
..+.+..+..+.++++|++|+|++|.+++..|+.|.++++|++|+|++|.++ .+|.. .+++|++|++++|.+++ .+
T Consensus 62 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~ 138 (562)
T 3a79_B 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPV 138 (562)
T ss_dssp SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCc
Confidence 3455555678999999999999999999988999999999999999999999 67766 89999999999999987 45
Q ss_pred CcccCCCCCCCEEECCCCcccccCCccCcCCCCC--cEEEccCCCC--CCcCCCccCCCC--cccccccCCccCCCCCCc
Q 035922 160 PPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSI--IRLSLTYNNI--ARSIPDTLGYLE--NLSFLSLGGNMLSGTIPS 233 (581)
Q Consensus 160 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~l~~n~l--~~~~p~~l~~l~--~L~~L~l~~n~l~~~~p~ 233 (581)
|..++++++|++|++++|++++. .+..+++| ++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++.
T Consensus 139 p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVN 214 (562)
T ss_dssp CGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCE
T ss_pred hHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhh
Confidence 68999999999999999999864 34555555 9999999999 888888887765 33 568889998876665
Q ss_pred c-ccCCCCccEEEcccccC-----cccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEc
Q 035922 234 S-IFNRSSITTFSVVLNRM-----QGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFL 307 (581)
Q Consensus 234 ~-l~~l~~L~~L~l~~n~l-----~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L 307 (581)
. +..+++|+.+++++|.. .+.+ ..+ ..+++++.+++..+.+ .++.+.+.. +.+. . ++|++|++
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l-~~l~~L~~L~L~~~~l------~~~~~~~~~-~~~~-~-~~L~~L~l 283 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFL-SEL-TRGPTLLNVTLQHIET------TWKCSVKLF-QFFW-P-RPVEYLNI 283 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHH-HHH-HSCSSCEEEEEEEEEE------CHHHHHHHH-HHHT-T-SSEEEEEE
T ss_pred hcccccceEEEecccccccccchHHHHH-HHH-hccCcceEEEecCCcC------cHHHHHHHH-Hhhh-c-ccccEEEE
Confidence 3 55778999999998852 1111 222 2478888888766543 233333222 2222 1 38999999
Q ss_pred cCCcccccCchhh-----cCCCCCCEEEeecCcCccccc-cccc---CCCCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922 308 DNNKIFGSIPPGI-----GKLVNLRRLYVWNNKLSGTIP-SAIG---DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378 (581)
Q Consensus 308 ~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 378 (581)
++|.+++.+|..+ ..++.|+.++++.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|+
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 9999999999877 6677777777777766 334 2222 2267999999999986322 126789999999
Q ss_pred ecCcccCCCCcccccCCCCCcEEECCCCcccc--cCCcchhcccCCcceeEcCCCcccccCCc-cccCCCCCCeeeccCC
Q 035922 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSG--TIPPQLFGLSSLSISLDLSRNHFTGSLPI-EVGNLKNLGVLDISGN 455 (581)
Q Consensus 379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n 455 (581)
+++|.+++.+|..+..+++|++|++++|++.+ .+|..+..++++ +.|++++|++++.+|. .+..+++|++|++++|
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence 99999999899999999999999999999985 345678899999 8999999999985665 4788999999999999
Q ss_pred cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchh-hhcCCCCCEEECcCCCCCCCCC
Q 035922 456 LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKF-LAGFKLLENVNLSYNDLGARYV 534 (581)
Q Consensus 456 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~i 534 (581)
++++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +|.. +..+++|++|++++|++.+. .
T Consensus 439 ~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~-c 513 (562)
T 3a79_B 439 MLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT-C 513 (562)
T ss_dssp CCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC-H
T ss_pred CCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC-c
Confidence 99988877654 79999999999998 688777799999999999999995 5555 99999999999999999987 6
Q ss_pred CC
Q 035922 535 PT 536 (581)
Q Consensus 535 p~ 536 (581)
|.
T Consensus 514 ~~ 515 (562)
T 3a79_B 514 PG 515 (562)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-43 Score=372.43 Aligned_cols=375 Identities=18% Similarity=0.169 Sum_probs=269.7
Q ss_pred CCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCC-cccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922 95 SFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEI-PATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR 173 (581)
Q Consensus 95 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 173 (581)
++|++|+|++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 67788888888888777778888888888888888876544 45678888888888888888877777888888888888
Q ss_pred CCCCcccccCCcc--CcCCCCCcEEEccCCCCCCcCCCc-cCCCCcccccccCCccCCCCCCccccCC--CCccEEEccc
Q 035922 174 SFMNNLTGSIPSS--LGNLSSIIRLSLTYNNIARSIPDT-LGYLENLSFLSLGGNMLSGTIPSSIFNR--SSITTFSVVL 248 (581)
Q Consensus 174 L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~ 248 (581)
+++|++++.+|.. +..+++|++|++++|.+++..|.. +.++++|++|++++|++++..+..+..+ .+++.++++.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 8888887655544 777888888888888887776655 6777788888888887776666555443 3444444444
Q ss_pred ccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCE
Q 035922 249 NRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRR 328 (581)
Q Consensus 249 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 328 (581)
|.+.+..+..+.. .....+..+++|++
T Consensus 190 n~l~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 190 ITLQDMNEYWLGW-----------------------------------------------------EKCGNPFKNTSITT 216 (455)
T ss_dssp CBCTTCSTTCTTH-----------------------------------------------------HHHCCTTTTCEEEE
T ss_pred Ccccccchhhccc-----------------------------------------------------cccccccccceeee
Confidence 4433211110000 00001223455666
Q ss_pred EEeecCcCcccccccccCC---CCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccccc--CCCCCcEEEC
Q 035922 329 LYVWNNKLSGTIPSAIGDL---QNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC--QCKSLIGINF 403 (581)
Q Consensus 329 L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l 403 (581)
|++++|++++..|..+... ++|+.|++++|...+.... .+.+.+..+..+. ..++|++|++
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l 282 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDL 282 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred EecCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEe
Confidence 6666666665555544332 5666677766655432110 1111111111111 2467888888
Q ss_pred CCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922 404 SKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483 (581)
Q Consensus 404 s~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 483 (581)
++|.+.+..|..+..++++ +.|++++|++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++.+
T Consensus 283 ~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 283 SKSKIFALLKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp CSSCCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred cCccccccchhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 8888887778888888888 888888888887778888889999999999999987778888999999999999999998
Q ss_pred cCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCcc
Q 035922 484 PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEG 538 (581)
Q Consensus 484 ~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~ 538 (581)
..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++++. +|...
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~ 415 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRID 415 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-TTTTH
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC-CCcch
Confidence 8888999999999999999999987777789999999999999999988 88543
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.2e-42 Score=375.70 Aligned_cols=441 Identities=23% Similarity=0.224 Sum_probs=358.1
Q ss_pred cccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcc
Q 035922 83 LAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPE 162 (581)
Q Consensus 83 ~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 162 (581)
+.+..+.+|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++..+.+|.++++|++|++++|.+++..+..
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence 44444457999999999999999999888889999999999999999999777788999999999999999999877778
Q ss_pred cCCCCCCCEEECCCCcccc-cCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccc----ccccCCccCCCCCCccccC
Q 035922 163 FGSLSKIKDLRSFMNNLTG-SIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLS----FLSLGGNMLSGTIPSSIFN 237 (581)
Q Consensus 163 l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~l~~n~l~~~~p~~l~~ 237 (581)
|+++++|++|++++|.+++ .+|..++.+++|++|++++|++++..+..+..+.+++ .++++.|.++ .++.....
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~ 222 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 222 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc
Confidence 9999999999999999976 4688899999999999999999988888777665544 5678888887 34444444
Q ss_pred CCCccEEEcccccCcccCChhh---------------------------------------------------------h
Q 035922 238 RSSITTFSVVLNRMQGNIPLDF---------------------------------------------------------G 260 (581)
Q Consensus 238 l~~L~~L~l~~n~l~~~~~~~~---------------------------------------------------------~ 260 (581)
...+..+++..|.....++... .
T Consensus 223 ~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 302 (635)
T 4g8a_A 223 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF 302 (635)
T ss_dssp TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTT
T ss_pred chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhh
Confidence 4445555555443221111110 1
Q ss_pred cCCCCCceeeccccCcc-----------eeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEE
Q 035922 261 FTLPNLQHFGIVFNNFT-----------ELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL 329 (581)
Q Consensus 261 ~~l~~L~~L~l~~n~~~-----------~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 329 (581)
..+.+++.+.+..+.+. +.+++.+|.+.+..+..+ ..|+.+++..|.+.... ....+++|+.+
T Consensus 303 ~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~~n~~~~~~--~~~~l~~L~~L 376 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFTSNKGGNAF--SEVDLPSLEFL 376 (635)
T ss_dssp GGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEESCCSCCBC--CCCBCTTCCEE
T ss_pred hhhcccccccccccccccccccccchhhhhhhcccccccCcCcccc----hhhhhcccccccCCCCc--ccccccccccc
Confidence 11234444444444332 456666666655443322 37899999999876443 34578999999
Q ss_pred EeecCcCc--ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCc-ccccCCCCCcEEECCCC
Q 035922 330 YVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIP-SSLCQCKSLIGINFSKN 406 (581)
Q Consensus 330 ~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n 406 (581)
++++|.+. +..+..+..+.+|+++++..+.... .+..+..+++|+.+++..|......+ ..+..+++++.++++.|
T Consensus 377 ~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n 455 (635)
T 4g8a_A 377 DLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 455 (635)
T ss_dssp ECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred hhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 99999886 3456667788999999999998874 55678889999999999987765544 56788999999999999
Q ss_pred cccccCCcchhcccCCcceeEcCCCccc-ccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccC
Q 035922 407 NLSGTIPPQLFGLSSLSISLDLSRNHFT-GSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI 485 (581)
Q Consensus 407 ~l~~~~p~~~~~l~~L~~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 485 (581)
.+.+..+..+..++.+ +.|++++|.+. +..|..+..+++|++|+|++|++++..|..|.++++|++|+|++|++++..
T Consensus 456 ~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~ 534 (635)
T 4g8a_A 456 HTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 534 (635)
T ss_dssp CCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred ccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC
Confidence 9998888888889999 89999999854 457888999999999999999999989999999999999999999999988
Q ss_pred cccccCCCCCCEEECCCCccccccchhhhcC-CCCCEEECcCCCCCCC
Q 035922 486 PSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF-KLLENVNLSYNDLGAR 532 (581)
Q Consensus 486 p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~ 532 (581)
|..|+.+++|++||+++|++++..|+.+..+ ++|++|++++|++...
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred hhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999999999999999998 6899999999999865
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.7e-42 Score=359.93 Aligned_cols=389 Identities=17% Similarity=0.148 Sum_probs=293.2
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccC-CcccCCCCCCCEEECCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNI-PPEFGSLSKIKDLRSFM 176 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~ 176 (581)
+.++.++++++ .+|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45677777777 4565 3 378999999999999888899999999999999999987544 56789999999999999
Q ss_pred CcccccCCccCcCCCCCcEEEccCCCCCCcCCCc--cCCCCcccccccCCccCCCCCCcc-ccCCCCccEEEcccccCcc
Q 035922 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDT--LGYLENLSFLSLGGNMLSGTIPSS-IFNRSSITTFSVVLNRMQG 253 (581)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~ 253 (581)
|++++..|..++++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +.++++|++|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 9999888888999999999999999998755433 788888888888888888665654 5555655555555555544
Q ss_pred cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhc-ccCCcEEEccCCcccccCchhhcCCCCCCEEEee
Q 035922 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNF-STTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW 332 (581)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 332 (581)
..+..+.. + ...++.|++++|.+.+..+..++
T Consensus 169 ~~~~~l~~------------------------------------l~~~~L~~L~l~~n~l~~~~~~~~~----------- 201 (455)
T 3v47_A 169 ICEEDLLN------------------------------------FQGKHFTLLRLSSITLQDMNEYWLG----------- 201 (455)
T ss_dssp CCTTTSGG------------------------------------GTTCEEEEEECTTCBCTTCSTTCTT-----------
T ss_pred cChhhhhc------------------------------------cccccccccccccCcccccchhhcc-----------
Confidence 33322211 0 01344444444444432211110
Q ss_pred cCcCcccccccccCCCCCCeEeccCCcccccCCccCCC---CCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN---LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS 409 (581)
Q Consensus 333 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 409 (581)
......+..+++|++|++++|.+++..|..+.. .++|+.|++++|...+... ..+.+.
T Consensus 202 -----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~ 262 (455)
T 3v47_A 202 -----WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFK 262 (455)
T ss_dssp -----HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSC
T ss_pred -----ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhc
Confidence 011122345678888888888887766665543 3778888888877654321 112222
Q ss_pred ccCCcchhc--ccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc
Q 035922 410 GTIPPQLFG--LSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS 487 (581)
Q Consensus 410 ~~~p~~~~~--l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 487 (581)
+..+..+.. .+.+ +.|++++|.+++..|..+..+++|++|++++|++++..|..|..+++|++|++++|.+.+..|.
T Consensus 263 ~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 263 DPDNFTFKGLEASGV-KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp CCCTTTTGGGTTSCC-CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred cCcccccccccccCc-eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChh
Confidence 122222222 3567 8999999999999999999999999999999999988899999999999999999999988899
Q ss_pred cccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccCC
Q 035922 488 SLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGGI 558 (581)
Q Consensus 488 ~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~~ 558 (581)
.+..+++|+.|++++|++++..|..+..+++|++|++++|++++. .+. ...+++|+.+++++||..|...
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC-CHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999999899999999999999999999975 333 4678899999999999888653
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.7e-41 Score=352.01 Aligned_cols=394 Identities=22% Similarity=0.298 Sum_probs=247.1
Q ss_pred cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCC-------------CEEEccCCcCc
Q 035922 90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI-------------ILMDLSVNQLL 156 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~ 156 (581)
.-.+.++|++|++++|.+ +.+|++++++++|++|++++|.+.|.+|..++++++| ++|++++|.++
T Consensus 6 ~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred cccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 334567888888888888 6888888888889999998888888888888887764 88888888887
Q ss_pred ccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCcccc
Q 035922 157 GNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIF 236 (581)
Q Consensus 157 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 236 (581)
+ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|++++ +| .+.
T Consensus 85 ~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~ 150 (454)
T 1jl5_A 85 S-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQ 150 (454)
T ss_dssp C-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCT
T ss_pred c-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccC
Confidence 5 3432 3688888888888886 6653 3788888888888865 2321 1688888888888884 77 588
Q ss_pred CCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccC
Q 035922 237 NRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSI 316 (581)
Q Consensus 237 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 316 (581)
++++|++|++++|.+.+ +|.. .++|++|++++|.+. + +| .+..+. +|++|++++|.+++ +
T Consensus 151 ~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~-----------~-l~-~~~~l~-~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLE-----------E-LP-ELQNLP-FLTAIYADNNSLKK-L 210 (454)
T ss_dssp TCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-----------S-CC-CCTTCT-TCCEEECCSSCCSS-C
T ss_pred CCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCC-----------c-Cc-cccCCC-CCCEEECCCCcCCc-C
Confidence 88888888888888875 4432 346777666655543 3 33 345554 88888888888875 4
Q ss_pred chhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCC
Q 035922 317 PPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCK 396 (581)
Q Consensus 317 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 396 (581)
|.. .++|++|++++|+++ .+| .+..+++|++|++++|.+++ +|.. +++|+.|++++|++++ +|.. ++
T Consensus 211 ~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~ 277 (454)
T 1jl5_A 211 PDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQ 277 (454)
T ss_dssp CCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cC
Confidence 432 258888899888888 566 37888888899998888874 4432 4788888888888885 4543 47
Q ss_pred CCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCC-CCCCeeeccCCcCccccCccccCCCCCcEEE
Q 035922 397 SLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNL-KNLGVLDISGNLLSGEIPISLGSCTSLEKLL 475 (581)
Q Consensus 397 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 475 (581)
+|++|++++|++.+ +|.. .+++ +.|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|++|+
T Consensus 278 ~L~~L~ls~N~l~~-l~~~---~~~L-~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 278 SLTFLDVSENIFSG-LSEL---PPNL-YYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLI 343 (454)
T ss_dssp TCCEEECCSSCCSE-ESCC---CTTC-CEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred cCCEEECcCCccCc-ccCc---CCcC-CEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEE
Confidence 88888998888875 2221 1455 788888888884 22 23 588889999988885 6653 57888899
Q ss_pred CCCCcCcccCcccccCCCCCCEEECCCCcccc--ccchhhhcC-------------CCCCEEECcCCCCCC--CCCCCcc
Q 035922 476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG--EIPKFLAGF-------------KLLENVNLSYNDLGA--RYVPTEG 538 (581)
Q Consensus 476 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~ls~N~l~~--~~ip~~~ 538 (581)
+++|+++ .+|. .+++|+.|++++|++++ .+|.++..+ ++|++|++++|++++ . +|
T Consensus 344 L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~-iP--- 415 (454)
T 1jl5_A 344 ASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD-IP--- 415 (454)
T ss_dssp CCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred CCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcccc-ch---
Confidence 9998887 4665 47888899999998888 778887777 889999999999987 4 55
Q ss_pred ccCCcCcccccCCCCCc
Q 035922 539 VIKNSSATSVMGNSKLC 555 (581)
Q Consensus 539 ~~~~l~~l~~~gN~~lc 555 (581)
.+++.+.+.+|...|
T Consensus 416 --~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 --ESVEDLRMNSERVVD 430 (454)
T ss_dssp -----------------
T ss_pred --hhHhheeCcCcccCC
Confidence 457777788776444
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-40 Score=331.24 Aligned_cols=188 Identities=24% Similarity=0.472 Sum_probs=152.8
Q ss_pred CCCHhHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcc--ccCCCCcccccCccccCCCCCcEEECCCCCCCC--CCchhcc
Q 035922 41 AGNETDREALLEFKSKITVDPFGVLGSWNESSHFCK--WHESLKLAGSISPYIGNLSFLRRLHLDNNNFTH--AIPPEIG 116 (581)
Q Consensus 41 ~~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~~~~c~--w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~ 116 (581)
.|.++|++||++||+++. +|. .+.+|..+.+||. |.|..+-. -....++++|+|++|.+++ .+|..+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~------~~~~~~l~~L~L~~~~l~~~~~~~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDT------DTQTYRVNNLDLSGLNLPKPYPIPSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECC------SSSCCCEEEEEEECCCCSSCEECCGGGG
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCC------CCCCceEEEEECCCCCccCCcccChhHh
Confidence 488999999999999994 665 7899988889998 99743321 1112578999999999998 8899999
Q ss_pred CCCCCCEEEccC-CCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922 117 RLRRLRGLTLNN-NSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR 195 (581)
Q Consensus 117 ~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 195 (581)
++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 999999999995 8898899999999999999999999998888888888999999999999888888888888888888
Q ss_pred EEccCCCCCCcCCCccCCCC-cccccccCCccCCCCCCcccc
Q 035922 196 LSLTYNNIARSIPDTLGYLE-NLSFLSLGGNMLSGTIPSSIF 236 (581)
Q Consensus 196 L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~ 236 (581)
|++++|.+++.+|..+..++ +|++|++++|++++.+|..+.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 88888888777777776665 666666666666554444433
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.6e-39 Score=339.39 Aligned_cols=379 Identities=24% Similarity=0.316 Sum_probs=272.9
Q ss_pred cccCccccCCCCCcEEECCCCCCCCCCchhccCCCCC-------------CEEEccCCCCCCCCcccCcCCCCCCEEEcc
Q 035922 85 GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRL-------------RGLTLNNNSIGGEIPATMSRCSNIILMDLS 151 (581)
Q Consensus 85 g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 151 (581)
|.+|+.++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.. .++|++|+++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~ 99 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVAS 99 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEcc
Confidence 7899999999999999999999999999999998865 999999999985 4542 4789999999
Q ss_pred CCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCC
Q 035922 152 VNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTI 231 (581)
Q Consensus 152 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 231 (581)
+|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .++++++|++|++++|++++ +
T Consensus 100 ~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l 168 (454)
T 1jl5_A 100 CNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-L 168 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-C
T ss_pred CCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-c
Confidence 999997 6643 4789999999999984 4432 2799999999999987 67 59999999999999999994 6
Q ss_pred CccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc
Q 035922 232 PSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311 (581)
Q Consensus 232 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~ 311 (581)
|... .+|++|++++|.+.+ +| .+. .+++|+.|++++|.+.. +|.. .++|++|++++|.
T Consensus 169 p~~~---~~L~~L~L~~n~l~~-l~-~~~-~l~~L~~L~l~~N~l~~------------l~~~----~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 169 PDLP---PSLEFIAAGNNQLEE-LP-ELQ-NLPFLTAIYADNNSLKK------------LPDL----PLSLESIVAGNNI 226 (454)
T ss_dssp CCCC---TTCCEEECCSSCCSS-CC-CCT-TCTTCCEEECCSSCCSS------------CCCC----CTTCCEEECCSSC
T ss_pred CCCc---ccccEEECcCCcCCc-Cc-ccc-CCCCCCEEECCCCcCCc------------CCCC----cCcccEEECcCCc
Confidence 7654 589999999999987 55 343 48999888887776542 2222 1389999999999
Q ss_pred ccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc
Q 035922 312 IFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS 391 (581)
Q Consensus 312 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 391 (581)
++ .+|. ++.+++|++|++++|++++ +|. .+++|++|++++|.+++ +|.. .++|++|++++|++++. |.
T Consensus 227 l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~- 294 (454)
T 1jl5_A 227 LE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE- 294 (454)
T ss_dssp CS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-
T ss_pred CC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-
Confidence 98 6774 8899999999999999985 554 24799999999999985 5543 47899999999999862 22
Q ss_pred ccCCCCCcEEECCCCcccccCCcchhcc-cCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922 392 LCQCKSLIGINFSKNNLSGTIPPQLFGL-SSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS 470 (581)
Q Consensus 392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 470 (581)
-.++|++|++++|++.+ ++ .+ +++ +.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++
T Consensus 295 --~~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~ 358 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN 358 (454)
T ss_dssp --CCTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred --cCCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence 13689999999999984 33 23 356 899999999995 6654 589999999999999 5776 4789
Q ss_pred CcEEECCCCcCcc--cCcccccCC-------------CCCCEEECCCCcccc--ccchhhhcCCCCCEEECcCCCCCCCC
Q 035922 471 LEKLLMQGNKFYG--PIPSSLRSL-------------RGLSVWDFAQNNLSG--EIPKFLAGFKLLENVNLSYNDLGARY 533 (581)
Q Consensus 471 L~~L~Ls~n~l~~--~~p~~l~~l-------------~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~ 533 (581)
|++|++++|++.+ .+|.++..+ ++|+.||+++|.+++ .+|. +++.|.+.+|.+.+.
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~- 431 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDP- 431 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------------------------
T ss_pred ccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCc-
Confidence 9999999999998 788888887 899999999999997 6664 466778899998876
Q ss_pred CC
Q 035922 534 VP 535 (581)
Q Consensus 534 ip 535 (581)
+|
T Consensus 432 ~~ 433 (454)
T 1jl5_A 432 YE 433 (454)
T ss_dssp --
T ss_pred cc
Confidence 55
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-38 Score=333.04 Aligned_cols=358 Identities=19% Similarity=0.194 Sum_probs=254.7
Q ss_pred CccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCC
Q 035922 88 SPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLS 167 (581)
Q Consensus 88 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 167 (581)
+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 34567889999999999999964 5 689999999999999999964 4 89999999999999999874 3 89999
Q ss_pred CCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcc
Q 035922 168 KIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV 247 (581)
Q Consensus 168 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 247 (581)
+|++|++++|++++ +| ++.+++|++|++++|.+++. .++.+++|++|++++|+..+.+ .+..+++|++|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999996 44 89999999999999999874 3888999999999999766566 46778888999988
Q ss_pred cccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCC
Q 035922 248 LNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLR 327 (581)
Q Consensus 248 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 327 (581)
+|.+++ +| +. .+++|+.|++++|.++.. .+..+ ++|++|++++|++++ +| +..+++|+
T Consensus 179 ~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~--------------~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 179 FNKITE-LD--VS-QNKLLNRLNCDTNNITKL--------------DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp SSCCCC-CC--CT-TCTTCCEEECCSSCCSCC--------------CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred CCccce-ec--cc-cCCCCCEEECcCCcCCee--------------ccccC-CCCCEEECcCCcccc-cC--ccccCCCC
Confidence 888876 33 22 356666665555544321 12222 266666666666665 34 55666666
Q ss_pred EEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCc
Q 035922 328 RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNN 407 (581)
Q Consensus 328 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~ 407 (581)
+|++++|++++.. +..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|++|++++|.
T Consensus 237 ~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 237 YFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp EEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred EEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 6666666666432 334555555555443 34556666666666655 3566777777777777
Q ss_pred ccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcc
Q 035922 408 LSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPS 487 (581)
Q Consensus 408 l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 487 (581)
..+.+|.. ...+ +.|++++ +++|++|++++|++++ ++ ++.+++|+.|++++|++.+
T Consensus 298 ~l~~l~~~---~~~L-~~L~l~~-------------~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~---- 353 (457)
T 3bz5_A 298 QLYLLDCQ---AAGI-TELDLSQ-------------NPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD---- 353 (457)
T ss_dssp TCCEEECT---TCCC-SCCCCTT-------------CTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB----
T ss_pred ccceeccC---CCcc-eEechhh-------------cccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC----
Confidence 66665542 2233 3343333 3577788888888876 33 7777888888888887774
Q ss_pred cccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922 488 SLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536 (581)
Q Consensus 488 ~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~ 536 (581)
++.|+.|++++|.+.|. ..+..|+.+++++|+++|. ||.
T Consensus 354 ----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~-ip~ 392 (457)
T 3bz5_A 354 ----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIA-VSP 392 (457)
T ss_dssp ----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEE-CCT
T ss_pred ----ccccccccccCCcEEec-----ceeeecCccccccCcEEEE-cCh
Confidence 23455567777777765 2345567778888888877 774
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=336.14 Aligned_cols=319 Identities=20% Similarity=0.203 Sum_probs=200.5
Q ss_pred CEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCC
Q 035922 122 RGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYN 201 (581)
Q Consensus 122 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 201 (581)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56777777776 5565543 56777777777777766777777777777777777777666777777777777777777
Q ss_pred CCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEe
Q 035922 202 NIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLL 281 (581)
Q Consensus 202 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~ 281 (581)
.+++..+..|.++++|++|++++|++++..+..+..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------------------------------------------- 127 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL------------------------------------------- 127 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-------------------------------------------
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHcccc-------------------------------------------
Confidence 7765555556666666666666666553333222211
Q ss_pred ccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccc
Q 035922 282 LNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS 361 (581)
Q Consensus 282 l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 361 (581)
++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 128 ------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 128 ------------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ------------------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ------------------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 25666666666666666666777777777777777777655566777777777777777777
Q ss_pred ccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcccccCCcc
Q 035922 362 GNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIE 440 (581)
Q Consensus 362 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~ 440 (581)
+..+..|..+++|+.|++++|...+.+|.......+|++|++++|++. .+| ..+..++.| +.|++++|.+++..+..
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~ 267 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL-RFLNLSYNPISTIEGSM 267 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTC-CEEECCSSCCCEECTTS
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcccc-CeeECCCCcCCccChhh
Confidence 666666777777777777776666555555555556666666666655 333 344455555 55555555555444444
Q ss_pred ccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 441 VGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 555555555555555555555555555555555555555555444444555555555555555554
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-37 Score=328.33 Aligned_cols=345 Identities=25% Similarity=0.372 Sum_probs=198.2
Q ss_pred CCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEE
Q 035922 93 NLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDL 172 (581)
Q Consensus 93 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (581)
.++++++|+++++.+.. +| .+..+++|++|++++|.+++..+ ++++++|++|++++|.+.+..+ ++++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 46788999999999874 55 47889999999999999985544 8999999999999999986554 8899999999
Q ss_pred ECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCc
Q 035922 173 RSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQ 252 (581)
Q Consensus 173 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 252 (581)
++++|.+++. +. +.++++|++|++++|.+++. + .+..+++|++|+++ |.+.+. + .+.++++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcCCcCC
Confidence 9999998854 33 88889999999999888653 3 47778888888875 444422 1 1445555555555544433
Q ss_pred ccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEee
Q 035922 253 GNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVW 332 (581)
Q Consensus 253 ~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 332 (581)
+. + .+..+ ++|++|++++|.+.+..| ++.+++|++|+++
T Consensus 191 ~~-~-------------------------------------~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 191 DI-S-------------------------------------VLAKL-TNLESLIATNNQISDITP--LGILTNLDELSLN 229 (466)
T ss_dssp CC-G-------------------------------------GGGGC-TTCSEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CC-h-------------------------------------hhccC-CCCCEEEecCCccccccc--ccccCCCCEEECC
Confidence 21 0 11111 245555555555554332 4445555555555
Q ss_pred cCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccC
Q 035922 333 NNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTI 412 (581)
Q Consensus 333 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 412 (581)
+|++++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+..
T Consensus 230 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 230 GNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG
T ss_pred CCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch
Confidence 5555432 234455555555555555543322 4445555555555555543322 444455555555555444221
Q ss_pred CcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCC
Q 035922 413 PPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSL 492 (581)
Q Consensus 413 p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 492 (581)
+ +..++++ +.|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++.+..| +..+
T Consensus 304 ~--~~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 374 (466)
T 1o6v_A 304 P--ISNLKNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 374 (466)
T ss_dssp G--GGGCTTC-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTC
T ss_pred h--hcCCCCC-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcC
Confidence 1 3344444 444444444443322 33444444444444444422 233444444444444444443333 3444
Q ss_pred CCCCEEECCCCccc
Q 035922 493 RGLSVWDFAQNNLS 506 (581)
Q Consensus 493 ~~L~~L~ls~n~l~ 506 (581)
++|+.|++++|.++
T Consensus 375 ~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 375 TRITQLGLNDQAWT 388 (466)
T ss_dssp TTCCEEECCCEEEE
T ss_pred CCCCEEeccCCccc
Confidence 44444444444444
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-37 Score=327.87 Aligned_cols=348 Identities=29% Similarity=0.402 Sum_probs=292.2
Q ss_pred cCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922 116 GRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR 195 (581)
Q Consensus 116 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 195 (581)
..+++++.|+++++.+. .+| .+..+++|++|++++|.+++..+ ++++++|++|++++|.+.+..+ ++++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678999999999998 455 48889999999999999986544 8999999999999999986544 899999999
Q ss_pred EEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccC
Q 035922 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN 275 (581)
Q Consensus 196 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 275 (581)
|++++|.+++..+ +.++++|++|++++|.+++ ++ .+..+++|+.+++. +.+.+.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--------------------- 170 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--------------------- 170 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC---------------------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc---------------------
Confidence 9999999976543 8889999999999998874 33 36667777777764 222211
Q ss_pred cceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEec
Q 035922 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGM 355 (581)
Q Consensus 276 ~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 355 (581)
+ .+..+ ++|++|++++|.+.+. ..+..+++|++|++++|++++..+ ++.+++|++|++
T Consensus 171 ----------------~-~~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 228 (466)
T 1o6v_A 171 ----------------K-PLANL-TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228 (466)
T ss_dssp ----------------G-GGTTC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred ----------------h-hhccC-CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence 0 12333 3899999999998754 348899999999999999997655 778999999999
Q ss_pred cCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc
Q 035922 356 SGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG 435 (581)
Q Consensus 356 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~ 435 (581)
++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+. +. +..++.+ +.|++++|++++
T Consensus 229 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L-~~L~L~~n~l~~ 301 (466)
T 1o6v_A 229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTAL-TNLELNENQLED 301 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTC-SEEECCSSCCSC
T ss_pred CCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCcc-CeEEcCCCcccC
Confidence 99999853 467889999999999999997654 88999999999999999854 43 7889999 899999999996
Q ss_pred cCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhc
Q 035922 436 SLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG 515 (581)
Q Consensus 436 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~ 515 (581)
..+ +..+++|++|++++|++++..| +..+++|++|++++|++.+. ..+..+++|+.|++++|++++..| +..
T Consensus 302 ~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 373 (466)
T 1o6v_A 302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN 373 (466)
T ss_dssp CGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT
T ss_pred chh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc
Confidence 544 7899999999999999997665 78999999999999999865 468999999999999999998877 899
Q ss_pred CCCCCEEECcCCCCCCC
Q 035922 516 FKLLENVNLSYNDLGAR 532 (581)
Q Consensus 516 l~~L~~L~ls~N~l~~~ 532 (581)
+++|++|++++|++++.
T Consensus 374 l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CTTCCEEECCCEEEECC
T ss_pred CCCCCEEeccCCcccCC
Confidence 99999999999999983
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.3e-37 Score=322.80 Aligned_cols=356 Identities=17% Similarity=0.190 Sum_probs=252.5
Q ss_pred CCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCc
Q 035922 106 NFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS 185 (581)
Q Consensus 106 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 185 (581)
...+..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|++++. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~- 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D- 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C-
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e-
Confidence 34445566788999999999999999964 5 689999999999999999974 4 89999999999999999964 4
Q ss_pred cCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCC
Q 035922 186 SLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPN 265 (581)
Q Consensus 186 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 265 (581)
++++++|++|++++|.+++. + ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.++ +. .++
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~~-~l~- 170 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VT-PQT- 170 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--CT-TCT-
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--cc-cCC-
Confidence 88999999999999999874 3 8899999999999999986 33 6777888888888876554442 11 133
Q ss_pred CceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccccccccc
Q 035922 266 LQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIG 345 (581)
Q Consensus 266 L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 345 (581)
+|++|++++|++++ +| +..+++|++|++++|++++. .+.
T Consensus 171 -----------------------------------~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~ 209 (457)
T 3bz5_A 171 -----------------------------------QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLN 209 (457)
T ss_dssp -----------------------------------TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCT
T ss_pred -----------------------------------cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccc
Confidence 55566666666554 23 55566666666666666643 255
Q ss_pred CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922 346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS 425 (581)
Q Consensus 346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~ 425 (581)
.+++|++|++++|++++ +| +..+++|+.|++++|++++.. +..+++|++|++++|.+ +.
T Consensus 210 ~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L---------------~~ 268 (457)
T 3bz5_A 210 QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDL---------------LE 268 (457)
T ss_dssp TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCC---------------SC
T ss_pred cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCC---------------CE
Confidence 66666666666666664 33 556666666666666666532 33455555555554432 34
Q ss_pred eEcCCCcccccCCccccCCCCCCeeeccCCcCccccCc--------cccCCCCCcEEECCCCcCcccCcccccCCCCCCE
Q 035922 426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPI--------SLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSV 497 (581)
Q Consensus 426 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 497 (581)
|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++|++++|++++. + ++.+++|+.
T Consensus 269 L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~ 343 (457)
T 3bz5_A 269 IDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS 343 (457)
T ss_dssp CCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred EECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence 5555555554444 34455555555555554444432 134457889999999999874 3 888999999
Q ss_pred EECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCCC
Q 035922 498 WDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK 560 (581)
Q Consensus 498 L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~~ 560 (581)
|++++|++++ ++.|+.|++++|.+.|. +.+..+..++++.|. +.|.+|.
T Consensus 344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~-l~g~ip~ 392 (457)
T 3bz5_A 344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNS-LTIAVSP 392 (457)
T ss_dssp EECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTB-EEEECCT
T ss_pred EECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCc-EEEEcCh
Confidence 9999999886 24566778899998875 355678888999886 8887764
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=322.76 Aligned_cols=320 Identities=20% Similarity=0.182 Sum_probs=179.2
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN 177 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 177 (581)
+.++.++++++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555665555 3444332 46677777777776666666777777777777777776666666777777777777777
Q ss_pred cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCCh
Q 035922 178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPL 257 (581)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 257 (581)
++++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~------- 163 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN------- 163 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-------
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-------
Confidence 7664444456677777777777777766666667777777777777777665444444444444444443333
Q ss_pred hhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc
Q 035922 258 DFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS 337 (581)
Q Consensus 258 ~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 337 (581)
+++..+..+..+++|+.|++++|.+.
T Consensus 164 ------------------------------------------------------l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 164 ------------------------------------------------------LTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ------------------------------------------------------CSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ------------------------------------------------------CcccChhHhcccCCCcEEeCCCCcCc
Confidence 33222233444444444444444444
Q ss_pred ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchh
Q 035922 338 GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLF 417 (581)
Q Consensus 338 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 417 (581)
+..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+..+++|++|++++|++.+..+..+.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 44444444444455555544444444444333334555555555555533333445555555555555555544444455
Q ss_pred cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc
Q 035922 418 GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY 482 (581)
Q Consensus 418 ~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 482 (581)
.+++| +.|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 270 ~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 270 ELLRL-QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCTTC-CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccccC-CEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 55555 55555555555555555555555555555555555444444555555555555555554
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-37 Score=334.90 Aligned_cols=337 Identities=20% Similarity=0.179 Sum_probs=184.2
Q ss_pred CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922 94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR 173 (581)
Q Consensus 94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 173 (581)
+++++.++++++.+....+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34555555555555544444455555555555555555555455555555555555555555555554555555555555
Q ss_pred CCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcc
Q 035922 174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG 253 (581)
Q Consensus 174 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 253 (581)
+++|.+++..+..++++++|++|++++|.+++..|..|+.+++|++|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------ 185 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH------------------------ 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB------------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC------------------------
Confidence 55555553333334455555555555555544444444444444444444444331
Q ss_pred cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN 333 (581)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 333 (581)
. + ++.+++|+.|++++
T Consensus 186 -------------------------------------------------------------~-~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 186 -------------------------------------------------------------V-D--LSLIPSLFHANVSY 201 (597)
T ss_dssp -------------------------------------------------------------C-C--GGGCTTCSEEECCS
T ss_pred -------------------------------------------------------------c-C--hhhhhhhhhhhccc
Confidence 1 0 12233344444444
Q ss_pred CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC
Q 035922 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413 (581)
Q Consensus 334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 413 (581)
|.+++ +...++|+.|++++|.+....+ .+ .++|+.|++++|.+++ +
T Consensus 202 n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--------------------------~ 247 (597)
T 3oja_B 202 NLLST-----LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--------------------------T 247 (597)
T ss_dssp SCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--------------------------C
T ss_pred Ccccc-----ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--------------------------C
Confidence 44432 1122345555555554442211 11 1344444444444443 1
Q ss_pred cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCC
Q 035922 414 PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR 493 (581)
Q Consensus 414 ~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 493 (581)
..+..++.| +.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|.+. .+|..+..++
T Consensus 248 ~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~ 324 (597)
T 3oja_B 248 AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 324 (597)
T ss_dssp GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred hhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCC
Confidence 334444445 455555555555555566666666666666666663 4555566777777777777776 5666667777
Q ss_pred CCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCCC
Q 035922 494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIPK 560 (581)
Q Consensus 494 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~~ 560 (581)
+|+.|++++|.+.+. | +..+++|++|++++|++.+. . ....+..+....+.+++..|+..+.
T Consensus 325 ~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~-~-~~~~~~~~~~~~~~~~~~~C~~~~~ 386 (597)
T 3oja_B 325 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN-S-LRALFRNVARPAVDDADQHCKIDYQ 386 (597)
T ss_dssp TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH-H-HHHHTTTCCTTTBCCCCCCCCTTCE
T ss_pred CCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh-h-HHHHHHHHhhhccccccccCCcchh
Confidence 777777777777644 2 56677788888888887764 2 2345666777778888889986543
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-36 Score=314.22 Aligned_cols=334 Identities=20% Similarity=0.183 Sum_probs=179.3
Q ss_pred CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922 94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR 173 (581)
Q Consensus 94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 173 (581)
++++++|+++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45555555555555543333345555555555555555544444555555555555555555554444455555555555
Q ss_pred CCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcc
Q 035922 174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG 253 (581)
Q Consensus 174 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 253 (581)
+++|+++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------- 178 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT------------------------- 178 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-------------------------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-------------------------
Confidence 5555555222222344555555555555544444444444444444444444333
Q ss_pred cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN 333 (581)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 333 (581)
+. .+..+++|++|++++
T Consensus 179 ------------------------------------------------------------~~---~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 179 ------------------------------------------------------------HV---DLSLIPSLFHANVSY 195 (390)
T ss_dssp ------------------------------------------------------------BC---CGGGCTTCSEEECCS
T ss_pred ------------------------------------------------------------cc---ccccccccceeeccc
Confidence 11 022233444444444
Q ss_pred CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC
Q 035922 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413 (581)
Q Consensus 334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 413 (581)
|.+++ +...++|++|++++|.+... |.. ..++|+.|++++|.+++.
T Consensus 196 n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~-------------------------- 241 (390)
T 3o6n_A 196 NLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT-------------------------- 241 (390)
T ss_dssp SCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--------------------------
T ss_pred ccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--------------------------
Confidence 44432 11223455555555554422 111 123444455544444432
Q ss_pred cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCC
Q 035922 414 PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR 493 (581)
Q Consensus 414 ~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 493 (581)
..+..++.+ +.|++++|.+++..|..+..+++|++|++++|+++ .+|..+..+++|++|++++|++. .+|..+..++
T Consensus 242 ~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~ 318 (390)
T 3o6n_A 242 AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD 318 (390)
T ss_dssp GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT
T ss_pred HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccC
Confidence 233444444 45555555555555555666666666666666666 34555566677777777777776 4555666777
Q ss_pred CCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922 494 GLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 494 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~ 557 (581)
+|+.|++++|.++.. | +..+++|++|++++|++.+. .....+..+....+.+++..|+.
T Consensus 319 ~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~--~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 319 RLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp TCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH--HHHHHTTTCCTTTBCCCCSCCCT
T ss_pred cCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch--hHHHHHHHHHhhcccccCceecc
Confidence 777777777777643 2 56677788888888887753 22345667777778888888874
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-37 Score=308.69 Aligned_cols=254 Identities=31% Similarity=0.519 Sum_probs=242.6
Q ss_pred CCcEEEccCCcccc--cCchhhcCCCCCCEEEeec-CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922 301 TLASLFLDNNKIFG--SIPPGIGKLVNLRRLYVWN-NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377 (581)
Q Consensus 301 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 377 (581)
++++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 79999999999998 8999999999999999995 99999999999999999999999999999999999999999999
Q ss_pred eecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhccc-CCcceeEcCCCcccccCCccccCCCCCCeeeccCCc
Q 035922 378 EVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLS-SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL 456 (581)
Q Consensus 378 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 456 (581)
++++|.+++.+|..+..+++|++|++++|++.+.+|..+..++ .+ +.|++++|++++.+|..+..++ |++|++++|+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999999999999999999999999999999999999998 77 8999999999999999999987 9999999999
Q ss_pred CccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922 457 LSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536 (581)
Q Consensus 457 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~ 536 (581)
+++..|..+..+++|+.|++++|++.+.+|. +..+++|+.|++++|.+++.+|..+..+++|++|++++|+++|. +|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~ 286 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-IPQ 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-CCC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-CCC
Confidence 9999999999999999999999999977776 88999999999999999999999999999999999999999998 999
Q ss_pred ccccCCcCcccccCCCCCccCC
Q 035922 537 EGVIKNSSATSVMGNSKLCGGI 558 (581)
Q Consensus 537 ~~~~~~l~~l~~~gN~~lcg~~ 558 (581)
.+.+++|+.+++.|||++||.+
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTT
T ss_pred CccccccChHHhcCCCCccCCC
Confidence 8899999999999999999964
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-34 Score=297.37 Aligned_cols=313 Identities=19% Similarity=0.173 Sum_probs=213.6
Q ss_pred CCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEE
Q 035922 117 RLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRL 196 (581)
Q Consensus 117 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 196 (581)
.++++++|++++|.++...+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35667777777777664333345666666666666666665555555556666666655555554444444445555555
Q ss_pred EccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCc
Q 035922 197 SLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNF 276 (581)
Q Consensus 197 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 276 (581)
++++|.++...+..|.+++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~------------------------------------------------------------- 141 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTP------------------------------------------------------------- 141 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCT-------------------------------------------------------------
T ss_pred ECCCCccCcCCHHHhcCCC-------------------------------------------------------------
Confidence 5544444322111122222
Q ss_pred ceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEecc
Q 035922 277 TELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMS 356 (581)
Q Consensus 277 ~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 356 (581)
+|++|++++|.+.+..+..+..+++|++|++++|++++. .+..+++|+.|+++
T Consensus 142 ------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 142 ------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS 194 (390)
T ss_dssp ------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC
T ss_pred ------------------------CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc
Confidence 344444444444444445566677777777777777643 23455666666666
Q ss_pred CCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc
Q 035922 357 GNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS 436 (581)
Q Consensus 357 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~ 436 (581)
+|.+++. ...++|++|++++|.+. .+|... .+++ +.|++++|.+++.
T Consensus 195 ~n~l~~~-----------------------------~~~~~L~~L~l~~n~l~-~~~~~~--~~~L-~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 195 YNLLSTL-----------------------------AIPIAVEELDASHNSIN-VVRGPV--NVEL-TILKLQHNNLTDT 241 (390)
T ss_dssp SSCCSEE-----------------------------ECCSSCSEEECCSSCCC-EEECCC--CSSC-CEEECCSSCCCCC
T ss_pred ccccccc-----------------------------CCCCcceEEECCCCeee-eccccc--cccc-cEEECCCCCCccc
Confidence 6655421 12234566666666655 223222 3566 8899999999853
Q ss_pred CCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcC
Q 035922 437 LPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF 516 (581)
Q Consensus 437 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l 516 (581)
..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+ +|..+..+++|+.|++++|++. .+|..+..+
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l 317 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence 578899999999999999998889999999999999999999985 5777788999999999999998 567778999
Q ss_pred CCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922 517 KLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 517 ~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~ 557 (581)
++|++|++++|+++.. | ...+++|+.++++|||+-|..
T Consensus 318 ~~L~~L~L~~N~i~~~--~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTL--K-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TTCSEEECCSSCCCCC--C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CcCCEEECCCCcccee--C-chhhccCCEEEcCCCCccchh
Confidence 9999999999999874 4 567899999999999998853
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.6e-34 Score=288.48 Aligned_cols=307 Identities=22% Similarity=0.338 Sum_probs=170.1
Q ss_pred ccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCC
Q 035922 91 IGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIK 170 (581)
Q Consensus 91 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 170 (581)
+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++. ++ .+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 3456677777777777763 33 366677777777777776633 32 6666666666666666553 22 355555555
Q ss_pred EEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEccccc
Q 035922 171 DLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNR 250 (581)
Q Consensus 171 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 250 (581)
+|++++|.+.+ ++. +..+++|++|++++|.....++ .+..+
T Consensus 114 ~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l------------------------------------ 154 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNM------------------------------------ 154 (347)
T ss_dssp EEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTC------------------------------------
T ss_pred EEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhC------------------------------------
Confidence 55555555442 111 3333344444333332211111 01111
Q ss_pred CcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 035922 251 MQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLY 330 (581)
Q Consensus 251 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 330 (581)
++|++|++++|.+.+..+ +..+++|++|+
T Consensus 155 -------------------------------------------------~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 155 -------------------------------------------------TGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp -------------------------------------------------TTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred -------------------------------------------------CCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 134444444444432221 55566677777
Q ss_pred eecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccc
Q 035922 331 VWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSG 410 (581)
Q Consensus 331 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 410 (581)
+++|++.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~----------- 246 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT----------- 246 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC-----------
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC-----------
Confidence 77776663322 5566666666666666553322 4445555555555555543222 44444444
Q ss_pred cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCccccc
Q 035922 411 TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLR 490 (581)
Q Consensus 411 ~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~ 490 (581)
.|++++|.+++ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|++.+..|+.+.
T Consensus 247 --------------~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 308 (347)
T 4fmz_A 247 --------------WLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIG 308 (347)
T ss_dssp --------------EEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred --------------EEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhh
Confidence 44444444442 2 2355566677777777776642 3466777777777777777777777777
Q ss_pred CCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922 491 SLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530 (581)
Q Consensus 491 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 530 (581)
.+++|+.|++++|.+++..| +..+++|++|++++|+++
T Consensus 309 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777777777776555 677777777777777764
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=307.60 Aligned_cols=311 Identities=19% Similarity=0.194 Sum_probs=234.7
Q ss_pred CCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccc
Q 035922 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLS 221 (581)
Q Consensus 142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 221 (581)
+.+++.+++++|.+....+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 57889999999999876666678899999999999999877777888888889998888888887777777777777777
Q ss_pred cCCccCCCCCCcc-ccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhccc
Q 035922 222 LGGNMLSGTIPSS-IFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST 300 (581)
Q Consensus 222 l~~n~l~~~~p~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~ 300 (581)
+++|.++ .+|.. +.++ +
T Consensus 130 L~~n~l~-~l~~~~~~~l-------------------------------------------------------------~ 147 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNT-------------------------------------------------------------P 147 (597)
T ss_dssp CCSSCCC-CCCTTTTTTC-------------------------------------------------------------T
T ss_pred eeCCCCC-CCCHHHhccC-------------------------------------------------------------C
Confidence 7777766 22221 1111 2
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n---------------------- 202 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN---------------------- 202 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS----------------------
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC----------------------
Confidence 4555555555555555555566666666666666555321 233444555555544
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
.+++ +...++|++|++++|.+. .++..+ .+.+ +.|++++|.+++ +..+..+++|++|+|++|.+++.
T Consensus 203 --~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~--~~~L-~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 203 --LLST-----LAIPIAVEELDASHNSIN-VVRGPV--NVEL-TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp --CCSE-----EECCTTCSEEECCSSCCC-EEECSC--CSCC-CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred --cccc-----ccCCchhheeeccCCccc-cccccc--CCCC-CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence 4432 123345666667666665 233222 2456 899999999996 46789999999999999999999
Q ss_pred cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCcccc
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVI 540 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~ 540 (581)
.|..|..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++++. | ...+
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~--~-~~~~ 344 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL--K-LSTH 344 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC--C-CCTT
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc--C-hhhc
Confidence 99999999999999999999986 6777788999999999999998 6788889999999999999999874 4 5578
Q ss_pred CCcCcccccCCCCCccC
Q 035922 541 KNSSATSVMGNSKLCGG 557 (581)
Q Consensus 541 ~~l~~l~~~gN~~lcg~ 557 (581)
++|+.++++|||+-|..
T Consensus 345 ~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 345 HTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCCSEEECCSSCEEHHH
T ss_pred CCCCEEEeeCCCCCChh
Confidence 89999999999998853
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.1e-33 Score=282.39 Aligned_cols=284 Identities=25% Similarity=0.346 Sum_probs=177.7
Q ss_pred cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922 90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI 169 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (581)
.+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+ +..+++|
T Consensus 61 ~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L 134 (347)
T 4fmz_A 61 GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP--LANLTKM 134 (347)
T ss_dssp TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG--GTTCTTC
T ss_pred hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh--hccCCce
Confidence 478899999999999999854 44 9999999999999999985 44 69999999999999999985433 8999999
Q ss_pred CEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc
Q 035922 170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN 249 (581)
Q Consensus 170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 249 (581)
++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++. +..++
T Consensus 135 ~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~---------- 199 (347)
T 4fmz_A 135 YSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLT---------- 199 (347)
T ss_dssp CEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCT----------
T ss_pred eEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCC----------
Confidence 999999997665544 48999999999999999876543 6677777777777776652 211 22222
Q ss_pred cCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEE
Q 035922 250 RMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL 329 (581)
Q Consensus 250 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 329 (581)
+|+.|++++|.+.+..+ +..+++|++|
T Consensus 200 ---------------------------------------------------~L~~L~l~~n~l~~~~~--~~~~~~L~~L 226 (347)
T 4fmz_A 200 ---------------------------------------------------SLHYFTAYVNQITDITP--VANMTRLNSL 226 (347)
T ss_dssp ---------------------------------------------------TCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred ---------------------------------------------------ccceeecccCCCCCCch--hhcCCcCCEE
Confidence 44455555554443322 4555566666
Q ss_pred EeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922 330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS 409 (581)
Q Consensus 330 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 409 (581)
++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++.
T Consensus 227 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~ 300 (347)
T 4fmz_A 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300 (347)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCC
Confidence 666666553322 55555566666655555432 2344445555555555544432 22344444444444444444
Q ss_pred ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCc
Q 035922 410 GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL 456 (581)
Q Consensus 410 ~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 456 (581)
+..+..+..++++ +.|++++|++++..| +..+++|++|++++|.
T Consensus 301 ~~~~~~l~~l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NEDMEVIGGLTNL-TTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGHHHHHTCTTC-SEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred CcChhHhhccccC-CEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 3333334444444 344444444432222 3333444444444443
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.2e-34 Score=289.39 Aligned_cols=190 Identities=17% Similarity=0.241 Sum_probs=137.2
Q ss_pred ccCCCHhHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCccccCCCCcccccCccc--cCCCCCcEEECCCCCCCCCCc
Q 035922 39 RVAGNETDREALLEFKSKITVDPFGVLGSW----NESSHFCKWHESLKLAGSISPYI--GNLSFLRRLHLDNNNFTHAIP 112 (581)
Q Consensus 39 ~~~~~~~~~~~ll~~k~~~~~~~~~~l~~w----~~~~~~c~w~~~~~~~g~i~~~~--~~l~~L~~L~Ls~n~l~~~~p 112 (581)
..++..+|++||++||+.+..|+.+..+.| ....++|.|.|... ..++..+ ...+++++|+|++|.++ .+|
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~--~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp 97 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL--KATADLLEDATQPGRVALELRSVPLP-QFP 97 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHH--HHHHHHHHHHTSTTCCEEEEESSCCS-SCC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcch--hhhHHHHhcccccceeEEEccCCCch-hcC
Confidence 344567899999999999877888888899 45668999987321 1111111 24578899999999998 778
Q ss_pred hhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCC
Q 035922 113 PEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSS 192 (581)
Q Consensus 113 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 192 (581)
..+.++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|++.+.+|..+...
T Consensus 98 ~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-- 173 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-- 173 (328)
T ss_dssp SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence 88888999999999999998 88888999999999999999998 778888899999999999988888888766540
Q ss_pred CcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc
Q 035922 193 IIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN 249 (581)
Q Consensus 193 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 249 (581)
..+..+.++++|++|++++|+++ .+|..+..+++|++|++++|
T Consensus 174 -------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N 216 (328)
T 4fcg_A 174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216 (328)
T ss_dssp -------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESS
T ss_pred -------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCC
Confidence 01122444556666666666555 45544444444444333333
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.5e-36 Score=320.74 Aligned_cols=384 Identities=19% Similarity=0.126 Sum_probs=205.8
Q ss_pred CCCcEEECCCCCCCCCCchh-ccCCCCCCEEEccCCCCCC----CCcccCcCCCCCCEEEccCCcCcccCCccc-CCCC-
Q 035922 95 SFLRRLHLDNNNFTHAIPPE-IGRLRRLRGLTLNNNSIGG----EIPATMSRCSNIILMDLSVNQLLGNIPPEF-GSLS- 167 (581)
Q Consensus 95 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~- 167 (581)
++|++|++++++++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788999998887543333 6788899999999998874 346677888889999999988875433332 2344
Q ss_pred ---CCCEEECCCCcccc----cCCccCcCCCCCcEEEccCCCCCCcCCCccC-----CCCcccccccCCccCCCCC----
Q 035922 168 ---KIKDLRSFMNNLTG----SIPSSLGNLSSIIRLSLTYNNIARSIPDTLG-----YLENLSFLSLGGNMLSGTI---- 231 (581)
Q Consensus 168 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~~---- 231 (581)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 4577778888888888888887543332221 2345666666666665422
Q ss_pred CccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCc
Q 035922 232 PSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNK 311 (581)
Q Consensus 232 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~ 311 (581)
+..+..+++|++|++++|.+.+..+..+. ..+....++|++|++++|.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~--------------------------------~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLC--------------------------------QGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHH--------------------------------HHHHHSCCCCCEEECTTSC
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHH--------------------------------HHHhcCCCCceEEEccCCC
Confidence 22233334444444444333321111111 0011011245555555554
Q ss_pred cccc----CchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCC
Q 035922 312 IFGS----IPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGT 387 (581)
Q Consensus 312 l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 387 (581)
+++. ++..+..+++|++|++++|++++.....+. +..+..+++|++|++++|.++..
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-------------------~~~~~~~~~L~~L~L~~n~l~~~ 271 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC-------------------PGLLHPSSRLRTLWIWECGITAK 271 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH-------------------HHHTSTTCCCCEEECTTSCCCHH
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHH-------------------HHHhcCCCCceEEECcCCCCCHH
Confidence 4432 233444445555555555544422111000 11112344444444444444432
Q ss_pred ----CcccccCCCCCcEEECCCCcccccCCcchhcc-----cCCcceeEcCCCccccc----CCccccCCCCCCeeeccC
Q 035922 388 ----IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGL-----SSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISG 454 (581)
Q Consensus 388 ----~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l-----~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~ 454 (581)
++..+..+++|++|++++|.+.+..+..+... +++ +.|++++|.+++. ++..+..+++|++|++++
T Consensus 272 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC
Confidence 33334445555555555555543322222221 344 5555555555543 334445556666666666
Q ss_pred CcCccccCccccC-----CCCCcEEECCCCcCcc----cCcccccCCCCCCEEECCCCccccccchhhh-----cCCCCC
Q 035922 455 NLLSGEIPISLGS-----CTSLEKLLMQGNKFYG----PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLA-----GFKLLE 520 (581)
Q Consensus 455 n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~-----~l~~L~ 520 (581)
|++++..+..+.. .++|++|++++|++++ .+|..+..+++|+.|++++|++++.-...+. ....|+
T Consensus 351 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~ 430 (461)
T 1z7x_W 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCC
T ss_pred CccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchh
Confidence 6665443333322 4566666666666664 5556666666666666666666543222221 123466
Q ss_pred EEECcCCCCC
Q 035922 521 NVNLSYNDLG 530 (581)
Q Consensus 521 ~L~ls~N~l~ 530 (581)
.|++.++.+.
T Consensus 431 ~L~~~~~~~~ 440 (461)
T 1z7x_W 431 QLVLYDIYWS 440 (461)
T ss_dssp EEECTTCCCC
T ss_pred heeecccccC
Confidence 6666665554
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=8.5e-36 Score=314.98 Aligned_cols=378 Identities=16% Similarity=0.090 Sum_probs=262.1
Q ss_pred CCCCEEEccCCCCCCCCccc-CcCCCCCCEEEccCCcCcc----cCCcccCCCCCCCEEECCCCcccccCCccC-cCCC-
Q 035922 119 RRLRGLTLNNNSIGGEIPAT-MSRCSNIILMDLSVNQLLG----NIPPEFGSLSKIKDLRSFMNNLTGSIPSSL-GNLS- 191 (581)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~- 191 (581)
++|++|++++|.++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788888888887443333 6778888888888888764 345667777888888888887765433322 2233
Q ss_pred ---CCcEEEccCCCCCC----cCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCC
Q 035922 192 ---SIIRLSLTYNNIAR----SIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLP 264 (581)
Q Consensus 192 ---~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 264 (581)
+|++|++++|.++. .++..+..+++|++|++++|.+++. .+..+..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~------------------------~~~~l~~--- 135 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA------------------------GLQLLCE--- 135 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH------------------------HHHHHHH---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH------------------------HHHHHHH---
Confidence 57777777777653 3355555666666666666655422 1111111
Q ss_pred CCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCcccc
Q 035922 265 NLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSGTI 340 (581)
Q Consensus 265 ~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~ 340 (581)
.+....++|++|++++|.+++. ++..+..+++|++|++++|.+++..
T Consensus 136 -----------------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 136 -----------------------------GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp -----------------------------HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred -----------------------------HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 0000012566677777766653 3455666778888888888776544
Q ss_pred ccccc-----CCCCCCeEeccCCccccc----CCccCCCCCCCcEEeecCcccCCCC-----cccccCCCCCcEEECCCC
Q 035922 341 PSAIG-----DLQNLRMLGMSGNRFSGN----IPLSVGNLKMLIQLEVSENFLQGTI-----PSSLCQCKSLIGINFSKN 406 (581)
Q Consensus 341 ~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~ls~n 406 (581)
+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.. +..+..+++|++|++++|
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 43332 356888888888887753 4555667788888888888876532 233346899999999999
Q ss_pred ccccc----CCcchhcccCCcceeEcCCCcccccCCccccC-----CCCCCeeeccCCcCccc----cCccccCCCCCcE
Q 035922 407 NLSGT----IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGN-----LKNLGVLDISGNLLSGE----IPISLGSCTSLEK 473 (581)
Q Consensus 407 ~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~ 473 (581)
.+++. ++..+..++++ +.|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 99854 67778889999 89999999998654444443 36999999999999865 5667788899999
Q ss_pred EECCCCcCcccCcccccC-----CCCCCEEECCCCcccc----ccchhhhcCCCCCEEECcCCCCCCCCCCCc-----cc
Q 035922 474 LLMQGNKFYGPIPSSLRS-----LRGLSVWDFAQNNLSG----EIPKFLAGFKLLENVNLSYNDLGARYVPTE-----GV 539 (581)
Q Consensus 474 L~Ls~n~l~~~~p~~l~~-----l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~-----~~ 539 (581)
|++++|.+.+..+..+.. .++|+.|++++|.+++ .+|..+..+++|++|++++|++++..+... ..
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 999999998766555543 7899999999999986 788999999999999999999975311111 11
Q ss_pred cCCcCcccccCCCC
Q 035922 540 IKNSSATSVMGNSK 553 (581)
Q Consensus 540 ~~~l~~l~~~gN~~ 553 (581)
..+++.+.+.++.+
T Consensus 426 ~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 426 GCLLEQLVLYDIYW 439 (461)
T ss_dssp TCCCCEEECTTCCC
T ss_pred Ccchhheeeccccc
Confidence 23566677766654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.5e-31 Score=269.49 Aligned_cols=204 Identities=18% Similarity=0.143 Sum_probs=104.3
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 378 (581)
+|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+. ++|++|+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELH 198 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEE
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEE
Confidence 45555666666555555556666777777777776642 44556666666677777666665 2333322 4555666
Q ss_pred ecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS 458 (581)
Q Consensus 379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 458 (581)
+++|.+++..|..+..+++|++|++++|.+.+..+..+..++++ +.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL-RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 66655555555555555555555555555554434344444444 44444444444 34444444444444444444444
Q ss_pred cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc--ccchhhhcCCCCCEEECcCC
Q 035922 459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG--EIPKFLAGFKLLENVNLSYN 527 (581)
Q Consensus 459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~ls~N 527 (581)
+..+..|.... .....+.++.|++++|.+.. ..|..+..++.++.+++++|
T Consensus 277 ~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcc------------------cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 33222221110 00012445555555555532 33455555666666666655
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.6e-32 Score=274.27 Aligned_cols=294 Identities=22% Similarity=0.279 Sum_probs=178.4
Q ss_pred CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922 96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF 175 (581)
Q Consensus 96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 175 (581)
++++++++++.++ .+|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4678888888887 5665553 688888888888887767788888888888888888887778888888888888888
Q ss_pred CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCC--CCCccccCCCCccEEEcccccCcc
Q 035922 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSG--TIPSSIFNRSSITTFSVVLNRMQG 253 (581)
Q Consensus 176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~ 253 (581)
+|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++. ..+..+..+ +|+.|++++|.+.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 88887 5666555 788888888888876666667788888888888887752 344444433 44444444444332
Q ss_pred cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN 333 (581)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 333 (581)
+ |..+. ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 187 -l------------------------------------~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 187 -I------------------------------------PKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp -C------------------------------------CSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred -c------------------------------------Ccccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 1 11111 2455555555555544444555555555555555
Q ss_pred CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC
Q 035922 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP 413 (581)
Q Consensus 334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 413 (581)
|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+.....
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---------------- 289 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF---------------- 289 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC----------------
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccc----------------
Confidence 5555444445555555555555555554 44444555555555555555555433333322100
Q ss_pred cchhcccCCcceeEcCCCccc--ccCCccccCCCCCCeeeccCCc
Q 035922 414 PQLFGLSSLSISLDLSRNHFT--GSLPIEVGNLKNLGVLDISGNL 456 (581)
Q Consensus 414 ~~~~~l~~L~~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~ 456 (581)
......+ +.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 290 --~~~~~~l-~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 --GVKRAYY-NGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --CSSSCCB-SEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --ccccccc-cceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0001233 45566666554 3445556666666666666653
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1e-31 Score=270.97 Aligned_cols=152 Identities=24% Similarity=0.315 Sum_probs=77.6
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc--ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEe
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS--GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLE 378 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 378 (581)
+|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|..+. ++|++|+
T Consensus 124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 199 (332)
T 2ft3_A 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELH 199 (332)
T ss_dssp TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCB
T ss_pred cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEE
Confidence 4555555555555444444556666666666666664 2444555555 66666666666653 333322 4555555
Q ss_pred ecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS 458 (581)
Q Consensus 379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 458 (581)
+++|.+++..+..+..+++|++|++++|++.+..+..+..++++ +.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL-RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence 55555555444455555555555555555543333344444444 44444444444 34444444444444444444444
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.6e-31 Score=269.39 Aligned_cols=250 Identities=20% Similarity=0.273 Sum_probs=174.3
Q ss_pred CCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECC
Q 035922 96 FLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSF 175 (581)
Q Consensus 96 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 175 (581)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4577888888877 4565443 678888888888887666678888888888888888887778888888888888888
Q ss_pred CCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCC--CCCccccCCCCccEEEcccccCcc
Q 035922 176 MNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSG--TIPSSIFNRSSITTFSVVLNRMQG 253 (581)
Q Consensus 176 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~n~l~~ 253 (581)
+|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 88887 5666554 688888888888877666677788888888888887752 444555555555555555554431
Q ss_pred cCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeec
Q 035922 254 NIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWN 333 (581)
Q Consensus 254 ~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 333 (581)
+| ..+. ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 186 -l~------------------------------------~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 225 (330)
T 1xku_A 186 -IP------------------------------------QGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225 (330)
T ss_dssp -CC------------------------------------SSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred -CC------------------------------------cccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 11 1111 2667777777777666666677777777777777
Q ss_pred CcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccc
Q 035922 334 NKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSL 392 (581)
Q Consensus 334 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 392 (581)
|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus 226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 7776655556666777777777777666 556666666667777777776665444444
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.6e-33 Score=305.46 Aligned_cols=408 Identities=13% Similarity=0.072 Sum_probs=231.8
Q ss_pred CccccCCCCCcEEECCCCCC---CCCCchhcc------------CCCCCCEEEccCCCCCCCCcccCcC-CC-CCCEEEc
Q 035922 88 SPYIGNLSFLRRLHLDNNNF---THAIPPEIG------------RLRRLRGLTLNNNSIGGEIPATMSR-CS-NIILMDL 150 (581)
Q Consensus 88 ~~~~~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L~L 150 (581)
+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 33456788899999977532 123332222 6888999999888887666666655 33 4888888
Q ss_pred cCCc-Ccc-cCCcccCCCCCCCEEECCCCccccc----CCccCcCCCCCcEEEccCCCCCC----cCCCccCCCCccccc
Q 035922 151 SVNQ-LLG-NIPPEFGSLSKIKDLRSFMNNLTGS----IPSSLGNLSSIIRLSLTYNNIAR----SIPDTLGYLENLSFL 220 (581)
Q Consensus 151 s~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L 220 (581)
++|. ++. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 8876 221 2223334678888888888887655 33345567888888888888763 233344567788888
Q ss_pred ccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhccc
Q 035922 221 SLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFST 300 (581)
Q Consensus 221 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~ 300 (581)
++++|.+. .+|..+..+++|++++++......... ..+..+..+ +
T Consensus 226 ~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~---------------------------------~~~~~l~~~-~ 270 (592)
T 3ogk_B 226 KVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMP---------------------------------EKYMNLVFP-R 270 (592)
T ss_dssp ECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCT---------------------------------TSSSCCCCC-T
T ss_pred eccCccHH-HHHHHHhhhhHHHhhcccccccccchH---------------------------------HHHHHhhcc-c
Confidence 88888777 366667777777777776422210000 001111111 2
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccccc-ccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
+|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++..+..+++|++|++
T Consensus 271 ~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 45555555432 22344445555556666666555443222 22445556666666522222222222234555666666
Q ss_pred cC-----------cccCCC-CcccccCCCCCcEEECCCCcccccCCcchhc-ccCCcceeEcC----CCccccc-----C
Q 035922 380 SE-----------NFLQGT-IPSSLCQCKSLIGINFSKNNLSGTIPPQLFG-LSSLSISLDLS----RNHFTGS-----L 437 (581)
Q Consensus 380 ~~-----------n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~~L~Ls----~n~l~~~-----~ 437 (581)
++ +.+++. ++.....+++|++|+++.|.+++..+..+.. +++| +.|+++ .|.+++. +
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHH
Confidence 52 333322 1112234566666666666665555555444 5555 566664 4455532 2
Q ss_pred CccccCCCCCCeeeccCCc--CccccCcccc-CCCCCcEEECCCCcCccc-CcccccCCCCCCEEECCCCccccc-cchh
Q 035922 438 PIEVGNLKNLGVLDISGNL--LSGEIPISLG-SCTSLEKLLMQGNKFYGP-IPSSLRSLRGLSVWDFAQNNLSGE-IPKF 512 (581)
Q Consensus 438 p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~-~p~~ 512 (581)
+..+.++++|++|++++|. +++..+..+. .+++|+.|++++|++++. ++..+..+++|+.|++++|.+++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 2334556677777776433 5544444443 366777777777776642 344446667777777777776543 3344
Q ss_pred hhcCCCCCEEECcCCCCCCC
Q 035922 513 LAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 513 l~~l~~L~~L~ls~N~l~~~ 532 (581)
+..+++|++|++++|+++..
T Consensus 509 ~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTT
T ss_pred HHhcCccCeeECcCCcCCHH
Confidence 45677777777777776644
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=257.04 Aligned_cols=276 Identities=17% Similarity=0.170 Sum_probs=184.5
Q ss_pred CCCCCccccCCCCcc----cccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCC
Q 035922 70 ESSHFCKWHESLKLA----GSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNI 145 (581)
Q Consensus 70 ~~~~~c~w~~~~~~~----g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 145 (581)
.....|.|.+.+... ..+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|
T Consensus 25 ~~~~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 25 QASLSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp --CCEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccCCCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 344566676532221 24555443 478899999998887666688888999999999998887777888888999
Q ss_pred CEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCc--cCcCCCCCcEEEccCC-CCCCcCCCccCCCCccccccc
Q 035922 146 ILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPS--SLGNLSSIIRLSLTYN-NIARSIPDTLGYLENLSFLSL 222 (581)
Q Consensus 146 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~l 222 (581)
++|++++|.+++..+..++++++|++|++++|++++ +|. .+.++++|++|++++| .+.+..+..+.++++|++|++
T Consensus 103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence 999999998886555558888899999999888884 444 6888888999998888 466666677888888888888
Q ss_pred CCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCC
Q 035922 223 GGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTL 302 (581)
Q Consensus 223 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L 302 (581)
++|++++..|..+..+++|++|++++|.+. .++..+...++ +|
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~------------------------------------~L 224 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS------------------------------------SV 224 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT------------------------------------TE
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc------------------------------------cc
Confidence 888888777888888888888887777764 33333222233 45
Q ss_pred cEEEccCCcccccCchhh---cCCCCCCEEEeecCcCcc----cccccccCCCCCCeEeccCCcccccCCcc-CCCCCCC
Q 035922 303 ASLFLDNNKIFGSIPPGI---GKLVNLRRLYVWNNKLSG----TIPSAIGDLQNLRMLGMSGNRFSGNIPLS-VGNLKML 374 (581)
Q Consensus 303 ~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L 374 (581)
+.|++++|.+++..+..+ ...+.++.++++++.+++ .+|..+..+++|++|++++|.++ .+|.. |..+++|
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L 303 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence 555555555554332222 234456666666666553 24455555666666666666655 33333 3455555
Q ss_pred cEEeecCcccCC
Q 035922 375 IQLEVSENFLQG 386 (581)
Q Consensus 375 ~~L~L~~n~l~~ 386 (581)
++|++++|++.+
T Consensus 304 ~~L~L~~N~~~~ 315 (353)
T 2z80_A 304 QKIWLHTNPWDC 315 (353)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEeeCCCccC
Confidence 555555555443
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.6e-29 Score=253.86 Aligned_cols=226 Identities=17% Similarity=0.257 Sum_probs=199.1
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
+.++.|++++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 47889999999988 67777888999999999999998 78888889999999999999988 77888889999999999
Q ss_pred cCcccCCCCcccccC---------CCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCee
Q 035922 380 SENFLQGTIPSSLCQ---------CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450 (581)
Q Consensus 380 ~~n~l~~~~p~~l~~---------l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L 450 (581)
++|.+.+.+|..+.. +++|++|++++|++. .+|..+..+++| ++|++++|+++ .+|..+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~-~l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLS-ALGPAIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCC-CCCGGGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCC-cCchhhccCCCCCEE
Confidence 998888888877654 889999999999988 888888888888 89999999998 466678889999999
Q ss_pred eccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC
Q 035922 451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG 530 (581)
Q Consensus 451 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 530 (581)
++++|++.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.+++..|.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999988889988999999999999999998899988999999999999999999999999999999999998877665
Q ss_pred C
Q 035922 531 A 531 (581)
Q Consensus 531 ~ 531 (581)
.
T Consensus 315 ~ 315 (328)
T 4fcg_A 315 Q 315 (328)
T ss_dssp C
T ss_pred H
Confidence 4
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-29 Score=251.21 Aligned_cols=257 Identities=25% Similarity=0.258 Sum_probs=218.7
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcc--cccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEE
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSG--TIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQL 377 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 377 (581)
+++++|++++|.++...+..+..+++|++|++++|+++. ..+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 489999999999985555557899999999999999873 33667778999999999999988 466678899999999
Q ss_pred eecCcccCCCCc-ccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc-cCCccccCCCCCCeeeccCC
Q 035922 378 EVSENFLQGTIP-SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG-SLPIEVGNLKNLGVLDISGN 455 (581)
Q Consensus 378 ~L~~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n 455 (581)
++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..++++ +.|++++|.+++ .+|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 999999986654 578889999999999999998888888889999 899999999986 57888999999999999999
Q ss_pred cCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC-CCCEEECcCCCCCCCCC
Q 035922 456 LLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK-LLENVNLSYNDLGARYV 534 (581)
Q Consensus 456 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~i 534 (581)
++++..|..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..|..+..++ +|++|++++|++++. .
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~-c 264 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT-C 264 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS-G
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc-c
Confidence 99988888999999999999999999987777899999999999999999999999999885 999999999999875 4
Q ss_pred CCc---cccCCcCcccccCCCCCccCCC
Q 035922 535 PTE---GVIKNSSATSVMGNSKLCGGIP 559 (581)
Q Consensus 535 p~~---~~~~~l~~l~~~gN~~lcg~~~ 559 (581)
+.. .-+...+.+.+..+...|..+.
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 265 EHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp GGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ChHHHHHHHHhhhhhhccccccccCCch
Confidence 321 2233445566677777886543
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.9e-32 Score=296.18 Aligned_cols=405 Identities=12% Similarity=0.041 Sum_probs=280.5
Q ss_pred CCchhccCCCCCCEEEccCCCC---CCCCcccCc------------CCCCCCEEEccCCcCcccCCcccCC-CC-CCCEE
Q 035922 110 AIPPEIGRLRRLRGLTLNNNSI---GGEIPATMS------------RCSNIILMDLSVNQLLGNIPPEFGS-LS-KIKDL 172 (581)
Q Consensus 110 ~~p~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~~p~~l~~-l~-~L~~L 172 (581)
..+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 3445567889999999988632 123443333 6788888888888877665555554 33 48888
Q ss_pred ECCCCc-ccc-cCCccCcCCCCCcEEEccCCCCCCc----CCCccCCCCcccccccCCccCCC----CCCccccCCCCcc
Q 035922 173 RSFMNN-LTG-SIPSSLGNLSSIIRLSLTYNNIARS----IPDTLGYLENLSFLSLGGNMLSG----TIPSSIFNRSSIT 242 (581)
Q Consensus 173 ~L~~n~-l~~-~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~ 242 (581)
++++|. ++. .++....++++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 888776 221 1222234677888888888776554 22233456677777777776652 2222333444455
Q ss_pred EEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCccc---ccCchh
Q 035922 243 TFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIF---GSIPPG 319 (581)
Q Consensus 243 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~---~~~p~~ 319 (581)
+|++++|.+.+ +|..+..++ +|++|+++..... +..+..
T Consensus 224 ~L~L~~~~~~~-------------------------------------l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 224 SVKVGDFEILE-------------------------------------LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp EEECSSCBGGG-------------------------------------GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSC
T ss_pred EEeccCccHHH-------------------------------------HHHHHhhhh-HHHhhcccccccccchHHHHHH
Confidence 55544444332 334444443 7777777653322 234456
Q ss_pred hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCC-ccCCCCCCCcEEeecCcccCCCCcccccCCCCC
Q 035922 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIP-LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSL 398 (581)
Q Consensus 320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 398 (581)
+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence 77889999999998644 3677888899999999999999765433 335789999999999544333444555678999
Q ss_pred cEEECCC-----------Cccccc-CCcchhcccCCcceeEcCCCcccccCCccccC-CCCCCeeecc----CCcCccc-
Q 035922 399 IGINFSK-----------NNLSGT-IPPQLFGLSSLSISLDLSRNHFTGSLPIEVGN-LKNLGVLDIS----GNLLSGE- 460 (581)
Q Consensus 399 ~~L~ls~-----------n~l~~~-~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls----~n~l~~~- 460 (581)
++|++++ +.+++. ++.....+++| ++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L-~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC-SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccC-eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 9999993 566543 23334568888 89999999999877777765 8999999996 6778753
Q ss_pred ----cCccccCCCCCcEEECCCCc--CcccCccccc-CCCCCCEEECCCCcccc-ccchhhhcCCCCCEEECcCCCCCCC
Q 035922 461 ----IPISLGSCTSLEKLLMQGNK--FYGPIPSSLR-SLRGLSVWDFAQNNLSG-EIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 461 ----~p~~l~~l~~L~~L~Ls~n~--l~~~~p~~l~-~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
++..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.+++ .++..+.++++|++|++++|++++.
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 44457789999999998654 6666555554 48999999999999987 4566678999999999999998754
Q ss_pred CCCCc-cccCCcCcccccCCCCCc
Q 035922 533 YVPTE-GVIKNSSATSVMGNSKLC 555 (581)
Q Consensus 533 ~ip~~-~~~~~l~~l~~~gN~~lc 555 (581)
.++.. ..+++|+.+++++|. +.
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~-it 526 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYR-AS 526 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCB-CC
T ss_pred HHHHHHHhcCccCeeECcCCc-CC
Confidence 34432 467899999999998 44
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8.5e-29 Score=243.98 Aligned_cols=252 Identities=21% Similarity=0.230 Sum_probs=187.8
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382 (581)
Q Consensus 303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 382 (581)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56667666666 344433 457777888777777666666777777888888887777666777777788888888887
Q ss_pred c-cCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcccc
Q 035922 383 F-LQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI 461 (581)
Q Consensus 383 ~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 461 (581)
. +....|..+..+++|++|++++|++.+..|..+..+++| ++|++++|++++..+..+..+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 6 665556777777888888888888876666777777777 78888888887655666778888888888888888655
Q ss_pred CccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccC
Q 035922 462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIK 541 (581)
Q Consensus 462 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~ 541 (581)
+..+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++... .+......
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-~~~~~~~~ 248 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWA 248 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS-GGGHHHHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC-CCcHHHHH
Confidence 56678888888888888888877788888888888888888888877667788888888888888888765 55444444
Q ss_pred CcCcccccCCCCCccCCC
Q 035922 542 NSSATSVMGNSKLCGGIP 559 (581)
Q Consensus 542 ~l~~l~~~gN~~lcg~~~ 559 (581)
.++......|...|..++
T Consensus 249 ~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp HHHHCCSEECCCBEEESG
T ss_pred HHHhcccccCccccCCch
Confidence 455666677777776443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.2e-28 Score=254.22 Aligned_cols=237 Identities=24% Similarity=0.240 Sum_probs=188.8
Q ss_pred cCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCC
Q 035922 290 LIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG 369 (581)
Q Consensus 290 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 369 (581)
.+|..+. ++++.|++++|.+.+..+..+.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|.
T Consensus 57 ~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 3555544 4788888888888877777888888888888888888877777888888888888888888866666788
Q ss_pred CCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCc-chhcccCCcceeEcCCCcccccCCccccCCCCCC
Q 035922 370 NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP-QLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLG 448 (581)
Q Consensus 370 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~ 448 (581)
.+++|++|++++|+++...+..+..+++|++|++++|...+.++. .+..+++| +.|++++|+++ .+| .+..+++|+
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~-~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR-EIP-NLTPLIKLD 210 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc-ccc-ccCCCcccC
Confidence 888888888888888876666788888888888888554445544 56777788 78888888887 455 477788888
Q ss_pred eeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCC
Q 035922 449 VLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYND 528 (581)
Q Consensus 449 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~ 528 (581)
+|+|++|++++..|..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 88888888887778888888888888888888887777788888888888888888887777777888888888888888
Q ss_pred CCCC
Q 035922 529 LGAR 532 (581)
Q Consensus 529 l~~~ 532 (581)
+...
T Consensus 291 ~~Cd 294 (440)
T 3zyj_A 291 WNCN 294 (440)
T ss_dssp EECS
T ss_pred ccCC
Confidence 7643
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-28 Score=244.70 Aligned_cols=250 Identities=22% Similarity=0.214 Sum_probs=219.0
Q ss_pred CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccccc--CCccCCCCCCCcEEee
Q 035922 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN--IPLSVGNLKMLIQLEV 379 (581)
Q Consensus 302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 379 (581)
-+.++.+++.++ .+|..+ .++|++|++++|+++...+..+..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 457888888887 556544 36899999999999965555689999999999999998733 3566778999999999
Q ss_pred cCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS 458 (581)
Q Consensus 380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 458 (581)
++|.+. .+|..+..+++|++|++++|++.+..+ ..+..++++ ++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC-CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC-CEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 999998 467779999999999999999985544 578889999 89999999999888889999999999999999998
Q ss_pred c-ccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-
Q 035922 459 G-EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT- 536 (581)
Q Consensus 459 ~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~- 536 (581)
+ .+|..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++. .|.
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC-SSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc-CHHH
Confidence 6 6888999999999999999999988899999999999999999999988888899999999999999999987 664
Q ss_pred cccc-CCcCcccccCCCCCccC
Q 035922 537 EGVI-KNSSATSVMGNSKLCGG 557 (581)
Q Consensus 537 ~~~~-~~l~~l~~~gN~~lcg~ 557 (581)
...+ .+++.++++||++-|..
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSG
T ss_pred HHhhhccCCEEEccCCCeeccc
Confidence 4555 58999999999988863
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.7e-28 Score=254.11 Aligned_cols=236 Identities=21% Similarity=0.215 Sum_probs=183.0
Q ss_pred CchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCC
Q 035922 291 IPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGN 370 (581)
Q Consensus 291 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 370 (581)
+|..+. +++++|++++|.+++..+..+.++++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|..
T Consensus 69 iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 69 VPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp CCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred cCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 454443 47888888888888777777888888888888888888777778888888888888888888666666778
Q ss_pred CCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCc-chhcccCCcceeEcCCCcccccCCccccCCCCCCe
Q 035922 371 LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPP-QLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGV 449 (581)
Q Consensus 371 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~ 449 (581)
+++|++|++++|+++...+..+..+++|++|++++|...+.++. .+..+++| +.|++++|++++ +| .+..+++|++
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~-~~-~~~~l~~L~~ 222 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKD-MP-NLTPLVGLEE 222 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSS-CC-CCTTCTTCCE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCcccc-cc-cccccccccE
Confidence 88888888888888866666777888888888888544445544 46677777 788888888874 44 4677788888
Q ss_pred eeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCC
Q 035922 450 LDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529 (581)
Q Consensus 450 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l 529 (581)
|+|++|++++..|..|..+++|+.|++++|++.+..|..|..+++|+.|++++|++++..+..+..+++|++|++++|++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 88888888877777788888888888888888877777788888888888888888876667777788888888888877
Q ss_pred CCC
Q 035922 530 GAR 532 (581)
Q Consensus 530 ~~~ 532 (581)
...
T Consensus 303 ~Cd 305 (452)
T 3zyi_A 303 NCD 305 (452)
T ss_dssp ECS
T ss_pred CCC
Confidence 654
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9e-29 Score=251.61 Aligned_cols=252 Identities=19% Similarity=0.168 Sum_probs=117.9
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555544333344555555555555555554444445555555555555555543222224445555555555
Q ss_pred CcccCCCCc-ccccCCCCCcEEECCCCc-ccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922 381 ENFLQGTIP-SSLCQCKSLIGINFSKNN-LSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS 458 (581)
Q Consensus 381 ~n~l~~~~p-~~l~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 458 (581)
+|++++..+ ..+..+++|++|++++|+ +.+..+..+..++++ +.|++++|++++..|..+..+++|++|++++|+++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL-EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE-EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC-CEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 555543222 244445555555555552 332333444444555 45555555555444555555555555555555554
Q ss_pred cccCccccCCCCCcEEECCCCcCcccCcccc---cCCCCCCEEECCCCcccc----ccchhhhcCCCCCEEECcCCCCCC
Q 035922 459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSL---RSLRGLSVWDFAQNNLSG----EIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
...+..+..+++|+.|++++|.+.+..+..+ .....++.++++++.+.+ .+|..+..+++|++|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 2222222334555555555555544333222 123444455555554443 244445555555555555555542
Q ss_pred CCCCCc--cccCCcCcccccCCCCCc
Q 035922 532 RYVPTE--GVIKNSSATSVMGNSKLC 555 (581)
Q Consensus 532 ~~ip~~--~~~~~l~~l~~~gN~~lc 555 (581)
+|.. +.+++|+.+++.+||+.|
T Consensus 292 --i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 292 --VPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp --CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --cCHHHHhcCCCCCEEEeeCCCccC
Confidence 3331 344455555555555444
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.5e-28 Score=263.70 Aligned_cols=146 Identities=20% Similarity=0.265 Sum_probs=100.6
Q ss_pred CCCCCCCCCCCCCccccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcC
Q 035922 62 FGVLGSWNESSHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSR 141 (581)
Q Consensus 62 ~~~l~~w~~~~~~c~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 141 (581)
......|....++|.|.+......... .....++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .
T Consensus 9 ~~~w~~W~~~~~~~~~~~r~~~~~~~~--~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~ 79 (622)
T 3g06_A 9 DAVWSAWRRAAPAEESRGRAAVVQKMR--ACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---L 79 (622)
T ss_dssp -CHHHHHHHTCCGGGHHHHHHHHHHHH--HHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---C
T ss_pred HHHHHHHHhcCCcchhccccccCcccc--cccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---c
Confidence 345567877778899975221111111 112235899999999998 6777665 79999999999998 5565 5
Q ss_pred CCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccc
Q 035922 142 CSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLS 221 (581)
Q Consensus 142 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 221 (581)
+++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~ 147 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence 788999999999887 4554 67888888888888874 444 55777788888777754 3432 35666666
Q ss_pred cCCccCC
Q 035922 222 LGGNMLS 228 (581)
Q Consensus 222 l~~n~l~ 228 (581)
+++|+++
T Consensus 148 Ls~N~l~ 154 (622)
T 3g06_A 148 VSDNQLA 154 (622)
T ss_dssp CCSSCCS
T ss_pred CcCCcCC
Confidence 6666665
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=249.29 Aligned_cols=211 Identities=21% Similarity=0.182 Sum_probs=161.4
Q ss_pred chhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCC
Q 035922 292 PECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNL 371 (581)
Q Consensus 292 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 371 (581)
+..+.++. +|++|++++|.+.+..+..+..+++|++|+|++|++++..+..|..+++|++|++++|.+++..+..|..+
T Consensus 81 ~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 81 VNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp TTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred HHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 33444443 78888888888877777778888888888888888886666677888888888888888876666677788
Q ss_pred CCCcEEeecCcc-cCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCee
Q 035922 372 KMLIQLEVSENF-LQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVL 450 (581)
Q Consensus 372 ~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L 450 (581)
++|++|++++|. +....+..+..+++|++|++++|++. .+| .+..+++| +.|++++|++++..|..|..+++|++|
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc-CEEECCCCccCccChhhhccCccCCEE
Confidence 888888888754 44333446777888888888888887 555 36677777 788888888887777788888888888
Q ss_pred eccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 451 DISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 451 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
++++|++++..+..|..+++|+.|+|++|++++..++.|..+++|+.|++++|.+.
T Consensus 237 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 88888888777777888888888888888888776777788888888888888764
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-27 Score=250.06 Aligned_cols=247 Identities=20% Similarity=0.207 Sum_probs=130.6
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382 (581)
Q Consensus 303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 382 (581)
..++.++..++ .+|..+. +++++|+|++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 34444444444 3343222 45555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCC-cccccCCccccCCCCCCeeeccCCcCcccc
Q 035922 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRN-HFTGSLPIEVGNLKNLGVLDISGNLLSGEI 461 (581)
Q Consensus 383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 461 (581)
++++..+..+..+++|++|++++|++.+..+..+..+++| +.|++++| .+....+..+..+++|++|++++|++++ +
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL-MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC-CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc-cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 5554444445555555555555555553333345555555 55555553 2332222335555555555555555552 2
Q ss_pred CccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-cccc
Q 035922 462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVI 540 (581)
Q Consensus 462 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~ 540 (581)
| .+..+++|+.|++++|++.+..|..|..+++|+.|++++|.+.+..|..|..+++|++|++++|++++. .+. ...+
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l 289 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL-PHDLFTPL 289 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CTTSSTTC
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc-ChHHhccc
Confidence 3 345555555555555555555555555555555555555555555555555555555555555555543 221 2344
Q ss_pred CCcCcccccCCCCCcc
Q 035922 541 KNSSATSVMGNSKLCG 556 (581)
Q Consensus 541 ~~l~~l~~~gN~~lcg 556 (581)
++|+.+++.+||+.|.
T Consensus 290 ~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCD 305 (452)
T ss_dssp TTCCEEECCSSCEECS
T ss_pred cCCCEEEccCCCcCCC
Confidence 5555555555555553
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=235.76 Aligned_cols=248 Identities=20% Similarity=0.189 Sum_probs=211.1
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCc-ccccCCccCCCCCCCcEEe
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR-FSGNIPLSVGNLKMLIQLE 378 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~ 378 (581)
+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 489999999999998777889999999999999999998888899999999999999997 7766688899999999999
Q ss_pred ecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCc
Q 035922 379 VSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLS 458 (581)
Q Consensus 379 L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 458 (581)
+++|.+++..|..+..+++|++|++++|++.+..+..+..++++ +.|++++|++++..+..+..+++|++|++++|+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999998888889999999999999999996666668889999 89999999999766667999999999999999999
Q ss_pred cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc-
Q 035922 459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE- 537 (581)
Q Consensus 459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~- 537 (581)
+..|..+..+++|+.|++++|++.+..++.+..+++|+.|++++|.+....+.. .-...++.+..+.+.+... .|..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~-~p~~l 268 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCS-LPQRL 268 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEE-ESGGG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccC-CchHh
Confidence 888999999999999999999999877788999999999999999997654421 1112344455778888877 7753
Q ss_pred --cccCCcCcccccC
Q 035922 538 --GVIKNSSATSVMG 550 (581)
Q Consensus 538 --~~~~~l~~l~~~g 550 (581)
..+..++..++.|
T Consensus 269 ~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 269 AGRDLKRLAANDLQG 283 (285)
T ss_dssp TTCBGGGSCGGGSCC
T ss_pred CCcChhhcCHHHhcc
Confidence 2334444444444
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.1e-29 Score=246.93 Aligned_cols=232 Identities=20% Similarity=0.199 Sum_probs=165.5
Q ss_pred cCchhhhhcccCCcEEEccCCccc-ccCchhhc-------CCCCCCEEEeecCcCcccccccc--cCCCCCCeEeccCCc
Q 035922 290 LIPECISNFSTTLASLFLDNNKIF-GSIPPGIG-------KLVNLRRLYVWNNKLSGTIPSAI--GDLQNLRMLGMSGNR 359 (581)
Q Consensus 290 ~~p~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~ 359 (581)
.+|..+.. .|+.|++++|.+. ..+|..+. .+++|++|++++|++++.+|..+ ..+++|++|++++|.
T Consensus 56 ~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 56 ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence 34554443 3677777777773 34555554 67788888888888887777765 778888888888888
Q ss_pred ccccCCccCCCC-----CCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccccc--CCcch--hcccCCcceeEcCC
Q 035922 360 FSGNIPLSVGNL-----KMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT--IPPQL--FGLSSLSISLDLSR 430 (581)
Q Consensus 360 l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~p~~~--~~l~~L~~~L~Ls~ 430 (581)
+++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++|++.+. ++..+ ..++++ ++|++++
T Consensus 133 l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~L~~ 210 (312)
T 1wwl_A 133 WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL-QVLALRN 210 (312)
T ss_dssp CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC-CEEECTT
T ss_pred Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC-CEEECCC
Confidence 8765 6666555 7888888888888877777788888888888888887654 23333 667777 7788888
Q ss_pred Ccccc--cCC-ccccCCCCCCeeeccCCcCccccC-ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 431 NHFTG--SLP-IEVGNLKNLGVLDISGNLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 431 n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
|++++ .++ ..+.++++|++|++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|+.||+++|+++
T Consensus 211 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred CcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence 87772 222 233466788888888888876664 44556778888888888887 6666655 77888888888887
Q ss_pred cccchhhhcCCCCCEEECcCCCCCC
Q 035922 507 GEIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 507 ~~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
+. |. +..+++|++|++++|++++
T Consensus 288 ~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 288 RN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CC-hh-HhhCCCCCEEeccCCCCCC
Confidence 65 55 7778888888888888765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.6e-28 Score=244.19 Aligned_cols=261 Identities=18% Similarity=0.118 Sum_probs=205.6
Q ss_pred eEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922 279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358 (581)
Q Consensus 279 ~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 358 (581)
..+++.+.+.......+ ...++|++|++++|.+++..|..+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 14 i~~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHHHHHHHHH-TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred EeeccccchhhhHHHHh-ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 44555555543333333 333489999999999998877889999999999999999986554 889999999999999
Q ss_pred cccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922 359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP 438 (581)
Q Consensus 359 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p 438 (581)
.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++.+..+..+..++++ +.|++++|.+++..+
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNF 161 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCEEEG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCcccH
Confidence 988533 348999999999999866543 36789999999999987777788888889 899999999997777
Q ss_pred cccc-CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922 439 IEVG-NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK 517 (581)
Q Consensus 439 ~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 517 (581)
..+. .+++|++|++++|++++. +. ...+++|++|++++|++.+. |..+..+++|+.|++++|.++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 6664 789999999999999854 32 34589999999999999854 445889999999999999998 5788888999
Q ss_pred CCCEEECcCCCCC-CCCCCC-ccccCCcCcccccCCCCCcc
Q 035922 518 LLENVNLSYNDLG-ARYVPT-EGVIKNSSATSVMGNSKLCG 556 (581)
Q Consensus 518 ~L~~L~ls~N~l~-~~~ip~-~~~~~~l~~l~~~gN~~lcg 556 (581)
+|++|++++|++. +. +|. ...++.++.+++.+|+.+.|
T Consensus 238 ~L~~L~l~~N~~~~~~-~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGT-LRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TCCEEECTTCCCBHHH-HHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEccCCCccCcC-HHHHHhccccceEEECCCchhccC
Confidence 9999999999998 43 554 35566777788875544444
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=7.4e-29 Score=247.60 Aligned_cols=243 Identities=19% Similarity=0.180 Sum_probs=209.2
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc-cccccccc-------CCCCCCeEeccCCcccccCCccC--C
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS-GTIPSAIG-------DLQNLRMLGMSGNRFSGNIPLSV--G 369 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~--~ 369 (581)
++|+.|++++|.+ .+|..+... |++|++++|+++ ..+|..+. .+++|++|++++|.+++.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3799999999999 677766654 899999999984 45666555 79999999999999999888876 8
Q ss_pred CCCCCcEEeecCcccCCCCcccccCC-----CCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc--CCccc-
Q 035922 370 NLKMLIQLEVSENFLQGTIPSSLCQC-----KSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS--LPIEV- 441 (581)
Q Consensus 370 ~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~--~p~~l- 441 (581)
.+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..+..++++ +.|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL-STLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC-CEEECCSCTTCHHHHHHHHSC
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC-CEEECCCCCcCcchHHHHHHH
Confidence 999999999999999987 7777776 999999999999997777899999999 9999999998865 33444
Q ss_pred -cCCCCCCeeeccCCcCcc--ccC-ccccCCCCCcEEECCCCcCcccCc-ccccCCCCCCEEECCCCccccccchhhhcC
Q 035922 442 -GNLKNLGVLDISGNLLSG--EIP-ISLGSCTSLEKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEIPKFLAGF 516 (581)
Q Consensus 442 -~~l~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l 516 (581)
..+++|++|++++|++++ .++ ..+..+++|++|++++|++.+.+| ..+..+++|+.|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 889999999999999983 222 344688999999999999998775 46677899999999999998 7787766
Q ss_pred CCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCC
Q 035922 517 KLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSK 553 (581)
Q Consensus 517 ~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~ 553 (581)
++|++|++++|++++ +|....+++|+.+++++|+.
T Consensus 274 ~~L~~L~Ls~N~l~~--~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SEEEEEECCSSCCCS--CCCTTTSCEEEEEECTTCTT
T ss_pred CCceEEECCCCCCCC--ChhHhhCCCCCEEeccCCCC
Confidence 899999999999988 57788889999999999984
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-27 Score=253.10 Aligned_cols=243 Identities=19% Similarity=0.122 Sum_probs=208.5
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
++|++|++++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 389999999999998888899999999999999999997665 8899999999999999985432 389999999
Q ss_pred cCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCcccc-CCCCCCeeeccCCcCc
Q 035922 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVG-NLKNLGVLDISGNLLS 458 (581)
Q Consensus 380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~ 458 (581)
++|.+++..+. .+++|++|++++|.+.+..|..+..++.| +.|++++|.+++..|..+. .+++|++|+|++|.++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 99999976554 46889999999999998888899999999 8999999999988888876 7999999999999999
Q ss_pred cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCC-CCCCCC-
Q 035922 459 GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLG-ARYVPT- 536 (581)
Q Consensus 459 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~ip~- 536 (581)
+..+ +..+++|+.|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +. +|.
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~-~~~~ 257 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT-LRDF 257 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH-HHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc-hHHH
Confidence 6533 4469999999999999997555 58999999999999999995 7888999999999999999998 33 543
Q ss_pred ccccCCcCccccc-------CCCCCccCC
Q 035922 537 EGVIKNSSATSVM-------GNSKLCGGI 558 (581)
Q Consensus 537 ~~~~~~l~~l~~~-------gN~~lcg~~ 558 (581)
...++.++.+++. +|+..|+..
T Consensus 258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HHhCCCCcEEeccccccccCCCcccccCC
Confidence 3445566667775 788888654
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=9.8e-26 Score=243.53 Aligned_cols=269 Identities=25% Similarity=0.346 Sum_probs=147.1
Q ss_pred CCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEc
Q 035922 119 RRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSL 198 (581)
Q Consensus 119 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 198 (581)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46888899888888 6776665 78888888888887 4454 4677778888777776 4554 5567777777
Q ss_pred cCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcce
Q 035922 199 TYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTE 278 (581)
Q Consensus 199 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 278 (581)
++|.+++. |. .+++|++|++++|+++ .+|..+ +
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~-~lp~~l---~--------------------------------------- 141 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLT-SLPVLP---P--------------------------------------- 141 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCS-CCCCCC---T---------------------------------------
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCC-cCCCCC---C---------------------------------------
Confidence 77776542 32 3455555666555554 222211 1
Q ss_pred eEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCC
Q 035922 279 LLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGN 358 (581)
Q Consensus 279 ~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 358 (581)
+|++|++++|.+++ +|. .+++|+.|++++|++++ +| ..+++|+.|++++|
T Consensus 142 ----------------------~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 142 ----------------------GLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN 191 (622)
T ss_dssp ----------------------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred ----------------------CCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC
Confidence 34444444444332 121 12334444444444442 22 22334444444444
Q ss_pred cccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCC
Q 035922 359 RFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLP 438 (581)
Q Consensus 359 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p 438 (581)
.+++ +|. ..+ +|+.|++++|.+. .+|.. ++++ +.|++++|++++ +|
T Consensus 192 ~l~~-l~~---~~~------------------------~L~~L~L~~N~l~-~l~~~---~~~L-~~L~Ls~N~L~~-lp 237 (622)
T 3g06_A 192 QLAS-LPT---LPS------------------------ELYKLWAYNNRLT-SLPAL---PSGL-KELIVSGNRLTS-LP 237 (622)
T ss_dssp CCSC-CCC---CCT------------------------TCCEEECCSSCCS-SCCCC---CTTC-CEEECCSSCCSC-CC
T ss_pred CCCC-CCC---ccc------------------------hhhEEECcCCccc-ccCCC---CCCC-CEEEccCCccCc-CC
Confidence 4432 221 113 3334444444333 22321 1233 455555555552 33
Q ss_pred ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922 439 IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK 517 (581)
Q Consensus 439 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 517 (581)
..+++|+.|++++|+++ .+|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus 238 ---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 23456666666666666 4444 4566666677777666 5566666677777777777777666666655444
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6.6e-30 Score=278.71 Aligned_cols=423 Identities=13% Similarity=0.107 Sum_probs=282.7
Q ss_pred cccCCCCCcEEECCCCCCCC---CCc------------hhccCCCCCCEEEccCCCCCCCCcccCc-CCCCCCEEEccCC
Q 035922 90 YIGNLSFLRRLHLDNNNFTH---AIP------------PEIGRLRRLRGLTLNNNSIGGEIPATMS-RCSNIILMDLSVN 153 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~l~~---~~p------------~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n 153 (581)
.+.++++|++|+++++.... ..| .....+++|++|+|++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 35677899999999875221 112 1234688999999999998877666665 6899999999999
Q ss_pred -cCccc-CCcccCCCCCCCEEECCCCcccccCCccC----cCCCCCcEEEccCCC--CCCc-CCCccCCCCcccccccCC
Q 035922 154 -QLLGN-IPPEFGSLSKIKDLRSFMNNLTGSIPSSL----GNLSSIIRLSLTYNN--IARS-IPDTLGYLENLSFLSLGG 224 (581)
Q Consensus 154 -~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~l~~ 224 (581)
.++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. ++.. ++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 45432 44455678999999999999876544443 367799999999886 2211 112234568999999998
Q ss_pred ccCCCCCCccccCCCCccEEEccccc-------CcccCChhhhcCCCCCceee-ccccCcceeEeccCCcCcccCchhhh
Q 035922 225 NMLSGTIPSSIFNRSSITTFSVVLNR-------MQGNIPLDFGFTLPNLQHFG-IVFNNFTELLLLNDNNFGGLIPECIS 296 (581)
Q Consensus 225 n~l~~~~p~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~~l~~L~~L~-l~~n~~~~~l~l~~n~l~~~~p~~~~ 296 (581)
|...+.++..+..+++|+++++..+. +.+ ++..+ ..+++|+.+. +... ..+.++..+.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l-~~~~~L~~Ls~~~~~------------~~~~l~~~~~ 286 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVAL-SGCKELRCLSGFWDA------------VPAYLPAVYS 286 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHH-HTCTTCCEEECCBTC------------CGGGGGGGHH
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHH-hcCCCcccccCCccc------------chhhHHHHHH
Confidence 84333477777888899999865543 222 22233 3477777762 2211 1123344444
Q ss_pred hcccCCcEEEccCCcccccC-chhhcCCCCCCEEEeecCcCccc-ccccccCCCCCCeEeccC---------CcccccCC
Q 035922 297 NFSTTLASLFLDNNKIFGSI-PPGIGKLVNLRRLYVWNNKLSGT-IPSAIGDLQNLRMLGMSG---------NRFSGNIP 365 (581)
Q Consensus 297 ~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~---------n~l~~~~~ 365 (581)
.+ ++|++|++++|.+++.. ...+..+++|++|++++| ++.. ++.....+++|++|++++ +.+++...
T Consensus 287 ~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 44 48999999999876542 333568899999999988 4422 233334588999998844 34443222
Q ss_pred ccC-CCCCCCcEEeecCcccCCCCccccc-CCCCCcEEECC--C----Ccccc-----cCCcchhcccCCcceeEcCCCc
Q 035922 366 LSV-GNLKMLIQLEVSENFLQGTIPSSLC-QCKSLIGINFS--K----NNLSG-----TIPPQLFGLSSLSISLDLSRNH 432 (581)
Q Consensus 366 ~~~-~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ls--~----n~l~~-----~~p~~~~~l~~L~~~L~Ls~n~ 432 (581)
..+ ..+++|+.|.+..|.+++..+..+. .+++|++|+++ + +.+++ .++..+..+++| +.|++++ .
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L-~~L~L~~-~ 442 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL-RRLSLSG-L 442 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC-CEEECCS-S
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc-cEEeecC-c
Confidence 222 2478889998888888765555554 47889999988 3 44441 122235567778 8888877 6
Q ss_pred ccccCCccccC-CCCCCeeeccCCcCccccCccc-cCCCCCcEEECCCCcCcccCcc-cccCCCCCCEEECCCCcccccc
Q 035922 433 FTGSLPIEVGN-LKNLGVLDISGNLLSGEIPISL-GSCTSLEKLLMQGNKFYGPIPS-SLRSLRGLSVWDFAQNNLSGEI 509 (581)
Q Consensus 433 l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~ 509 (581)
+++..+..+.. +++|++|++++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|+.|++++|.++...
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 66555555554 7888999999888876555555 6688899999999888654443 3455788899999998886544
Q ss_pred chhh-hcCCCCCEEECcCCCCC
Q 035922 510 PKFL-AGFKLLENVNLSYNDLG 530 (581)
Q Consensus 510 p~~l-~~l~~L~~L~ls~N~l~ 530 (581)
...+ ..++.|+...+..+.-.
T Consensus 523 ~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp HHHHHHHCTTEEEEEECSSSCG
T ss_pred HHHHHHhCCCCEEEEecCCCcc
Confidence 4445 56777777666665443
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.1e-29 Score=274.69 Aligned_cols=422 Identities=13% Similarity=0.093 Sum_probs=294.2
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCC---CCcc------------cCcCCCCCCEEEccCCcCcccCCcc
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGG---EIPA------------TMSRCSNIILMDLSVNQLLGNIPPE 162 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~---~~p~------------~l~~l~~L~~L~Ls~n~l~~~~p~~ 162 (581)
+.++++..... .....+..+++|++|+++++.... ..|. ....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555443322 223356788999999999975321 2221 1346889999999999998776666
Q ss_pred cC-CCCCCCEEECCCC-ccccc-CCccCcCCCCCcEEEccCCCCCCcCCCcc----CCCCcccccccCCcc--CCC-CCC
Q 035922 163 FG-SLSKIKDLRSFMN-NLTGS-IPSSLGNLSSIIRLSLTYNNIARSIPDTL----GYLENLSFLSLGGNM--LSG-TIP 232 (581)
Q Consensus 163 l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~l~~n~--l~~-~~p 232 (581)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +.. .++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 65 6899999999999 45532 44445589999999999999876544433 367799999999987 221 112
Q ss_pred ccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEE-EccCCc
Q 035922 233 SSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASL-FLDNNK 311 (581)
Q Consensus 233 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L-~L~~n~ 311 (581)
.....+++|++|++++|...+.++..+.. +++|+.|++..+.. ++..+.+.+ ++..+.++. +|+.| .+.+..
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~----~~~~~~~~~-l~~~l~~~~-~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQR-APQLEELGTGGYTA----EVRPDVYSG-LSVALSGCK-ELRCLSGFWDAV 277 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHH-CTTCSEEECSBCCC----CCCHHHHHH-HHHHHHTCT-TCCEEECCBTCC
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhc-CCcceEcccccccC----ccchhhHHH-HHHHHhcCC-CcccccCCcccc
Confidence 22345799999999988433345554444 89999998765532 233334443 334555554 88888 444433
Q ss_pred ccccCchhhcCCCCCCEEEeecCcCcccc-cccccCCCCCCeEeccCCccccc-CCccCCCCCCCcEEeecC--------
Q 035922 312 IFGSIPPGIGKLVNLRRLYVWNNKLSGTI-PSAIGDLQNLRMLGMSGNRFSGN-IPLSVGNLKMLIQLEVSE-------- 381 (581)
Q Consensus 312 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~-------- 381 (581)
. +.++..+..+++|++|++++|.+++.. ...+..+++|++|++++| +... ++.....+++|++|++.+
T Consensus 278 ~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~ 355 (594)
T 2p1m_B 278 P-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEP 355 (594)
T ss_dssp G-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSC
T ss_pred h-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccccc
Confidence 2 345665667899999999999977543 333568899999999998 4322 222233588999999944
Q ss_pred -cccCCCCccccc-CCCCCcEEECCCCcccccCCcchh-cccCCcceeEcC--C----Ccccc-----cCCccccCCCCC
Q 035922 382 -NFLQGTIPSSLC-QCKSLIGINFSKNNLSGTIPPQLF-GLSSLSISLDLS--R----NHFTG-----SLPIEVGNLKNL 447 (581)
Q Consensus 382 -n~l~~~~p~~l~-~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~~L~Ls--~----n~l~~-----~~p~~l~~l~~L 447 (581)
+.+++.....+. .+++|++|.+..|.+++..+..+. .+++| +.|+++ + +.+++ .++..+..+++|
T Consensus 356 ~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 356 NVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 344433222232 488999999988998866666555 57888 899999 4 55552 122235678999
Q ss_pred CeeeccCCcCccccCccccC-CCCCcEEECCCCcCcccCcccc-cCCCCCCEEECCCCccccccch-hhhcCCCCCEEEC
Q 035922 448 GVLDISGNLLSGEIPISLGS-CTSLEKLLMQGNKFYGPIPSSL-RSLRGLSVWDFAQNNLSGEIPK-FLAGFKLLENVNL 524 (581)
Q Consensus 448 ~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~L~~L~l 524 (581)
+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|++|++
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWM 513 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEE
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEee
Confidence 9999987 777666666655 8999999999999987665555 6789999999999999765444 4456899999999
Q ss_pred cCCCCCC
Q 035922 525 SYNDLGA 531 (581)
Q Consensus 525 s~N~l~~ 531 (581)
++|+++.
T Consensus 514 ~~~~~~~ 520 (594)
T 2p1m_B 514 SSCSVSF 520 (594)
T ss_dssp ESSCCBH
T ss_pred eCCCCCH
Confidence 9999853
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.5e-27 Score=234.54 Aligned_cols=242 Identities=19% Similarity=0.185 Sum_probs=207.6
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+++..+++.+.+.......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56777888888776655666778899999999999998888899999999999999999987654 8899999999999
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|.+++.. ..++|++|++++|++.+..+.. ++.+ +.|++++|++++..+..+..+++|++|++++|++++.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L-~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSC-EEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCC-CEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99998532 3489999999999998655443 5667 8999999999987788899999999999999999987
Q ss_pred cCccc-cCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC-cc
Q 035922 461 IPISL-GSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EG 538 (581)
Q Consensus 461 ~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~ 538 (581)
.+..+ ..+++|++|++++|.+.+. +. ...+++|+.|++++|.+++. |..+..+++|++|++++|++++ +|. ..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~--l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL--IEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE--ECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc--hhhHhh
Confidence 77776 4789999999999999865 43 34699999999999999964 5559999999999999999996 554 56
Q ss_pred ccCCcCcccccCCCCCccCC
Q 035922 539 VIKNSSATSVMGNSKLCGGI 558 (581)
Q Consensus 539 ~~~~l~~l~~~gN~~lcg~~ 558 (581)
.+++|+.+++++|+..|+.+
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHH
T ss_pred cCCCCCEEEccCCCccCcCH
Confidence 78899999999999998754
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.4e-27 Score=247.62 Aligned_cols=223 Identities=21% Similarity=0.204 Sum_probs=194.9
Q ss_pred CCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEE
Q 035922 322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGI 401 (581)
Q Consensus 322 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 401 (581)
.+++|++|+|++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34589999999999998888899999999999999999997665 889999999999999998543 23899999
Q ss_pred ECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCcccc-CCCCCcEEECCCCc
Q 035922 402 NFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLG-SCTSLEKLLMQGNK 480 (581)
Q Consensus 402 ~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~ 480 (581)
++++|.+.+..+.. ++.+ +.|++++|.+++..|..++.+++|++|++++|.+++.+|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~~---l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECC---CSSC-EEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCccc---cCCC-CEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999998655543 5677 8999999999998898999999999999999999998888886 79999999999999
Q ss_pred CcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccCCC
Q 035922 481 FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGGIP 559 (581)
Q Consensus 481 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~~~ 559 (581)
+++..+ +..+++|+.|++++|.+++..| .+..+++|+.|++++|.+++. .+....+++|+.+++.||++.|+.+|
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcchH
Confidence 997633 4469999999999999997554 589999999999999999974 33456788999999999999987653
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.3e-25 Score=218.21 Aligned_cols=227 Identities=19% Similarity=0.149 Sum_probs=161.8
Q ss_pred EEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCccc
Q 035922 305 LFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL 384 (581)
Q Consensus 305 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 384 (581)
++..+..+. .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 334444443 3444332 4577777777777655555666777777777777777665555667777777777777777
Q ss_pred CCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc-CCccccCCCCCCeeeccCCcCccccCc
Q 035922 385 QGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS-LPIEVGNLKNLGVLDISGNLLSGEIPI 463 (581)
Q Consensus 385 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 463 (581)
++..+..+..+++|++|++++|.+.+..+..+..++++ ++|++++|++++. +|..+.++++|++|++++|++++..+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 76666667777777777777777765555466677777 7777777777753 577788888888888888888866666
Q ss_pred cccCCCCCc----EEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCc
Q 035922 464 SLGSCTSLE----KLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTE 537 (581)
Q Consensus 464 ~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~ 537 (581)
.+..+++|+ .|++++|++.+..+..+.. .+|+.|++++|.+++..+..+..+++|++|++++|++.+. .|..
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-c~~l 243 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRI 243 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC-TTTT
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc-CCch
Confidence 777666666 8888999888665555443 4799999999999877667778899999999999999887 6644
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.3e-24 Score=212.89 Aligned_cols=209 Identities=20% Similarity=0.155 Sum_probs=186.1
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 48999999999999877778999999999999999999777778999999999999999999888888999999999999
Q ss_pred cCcccCCCCcccccCCCCCcEEECCCCcccc-cCCcchhcccCCcceeEcCCCcccccCCccccCCCCCC----eeeccC
Q 035922 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSG-TIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLG----VLDISG 454 (581)
Q Consensus 380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~Ls~ 454 (581)
++|.+.+..+..+..+++|++|++++|++.+ .+|..+..++++ +.|++++|++++..+..+..+++|+ +|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 9999998777789999999999999999985 368999999999 8999999999987777888777777 899999
Q ss_pred CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccc
Q 035922 455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIP 510 (581)
Q Consensus 455 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 510 (581)
|++++..+..+ ...+|+.|++++|++++..+..+..+++|+.|++++|.+.+..|
T Consensus 187 n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99995555444 45589999999999997777778999999999999999987544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.2e-24 Score=212.48 Aligned_cols=205 Identities=23% Similarity=0.194 Sum_probs=168.4
Q ss_pred hcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCc
Q 035922 320 IGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI 399 (581)
Q Consensus 320 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 399 (581)
++++++++++++++++++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 567788999999999888 5565543 688999999999987777888889999999999998885433 26788899
Q ss_pred EEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCC
Q 035922 400 GINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGN 479 (581)
Q Consensus 400 ~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 479 (581)
+|++++|++. .+|..+..++++ +.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999888 778888888888 88999999888766677888888999999998888666667788888888999888
Q ss_pred cCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 480 KFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 480 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
++.+..+..|..+++|+.|++++|++. .+|..+...++|+++++++|++...
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 888666666788888888899888887 6777777788888888888888653
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8.7e-24 Score=206.27 Aligned_cols=204 Identities=22% Similarity=0.207 Sum_probs=113.6
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
..+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.+++..+..|..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~---------- 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---------- 83 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS----------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC----------
Confidence 3455555555555 2333222 34555555555555443344455555555555555544333333344
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+++|++|++++|++.+..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++.
T Consensus 84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNL-AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCSSC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred --------------CCCCCEEECCCCcCCcCCHhHcccccCC-CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 4444444444444443223333444455 5555555555544445556666666666666666644
Q ss_pred cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
.+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 444566666777777777766655555566677777777777777655555566677777777777776554
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.3e-23 Score=205.11 Aligned_cols=204 Identities=18% Similarity=0.137 Sum_probs=172.1
Q ss_pred CCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEc
Q 035922 349 NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDL 428 (581)
Q Consensus 349 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~L 428 (581)
..+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|++.+..+..+..++++ ++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L-~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL-ETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC-CEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC-CEEEC
Confidence 4567777777776 4554443 568888888888886666678888899999999998884434445778899 89999
Q ss_pred CCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccc
Q 035922 429 SRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGE 508 (581)
Q Consensus 429 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 508 (581)
++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99999977777789999999999999999988888899999999999999999977777799999999999999999988
Q ss_pred cchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922 509 IPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 509 ~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~ 557 (581)
.+..+..+++|++|++++|++++. .+. ...+++|+.+++.+||+.|+.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcC-CHHHhccccCCCEEEecCCCeeCCC
Confidence 778899999999999999999874 332 466889999999999999875
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=1.3e-23 Score=206.93 Aligned_cols=200 Identities=22% Similarity=0.198 Sum_probs=174.9
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
+++++++++++.++ .+|..+. +++++|++++|++++..+..+..+++|++|++++|.+++..+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 38999999999998 5665553 689999999999998888899999999999999999986443 278899999999
Q ss_pred cCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcc
Q 035922 380 SENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSG 459 (581)
Q Consensus 380 ~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 459 (581)
++|+++ .+|..+..+++|++|++++|++++..+..+..+++| +.|++++|++++..+..|..+++|+.|++++|++++
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 999998 678888899999999999999996666788899999 899999999997777778899999999999999996
Q ss_pred ccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922 460 EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG 507 (581)
Q Consensus 460 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 507 (581)
..+..+..+++|+.|++++|++. .+|..+..++.|+.+++++|.+..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 65666788999999999999998 678888888999999999998864
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=8.7e-24 Score=206.46 Aligned_cols=203 Identities=20% Similarity=0.190 Sum_probs=136.4
Q ss_pred cCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcE
Q 035922 321 GKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIG 400 (581)
Q Consensus 321 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 400 (581)
..+++|+.|++++|.++. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 445556666666665552 2 235556666666666666553 2 24556666666666666666555555566666666
Q ss_pred EECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCc
Q 035922 401 INFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK 480 (581)
Q Consensus 401 L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 480 (581)
|++++|++.+..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|+.|++++|+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 6666666664444455666666 677777777775555556777788888888888876666667778888888888888
Q ss_pred CcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922 481 FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536 (581)
Q Consensus 481 l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~ 536 (581)
+.+..|..+..+++|+.|++++|.+.+. ++.|+.+++++|.++|. +|.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~-ip~ 240 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV-VRN 240 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG-BBC
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc-ccC
Confidence 8877777777888888888888877654 34677788888888887 775
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=212.99 Aligned_cols=223 Identities=17% Similarity=0.169 Sum_probs=148.8
Q ss_pred CCcEEEccCCccccc----CchhhcCCCCCCEEEeecCcCcccccccc--cCCCCCCeEeccCCcccccCC----ccCCC
Q 035922 301 TLASLFLDNNKIFGS----IPPGIGKLVNLRRLYVWNNKLSGTIPSAI--GDLQNLRMLGMSGNRFSGNIP----LSVGN 370 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~----~~~~~ 370 (581)
.++.+.+.++.+... +.. +..+++|++|++++|++++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 466677766665422 111 1234568888888888887777776 778888888888888776444 23446
Q ss_pred CCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccccc--C--CcchhcccCCcceeEcCCCcccccCCc----ccc
Q 035922 371 LKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGT--I--PPQLFGLSSLSISLDLSRNHFTGSLPI----EVG 442 (581)
Q Consensus 371 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~--~--p~~~~~l~~L~~~L~Ls~n~l~~~~p~----~l~ 442 (581)
+++|++|++++|++.+..+..+..+++|++|++++|++.+. + +..+..+++| ++|++++|+++ .++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAI-QNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCC-CSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCC-CEEECCCCCCC-chHHHHHHHHh
Confidence 77888888888888777777777888888888888876532 2 2223456666 67777777775 2222 235
Q ss_pred CCCCCCeeeccCCcCccccCccccCC---CCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCC
Q 035922 443 NLKNLGVLDISGNLLSGEIPISLGSC---TSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLL 519 (581)
Q Consensus 443 ~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L 519 (581)
.+++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|+.||+++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 66777777777777776666666655 57777777777777 5565553 6777777777777653 33 5666777
Q ss_pred CEEECcCCCCCC
Q 035922 520 ENVNLSYNDLGA 531 (581)
Q Consensus 520 ~~L~ls~N~l~~ 531 (581)
++|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 777777777654
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.1e-24 Score=210.88 Aligned_cols=205 Identities=24% Similarity=0.236 Sum_probs=141.8
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+|+.|++++|.+.. ++ .+..+++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSDIKS-VQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCCccc-cc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 67777777777663 22 366677777777777777642 356677777777777777776666666777777777777
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|++++..+..+..+++|++|++++|++.+..+..+..+++| +.|++++|++++..+..+..+++|++|++++|++++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 777776666666777777777777777775445555667777 6777777777765555567777777777777777766
Q ss_pred cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK 517 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 517 (581)
.+..+..+++|+.|++++|++.+. ++.|+.|+++.|.++|.+|.++..++
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 197 PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence 666667777777777777776633 44567777777777777776665443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=3.6e-25 Score=225.65 Aligned_cols=251 Identities=18% Similarity=0.154 Sum_probs=193.9
Q ss_pred EeccCCcCcccCchhhhhcccCCcEEEccCCcccccCc----hhhcCCC-CCCEEEeecCcCcccccccccCC-----CC
Q 035922 280 LLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIP----PGIGKLV-NLRRLYVWNNKLSGTIPSAIGDL-----QN 349 (581)
Q Consensus 280 l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~ 349 (581)
..++.|.+++.+|+.+... ++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4567777777777765554 379999999999987766 6778888 89999999999987767666654 89
Q ss_pred CCeEeccCCcccccCCccC----CCC-CCCcEEeecCcccCCCCcccc----cC-CCCCcEEECCCCcccccC----Ccc
Q 035922 350 LRMLGMSGNRFSGNIPLSV----GNL-KMLIQLEVSENFLQGTIPSSL----CQ-CKSLIGINFSKNNLSGTI----PPQ 415 (581)
Q Consensus 350 L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~p~~l----~~-l~~L~~L~ls~n~l~~~~----p~~ 415 (581)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|++.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999987665543 344 899999999999987665443 33 469999999999998543 344
Q ss_pred hhccc-CCcceeEcCCCcccccCCcccc----CC-CCCCeeeccCCcCccc----cCccccC-CCCCcEEECCCCcCccc
Q 035922 416 LFGLS-SLSISLDLSRNHFTGSLPIEVG----NL-KNLGVLDISGNLLSGE----IPISLGS-CTSLEKLLMQGNKFYGP 484 (581)
Q Consensus 416 ~~~l~-~L~~~L~Ls~n~l~~~~p~~l~----~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~Ls~n~l~~~ 484 (581)
+...+ ++ +.|++++|++++..+..+. .+ ++|++|+|++|++++. ++..+.. .++|++|+|++|++.+.
T Consensus 162 l~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 LAAIPANV-NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHTSCTTC-CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HhcCCccc-cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 45555 77 8999999999877665444 44 5999999999999852 4555655 45999999999999876
Q ss_pred Cc----ccccCCCCCCEEECCCCccccc-------cchhhhcCCCCCEEECcCCCCCCC
Q 035922 485 IP----SSLRSLRGLSVWDFAQNNLSGE-------IPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 485 ~p----~~l~~l~~L~~L~ls~n~l~~~-------~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
.+ ..+..+++|+.|++++|.+.+. ++..+..+++|++||+++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 54 3456779999999999985443 334567788899999999998765
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=5.3e-25 Score=226.59 Aligned_cols=240 Identities=17% Similarity=0.182 Sum_probs=191.2
Q ss_pred CchhhhhcccCCcEEEccCCcccccCc----hhhcCCCCCCEEEeecC---cCcccccccc-------cCCCCCCeEecc
Q 035922 291 IPECISNFSTTLASLFLDNNKIFGSIP----PGIGKLVNLRRLYVWNN---KLSGTIPSAI-------GDLQNLRMLGMS 356 (581)
Q Consensus 291 ~p~~~~~~~~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~~L~Ls 356 (581)
++..+..+. +|++|++++|.+++..+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+++
T Consensus 24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 444555554 78999999998876533 34668899999999986 4455555544 688999999999
Q ss_pred CCcccc----cCCccCCCCCCCcEEeecCcccCCCCcccc----cCC---------CCCcEEECCCCccc-ccCC---cc
Q 035922 357 GNRFSG----NIPLSVGNLKMLIQLEVSENFLQGTIPSSL----CQC---------KSLIGINFSKNNLS-GTIP---PQ 415 (581)
Q Consensus 357 ~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~ls~n~l~-~~~p---~~ 415 (581)
+|.+++ .++..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|++. +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999886 356677888999999999998865433333 333 89999999999987 4455 46
Q ss_pred hhcccCCcceeEcCCCcccc-----cCCccccCCCCCCeeeccCCcCc----cccCccccCCCCCcEEECCCCcCccc--
Q 035922 416 LFGLSSLSISLDLSRNHFTG-----SLPIEVGNLKNLGVLDISGNLLS----GEIPISLGSCTSLEKLLMQGNKFYGP-- 484 (581)
Q Consensus 416 ~~~l~~L~~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~-- 484 (581)
+..+++| +.|++++|+++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|+.|+|++|.+.+.
T Consensus 183 l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 6678888 899999999883 34447888999999999999996 57888899999999999999999866
Q ss_pred --CcccccC--CCCCCEEECCCCcccc----ccchhh-hcCCCCCEEECcCCCCCCC
Q 035922 485 --IPSSLRS--LRGLSVWDFAQNNLSG----EIPKFL-AGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 485 --~p~~l~~--l~~L~~L~ls~n~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~ 532 (581)
++..+.. +++|+.|++++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 5666644 8999999999999998 488877 6789999999999999986
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=209.86 Aligned_cols=224 Identities=17% Similarity=0.169 Sum_probs=186.6
Q ss_pred CCCCEEEeecCcCcccccc---cccCCCCCCeEeccCCcccccCCccC--CCCCCCcEEeecCcccCCCCc----ccccC
Q 035922 324 VNLRRLYVWNNKLSGTIPS---AIGDLQNLRMLGMSGNRFSGNIPLSV--GNLKMLIQLEVSENFLQGTIP----SSLCQ 394 (581)
Q Consensus 324 ~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~ 394 (581)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4688999998887632111 12245779999999999999999888 889999999999999997655 34457
Q ss_pred CCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCccccc--C--CccccCCCCCCeeeccCCcCccccCc----ccc
Q 035922 395 CKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGS--L--PIEVGNLKNLGVLDISGNLLSGEIPI----SLG 466 (581)
Q Consensus 395 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~--~--p~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~ 466 (581)
+++|++|++++|++.+..+..+..+++| ++|++++|++.+. + +..+..+++|++|++++|+++ .++. .++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPAL-TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTC-CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCC-CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 9999999999999997778889999999 9999999998753 2 233478999999999999997 3333 357
Q ss_pred CCCCCcEEECCCCcCcccCcccccCC---CCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCc
Q 035922 467 SCTSLEKLLMQGNKFYGPIPSSLRSL---RGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNS 543 (581)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l 543 (581)
.+++|++|+|++|++.+.+|..+..+ ++|+.|++++|+++ .+|..+. ++|++|++++|++++ +|....+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~--~~~~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR--APQPDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS--CCCTTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC--CchhhhCCCc
Confidence 88999999999999998888877777 69999999999999 6777664 899999999999997 4556778999
Q ss_pred CcccccCCCCC
Q 035922 544 SATSVMGNSKL 554 (581)
Q Consensus 544 ~~l~~~gN~~l 554 (581)
+.+++++|+.-
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 99999999853
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.3e-24 Score=215.46 Aligned_cols=226 Identities=15% Similarity=0.157 Sum_probs=123.4
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccc-ccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEee
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGT-IPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEV 379 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 379 (581)
.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 566666666666655444 34556666666666666543 5555566666666666666665555555555666666666
Q ss_pred cCc-ccCCC-CcccccCCCCCcEEECCCC-ccccc-CCcchhccc-CCcceeEcCCC--ccc-ccCCccccCCCCCCeee
Q 035922 380 SEN-FLQGT-IPSSLCQCKSLIGINFSKN-NLSGT-IPPQLFGLS-SLSISLDLSRN--HFT-GSLPIEVGNLKNLGVLD 451 (581)
Q Consensus 380 ~~n-~l~~~-~p~~l~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~ 451 (581)
++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +| ++|++++| .++ +.++..+.++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 666 44432 4444555666666666666 55533 445555555 55 56666666 333 23444555566666666
Q ss_pred ccCCc-CccccCccccCCCCCcEEECCCCc-CcccCcccccCCCCCCEEECCCCccccccchhhhcC-CCCCEEECcCCC
Q 035922 452 ISGNL-LSGEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF-KLLENVNLSYND 528 (581)
Q Consensus 452 Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~ls~N~ 528 (581)
+++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| +... .+..+ ..++.|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 66665 454555555566666666666663 22111124555666666666665 3221 12222 124444456666
Q ss_pred CCCC
Q 035922 529 LGAR 532 (581)
Q Consensus 529 l~~~ 532 (581)
+++.
T Consensus 305 l~~~ 308 (336)
T 2ast_B 305 FTTI 308 (336)
T ss_dssp SCCT
T ss_pred Cccc
Confidence 6655
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=7.9e-25 Score=225.30 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=139.7
Q ss_pred cCCCCCCEEEeecCcCcc----cccccccCCCCCCeEeccCCcccccCCccC----CCC---------CCCcEEeecCcc
Q 035922 321 GKLVNLRRLYVWNNKLSG----TIPSAIGDLQNLRMLGMSGNRFSGNIPLSV----GNL---------KMLIQLEVSENF 383 (581)
Q Consensus 321 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~----~~l---------~~L~~L~L~~n~ 383 (581)
..+++|++|+|++|++++ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455666666666666654 345555566666666666666543322222 222 677777777777
Q ss_pred cC-CCCc---ccccCCCCCcEEECCCCcccc-----cCCcchhcccCCcceeEcCCCccc----ccCCccccCCCCCCee
Q 035922 384 LQ-GTIP---SSLCQCKSLIGINFSKNNLSG-----TIPPQLFGLSSLSISLDLSRNHFT----GSLPIEVGNLKNLGVL 450 (581)
Q Consensus 384 l~-~~~p---~~l~~l~~L~~L~ls~n~l~~-----~~p~~~~~l~~L~~~L~Ls~n~l~----~~~p~~l~~l~~L~~L 450 (581)
++ +.++ ..+..+++|++|++++|++.. ..+..+..+++| +.|++++|.++ +.+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 76 3333 355567788888888887762 233367777888 78888888885 5677778888899999
Q ss_pred eccCCcCccc----cCcccc--CCCCCcEEECCCCcCcc----cCcccc-cCCCCCCEEECCCCccccccc--hhh-hcC
Q 035922 451 DISGNLLSGE----IPISLG--SCTSLEKLLMQGNKFYG----PIPSSL-RSLRGLSVWDFAQNNLSGEIP--KFL-AGF 516 (581)
Q Consensus 451 ~Ls~n~l~~~----~p~~l~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~ls~n~l~~~~p--~~l-~~l 516 (581)
+|++|++++. ++..+. .+++|+.|+|++|.+.+ .+|..+ .++++|+.|++++|.+++..+ ..+ ..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l 329 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHh
Confidence 9999988765 556663 38899999999999987 477777 668999999999999987664 222 334
Q ss_pred CCCCEEECcCC
Q 035922 517 KLLENVNLSYN 527 (581)
Q Consensus 517 ~~L~~L~ls~N 527 (581)
+.++.+++..+
T Consensus 330 ~~~~~~~l~~~ 340 (386)
T 2ca6_A 330 STRGRGELDEL 340 (386)
T ss_dssp HHHTCCEECCC
T ss_pred hhcCcchhhhc
Confidence 55554555443
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.1e-23 Score=212.47 Aligned_cols=250 Identities=15% Similarity=0.146 Sum_probs=207.7
Q ss_pred CCcEEEccCCcccccCchhhcCC--CCCCEEEeecCcCcccccccccCCCCCCeEeccCCccccc-CCccCCCCCCCcEE
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKL--VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGN-IPLSVGNLKMLIQL 377 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 377 (581)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 5889999998876 4556666 8999999999999977665 56799999999999998865 77788899999999
Q ss_pred eecCcccCCCCcccccCCCCCcEEECCCC-cccc-cCCcchhcccCCcceeEcCCC-ccccc-CCccccCCC-CCCeeec
Q 035922 378 EVSENFLQGTIPSSLCQCKSLIGINFSKN-NLSG-TIPPQLFGLSSLSISLDLSRN-HFTGS-LPIEVGNLK-NLGVLDI 452 (581)
Q Consensus 378 ~L~~n~l~~~~p~~l~~l~~L~~L~ls~n-~l~~-~~p~~~~~l~~L~~~L~Ls~n-~l~~~-~p~~l~~l~-~L~~L~L 452 (581)
++++|.+++..+..+..+++|++|++++| .+++ .++..+..+++| ++|++++| .+++. ++..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL-DELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC-CEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC-CEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 99999999888888999999999999999 6775 367778889999 99999999 99864 677788999 9999999
Q ss_pred cCC--cCc-cccCccccCCCCCcEEECCCCc-CcccCcccccCCCCCCEEECCCCc-cccccchhhhcCCCCCEEECcCC
Q 035922 453 SGN--LLS-GEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSLRGLSVWDFAQNN-LSGEIPKFLAGFKLLENVNLSYN 527 (581)
Q Consensus 453 s~n--~l~-~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~p~~l~~l~~L~~L~ls~N 527 (581)
++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|+.|++++|. +.......+..+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 565 4677788899999999999999 777888899999999999999995 33333336889999999999999
Q ss_pred CCCCCCCCCcccc-CCcCcccccCCCCCccCCCC
Q 035922 528 DLGARYVPTEGVI-KNSSATSVMGNSKLCGGIPK 560 (581)
Q Consensus 528 ~l~~~~ip~~~~~-~~l~~l~~~gN~~lcg~~~~ 560 (581)
+... ....+ ..++.+++.+|. +.+..|.
T Consensus 283 -i~~~---~~~~l~~~l~~L~l~~n~-l~~~~~~ 311 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQINCSH-FTTIARP 311 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSEESCCC-SCCTTCS
T ss_pred -cCHH---HHHHHHhhCcceEEeccc-CccccCC
Confidence 4432 12233 347788888776 6765553
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.6e-24 Score=219.25 Aligned_cols=259 Identities=14% Similarity=0.140 Sum_probs=150.1
Q ss_pred EEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCc----ccCcCCC-CCCEEEccCCcCcccCCcccCCC-----CC
Q 035922 99 RLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIP----ATMSRCS-NIILMDLSVNQLLGNIPPEFGSL-----SK 168 (581)
Q Consensus 99 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 168 (581)
++++++|.+++.+|+.+...++|++|+|++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677788877777776666778888888887776555 5666777 77777777777776655555443 67
Q ss_pred CCEEECCCCcccccCCccC----cCC-CCCcEEEccCCCCCCcCCCccC----C-CCcccccccCCccCCCCCCccccCC
Q 035922 169 IKDLRSFMNNLTGSIPSSL----GNL-SSIIRLSLTYNNIARSIPDTLG----Y-LENLSFLSLGGNMLSGTIPSSIFNR 238 (581)
Q Consensus 169 L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~~p~~l~----~-l~~L~~L~l~~n~l~~~~p~~l~~l 238 (581)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~---------- 151 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG---------- 151 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG----------
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC----------
Confidence 7777777777665544432 223 5666666666666544332221 1 124444444444443
Q ss_pred CCccEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCch
Q 035922 239 SSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP 318 (581)
Q Consensus 239 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~ 318 (581)
+.....+ +..+....++|++|++++|.+++..+.
T Consensus 152 --------------~~~~~~l--------------------------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 185 (362)
T 3goz_A 152 --------------IKSSDEL--------------------------------IQILAAIPANVNSLNLRGNNLASKNCA 185 (362)
T ss_dssp --------------GSCHHHH--------------------------------HHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred --------------HHHHHHH--------------------------------HHHHhcCCccccEeeecCCCCchhhHH
Confidence 2211111 111222223566666666666655443
Q ss_pred h----hcCC-CCCCEEEeecCcCccc----ccccccC-CCCCCeEeccCCcccccCC----ccCCCCCCCcEEeecCccc
Q 035922 319 G----IGKL-VNLRRLYVWNNKLSGT----IPSAIGD-LQNLRMLGMSGNRFSGNIP----LSVGNLKMLIQLEVSENFL 384 (581)
Q Consensus 319 ~----l~~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l 384 (581)
. +..+ ++|++|++++|++++. ++..+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 186 ~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 186 ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence 3 3334 4777777777776642 3444444 3477777777777764332 2345567777777777774
Q ss_pred CCCC-------cccccCCCCCcEEECCCCcccccCC
Q 035922 385 QGTI-------PSSLCQCKSLIGINFSKNNLSGTIP 413 (581)
Q Consensus 385 ~~~~-------p~~l~~l~~L~~L~ls~n~l~~~~p 413 (581)
.+.. +..+..+++|++|++++|++.+..+
T Consensus 266 ~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 266 KNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp TTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4332 2345566667777777777665433
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.2e-23 Score=196.41 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=108.5
Q ss_pred CCCCEEEeecCcCcccccccccCCCCCCeEeccCCc-ccccCCccCCCCCCCcEEeecC-cccCCCCcccccCCCCCcEE
Q 035922 324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR-FSGNIPLSVGNLKMLIQLEVSE-NFLQGTIPSSLCQCKSLIGI 401 (581)
Q Consensus 324 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L 401 (581)
++|++|++++|++++..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 367777777777775555566677777777777775 6654455666667777777776 66665555556666666666
Q ss_pred ECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCC-cCccccCccccCCCCCc-EEECCCC
Q 035922 402 NFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGN-LLSGEIPISLGSCTSLE-KLLMQGN 479 (581)
Q Consensus 402 ~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~-~L~Ls~n 479 (581)
++++|++++ +|. +..++++ + .|++|++++| ++++..+..|..+++|+ .|++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L-~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYST-D---------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBC-C---------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred eCCCCCCcc-ccc-ccccccc-c---------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 666666652 443 4444444 3 0014455544 44433333444555555 5555555
Q ss_pred cCcccCcccccCCCCCCEEECCCCc-cccccchhhhcC-CCCCEEECcCCCCCCCCCCCccccCCcCcccccCCC
Q 035922 480 KFYGPIPSSLRSLRGLSVWDFAQNN-LSGEIPKFLAGF-KLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNS 552 (581)
Q Consensus 480 ~l~~~~p~~l~~l~~L~~L~ls~n~-l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~ 552 (581)
++....+..+.. ++|+.|++++|+ +++..+..|..+ ++|++|++++|++++ +|.. .+++++.+.+.+++
T Consensus 167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CCCT-TCTTCSEEECTTC-
T ss_pred CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc--CChh-HhccCceeeccCcc
Confidence 554222222222 455555555552 544444445555 555555555555543 3332 45555555555443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=1.1e-22 Score=194.65 Aligned_cols=203 Identities=19% Similarity=0.237 Sum_probs=139.0
Q ss_pred cCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCc-CcccccccccCCCCCCeEeccC-CcccccCCcc
Q 035922 290 LIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK-LSGTIPSAIGDLQNLRMLGMSG-NRFSGNIPLS 367 (581)
Q Consensus 290 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~ 367 (581)
.+|. +. +++++|++++|++++..+..+..+++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+..
T Consensus 25 ~ip~-~~---~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 25 RIPS-LP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp SCCC-CC---TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCC-CC---CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 4565 33 489999999999998777789999999999999997 8866667899999999999999 9999777788
Q ss_pred CCCCCCCcEEeecCcccCCCCcccccCCCCCc---EEECCCC-cccccCCcchhcccCCcc-eeEcCCCcccccCCcccc
Q 035922 368 VGNLKMLIQLEVSENFLQGTIPSSLCQCKSLI---GINFSKN-NLSGTIPPQLFGLSSLSI-SLDLSRNHFTGSLPIEVG 442 (581)
Q Consensus 368 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~~-~L~Ls~n~l~~~~p~~l~ 442 (581)
|.++++|++|++++|++++ +|. +..+++|+ +|++++| .+.+..+..+..++.+ + .|++++|+++ .+|...
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~-~i~~~~- 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFT-SVQGYA- 175 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCC-EECTTT-
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCc-ccCHhh-
Confidence 9999999999999999996 665 77788777 7777777 6653333334445555 4 5555555554 233222
Q ss_pred CCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCc-CcccCcccccCC-CCCCEEECCCCccccccchhhhcCCCCC
Q 035922 443 NLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSL-RGLSVWDFAQNNLSGEIPKFLAGFKLLE 520 (581)
Q Consensus 443 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 520 (581)
+ ..++|+.|++++|+ +.+..+..|..+ ++|+.|++++|++++ +|.. .+++|+
T Consensus 176 ----------------------~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~ 229 (239)
T 2xwt_C 176 ----------------------F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLK 229 (239)
T ss_dssp ----------------------T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCS
T ss_pred ----------------------c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCc
Confidence 2 22455555555553 444334445555 555555555555553 2222 345555
Q ss_pred EEECcCC
Q 035922 521 NVNLSYN 527 (581)
Q Consensus 521 ~L~ls~N 527 (581)
.|+++++
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 5555544
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=7.1e-22 Score=190.47 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeec
Q 035922 373 MLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDI 452 (581)
Q Consensus 373 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 452 (581)
+++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++| +.|++++|++++..+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEECCCCcccccChhHhcccCCCCEEEc
Confidence 44444444444444444444444555555555555544444444445555 55555555555444445556666666666
Q ss_pred cCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 453 SGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 453 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
++|++++..+..+..+++|++|++++|++.+..+..|..+++|+.|++++|++.+..+..+..+++|++|++++|++.+.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666644444556666677777777766655555666667777777777777666666666677777777777776654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=4.3e-22 Score=197.99 Aligned_cols=190 Identities=23% Similarity=0.314 Sum_probs=93.1
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+|++|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECC
Confidence 55555555555543 23 35555555555555555553222 5555555555555555543 2 234455555555555
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|++++. +. +..+++|++|++++|++. +..+ +..+++|++|++++|++++
T Consensus 116 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-------------------------~~~~--l~~l~~L~~L~l~~n~l~~- 165 (308)
T 1h6u_A 116 STQITDV-TP-LAGLSNLQVLYLDLNQIT-------------------------NISP--LAGLTNLQYLSIGNAQVSD- 165 (308)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECCSSCCC-------------------------CCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred CCCCCCc-hh-hcCCCCCCEEECCCCccC-------------------------cCcc--ccCCCCccEEEccCCcCCC-
Confidence 5555432 21 444555555555555544 2211 4444555555555555542
Q ss_pred cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
++. +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+.+..| +..+++|++|++++|++++
T Consensus 166 ~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 222 4455555555555555543222 4455555555555555543332 4555555555555555544
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.9e-21 Score=187.52 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=99.7
Q ss_pred CCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEc
Q 035922 349 NLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDL 428 (581)
Q Consensus 349 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~L 428 (581)
+++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++| ++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-DKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-CEEEc
Confidence 44445555555444444444455555555555555554444445555555555555555553334444555555 56666
Q ss_pred CCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccc
Q 035922 429 SRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGE 508 (581)
Q Consensus 429 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 508 (581)
++|++++..+..+..+++|++|++++|++++..+..|+.+++|+.|+|++|++.+..+..+..+++|+.|++++|.+...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666644444566777777777777777755555677778888888888888766666777888888888888887665
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.6e-21 Score=189.87 Aligned_cols=206 Identities=20% Similarity=0.288 Sum_probs=144.5
Q ss_pred EcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCC
Q 035922 245 SVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLV 324 (581)
Q Consensus 245 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~ 324 (581)
.+..+.+.+.+... .+++|+.|++.+|.+.. +| .+..+. +|++|++++|.+.+.. . +..++
T Consensus 25 ~l~~~~~~~~~~~~---~l~~L~~L~l~~~~i~~------------l~-~~~~l~-~L~~L~L~~n~i~~~~-~-~~~l~ 85 (308)
T 1h6u_A 25 AAGKSNVTDTVTQA---DLDGITTLSAFGTGVTT------------IE-GVQYLN-NLIGLELKDNQITDLA-P-LKNLT 85 (308)
T ss_dssp HTTCSSTTSEECHH---HHHTCCEEECTTSCCCC------------CT-TGGGCT-TCCEEECCSSCCCCCG-G-GTTCC
T ss_pred HhCCCCcCceecHH---HcCCcCEEEeeCCCccC------------ch-hhhccC-CCCEEEccCCcCCCCh-h-HccCC
Confidence 34455554433322 26778887777766542 22 355554 9999999999998654 4 89999
Q ss_pred CCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECC
Q 035922 325 NLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFS 404 (581)
Q Consensus 325 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 404 (581)
+|++|++++|++++. + .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 86 ~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEcc
Confidence 999999999999853 3 688999999999999999863 3 38899999999999999986543 7788888888888
Q ss_pred CCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc
Q 035922 405 KNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY 482 (581)
Q Consensus 405 ~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 482 (581)
+|++.+ ++. +..++++ +.|++++|++++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 160 ~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 160 NAQVSD-LTP-LANLSKL-TTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SSCCCC-CGG-GTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCcCCC-Chh-hcCCCCC-CEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 888773 333 5566666 666666666663222 555566666666666655332 2455555555555555554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=6.2e-21 Score=193.27 Aligned_cols=235 Identities=18% Similarity=0.154 Sum_probs=132.1
Q ss_pred cCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCccccc-ccccCCCCCCe-EeccCCcc
Q 035922 283 NDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIP-SAIGDLQNLRM-LGMSGNRF 360 (581)
Q Consensus 283 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~Ls~n~l 360 (581)
+++.++ .+|..+. +++++|+|++|+++...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.+.+|++
T Consensus 17 ~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 17 QESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp ESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred cCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 333443 3454442 366777777777764444456667777777777776654443 34566666554 44455666
Q ss_pred cccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCC-CcccccCCcchhcccCCcceeEcCCCcccccCCc
Q 035922 361 SGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSK-NNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI 439 (581)
Q Consensus 361 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~ 439 (581)
+...|..|..+++|++|++++|++++..+..+....++..+++.+ +++...-+..+..+...++.|++++|+|+ .+|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCCh
Confidence 655566666677777777777776655555555555666666644 34442222334444432256666666666 3444
Q ss_pred cccCCCCCCeeeccC-CcCccccC-ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922 440 EVGNLKNLGVLDISG-NLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK 517 (581)
Q Consensus 440 ~l~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 517 (581)
......+|++|++++ |.++ .+| ..|..+++|++|++++|+++. +|. ..+.+|+.|.+.++.-...+|. +.+++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~ 246 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPT-LEKLV 246 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCC-TTTCC
T ss_pred hhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCC-chhCc
Confidence 444455666666654 4444 343 345666666666666666663 332 1234455555555444445553 56666
Q ss_pred CCCEEECcCC
Q 035922 518 LLENVNLSYN 527 (581)
Q Consensus 518 ~L~~L~ls~N 527 (581)
+|+.++++++
T Consensus 247 ~L~~l~l~~~ 256 (350)
T 4ay9_X 247 ALMEASLTYP 256 (350)
T ss_dssp SCCEEECSCH
T ss_pred ChhhCcCCCC
Confidence 6666666553
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3.5e-20 Score=187.78 Aligned_cols=243 Identities=19% Similarity=0.213 Sum_probs=185.3
Q ss_pred cEEEcccccCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCch-hh
Q 035922 242 TTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPP-GI 320 (581)
Q Consensus 242 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l 320 (581)
++++.++++++ .+|..+ .+++++|++++|++++ .-+..+.++. +|++|+|++|.+.+.+|. .|
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~-----------i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRV-----------IQKGAFSGFG-DLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSE-----------ECTTSSTTCT-TCCEEEEECCTTCCEECTTSB
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCC-----------cCHHHHcCCC-CCCEEECcCCCCCCccChhHh
Confidence 67888888887 667655 4578887777766542 2223455554 999999999998776654 57
Q ss_pred cCCCCCCE-EEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecC-cccCCCCcccccCCC-C
Q 035922 321 GKLVNLRR-LYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE-NFLQGTIPSSLCQCK-S 397 (581)
Q Consensus 321 ~~l~~L~~-L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~ 397 (581)
.+++++++ +.++.|++++..|..|..+++|++|++++|.+.+..+..+....++..+++.+ +.+....+..+..+. .
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 88888775 66677899987788999999999999999999877666777778888999876 456655555666654 6
Q ss_pred CcEEECCCCcccccCCcchhcccCCcceeEcCC-CcccccCC-ccccCCCCCCeeeccCCcCccccCccccCCCCCcEEE
Q 035922 398 LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSR-NHFTGSLP-IEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLL 475 (581)
Q Consensus 398 L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 475 (581)
+++|++++|+++ .+|...+...++ +.+++++ |.++ .+| ..|..+++|++||+++|+++ .+|.. .+..|+.|.
T Consensus 156 l~~L~L~~N~i~-~i~~~~f~~~~L-~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~ 229 (350)
T 4ay9_X 156 SVILWLNKNGIQ-EIHNSAFNGTQL-DELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLR 229 (350)
T ss_dssp CEEEECCSSCCC-EECTTSSTTEEE-EEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEE
T ss_pred hhhhcccccccc-CCChhhccccch-hHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhh
Confidence 889999999998 677777777788 7899985 5666 555 56789999999999999999 55542 356677777
Q ss_pred CCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922 476 MQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG 507 (581)
Q Consensus 476 Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 507 (581)
+.++.-...+|. +..+++|+.++++++.-..
T Consensus 230 ~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~c~ 260 (350)
T 4ay9_X 230 ARSTYNLKKLPT-LEKLVALMEASLTYPSHCC 260 (350)
T ss_dssp CTTCTTCCCCCC-TTTCCSCCEEECSCHHHHH
T ss_pred hccCCCcCcCCC-chhCcChhhCcCCCCcccc
Confidence 666655557774 7899999999998875443
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3e-20 Score=198.24 Aligned_cols=189 Identities=26% Similarity=0.310 Sum_probs=144.0
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
+++.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 66544 377888888888888 566 456888888888888886 666 554 88888888
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|.+++ +|. .+++|++|++++|++++ +|. .+++| +.|++++|++++ +|. +. ++|+.|+|++|+|+ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 888886 555 57888888888888874 665 45666 788888888885 666 55 78888888888888 6
Q ss_pred cCccccCCCCC-------cEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCC
Q 035922 461 IPISLGSCTSL-------EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKL 518 (581)
Q Consensus 461 ~p~~l~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 518 (581)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|++++|.+++.+|..+..++.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 666 544 66 88888888887 57777777888888888888888888887776543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.8e-20 Score=173.79 Aligned_cols=157 Identities=20% Similarity=0.227 Sum_probs=98.9
Q ss_pred CCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEE
Q 035922 94 LSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLR 173 (581)
Q Consensus 94 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 173 (581)
.++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 34667777777777765555666777777777777777755555566777777777777777655555566677777777
Q ss_pred CCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcc
Q 035922 174 SFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQG 253 (581)
Q Consensus 174 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 253 (581)
+++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. +++++.++++.|.+.|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCc
Confidence 777777655555566667777777777766655555566666666666666655432 2334444444444444
Q ss_pred cCCh
Q 035922 254 NIPL 257 (581)
Q Consensus 254 ~~~~ 257 (581)
.+|.
T Consensus 180 ~ip~ 183 (208)
T 2o6s_A 180 VVRN 183 (208)
T ss_dssp TBBC
T ss_pred eeec
Confidence 4443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.4e-20 Score=174.30 Aligned_cols=180 Identities=19% Similarity=0.154 Sum_probs=86.3
Q ss_pred cEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922 303 ASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382 (581)
Q Consensus 303 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 382 (581)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34455555444 223222 235555555555555444444455555555555555555433333445555555555555
Q ss_pred ccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccC
Q 035922 383 FLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIP 462 (581)
Q Consensus 383 ~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 462 (581)
.+++..+..+..+++|++|++++|++. +..+..+..+++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQ-------------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCc-------------------------ccCHhHhccCCcCCEEECCCCccceeCH
Confidence 555433333444444444444444444 3333334444455555555555543333
Q ss_pred ccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCC
Q 035922 463 ISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFK 517 (581)
Q Consensus 463 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 517 (581)
..+..+++|+.|++++|++.+ .++.|+.|+++.|.++|.+|.+++.++
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 334455555555555554432 233455555555555555555554443
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=5.2e-20 Score=196.39 Aligned_cols=183 Identities=23% Similarity=0.317 Sum_probs=157.7
Q ss_pred CCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEEC
Q 035922 324 VNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINF 403 (581)
Q Consensus 324 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 403 (581)
.+|+.|++++|++++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 389999999999996 77655 389999999999998 677 457999999999999997 776 655 9999999
Q ss_pred CCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcc
Q 035922 404 SKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYG 483 (581)
Q Consensus 404 s~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 483 (581)
++|++++ +|. .+++| +.|++++|.+++ +|. .+++|++|++++|++++ +|. +. ++|+.|+|++|+++
T Consensus 128 s~N~l~~-lp~---~l~~L-~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALL-EYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCcCCC-CCC---cCccc-cEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 9999995 777 57788 899999999995 665 57899999999999996 777 65 99999999999998
Q ss_pred cCcccccCCCCC-------CEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCC
Q 035922 484 PIPSSLRSLRGL-------SVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT 536 (581)
Q Consensus 484 ~~p~~l~~l~~L-------~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~ 536 (581)
.+|. +.. +| +.|++++|.++ .+|..+..+++|++|++++|++++. +|.
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~-~p~ 248 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR-IRE 248 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH-HHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc-CHH
Confidence 6776 654 77 99999999998 5788888899999999999999987 663
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.4e-19 Score=171.73 Aligned_cols=163 Identities=23% Similarity=0.262 Sum_probs=119.2
Q ss_pred CCCCCCCCCccccCC---CCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCC
Q 035922 66 GSWNESSHFCKWHES---LKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRC 142 (581)
Q Consensus 66 ~~w~~~~~~c~w~~~---~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 142 (581)
..|..+...|.|.+. ..-.+.+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|.++...+..|..+
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp -CCCCTTCEEETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hccCCCCCEEeCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 355567789999761 112234555443 677888888888887777778888888888888888875555667788
Q ss_pred CCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCccccccc
Q 035922 143 SNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSL 222 (581)
Q Consensus 143 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 222 (581)
++|++|+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 88888888888887666666777888888888888877 67777777888888888888877666666777777777777
Q ss_pred CCccCCCCC
Q 035922 223 GGNMLSGTI 231 (581)
Q Consensus 223 ~~n~l~~~~ 231 (581)
++|.+.+..
T Consensus 167 ~~N~~~c~c 175 (229)
T 3e6j_A 167 FGNPWDCEC 175 (229)
T ss_dssp TTSCBCTTB
T ss_pred eCCCccCCc
Confidence 777776443
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=6.2e-20 Score=172.89 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=128.6
Q ss_pred cEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCC-cchhcccCCcceeEcCCCcccccCCccccCCCCCCeeecc
Q 035922 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIP-PQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDIS 453 (581)
Q Consensus 375 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 453 (581)
+.+++++|.++ .+|..+ ...+++|++++|++++..+ ..+..++.+ +.|++++|++++..+..|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35666666665 345433 2345677777777775544 345677777 788888888886666678888888888888
Q ss_pred CCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCC
Q 035922 454 GNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARY 533 (581)
Q Consensus 454 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 533 (581)
+|++++..+..|..+++|++|+|++|++.+..|..|..+++|+.|++++|.+++..|..|..+++|++|++++|++.+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~- 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN- 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS-
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC-
Confidence 8888877777788888888888888888888788888888888888888888888788888888899999999888876
Q ss_pred CCCccccCCcCcc-cccCCCCCccCCC
Q 035922 534 VPTEGVIKNSSAT-SVMGNSKLCGGIP 559 (581)
Q Consensus 534 ip~~~~~~~l~~l-~~~gN~~lcg~~~ 559 (581)
.+......-+... ...+|+ .|+.++
T Consensus 169 c~l~~l~~~~~~~~~~~~~~-~C~~P~ 194 (220)
T 2v70_A 169 CYLAWLGEWLRKKRIVTGNP-RCQKPY 194 (220)
T ss_dssp GGGHHHHHHHHHSCCBCCCC-EEEESG
T ss_pred CchHHHHHHHHhcCccccCC-ccCCCh
Confidence 5532211111111 234555 786554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.5e-19 Score=167.00 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=124.1
Q ss_pred cEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccC
Q 035922 375 IQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISG 454 (581)
Q Consensus 375 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 454 (581)
+.++++++.++ .+|..+. +++++|++++|++.+..+..+..++.+ +.|++++|++++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L-~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKL-RRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTC-CEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCC-CEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57788888877 4565443 678888888888886666677788888 7888888888877788888888888888888
Q ss_pred CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 455 NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 455 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
|+++...+..|..+++|+.|+|++|++.+..|..|..+++|+.|++++|.+++..+..+..+++|++|++++|++...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 888855555677888888888888888887788888888888888888888877777788888888888888888654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.1e-19 Score=174.87 Aligned_cols=189 Identities=25% Similarity=0.341 Sum_probs=113.5
Q ss_pred CcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecC
Q 035922 302 LASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSE 381 (581)
Q Consensus 302 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 381 (581)
+..+.+..+.+.+..+ +..+++|++|++++|.++.. + .+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 3344455555554322 34567788888888877643 3 36677778888888877775433 67777777777777
Q ss_pred cccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCcccc
Q 035922 382 NFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEI 461 (581)
Q Consensus 382 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 461 (581)
|.+++ ++ .+..+++|++|++++|++.+ + ..+..++.| +.|++++|++++. ..+..+++|++|++++|++++..
T Consensus 100 n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 100 NKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCC-CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 77764 22 36667777777777777663 2 345555566 5666666666532 34555566666666666655333
Q ss_pred CccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922 462 PISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG 507 (581)
Q Consensus 462 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 507 (581)
+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 5555566666666665553 23 25555555555555555543
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=2.7e-19 Score=168.45 Aligned_cols=153 Identities=22% Similarity=0.279 Sum_probs=120.7
Q ss_pred CeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCC
Q 035922 351 RMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSR 430 (581)
Q Consensus 351 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~ 430 (581)
+.++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|++|++++|++.+..|..+..+++| ++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-NSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-CEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-CEEECCC
Confidence 56788888777 5565443 678888888888887666678888888888888888887777888888888 7888888
Q ss_pred CcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccc
Q 035922 431 NHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSG 507 (581)
Q Consensus 431 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 507 (581)
|+++...+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++.+..+..|..+++|+.|++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88885555556778888888888888887777788888888888888888887777778888888888888888754
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.5e-19 Score=181.14 Aligned_cols=178 Identities=21% Similarity=0.187 Sum_probs=145.0
Q ss_pred CeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccccc-CCCCCcEEECCCCcccccCCcchhcccCCcceeEcC
Q 035922 351 RMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLC-QCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLS 429 (581)
Q Consensus 351 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls 429 (581)
+.++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|++.+..+..+..+++| ++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECC
Confidence 57899999887 5666543 4688999999999877777777 88999999999999986666778888888 889999
Q ss_pred CCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccc---cCCCCCCEEECCCCccc
Q 035922 430 RNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL---RSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 430 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~ 506 (581)
+|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++.+..+..| ..+++|+.|||++|++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999987667778888999999999999987778888889999999999999986544445 56888999999999998
Q ss_pred cccchhhhcCCC--CCEEECcCCCCCCC
Q 035922 507 GEIPKFLAGFKL--LENVNLSYNDLGAR 532 (581)
Q Consensus 507 ~~~p~~l~~l~~--L~~L~ls~N~l~~~ 532 (581)
+..+..+..++. ++.|++++|++...
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCC
Confidence 766677888877 48889999888753
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=4.5e-19 Score=174.55 Aligned_cols=167 Identities=25% Similarity=0.382 Sum_probs=75.4
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 444555555444422 2 24444455555555554443222 4444455555555554442 11 24444455555555
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|++++. ..+..+++|++|++++|++.+. ..+..+++| +.|++++|++++..+ +..+++|++|++++|++++
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L-~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCC-CEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 5544432 2344444455555555544422 334444444 445555554443222 4444455555555554442
Q ss_pred cCccccCCCCCcEEECCCCcCc
Q 035922 461 IPISLGSCTSLEKLLMQGNKFY 482 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~ 482 (581)
++ .+..+++|+.|++++|++.
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEE
T ss_pred Ch-hhccCCCCCEEECcCCccc
Confidence 22 2444445555555555444
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=162.92 Aligned_cols=157 Identities=21% Similarity=0.228 Sum_probs=114.1
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCc-ccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIP-ATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM 176 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 176 (581)
+++++++|.++ .+|..+. +.+++|+|++|.+++..| ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 3555443 345777777777775544 3467777777788777777776666777777788888887
Q ss_pred CcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCC
Q 035922 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256 (581)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 256 (581)
|++++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 77776666667777778888888887777777777777778888888887776667777777777777777777776554
Q ss_pred h
Q 035922 257 L 257 (581)
Q Consensus 257 ~ 257 (581)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 3
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=9.4e-19 Score=177.95 Aligned_cols=178 Identities=20% Similarity=0.114 Sum_probs=154.0
Q ss_pred CCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCC-CCCCCcEEeecCcccCCCCcccccCCCCCcEEECC
Q 035922 326 LRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVG-NLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFS 404 (581)
Q Consensus 326 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls 404 (581)
-+.+++++++++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999998 5676553 5689999999999988777787 89999999999999998888889999999999999
Q ss_pred CCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccc---cCCCCCcEEECCCCcC
Q 035922 405 KNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISL---GSCTSLEKLLMQGNKF 481 (581)
Q Consensus 405 ~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l 481 (581)
+|++.+..+..+..+++| +.|++++|++++..|..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999996666778899999 899999999998888899999999999999999995444444 5799999999999999
Q ss_pred cccCcccccCCCC--CCEEECCCCcccc
Q 035922 482 YGPIPSSLRSLRG--LSVWDFAQNNLSG 507 (581)
Q Consensus 482 ~~~~p~~l~~l~~--L~~L~ls~n~l~~ 507 (581)
.+..+..+..++. ++.|++++|.+..
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccC
Confidence 9776678888887 4899999999864
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.1e-18 Score=188.28 Aligned_cols=191 Identities=25% Similarity=0.334 Sum_probs=135.9
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.+..+.+..+.+....+ +..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 34555666666664433 4667888888888888874 33 47788888888888888875443 7778888888888
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|.+.+ +| .+..+++|++|++++|++.+ + +.+..++.| +.|+|++|++++. ..+..+++|+.|+|++|++++.
T Consensus 96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 888875 33 57778888888888888773 3 346677777 7777777777743 4567777777777777777755
Q ss_pred cCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccc
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGE 508 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 508 (581)
.| +..+++|+.|+|++|++.+. | .+..+++|+.|+|++|.+.+.
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred hh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 44 67777777777777777653 3 467777777777777777654
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=1.9e-18 Score=186.35 Aligned_cols=169 Identities=24% Similarity=0.384 Sum_probs=138.4
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.|+.|++++|.+.. ++ .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+++
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 88889999988874 34 47888999999999998886544 7888999999999998874 33 67888999999999
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|.+.+. ..+..+++|+.|+|++|.+.+. ..+..++.| +.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L-~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~- 189 (605)
T 1m9s_A 118 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKL-DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 189 (605)
T ss_dssp TSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTC-SEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCC-CEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-
Confidence 9988853 3578888999999999988843 577788888 889999999886555 8888999999999999885
Q ss_pred cCccccCCCCCcEEECCCCcCccc
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGP 484 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~ 484 (581)
++ .+..+++|+.|+|++|++.+.
T Consensus 190 l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEEEECC
T ss_pred Ch-HHccCCCCCEEEccCCcCcCC
Confidence 33 588889999999999988754
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=1.2e-18 Score=160.32 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=91.3
Q ss_pred cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCc-cccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922 399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPI-EVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ 477 (581)
Q Consensus 399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 477 (581)
+++++++|++. .+|..+.. .+ +.|++++|++++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45555555554 45544332 34 5666666666544332 25666666666666666666656666666666666666
Q ss_pred CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccCCcCcccccCCCCCccC
Q 035922 478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~~l~~l~~~gN~~lcg~ 557 (581)
+|++.+..+..|..+++|+.|++++|++++.+|..+..+++|++|++++|++.+. .+.......++...+.++...|+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~-c~l~~~~~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGA 165 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc-CcchHHHHHHHHcCCCCCCCCCCC
Confidence 6666666666666666666666666666666666666666666666666666655 443222222333344455555654
Q ss_pred CC
Q 035922 558 IP 559 (581)
Q Consensus 558 ~~ 559 (581)
++
T Consensus 166 P~ 167 (192)
T 1w8a_A 166 PS 167 (192)
T ss_dssp ST
T ss_pred Ch
Confidence 43
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1e-17 Score=158.81 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=137.8
Q ss_pred CcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922 97 LRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM 176 (581)
Q Consensus 97 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 176 (581)
-+.++.+++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 367999999887 5666554 8999999999999988899999999999999999999877667789999999999999
Q ss_pred CcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCC
Q 035922 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIP 256 (581)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 256 (581)
|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9999777777899999999999999997 678889999999999999999996656678888999999999998886654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.4e-18 Score=159.19 Aligned_cols=134 Identities=16% Similarity=0.186 Sum_probs=77.4
Q ss_pred ccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCC
Q 035922 392 LCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSL 471 (581)
Q Consensus 392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 471 (581)
+..+++|++|++++|.+. .+..+..++.+ ++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNL-ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTC-CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCC-CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 333444444444444332 11234444555 555555555555455556666666666666666666566666677777
Q ss_pred cEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922 472 EKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 472 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
++|++++|++.+.+| .+..+++|+.|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus 139 ~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 777777776223444 46677777777777777764 33 56777777777777777654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.5e-18 Score=159.03 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=130.5
Q ss_pred cCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922 92 GNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD 171 (581)
Q Consensus 92 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (581)
+++++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56788999999999998 556 6899999999999999775 3347899999999999999999888889999999999
Q ss_pred EECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccC
Q 035922 172 LRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRM 251 (581)
Q Consensus 172 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 251 (581)
|++++|++++..|..++.+++|++|++++|...+.+| .+..+++|++|++++|++++ ++ .+..+++|++|++++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 9999999998888889999999999999998334455 68899999999999999984 44 667778888888887776
Q ss_pred c
Q 035922 252 Q 252 (581)
Q Consensus 252 ~ 252 (581)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 5
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=7.1e-21 Score=204.11 Aligned_cols=187 Identities=19% Similarity=0.153 Sum_probs=89.0
Q ss_pred CCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCc-------------ccccCCccCCCCCCCcEEe-ecCcccCCC
Q 035922 322 KLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNR-------------FSGNIPLSVGNLKMLIQLE-VSENFLQGT 387 (581)
Q Consensus 322 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~~ 387 (581)
.++.|+.|+|++|+++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3455555555555554 455555555555555554443 2233344444444555444 3333221
Q ss_pred CcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccC
Q 035922 388 IPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGS 467 (581)
Q Consensus 388 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 467 (581)
.|..+.+++|.+.. ++. ..+ +.|++++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.
T Consensus 424 ---------~L~~l~l~~n~i~~-l~~-----~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLK-MEY-----ADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ---------HHHHHHHHHHHHHH-HHH-----TTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ---------hhhhhhhhcccccc-cCc-----cCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 11222222222221 110 112 445555555553 343 555555555555555555 44555555
Q ss_pred CCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccccc-chhhhcCCCCCEEECcCCCCCCC
Q 035922 468 CTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEI-PKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 468 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
+++|+.|+|++|++++ +| .++.+++|+.|++++|.+++.+ |..+..+++|++|++++|++++.
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 5555555555555553 34 4555555555555555555444 55555555555555555555543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=5.6e-21 Score=204.90 Aligned_cols=201 Identities=19% Similarity=0.163 Sum_probs=170.3
Q ss_pred cCCcEEEccCCcccccCchhhcCCCCCCEEEeecCc-------------CcccccccccCCCCCCeEe-ccCCcccccCC
Q 035922 300 TTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNK-------------LSGTIPSAIGDLQNLRMLG-MSGNRFSGNIP 365 (581)
Q Consensus 300 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~~~~ 365 (581)
+.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~----- 422 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL----- 422 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-----
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-----
Confidence 48999999999997 789999999999999997764 5567788888899999998 677654
Q ss_pred ccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCC
Q 035922 366 LSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK 445 (581)
Q Consensus 366 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~ 445 (581)
..|+.+.+++|.++...+ ..|++|++++|.++ .+|. +..++.| +.|++++|+++ .+|..++.++
T Consensus 423 ------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~-~lp~-~~~l~~L-~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 ------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLT-VLCH-LEQLLLV-THLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCS-SCCC-GGGGTTC-CEEECCSSCCC-CCCGGGGGCT
T ss_pred ------chhhhhhhhcccccccCc------cCceEEEecCCCCC-CCcC-ccccccC-cEeecCccccc-ccchhhhcCC
Confidence 356667778887774322 24899999999998 4776 8999999 89999999999 8899999999
Q ss_pred CCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccC-cccccCCCCCCEEECCCCccccccch---hhhcCCCCCE
Q 035922 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEIPK---FLAGFKLLEN 521 (581)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p~---~l~~l~~L~~ 521 (581)
+|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|++++|.+++.+|. .+..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999995 67 8999999999999999999877 99999999999999999999977653 3455899999
Q ss_pred EEC
Q 035922 522 VNL 524 (581)
Q Consensus 522 L~l 524 (581)
||+
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 875
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=4.5e-19 Score=196.03 Aligned_cols=262 Identities=18% Similarity=0.113 Sum_probs=125.2
Q ss_pred CCHhHHHHHHHHHhcCCCCCCCCCCCCCCC-CCCccccCCCCcccccCccccCCCCCcEEECCCCCCCCCCchhccCCCC
Q 035922 42 GNETDREALLEFKSKITVDPFGVLGSWNES-SHFCKWHESLKLAGSISPYIGNLSFLRRLHLDNNNFTHAIPPEIGRLRR 120 (581)
Q Consensus 42 ~~~~~~~~ll~~k~~~~~~~~~~l~~w~~~-~~~c~w~~~~~~~g~i~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 120 (581)
..+.++++++++..+.....+..-..|... ...+.|.+.. ..-++++.|+|.++.+.. .+..+.....
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~s~~~~~~l~L~~n~~~~-~~~~~l~~l~ 197 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSA----------VSTPLTPKIELFANGKDE-ANQALLQHKK 197 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCce----------ecCCccceEEeeCCCCCc-chhhHhhcCc
Confidence 345678899999877654444444556433 3445665421 112456788888888774 3433322222
Q ss_pred CCE-----EEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcCCCCCcE
Q 035922 121 LRG-----LTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGNLSSIIR 195 (581)
Q Consensus 121 L~~-----L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 195 (581)
|+. ++++.|.+. ..|..+..+++|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++++++|++
T Consensus 198 Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 198 LSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred cCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence 222 223334444 55778888899999999999887 67777778899999999999988 88888889999999
Q ss_pred EEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCceeeccccC
Q 035922 196 LSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHFGIVFNN 275 (581)
Q Consensus 196 L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 275 (581)
|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+..+++|+.|++++|.+.+.+|..+...-...
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~--------- 343 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTG--------- 343 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHH---------
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhh---------
Confidence 999999987 67888888999999999999887 7888888888999999998888887776654310000
Q ss_pred cceeEeccCCcCcccCchhhhhcccCCcEEEccCC--------cccccCchhhcCCCCCCEEEeecCcCc
Q 035922 276 FTELLLLNDNNFGGLIPECISNFSTTLASLFLDNN--------KIFGSIPPGIGKLVNLRRLYVWNNKLS 337 (581)
Q Consensus 276 ~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~L~~n~l~ 337 (581)
..+++.+|.+++.+|. .|+.|+++.| .+.+..+..+..+..++...+++|.+.
T Consensus 344 --~~l~l~~N~l~~~~p~-------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 344 --LIFYLRDNRPEIPLPH-------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --HHHHHHHCCCCCCCCC-------C-----------------------------------------CCC
T ss_pred --hHHhhccCcccCcCcc-------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 1134555666666664 4555666655 222222223334444455555555443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5.9e-18 Score=163.88 Aligned_cols=170 Identities=21% Similarity=0.256 Sum_probs=109.5
Q ss_pred CCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEE
Q 035922 323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGIN 402 (581)
Q Consensus 323 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 402 (581)
+.+++.++++++.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 44566677777777743 3 4667778888888888776 344 56677777777877777775433 67777777777
Q ss_pred CCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCc
Q 035922 403 FSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFY 482 (581)
Q Consensus 403 ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 482 (581)
+++|++.+ +|.... +++ +.|++++|++++ ++ .+..+++|++|++++|++++. + .+..+++|+.|++++|++.
T Consensus 92 L~~N~l~~-l~~~~~--~~L-~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS--ACL-SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSC-CTTCCC--SSC-CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCC-cCcccc--Ccc-cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 77777763 443222 555 667777776664 22 466666666666666666632 3 4566666666666666666
Q ss_pred ccCcccccCCCCCCEEECCCCccccc
Q 035922 483 GPIPSSLRSLRGLSVWDFAQNNLSGE 508 (581)
Q Consensus 483 ~~~p~~l~~l~~L~~L~ls~n~l~~~ 508 (581)
+. ..+..+++|+.|++++|.+.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 44 4456666666666666666543
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.4e-18 Score=192.01 Aligned_cols=218 Identities=21% Similarity=0.201 Sum_probs=105.8
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCC-----EEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCc
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLR-----RLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLI 375 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~-----~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 375 (581)
.++.|++.+|.+... +..+.....|. .+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|+
T Consensus 174 ~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred ccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 466666666666542 22221111121 2222333333 44666777778888888888777 5666666778888
Q ss_pred EEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCC
Q 035922 376 QLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGN 455 (581)
Q Consensus 376 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 455 (581)
+|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++| ++|+|++|.++ .+|..|+.+++|++|+|++|
T Consensus 251 ~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred EEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 8888888877 67777777888888888888877 777777777777 77888888776 67777788888888888888
Q ss_pred cCccccCccccCCCC-CcEEECCCCcCcccCcccccCCCCCCEEECCCC--------ccccccchhhhcCCCCCEEECcC
Q 035922 456 LLSGEIPISLGSCTS-LEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN--------NLSGEIPKFLAGFKLLENVNLSY 526 (581)
Q Consensus 456 ~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n--------~l~~~~p~~l~~l~~L~~L~ls~ 526 (581)
.+++.+|..+..+.. +..+++++|.+.+.+|.. |+.|++++| .+.+..+..+..+..++...+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 888777776654422 223677788887776653 445556666 34444444455666667777777
Q ss_pred CCCCC
Q 035922 527 NDLGA 531 (581)
Q Consensus 527 N~l~~ 531 (581)
|-+.+
T Consensus 401 Nil~~ 405 (727)
T 4b8c_D 401 NTLCQ 405 (727)
T ss_dssp -CCCG
T ss_pred ccccc
Confidence 77753
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=8.1e-18 Score=162.93 Aligned_cols=168 Identities=21% Similarity=0.281 Sum_probs=129.1
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.++.++++++.+++.. .+..+++|++|++++|+++ .++ .+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 5677778888877443 4677888888888888887 344 57788888888888888875443 7888888888888
Q ss_pred CcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccc
Q 035922 381 ENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGE 460 (581)
Q Consensus 381 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 460 (581)
+|++++. |. +.. ++|++|++++|++++ ++ .+..+++| +.|++++|++++ ++ .+..+++|++|++++|++++.
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L-~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNL-EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTC-CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccc-cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch
Confidence 8888853 33 233 788888888888874 33 57778888 788888888885 34 677888888888888888855
Q ss_pred cCccccCCCCCcEEECCCCcCccc
Q 035922 461 IPISLGSCTSLEKLLMQGNKFYGP 484 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n~l~~~ 484 (581)
..+..+++|+.|++++|++.+.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5678888888888888888754
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.1e-16 Score=147.26 Aligned_cols=132 Identities=23% Similarity=0.320 Sum_probs=98.7
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcc-cCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPA-TMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFM 176 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 176 (581)
+++++++++++ .+|..+.. +|++|++++|.+++..+. .++.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56778888775 56655543 788888888888755553 377788888888888888877777788888888888888
Q ss_pred CcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCC
Q 035922 177 NNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIP 232 (581)
Q Consensus 177 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 232 (581)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88887777777777888888888888877777777777777777777777765443
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=2.3e-17 Score=165.51 Aligned_cols=293 Identities=10% Similarity=0.041 Sum_probs=152.1
Q ss_pred cccCcccc--CCCCCcEEECCCCCCCCCCchhccC-CCCCCEEEccCCCCC--CCCcccCcCCCCCCEEEccCCcCcccC
Q 035922 85 GSISPYIG--NLSFLRRLHLDNNNFTHAIPPEIGR-LRRLRGLTLNNNSIG--GEIPATMSRCSNIILMDLSVNQLLGNI 159 (581)
Q Consensus 85 g~i~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 159 (581)
|.++..+. .+.+++.|.++++ +.......+.. +++|++|||++|++. ...+. .++.++.+.+..|.+ .
T Consensus 13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~ 85 (329)
T 3sb4_A 13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---P 85 (329)
T ss_dssp TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---C
T ss_pred CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---C
Confidence 44444443 3667888888764 22111123333 788999999999887 22222 222345555555532 2
Q ss_pred CcccCC--------CCCCCEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccC----
Q 035922 160 PPEFGS--------LSKIKDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNML---- 227 (581)
Q Consensus 160 p~~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l---- 227 (581)
+..|.+ +++|+.|++.+ .++..-+..|.++++|+.+++.+|.+....+..|..+.++..+....+..
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~ 164 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK 164 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence 345566 88888888888 77755566788888888888888888777777787777777776655321
Q ss_pred CCCCCccccCCCCcc-EEEcccccCcccCChhhhcC---CCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCc
Q 035922 228 SGTIPSSIFNRSSIT-TFSVVLNRMQGNIPLDFGFT---LPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLA 303 (581)
Q Consensus 228 ~~~~p~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~---l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~ 303 (581)
...-...+.++..|+ .+.+... +.++..+... ..+++.+.+.++ +.......+....++|+
T Consensus 165 ~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~------------l~~~~~~~l~~~~~~L~ 229 (329)
T 3sb4_A 165 NRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGK------------LDNADFKLIRDYMPNLV 229 (329)
T ss_dssp TTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEEC------------CCHHHHHHHHHHCTTCC
T ss_pred ccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeee------------ecHHHHHHHHHhcCCCe
Confidence 111223344444554 3333221 1112211110 122222222111 00000011111123555
Q ss_pred EEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCC-eEeccCCcccccCCccCCCCCCCcEEeecCc
Q 035922 304 SLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLR-MLGMSGNRFSGNIPLSVGNLKMLIQLEVSEN 382 (581)
Q Consensus 304 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 382 (581)
.+++++|.++...+..|.++++|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..|.+|++|+.+++++|
T Consensus 230 ~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 230 SLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp EEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred EEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 5555555555444444555555555555554 4434444555555555 555555 444344455555555555555555
Q ss_pred ccCCCCcccccCCCCCcEEE
Q 035922 383 FLQGTIPSSLCQCKSLIGIN 402 (581)
Q Consensus 383 ~l~~~~p~~l~~l~~L~~L~ 402 (581)
.++...+..|.++++|+.++
T Consensus 308 ~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 308 KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCCEECTTTTCTTCCCCEEE
T ss_pred ccCccchhhhcCCcchhhhc
Confidence 55544444555555555544
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=5.4e-17 Score=145.88 Aligned_cols=138 Identities=19% Similarity=0.188 Sum_probs=114.8
Q ss_pred CCCCCcEEECCCCCCC-CCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCE
Q 035922 93 NLSFLRRLHLDNNNFT-HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKD 171 (581)
Q Consensus 93 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 171 (581)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467899999999997 67888888999999999999999865 78889999999999999998778877888999999
Q ss_pred EECCCCcccccC-CccCcCCCCCcEEEccCCCCCCcCC---CccCCCCcccccccCCccCCCCCCc
Q 035922 172 LRSFMNNLTGSI-PSSLGNLSSIIRLSLTYNNIARSIP---DTLGYLENLSFLSLGGNMLSGTIPS 233 (581)
Q Consensus 172 L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~~~p~ 233 (581)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 999999988532 2678889999999999998876544 47788889999999888876 4444
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=2e-16 Score=142.19 Aligned_cols=134 Identities=16% Similarity=0.128 Sum_probs=111.0
Q ss_pred CCCCcEEECCCCccc-ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcE
Q 035922 395 CKSLIGINFSKNNLS-GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEK 473 (581)
Q Consensus 395 l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 473 (581)
.++|++|++++|.+. +.+|..+..++.+ +.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 467888888888876 6777777788888 7888888888854 67888899999999999998778887878999999
Q ss_pred EECCCCcCcccC-cccccCCCCCCEEECCCCccccccc---hhhhcCCCCCEEECcCCCCCC
Q 035922 474 LLMQGNKFYGPI-PSSLRSLRGLSVWDFAQNNLSGEIP---KFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 474 L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~ 531 (581)
|++++|++.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 999999998642 2678899999999999999986655 478899999999999998865
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=146.40 Aligned_cols=129 Identities=23% Similarity=0.315 Sum_probs=95.8
Q ss_pred cEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCC
Q 035922 399 IGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478 (581)
Q Consensus 399 ~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 478 (581)
+++++++|++. .+|..+. +.+ +.|++++|+++ .+|..+.++++|++|++++|++++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666666 5565443 345 67777777777 6667777778888888888888766667777888888888888
Q ss_pred CcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 479 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
|++.+..|..|..+++|+.|++++|.++...+..|..+++|++|++++|++...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 888877777788888888888888888766666677888888888888887654
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.4e-16 Score=142.57 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=116.4
Q ss_pred ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922 424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 503 (581)
+.+++++|.++ .+|..+. ++|++|++++|+++ .+|..|..+++|+.|++++|++++..+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57999999999 6776654 68999999999998 78899999999999999999999888889999999999999999
Q ss_pred ccccccchhhhcCCCCCEEECcCCCCCCCCCCC-ccccCCcCcccccCCCCCccC
Q 035922 504 NLSGEIPKFLAGFKLLENVNLSYNDLGARYVPT-EGVIKNSSATSVMGNSKLCGG 557 (581)
Q Consensus 504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~-~~~~~~l~~l~~~gN~~lcg~ 557 (581)
.+++..|..|..+++|++|++++|++++. .+. ...+++|+.+++.+||+.|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCccccEEEeCCCCeecCC
Confidence 99998888999999999999999999974 332 567889999999999998854
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=8.6e-17 Score=141.46 Aligned_cols=128 Identities=17% Similarity=0.171 Sum_probs=103.9
Q ss_pred CCCCcEEECCCCCCC-CCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEE
Q 035922 94 LSFLRRLHLDNNNFT-HAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDL 172 (581)
Q Consensus 94 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 172 (581)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999888 67888888899999999999988865 678888899999999998887777777778888888
Q ss_pred ECCCCccccc-CCccCcCCCCCcEEEccCCCCCCcCC---CccCCCCcccccccC
Q 035922 173 RSFMNNLTGS-IPSSLGNLSSIIRLSLTYNNIARSIP---DTLGYLENLSFLSLG 223 (581)
Q Consensus 173 ~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~l~ 223 (581)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888853 34678888888888888888876554 467778888888775
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.5e-16 Score=138.50 Aligned_cols=128 Identities=17% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCcEEECCCCccc-ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEE
Q 035922 396 KSLIGINFSKNNLS-GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKL 474 (581)
Q Consensus 396 ~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 474 (581)
++|++|++++|.+. +.+|..+..++.+ +.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEEL-EFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTC-CEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCC-cEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 4455545555555 5555555555533 455666667777777777765566666667777777
Q ss_pred ECCCCcCccc-CcccccCCCCCCEEECCCCccccccc---hhhhcCCCCCEEECcC
Q 035922 475 LMQGNKFYGP-IPSSLRSLRGLSVWDFAQNNLSGEIP---KFLAGFKLLENVNLSY 526 (581)
Q Consensus 475 ~Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~ls~ 526 (581)
++++|++.+. .+..+..+++|+.|++++|.+++..+ ..+..+++|++||+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777776653 23566777777777777777765544 4567777777777653
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.3e-16 Score=158.20 Aligned_cols=202 Identities=11% Similarity=0.078 Sum_probs=96.9
Q ss_pred CCCCCEEEeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCccc----CCCCcccccCCCCC
Q 035922 323 LVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFL----QGTIPSSLCQCKSL 398 (581)
Q Consensus 323 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L 398 (581)
+++|+.|++.+ .++.....+|.+|++|+.+++++|.+....+..|.++.++..+....+.. .......+..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777777 66655566677777777777777777656666677666666665554221 11222334455555
Q ss_pred c-EEECCCCcccccCCcchh----cccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcE
Q 035922 399 I-GINFSKNNLSGTIPPQLF----GLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEK 473 (581)
Q Consensus 399 ~-~L~ls~n~l~~~~p~~~~----~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 473 (581)
+ .+.+.... .++..+. ....+ ..+.+.++-...........+++|+.|+|++|+++...+..|.+|++|+.
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 5 34433221 1111111 11122 22333322111000000112445555555555555333344555555555
Q ss_pred EECCCCcCcccCcccccCCCCCC-EEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922 474 LLMQGNKFYGPIPSSLRSLRGLS-VWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 474 L~Ls~n~l~~~~p~~l~~l~~L~-~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
|++.+| +....+.+|.++++|+ .+++.+ .+....+..|.++++|+.+++++|+++.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 555554 4333334455555555 555554 4443334455555555555555555443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3e-15 Score=135.63 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=87.2
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN 177 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 177 (581)
+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45666666666 344333 257777777777777655556677777777777777777555555677777777777777
Q ss_pred cccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCC
Q 035922 178 NLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTI 231 (581)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 231 (581)
++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 777555555667777777777777776555555566777777777777666443
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.8e-15 Score=137.08 Aligned_cols=133 Identities=20% Similarity=0.195 Sum_probs=104.0
Q ss_pred CcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECC
Q 035922 398 LIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQ 477 (581)
Q Consensus 398 L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 477 (581)
.+.++++++++. .+|..+. +.+ +.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456677777766 5554432 455 778888888886556667788888888888888886666667888899999999
Q ss_pred CCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCCCCCC
Q 035922 478 GNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVP 535 (581)
Q Consensus 478 ~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip 535 (581)
+|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+. .|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-HH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc-Cc
Confidence 9988877777788888999999999998876666678888999999999998876 65
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.3e-14 Score=131.39 Aligned_cols=133 Identities=14% Similarity=0.126 Sum_probs=96.5
Q ss_pred ccCCCCCcEEECCCCcccccCCcchhccc-CCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922 392 LCQCKSLIGINFSKNNLSGTIPPQLFGLS-SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS 470 (581)
Q Consensus 392 l~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 470 (581)
+..+.+|++|++++|++. .+|. +..+. ++ +.|++++|.+++. ..+..+++|++|++++|++++..+..+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L-~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQF-DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCC-SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCC-CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 455667777777777776 4443 34444 66 7778888877753 46777888888888888888544444578888
Q ss_pred CcEEECCCCcCcccCcc--cccCCCCCCEEECCCCccccccchh----hhcCCCCCEEECcCCCCCC
Q 035922 471 LEKLLMQGNKFYGPIPS--SLRSLRGLSVWDFAQNNLSGEIPKF----LAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 471 L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~L~ls~N~l~~ 531 (581)
|+.|++++|++. .+|. .+..+++|+.|++++|.+. .+|.. +..+++|++||+++|....
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888885 4555 6788888888888888887 44553 7888888888888887654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=7e-17 Score=149.36 Aligned_cols=133 Identities=23% Similarity=0.218 Sum_probs=88.4
Q ss_pred cccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCC
Q 035922 391 SLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTS 470 (581)
Q Consensus 391 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 470 (581)
.+..+++|++|++++|++.+ +| .+..++.+ +.|++++|+++ .+|..+..+++|++|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L-~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENL-RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTC-CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCC-CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 55566666666666666663 55 66666666 66777777666 556556666777777777777764 44 4667777
Q ss_pred CcEEECCCCcCcccCc-ccccCCCCCCEEECCCCccccccch----------hhhcCCCCCEEECcCCCCCC
Q 035922 471 LEKLLMQGNKFYGPIP-SSLRSLRGLSVWDFAQNNLSGEIPK----------FLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 471 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~----------~l~~l~~L~~L~ls~N~l~~ 531 (581)
|+.|++++|++.+..+ ..+..+++|+.|++++|.+.+.+|. .+..+++|++|| +|.++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7777777777764322 3567777778888888777766554 267788888876 565543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=6.7e-15 Score=133.19 Aligned_cols=134 Identities=15% Similarity=0.107 Sum_probs=90.3
Q ss_pred cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922 90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI 169 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (581)
.+.++++|++|++++|.++. +|......++|++|++++|.+++. ..++.+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 34566778888888888774 444333334788888888887754 567777788888888887775544445777777
Q ss_pred CEEECCCCcccccCCc--cCcCCCCCcEEEccCCCCCCcCCCc----cCCCCcccccccCCccCC
Q 035922 170 KDLRSFMNNLTGSIPS--SLGNLSSIIRLSLTYNNIARSIPDT----LGYLENLSFLSLGGNMLS 228 (581)
Q Consensus 170 ~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~ 228 (581)
++|++++|++. .+|. .+..+++|++|++++|.++. +|.. +..+++|++|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777775 4554 56677777777777777753 3442 566666666666666543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.6e-16 Score=146.97 Aligned_cols=132 Identities=26% Similarity=0.292 Sum_probs=81.8
Q ss_pred cCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCC
Q 035922 367 SVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKN 446 (581)
Q Consensus 367 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~ 446 (581)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..+..++++ +.|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L-~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL-EELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC-SEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC-CEEECcCCcCCc-CC-ccccCCC
Confidence 44455555555555555553 34 4555556666666666655 555555555666 667777776664 34 4666677
Q ss_pred CCeeeccCCcCccccC-ccccCCCCCcEEECCCCcCcccCcc----------cccCCCCCCEEECCCCccc
Q 035922 447 LGVLDISGNLLSGEIP-ISLGSCTSLEKLLMQGNKFYGPIPS----------SLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 447 L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~----------~l~~l~~L~~L~ls~n~l~ 506 (581)
|++|++++|++++..+ ..+..+++|++|++++|++.+.+|. .+..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 7777777777763222 3566777777777777777665554 267778888776 55554
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.1e-13 Score=124.39 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=80.8
Q ss_pred ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922 424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 503 (581)
+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++.+..+..|..+++|+.|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46777777777 4665553 67788888888888766777778888888888888887666666778888888888888
Q ss_pred ccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 504 NLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
++++..+..|..+++|++|++++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88876666778888888888888888765
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.49 E-value=1.8e-12 Score=132.83 Aligned_cols=129 Identities=9% Similarity=0.081 Sum_probs=70.1
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCc-----ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCc
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLS-----GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLI 375 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 375 (581)
+|+.+.+. +.++..-...|.++++|+.+++.+|.+. .....+|.+|++|+.+++.+ .++..-...|.+|.+|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 44445442 2233333445566666666666665443 23345566666666666663 35444455666666677
Q ss_pred EEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcc
Q 035922 376 QLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHF 433 (581)
Q Consensus 376 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l 433 (581)
.+++..+ ++..-+..|.++ +|+.+++.+|......+..+..++.-+..|.+..+.+
T Consensus 327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6666444 443445566666 6777777666665333344444432225566665543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=3.4e-12 Score=130.75 Aligned_cols=151 Identities=9% Similarity=0.074 Sum_probs=103.8
Q ss_pred CCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCCCCeEeccCCccc-----ccCCccCCCCCCCc
Q 035922 301 TLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFS-----GNIPLSVGNLKMLI 375 (581)
Q Consensus 301 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~ 375 (581)
+|+.+++..+ ++..-..+|.+ .+|+.+.+. +.++.....+|.+|++|+.+++.+|.+. ...+..|.+|++|+
T Consensus 227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~ 303 (401)
T 4fdw_A 227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA 303 (401)
T ss_dssp TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence 4444444432 22223344555 678888884 4466556778888889999988887664 34556788888999
Q ss_pred EEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCC-CCCeeeccC
Q 035922 376 QLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLK-NLGVLDISG 454 (581)
Q Consensus 376 ~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~ 454 (581)
.+++.+ .++..-...|.+|.+|+.+++..+ +...-...|.++ +| +.+++++|.+....+..|..++ .++.|++..
T Consensus 304 ~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L-~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 304 RFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI-KEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC-CEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred eEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC-CEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 998884 466556677888888999888655 553444566666 77 7889988887755556676664 678888887
Q ss_pred CcCc
Q 035922 455 NLLS 458 (581)
Q Consensus 455 n~l~ 458 (581)
+.+.
T Consensus 380 ~~~~ 383 (401)
T 4fdw_A 380 ESVE 383 (401)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 7654
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.1e-13 Score=122.88 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=84.2
Q ss_pred ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCC
Q 035922 424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQN 503 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 503 (581)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|++.+..+..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46778888776 5666554 77888888888888777778888888888888888888666666788888888888888
Q ss_pred ccccccchhhhcCCCCCEEECcCCCCCCC
Q 035922 504 NLSGEIPKFLAGFKLLENVNLSYNDLGAR 532 (581)
Q Consensus 504 ~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 532 (581)
++.+..+..+..+++|++|++++|++...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 88866666688888888888888888764
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=6.4e-12 Score=129.02 Aligned_cols=327 Identities=10% Similarity=0.014 Sum_probs=148.0
Q ss_pred cccCCCCCcEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCC
Q 035922 90 YIGNLSFLRRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKI 169 (581)
Q Consensus 90 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 169 (581)
+|.++++|+.+.+.. .++..-..+|.++++|+.+++..+ ++..-..+|..+++|+.+.+..+ +.......|.++..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCS
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccc
Confidence 455666666666653 254444455666666666666543 43333445666666666555433 222333445444433
Q ss_pred CEEECCCCcccccCCccCcCCCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccc
Q 035922 170 KDLRSFMNNLTGSIPSSLGNLSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLN 249 (581)
Q Consensus 170 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 249 (581)
+......... .-...|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++..-...+.+
T Consensus 143 ~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~------------ 206 (394)
T 4fs7_A 143 EITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAE------------ 206 (394)
T ss_dssp EEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTT------------
T ss_pred ccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcc------------
Confidence 3222222211 223346666666666665432 2233345556666666655443 22111222223
Q ss_pred cCcccCChhhhcCCCCCceeeccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEE
Q 035922 250 RMQGNIPLDFGFTLPNLQHFGIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRL 329 (581)
Q Consensus 250 ~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 329 (581)
+..|+.+.+..+... +.+..... ..|+.+.+.... +..-...+..+..++.+
T Consensus 207 -------------~~~L~~i~~~~~~~~-------------i~~~~~~~-~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~ 258 (394)
T 4fs7_A 207 -------------CILLENMEFPNSLYY-------------LGDFALSK-TGVKNIIIPDSF-TELGKSVFYGCTDLESI 258 (394)
T ss_dssp -------------CTTCCBCCCCTTCCE-------------ECTTTTTT-CCCCEEEECTTC-CEECSSTTTTCSSCCEE
T ss_pred -------------ccccceeecCCCceE-------------eehhhccc-CCCceEEECCCc-eecccccccccccceeE
Confidence 333333322211100 00011111 144444443221 11222234455555555
Q ss_pred EeecCcCcccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCccc
Q 035922 330 YVWNNKLSGTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLS 409 (581)
Q Consensus 330 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 409 (581)
.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+.+.++ ++..-...|.+|.+|+.+++
T Consensus 259 ~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~l------ 327 (394)
T 4fs7_A 259 SIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDL------ 327 (394)
T ss_dssp EECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECC------
T ss_pred EcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEe------
Confidence 55544322 33344455555555555443321 223444555555555433 22222334444555554444
Q ss_pred ccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccc
Q 035922 410 GTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSL 489 (581)
Q Consensus 410 ~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l 489 (581)
..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.+|++|+.+++..+ +. .+..+|
T Consensus 328 -------------------p~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F 384 (394)
T 4fs7_A 328 -------------------PYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDF 384 (394)
T ss_dssp -------------------CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGB
T ss_pred -------------------CCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhhee
Confidence 322 33223345556666666666554 44344456666666666666543 21 233456
Q ss_pred cCCCCCCE
Q 035922 490 RSLRGLSV 497 (581)
Q Consensus 490 ~~l~~L~~ 497 (581)
.++++|+.
T Consensus 385 ~~c~~L~~ 392 (394)
T 4fs7_A 385 EDTTKFKW 392 (394)
T ss_dssp CTTCEEEE
T ss_pred cCCCCCcE
Confidence 66665554
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=3.7e-12 Score=130.80 Aligned_cols=332 Identities=11% Similarity=0.023 Sum_probs=157.8
Q ss_pred CCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCCcccccCCccCcC
Q 035922 110 AIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN 189 (581)
Q Consensus 110 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 189 (581)
+-..+|.++++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++......|.++.+|+.+.+..+ +...-...|.+
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~ 138 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG 138 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence 33456778888888888643 55455567888888888888654 44444556777777777655443 22122233443
Q ss_pred CCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcccccCcccCChhhhcCCCCCcee
Q 035922 190 LSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVVLNRMQGNIPLDFGFTLPNLQHF 269 (581)
Q Consensus 190 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 269 (581)
+..++........ ......|.++++|+.+.+.++.. .++...+..+.+|+.+
T Consensus 139 ~~~~~~~~~~~~~--~i~~~aF~~c~~L~~i~l~~~~~--------------------------~I~~~~F~~c~~L~~i 190 (394)
T 4fs7_A 139 CDFKEITIPEGVT--VIGDEAFATCESLEYVSLPDSME--------------------------TLHNGLFSGCGKLKSI 190 (394)
T ss_dssp CCCSEEECCTTCC--EECTTTTTTCTTCCEEECCTTCC--------------------------EECTTTTTTCTTCCBC
T ss_pred ccccccccCcccc--ccchhhhcccCCCcEEecCCccc--------------------------eeccccccCCCCceEE
Confidence 3322222111111 11122344444444443322211 1122222223333333
Q ss_pred eccccCcceeEeccCCcCcccCchhhhhcccCCcEEEccCCcccccCchhhcCCCCCCEEEeecCcCcccccccccCCCC
Q 035922 270 GIVFNNFTELLLLNDNNFGGLIPECISNFSTTLASLFLDNNKIFGSIPPGIGKLVNLRRLYVWNNKLSGTIPSAIGDLQN 349 (581)
Q Consensus 270 ~l~~n~~~~~l~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 349 (581)
.+ ..+ ++..-...+.++..|+.+.+..+... +........+
T Consensus 191 ~l------------------------------------~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 191 KL------------------------------------PRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp CC------------------------------------CTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred Ec------------------------------------CCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 22 221 11111223444444554444433221 1112223345
Q ss_pred CCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcC
Q 035922 350 LRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLS 429 (581)
Q Consensus 350 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls 429 (581)
|+.+.+.... +......|..+..++.+.+..+... .....+..+..++.+....+.+. ...+..+.++ +.+.+.
T Consensus 232 l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L-~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSL-TEVKLL 305 (394)
T ss_dssp CCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTC-CEEEEC
T ss_pred CceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccc-cccccc
Confidence 5555554322 2122334455555555555544322 23334555555555554433221 1233344444 455554
Q ss_pred CCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCcccccc
Q 035922 430 RNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEI 509 (581)
Q Consensus 430 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~ 509 (581)
.+ ++..-..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+++..+ +...-..+|.++++|+.+++..+ +. .+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~ 380 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY 380 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh
Confidence 43 33233445666777777777543 44344556667777777777655 44444456777777777777544 22 23
Q ss_pred chhhhcCCCCCEE
Q 035922 510 PKFLAGFKLLENV 522 (581)
Q Consensus 510 p~~l~~l~~L~~L 522 (581)
...|.++++|+.+
T Consensus 381 ~~~F~~c~~L~~I 393 (394)
T 4fs7_A 381 RYDFEDTTKFKWI 393 (394)
T ss_dssp GGGBCTTCEEEEE
T ss_pred hheecCCCCCcEE
Confidence 3455666655543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=4.4e-13 Score=120.33 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=83.0
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN 177 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 177 (581)
+++++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 67888888887 4665553 78888888888888777888888888888888888888766666788888888888888
Q ss_pred cccccCCccCcCCCCCcEEEccCCCCCCc
Q 035922 178 NLTGSIPSSLGNLSSIIRLSLTYNNIARS 206 (581)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 206 (581)
++++..+..+..+++|++|++++|.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88865555677788888888888877543
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=8.3e-13 Score=118.93 Aligned_cols=105 Identities=22% Similarity=0.241 Sum_probs=79.5
Q ss_pred cEEECCCCCCCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCcCcccCCcccCCCCCCCEEECCCC
Q 035922 98 RRLHLDNNNFTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQLLGNIPPEFGSLSKIKDLRSFMN 177 (581)
Q Consensus 98 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 177 (581)
+.++++++.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888886 5666554 78888888888888777778888888888888888888665555677888888888888
Q ss_pred cccccCCccCcCCCCCcEEEccCCCCCC
Q 035922 178 NLTGSIPSSLGNLSSIIRLSLTYNNIAR 205 (581)
Q Consensus 178 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 205 (581)
++++..+..+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8775444457777777777777777653
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=139.81 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=42.4
Q ss_pred CCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccc----cchh
Q 035922 445 KNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGE----IPKF 512 (581)
Q Consensus 445 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~----~p~~ 512 (581)
++|++|+|++|.++. .++..+..+++|++|+|++|.+.+. +++.+...++|+.|+|++|.++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 455555555555542 1223334455555555555555432 233444455555555555555432 2233
Q ss_pred hhcCCCCCEEECcCCCCC
Q 035922 513 LAGFKLLENVNLSYNDLG 530 (581)
Q Consensus 513 l~~l~~L~~L~ls~N~l~ 530 (581)
+...+.|++||+++|+++
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 344455555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.32 E-value=8.1e-14 Score=141.42 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=89.8
Q ss_pred CCCCCEEEeecCcCccccccccc-----CCCCCCeEeccCCcccccCCccC-CCCCCCcEEeecCcccCCCCcccc----
Q 035922 323 LVNLRRLYVWNNKLSGTIPSAIG-----DLQNLRMLGMSGNRFSGNIPLSV-GNLKMLIQLEVSENFLQGTIPSSL---- 392 (581)
Q Consensus 323 l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l---- 392 (581)
.+.|++|++++|.++......+. ..++|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677888888877644333332 22567777777776653222222 123455555555555543222221
Q ss_pred -cCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccc----cCCccccCCCCCCeeeccCCcCccc----cCc
Q 035922 393 -CQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTG----SLPIEVGNLKNLGVLDISGNLLSGE----IPI 463 (581)
Q Consensus 393 -~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 463 (581)
...++|+ .|++++|.++. .++..+..+++|++|+|++|.++.. ++.
T Consensus 151 ~~~~~~L~-------------------------~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 151 LHDQCQIT-------------------------TLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HSTTCCCC-------------------------EEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhcCCccc-------------------------eeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 1233444 45555554432 1233334556666666666666532 244
Q ss_pred cccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccccchhhhc
Q 035922 464 SLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG 515 (581)
Q Consensus 464 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~ 515 (581)
.+..+++|++|+|++|.+++. ++..+...++|+.|||++|.++......+..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 455566677777777776542 3334445667777777777776554444443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.3e-11 Score=124.49 Aligned_cols=102 Identities=19% Similarity=0.174 Sum_probs=54.8
Q ss_pred EECCCC-cccccCCcchhcccCCcceeEcCC-CcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCC
Q 035922 401 INFSKN-NLSGTIPPQLFGLSSLSISLDLSR-NHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQG 478 (581)
Q Consensus 401 L~ls~n-~l~~~~p~~~~~l~~L~~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 478 (581)
++++++ .++ .+|. +..+.+| +.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L-~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENL-TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCC-SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCe-eEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 454 4555 5555555 5555554 555544445555555555555555555555555555555555555555
Q ss_pred CcCcccCcccccCCCCCCEEECCCCccc
Q 035922 479 NKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 479 n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
|+|.+..+..|..++ |+.|++++|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555544444444443 555555555554
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=6.5e-10 Score=114.01 Aligned_cols=129 Identities=10% Similarity=0.170 Sum_probs=66.2
Q ss_pred hccCCC-CCCEEEccCCCCCCCCcccCcCCCCCCEEEccCCc---CcccCCcccCCCCCCCEEECCCCcccccCCccCcC
Q 035922 114 EIGRLR-RLRGLTLNNNSIGGEIPATMSRCSNIILMDLSVNQ---LLGNIPPEFGSLSKIKDLRSFMNNLTGSIPSSLGN 189 (581)
Q Consensus 114 ~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 189 (581)
+|.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++..-...+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 444443 3666666543 443444556666666666665542 33333445666666666555443 22233344566
Q ss_pred CCCCcEEEccCCCCCCcCCCccCCCCcccccccCCccCCCCCCccccCCCCccEEEcc
Q 035922 190 LSSIIRLSLTYNNIARSIPDTLGYLENLSFLSLGGNMLSGTIPSSIFNRSSITTFSVV 247 (581)
Q Consensus 190 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 247 (581)
+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++ .+....+....|+.+.+.
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIP 190 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEEC
T ss_pred hcccccccccce-eeeecccceecccccccccccce-ee-EeccccccccceeEEEEC
Confidence 666666666433 22333345566666666666543 22 333333344556666554
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=2.1e-11 Score=122.84 Aligned_cols=129 Identities=21% Similarity=0.171 Sum_probs=105.1
Q ss_pred ceeEcCCC-cccccCCccccCCCCCCeeeccC-CcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922 424 ISLDLSRN-HFTGSLPIEVGNLKNLGVLDISG-NLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501 (581)
Q Consensus 424 ~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 501 (581)
..++++++ +++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|++.+..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35799998 898 5888 99999999999996 99998777899999999999999999999999999999999999999
Q ss_pred CCccccccchhhhcCCCCCEEECcCCCCCCCCCCCccccC---CcCcccccCCCCCccC
Q 035922 502 QNNLSGEIPKFLAGFKLLENVNLSYNDLGARYVPTEGVIK---NSSATSVMGNSKLCGG 557 (581)
Q Consensus 502 ~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ip~~~~~~---~l~~l~~~gN~~lcg~ 557 (581)
+|+|++..+..+..++ |++|++++|++... .. ...+. ......+..+...|..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~-c~-l~~~~~~~~~~~~~l~~~~~~C~~ 144 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS-CA-LRWLQRWEEEGLGGVPEQKLQCHG 144 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC-GG-GHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC-Cc-cHHHHHHHHhCcccccccCCCCCC
Confidence 9999977777777776 99999999999864 32 11111 1223344556667754
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.16 E-value=7.2e-09 Score=106.16 Aligned_cols=132 Identities=12% Similarity=0.192 Sum_probs=65.8
Q ss_pred ccccCCCCCcEEECCCCcccccCCcchhcccCCcceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCC
Q 035922 390 SSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCT 469 (581)
Q Consensus 390 ~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 469 (581)
..|..+..|+.+.+..+... .-...+..+..| +.+.+. +.++..-..+|.++.+|+.++|..+ ++..-..+|.+|+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L-~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPAL-QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTC-CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccce-ecCccccccccc-ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 34555566666655443322 223334444555 555554 2333233445666667777776644 4433445666777
Q ss_pred CCcEEECCCCcCcccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCC
Q 035922 470 SLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDL 529 (581)
Q Consensus 470 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l 529 (581)
+|+.+.+..+ +...-..+|.++++|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777777543 443444567777777777776664321 3455566666666655443
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=4e-10 Score=113.31 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=51.7
Q ss_pred CCCCCCeeeccCCcCccccCcccc---CCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCCccccccchhhhc
Q 035922 443 NLKNLGVLDISGNLLSGEIPISLG---SCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQNNLSGEIPKFLAG 515 (581)
Q Consensus 443 ~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~ 515 (581)
.+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467777777777777643333332 467777777777777653 3334455677777777777776544444443
Q ss_pred -CCCCCEEECcCCC
Q 035922 516 -FKLLENVNLSYND 528 (581)
Q Consensus 516 -l~~L~~L~ls~N~ 528 (581)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456776665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=6.4e-10 Score=111.81 Aligned_cols=178 Identities=15% Similarity=0.137 Sum_probs=103.2
Q ss_pred cCCCCCCEEEeecCcCc---------ccccccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCccc
Q 035922 321 GKLVNLRRLYVWNNKLS---------GTIPSAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSS 391 (581)
Q Consensus 321 ~~l~~L~~L~L~~n~l~---------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 391 (581)
..+++|+.|.+...... +.+...+..+|+|+.|++++|.-. .++. + ..++|+.|++..|.+.......
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence 34556666666443221 123344455667777777665211 1222 2 2567777777766655332222
Q ss_pred cc--CCCCCcEEECCC--Cccccc-----CCcch--hcccCCcceeEcCCCcccccCCcccc---CCCCCCeeeccCCcC
Q 035922 392 LC--QCKSLIGINFSK--NNLSGT-----IPPQL--FGLSSLSISLDLSRNHFTGSLPIEVG---NLKNLGVLDISGNLL 457 (581)
Q Consensus 392 l~--~l~~L~~L~ls~--n~l~~~-----~p~~~--~~l~~L~~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~Ls~n~l 457 (581)
+. .+++|+.|+|+. +...+. +...+ ..+++| +.|++.+|.+.+..+..+. .+++|++|+|+.|.+
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~L-r~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL-KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTC-CEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCc-CEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 32 566777776642 111111 11111 235677 7888888877654333332 478899999999988
Q ss_pred ccc----cCccccCCCCCcEEECCCCcCcccCcccccC-CCCCCEEECCCCc
Q 035922 458 SGE----IPISLGSCTSLEKLLMQGNKFYGPIPSSLRS-LRGLSVWDFAQNN 504 (581)
Q Consensus 458 ~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~ls~n~ 504 (581)
++. ++..+..+++|+.|++++|.++...-..+.. + ...++++.++
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 763 3445567889999999999887655444543 3 3568888887
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.91 E-value=2.7e-07 Score=93.88 Aligned_cols=67 Identities=7% Similarity=0.060 Sum_probs=30.2
Q ss_pred ceeEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCC
Q 035922 424 ISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSL 492 (581)
Q Consensus 424 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 492 (581)
+.+.+.++.++..-..+|.++.+|+.++|..+ ++..-..+|.+|++|+.+.+..+ ++..-..+|.++
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 34444444443233344555555555555433 33233345555566665555433 332223344444
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.86 E-value=4e-07 Score=92.56 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=66.9
Q ss_pred CCCCCCeEeccCCcccccCCccCCCCCCCcEEeecCcccCCCCcccccCCCCCcEEECCCCcccccCCcchhcccCCcce
Q 035922 346 DLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVSENFLQGTIPSSLCQCKSLIGINFSKNNLSGTIPPQLFGLSSLSIS 425 (581)
Q Consensus 346 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~~ 425 (581)
....+..+.+...... .....+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+..+ +.
T Consensus 192 ~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KT 267 (379)
T ss_dssp TTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CE
T ss_pred ccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cc
Confidence 3344444444332221 22334445555555555433 22222334455555555555443 221222233334444 44
Q ss_pred eEcCCCcccccCCccccCCCCCCeeeccCCcCccccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECC
Q 035922 426 LDLSRNHFTGSLPIEVGNLKNLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFA 501 (581)
Q Consensus 426 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 501 (581)
+.+..+ +...-...|.++.+|+.+++.++.++..-..+|.+|++|+.+.|..+ +...-..+|.++++|+.+.+.
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 444332 22222334555555555555555555333445555555555555433 332333455555555555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=2.1e-08 Score=90.88 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=49.2
Q ss_pred cCCCCCCeeeccCCcCccc----cCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEEC--CCCccccc---
Q 035922 442 GNLKNLGVLDISGNLLSGE----IPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDF--AQNNLSGE--- 508 (581)
Q Consensus 442 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~l--s~n~l~~~--- 508 (581)
...++|++|+|++|++... +...+...++|++|+|++|.+.+. +.+.+...+.|+.|++ ++|.+...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3445555566666555431 223344445666666666666533 3344555566666666 66666543
Q ss_pred -cchhhhcCCCCCEEECcCCCCC
Q 035922 509 -IPKFLAGFKLLENVNLSYNDLG 530 (581)
Q Consensus 509 -~p~~l~~l~~L~~L~ls~N~l~ 530 (581)
+.+.+...+.|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3344455566777777776653
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=4.4e-08 Score=88.71 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=69.8
Q ss_pred ccCCCCCcEEECCCC-ccccc----CCcchhcccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCccc--
Q 035922 392 LCQCKSLIGINFSKN-NLSGT----IPPQLFGLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSGE-- 460 (581)
Q Consensus 392 l~~l~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~-- 460 (581)
+...+.|++|++++| .+... +...+...+++ ++|+|++|.+... +...+...++|++|+|++|.|+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L-~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYV-KKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSC-CEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCc-CEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 344555555555555 44321 22333344455 5666666666432 233344556777888888877642
Q ss_pred --cCccccCCCCCcEEEC--CCCcCccc----CcccccCCCCCCEEECCCCccc
Q 035922 461 --IPISLGSCTSLEKLLM--QGNKFYGP----IPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 461 --~p~~l~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
+...+...++|++|+| ++|.+... +.+.+...+.|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556667778888888 77888654 3345566688888888888875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=5.1e-08 Score=92.91 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=44.7
Q ss_pred cCCCCCCeeeccCCcCcc--ccCccccCCCCCcEEECCCCcCcccCcccccCCC--CCCEEECCCCccccccc-------
Q 035922 442 GNLKNLGVLDISGNLLSG--EIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLR--GLSVWDFAQNNLSGEIP------- 510 (581)
Q Consensus 442 ~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~ls~n~l~~~~p------- 510 (581)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++.+. +.+..+. +|+.|++++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 345566666666666664 3344555666666666666666543 2223333 66666666666665443
Q ss_pred hhhhcCCCCCEEE
Q 035922 511 KFLAGFKLLENVN 523 (581)
Q Consensus 511 ~~l~~l~~L~~L~ 523 (581)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355566666655
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=7.2e-08 Score=91.84 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCCCCe--eeccCCcCc---cccCccccCCCCCcEEECCCCcCcc--cCcccccCCCCCCEEECCCCccccccchhhhcC
Q 035922 444 LKNLGV--LDISGNLLS---GEIPISLGSCTSLEKLLMQGNKFYG--PIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGF 516 (581)
Q Consensus 444 l~~L~~--L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l 516 (581)
.+.|+. ++++.|+.. +.++....++++|+.|+|++|++.+ .+|..+..+++|+.|+|++|.+.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 344444 677777433 2222233578999999999999987 4567778999999999999999865 334445
Q ss_pred C--CCCEEECcCCCCCCCCCCC--------ccccCCcCccc
Q 035922 517 K--LLENVNLSYNDLGARYVPT--------EGVIKNSSATS 547 (581)
Q Consensus 517 ~--~L~~L~ls~N~l~~~~ip~--------~~~~~~l~~l~ 547 (581)
. +|++|++++|++.+. +|. ...+++|+.++
T Consensus 218 ~~l~L~~L~L~~Npl~~~-~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDT-FRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGG-CSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccc-cCcchhHHHHHHHHCcccCeEC
Confidence 4 899999999999987 764 23566666554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=7.2e-07 Score=78.77 Aligned_cols=83 Identities=12% Similarity=0.048 Sum_probs=41.2
Q ss_pred CCCeeeccCCcCccccCccccCCCCCcEEECCCCc-CcccCcccccCC----CCCCEEECCCCc-cccccchhhhcCCCC
Q 035922 446 NLGVLDISGNLLSGEIPISLGSCTSLEKLLMQGNK-FYGPIPSSLRSL----RGLSVWDFAQNN-LSGEIPKFLAGFKLL 519 (581)
Q Consensus 446 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~L 519 (581)
.|++||+++|.++..--..+..+++|+.|+|++|. +++..-..+..+ ++|+.|+|++|. ++..--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333444555555555555553 443333333332 245566665553 544333445555666
Q ss_pred CEEECcCCC
Q 035922 520 ENVNLSYND 528 (581)
Q Consensus 520 ~~L~ls~N~ 528 (581)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.7e-06 Score=76.35 Aligned_cols=83 Identities=8% Similarity=0.010 Sum_probs=60.4
Q ss_pred CCcceeEcCCCcccccCCccccCCCCCCeeeccCCc-CccccCccccCC----CCCcEEECCCCc-CcccCcccccCCCC
Q 035922 421 SLSISLDLSRNHFTGSLPIEVGNLKNLGVLDISGNL-LSGEIPISLGSC----TSLEKLLMQGNK-FYGPIPSSLRSLRG 494 (581)
Q Consensus 421 ~L~~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 494 (581)
.+ +.||+++|.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. +++.--..+..+++
T Consensus 62 ~L-~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KI-QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CE-EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eE-eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45 677777777765555556778888888888884 665444445553 478899998885 77655566778899
Q ss_pred CCEEECCCCc
Q 035922 495 LSVWDFAQNN 504 (581)
Q Consensus 495 L~~L~ls~n~ 504 (581)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.51 E-value=8.6e-05 Score=66.75 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=46.6
Q ss_pred ccCCCCCCeeeccCCcCcc----ccCccccCCCCCcEEECCCCcCccc----CcccccCCCCCCEEECCCC---cccc--
Q 035922 441 VGNLKNLGVLDISGNLLSG----EIPISLGSCTSLEKLLMQGNKFYGP----IPSSLRSLRGLSVWDFAQN---NLSG-- 507 (581)
Q Consensus 441 l~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ls~n---~l~~-- 507 (581)
+..-+.|+.|+|++|++.. .+.+.+..-++|+.|+|++|.|.+. +-+.+..-+.|+.|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3344556666666666543 2223334455666666666666532 2233444455666666654 2222
Q ss_pred --ccchhhhcCCCCCEEECcCCCC
Q 035922 508 --EIPKFLAGFKLLENVNLSYNDL 529 (581)
Q Consensus 508 --~~p~~l~~l~~L~~L~ls~N~l 529 (581)
.+.+.+..-+.|+.|++++|.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhCCCcCeEeccCCCc
Confidence 2334555566677777666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.30 E-value=0.00013 Score=65.54 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=62.8
Q ss_pred CCCCCcEEECCCC-cccc----cCCcchhcccCCcceeEcCCCccccc----CCccccCCCCCCeeeccCCcCcc----c
Q 035922 394 QCKSLIGINFSKN-NLSG----TIPPQLFGLSSLSISLDLSRNHFTGS----LPIEVGNLKNLGVLDISGNLLSG----E 460 (581)
Q Consensus 394 ~l~~L~~L~ls~n-~l~~----~~p~~~~~l~~L~~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~ 460 (581)
.-+.|++|++++| ++.. .+...+.....+ +.|+|++|+|... +...+..-+.|++|+|++|.|+. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L-~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHI-EKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCC-CEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCc-CEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3445555555553 4431 122333444455 5666666666532 22334445677777777777764 2
Q ss_pred cCccccCCCCCcEEECCCC---cCcc----cCcccccCCCCCCEEECCCCccc
Q 035922 461 IPISLGSCTSLEKLLMQGN---KFYG----PIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 461 ~p~~l~~l~~L~~L~Ls~n---~l~~----~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
+.+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3344556677888888754 3332 23445566677888888777653
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.0015 Score=54.69 Aligned_cols=58 Identities=16% Similarity=0.190 Sum_probs=47.0
Q ss_pred cEEECCCCcCc-ccCcccccCCCCCCEEECCCCccccccchhhhcCCCCCEEECcCCCCCC
Q 035922 472 EKLLMQGNKFY-GPIPSSLRSLRGLSVWDFAQNNLSGEIPKFLAGFKLLENVNLSYNDLGA 531 (581)
Q Consensus 472 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 531 (581)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47889999886 35665432 469999999999997777788999999999999998863
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.003 Score=52.81 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=46.1
Q ss_pred CeeeccCCcCc-cccCccccCCCCCcEEECCCCcCcccCcccccCCCCCCEEECCCCccc
Q 035922 448 GVLDISGNLLS-GEIPISLGSCTSLEKLLMQGNKFYGPIPSSLRSLRGLSVWDFAQNNLS 506 (581)
Q Consensus 448 ~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 506 (581)
..++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 35665432 47999999999999777778899999999999999774
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.02 E-value=71 Score=24.41 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=24.4
Q ss_pred CCCCCchhccCCCCCCEEEccCCCCCCCCcccCcCCCCCCEEEccC
Q 035922 107 FTHAIPPEIGRLRRLRGLTLNNNSIGGEIPATMSRCSNIILMDLSV 152 (581)
Q Consensus 107 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 152 (581)
++.+-...|.++..|+.+.+..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344445666666666666543 2323344566666666666554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=36.97 E-value=1e+02 Score=23.48 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=16.7
Q ss_pred ccccCCCCCCeEeccCCcccccCCccCCCCCCCcEEeec
Q 035922 342 SAIGDLQNLRMLGMSGNRFSGNIPLSVGNLKMLIQLEVS 380 (581)
Q Consensus 342 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 380 (581)
.+|.+|.+|+.+.|..+ ++..-...|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444443 222333344455555555444
Done!