BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035924
         (138 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q89QJ5|GLNE_BRAJA Glutamate-ammonia-ligase adenylyltransferase OS=Bradyrhizobium
          japonicum (strain USDA 110) GN=glnE PE=3 SV=1
          Length = 995

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 37 EALYSMFVEDPHVLERMDGAAAAGNNHFAMEMASLKPWLARKLNHLWLSPHARGFVGGIA 96
          E+L + F E PH+      A+      F   +A L+P  + +L  L + P  R  + GIA
Sbjct: 14 ESLAARFAEAPHI-----AASTTDERRFESWLAELEPAQSARLEALLVQPFGRNILVGIA 68


>sp|Q20EX3|RPOC2_OLTVI DNA-directed RNA polymerase subunit beta'' OS=Oltmannsiellopsis
            viridis GN=rpoC2 PE=3 SV=1
          Length = 1859

 Score = 30.4 bits (67), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 30/63 (47%)

Query: 2    KISSVTVRADQSSFEQRHIYNYIPTFSLIITMLRPEALYSMFVEDPHVLERMDGAAAAGN 61
            K + V V   Q  F + +   ++PT S   T+ R  A+  + +  PH+ ++   +A  G+
Sbjct: 1244 KDTFVKVNLSQFDFIESNQSRFVPTLSFTSTLNRVNAVQQISLTKPHIYQKFFLSAQRGS 1303

Query: 62   NHF 64
             H 
Sbjct: 1304 YHL 1306


>sp|Q9WV72|ASB3_MOUSE Ankyrin repeat and SOCS box protein 3 OS=Mus musculus GN=Asb3 PE=2
           SV=2
          Length = 525

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 80  NHLWLSPHARGFVGGIAIDVLFGWLRLSNKEQILKWKDDDGNTALHMRISRVHWK 134
           N  W+  H   +    A++ L   +   + E  +K K  +G  ALH+ +S+ HWK
Sbjct: 41  NRGWMPIHEAAYHN--AVECLQMLIHTDSSENYIKAKTFEGFCALHLAVSQGHWK 93


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.135    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,510,318
Number of Sequences: 539616
Number of extensions: 1877702
Number of successful extensions: 5616
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5613
Number of HSP's gapped (non-prelim): 5
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)