Query 035926
Match_columns 247
No_of_seqs 169 out of 625
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pl9_A Chlorophyll A-B binding 98.5 1.3E-07 4.5E-12 84.3 6.8 74 156-230 92-181 (243)
2 2bhw_A Chlorophyll A-B binding 98.3 5.5E-07 1.9E-11 79.1 5.1 38 156-193 176-213 (232)
3 3pl9_A Chlorophyll A-B binding 98.2 1.2E-06 4.1E-11 78.2 5.2 39 156-194 193-231 (243)
4 2wsc_4 Chlorophyll A-B binding 98.0 1.4E-07 4.8E-12 84.0 -4.2 33 155-187 90-122 (251)
5 2wsc_3 LHCA3, type II chloroph 97.9 1.1E-06 3.6E-11 79.5 -0.9 39 155-193 223-261 (276)
6 2wsc_2 LHCA2, type II chloroph 97.8 1.1E-06 3.8E-11 79.2 -1.8 36 155-190 216-251 (269)
7 2wsc_3 LHCA3, type II chloroph 97.8 1.2E-07 4.1E-12 85.6 -8.4 31 156-186 99-129 (276)
8 2wsc_2 LHCA2, type II chloroph 97.8 3.5E-06 1.2E-10 75.9 0.6 31 156-186 102-132 (269)
9 2bhw_A Chlorophyll A-B binding 97.6 3.5E-05 1.2E-09 67.7 3.9 27 156-182 61-87 (232)
10 2wsc_1 AT3G54890, LHCA1; photo 97.6 5.8E-06 2E-10 73.4 -1.4 37 155-191 186-223 (241)
11 2wsc_1 AT3G54890, LHCA1; photo 97.4 7.5E-06 2.6E-10 72.7 -3.1 74 156-230 83-175 (241)
12 2wsc_4 Chlorophyll A-B binding 97.4 2.2E-05 7.6E-10 69.9 -0.6 37 154-191 198-234 (251)
13 1pfi_A Major coat protein of P 23.2 1.4E+02 0.0047 20.6 4.5 31 179-209 12-42 (46)
No 1
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.52 E-value=1.3e-07 Score=84.35 Aligned_cols=74 Identities=28% Similarity=0.399 Sum_probs=55.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCcchHH---H--------HH-----HHHHHHHHHHHHHHhhhhccchhhhhhhh
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVG---Q--------TG-----NFICKAGVFVTVAGIILFRKNEDFQNLKN 219 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~---Q--------lg-----~~~g~~Ll~vtVagvil~rkneDl~~lk~ 219 (247)
.+++|++|||+||+|+++.++.|+++|....+ + ++ .+.....+-+.++|++.++|..+++..+.
T Consensus 92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~~~~~ 171 (243)
T 3pl9_A 92 FRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKR 171 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCCTTTT
T ss_pred HHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 45899999999999999999999998742211 0 00 01122334467899999999999888888
Q ss_pred ccccccccchh
Q 035926 220 LADEATLYDKQ 230 (247)
Q Consensus 220 L~~e~t~yDkq 230 (247)
++++.- |||-
T Consensus 172 ~~PG~~-FDPL 181 (243)
T 3pl9_A 172 LYPGGT-FDPL 181 (243)
T ss_dssp TCCCGG-GCTT
T ss_pred cCCCcc-hhhc
Confidence 999875 8874
No 2
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.29 E-value=5.5e-07 Score=79.14 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFI 193 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~ 193 (247)
.+.+|+.|||+||+||++.++.|.+||+|+++|+...+
T Consensus 176 ~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~ 213 (232)
T 2bhw_A 176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 213 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHH
T ss_pred HHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 45799999999999999999999999999999987544
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.20 E-value=1.2e-06 Score=78.20 Aligned_cols=39 Identities=31% Similarity=0.336 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHH
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFIC 194 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~g 194 (247)
.+.+|+.|||+||+||++.++.|++||+|.++|+...+.
T Consensus 193 ~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hla 231 (243)
T 3pl9_A 193 LQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhc
Confidence 357999999999999999999999999999999976443
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=98.03 E-value=1.4e-07 Score=84.02 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=30.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHH
Q 035926 155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVG 187 (247)
Q Consensus 155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~ 187 (247)
+.+++|++|||+||+||++.++.|++|+.|++.
T Consensus 90 ~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 90 WFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp TTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 467999999999999999999999999988774
No 5
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.91 E-value=1.1e-06 Score=79.49 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Q 035926 155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGNFI 193 (247)
Q Consensus 155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~~~ 193 (247)
..+.+|+.|||+|||||++.++.|++||+|+++++...+
T Consensus 223 ~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~Hl 261 (276)
T 2wsc_3 223 DLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHL 261 (276)
T ss_dssp --CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-----
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhc
Confidence 356899999999999999999999999999999986543
No 6
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.85 E-value=1.1e-06 Score=79.15 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHH
Q 035926 155 YLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTG 190 (247)
Q Consensus 155 f~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg 190 (247)
..+.+|+.|||+|||||++.++.|.+||+|+++++.
T Consensus 216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 467899999999999999999999999999998876
No 7
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=97.83 E-value=1.2e-07 Score=85.63 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=28.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCcchH
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVV 186 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil 186 (247)
.+++|++|||+||+|+++.++.|++++.|++
T Consensus 99 ~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp HHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 5689999999999999999999999988876
No 8
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.80 E-value=3.5e-06 Score=75.90 Aligned_cols=31 Identities=39% Similarity=0.399 Sum_probs=28.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCcchH
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVV 186 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil 186 (247)
.+++|++|||+||+|+++.++.|++++.|++
T Consensus 102 ~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 102 NVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp THHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 5689999999999999999999999987765
No 9
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.60 E-value=3.5e-05 Score=67.72 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhC
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTG 182 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG 182 (247)
.+++|++|||+||+|++..++.|+++.
T Consensus 61 ~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 61 NRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 358999999999999999999998764
No 10
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.58 E-value=5.8e-06 Score=73.38 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH-HHhCcchHHHHHH
Q 035926 155 YLPQAELLNGRAAMVGFFMGYIVD-ALTGLDVVGQTGN 191 (247)
Q Consensus 155 f~~~AEl~NGRlAMIGfv~al~~E-~~TG~gil~Qlg~ 191 (247)
..+.+|+.|||+||+||++.++.| .+||+|.++++..
T Consensus 186 ~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~ 223 (241)
T 2wsc_1 186 ELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 223 (241)
T ss_dssp CSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSC
T ss_pred HHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHH
Confidence 457899999999999999999999 5899999998864
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=97.40 E-value=7.5e-06 Score=72.69 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=46.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCcchHH-------------HH------HHHHHHHHHHHHHHHhhhhccchhhhh
Q 035926 156 LPQAELLNGRAAMVGFFMGYIVDALTGLDVVG-------------QT------GNFICKAGVFVTVAGIILFRKNEDFQN 216 (247)
Q Consensus 156 ~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~-------------Ql------g~~~g~~Ll~vtVagvil~rkneDl~~ 216 (247)
.+++|+.|||+||+|++..++.|+++..+..+ .+ +.+.....+.+.++|++...+..+.+.
T Consensus 83 ~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~~~ 162 (241)
T 2wsc_1 83 YKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDP 162 (241)
T ss_dssp SHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCCSS
T ss_pred HHHHHHhhchhHHhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45899999999999999999999754311110 00 001111122344578887776655556
Q ss_pred hhhccccccccchh
Q 035926 217 LKNLADEATLYDKQ 230 (247)
Q Consensus 217 lk~L~~e~t~yDkq 230 (247)
.+..|+++ +||+-
T Consensus 163 ~~~~yPgg-~fDPl 175 (241)
T 2wsc_1 163 EKKKYPGG-AFDPL 175 (241)
T ss_dssp CCSSSCSC-CSCSS
T ss_pred CCCCCCCC-ccccc
Confidence 66788887 78984
No 12
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.36 E-value=2.2e-05 Score=69.88 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=33.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHH
Q 035926 154 SYLPQAELLNGRAAMVGFFMGYIVDALTGLDVVGQTGN 191 (247)
Q Consensus 154 gf~~~AEl~NGRlAMIGfv~al~~E~~TG~gil~Qlg~ 191 (247)
...+..|+.|||+ ||||++.++.|.+||++.++++..
T Consensus 198 ~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~ 234 (251)
T 2wsc_4 198 LEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQ 234 (251)
T ss_dssp SSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTT
T ss_pred HHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHH
Confidence 3467899999999 999999999999999999998754
No 13
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=23.23 E-value=1.4e+02 Score=20.60 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=25.4
Q ss_pred HHhCcchHHHHHHHHHHHHHHHHHHHhhhhc
Q 035926 179 ALTGLDVVGQTGNFICKAGVFVTVAGIILFR 209 (247)
Q Consensus 179 ~~TG~gil~Qlg~~~g~~Ll~vtVagvil~r 209 (247)
...|++=+..++.++...|.+++|+|.++-+
T Consensus 12 IT~G~~Dm~si~~~IVGaLvil~VAGLiysm 42 (46)
T 1pfi_A 12 ITDGQGDMKAIGGYIVGALVILAVAGLIYSM 42 (46)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888889999999988753
Done!