BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035927
(153 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 119/187 (63%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MKN+DVISWT IV+G+ N GQ+D+AR+YF Q+PERDYV WTAMIDGYLR+NRF EAL LF
Sbjct: 269 MKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALF 328
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ SN++PDEFT+V ILTA MY KC
Sbjct: 329 REMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKC 388
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G+V KA++V ++M KDKFTWTAMIVGLAI+ +I PDE+TY+GVL
Sbjct: 389 GNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVL 448
Query: 136 SACTHNG 142
ACTH G
Sbjct: 449 CACTHAG 455
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 76/197 (38%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
VD+AR+ F + V W M+ GY RV +F+++ LF EM+ + P+ T+V +L+A
Sbjct: 158 VDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSA 217
Query: 82 Y---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTW 108
M+ CG++++AQ V M +D +W
Sbjct: 218 CSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISW 277
Query: 109 TAMIVGLA----------ISDPFP---------------------------------TIR 125
T+++ G A D P ++
Sbjct: 278 TSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVK 337
Query: 126 PDEVTYVGVLSACTHNG 142
PDE T V +L+AC H G
Sbjct: 338 PDEFTMVSILTACAHLG 354
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 45/165 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G++ ARQ F +P+ +W MI GY R+N + ++++ M SNI+PD FT +L
Sbjct: 55 GKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLL 114
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+ M+ C V+ A++V +
Sbjct: 115 KGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVV 174
Query: 107 TWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACT 139
TW M+ G L I + P+ VT V +LSAC+
Sbjct: 175 TWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACS 219
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/187 (54%), Positives = 120/187 (64%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK++DVISWT IV+G+ N GQ+DIAR+YF QMPERDYV WTAMIDGYL+VN F+EAL LF
Sbjct: 250 MKSRDVISWTAIVTGFANIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQTSN++PDEFT+V ILTA MY KC
Sbjct: 310 HEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNKVKNDAYVGNALIDMYFKC 369
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G+VEKA+ + M R DKFTWTAMIVGLAI+ D F ++ PDE+TYVGVL
Sbjct: 370 GNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFVQMLKASVTPDEITYVGVL 429
Query: 136 SACTHNG 142
ACTH G
Sbjct: 430 CACTHTG 436
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G D+AR F + D V W AMI Y R+ ++ + TLF EM+ + P T+V +L
Sbjct: 137 GLTDMARGIFDMSYKTDVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVL 196
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+A MY CG++ A + M +D
Sbjct: 197 SACSKLKDLESGQKVHKYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMKSRDVI 256
Query: 107 TWTAMIVGLA 116
+WTA++ G A
Sbjct: 257 SWTAIVTGFA 266
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 45/165 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ ARQ F +PE W M+ GY R++ + ++++ +M +++ PD +T ++
Sbjct: 36 GDMNYARQLFDTIPEPTVFHWNTMLKGYSRIDSPKLGVSMYLDMLKNDVLPDCYTYPFLI 95
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+ MY CG + A+ + + D
Sbjct: 96 KGFKKDIAFEYGKELHCHVVKYGLGSNVFVQNALINMYSLCGLTDMARGIFDMSYKTDVV 155
Query: 107 TWTAMIVG---LAISDPFPT---------IRPDEVTYVGVLSACT 139
TW AMI + D T + P VT V VLSAC+
Sbjct: 156 TWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACS 200
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 57/189 (30%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
DV++W ++S Y Q D + F +M ++
Sbjct: 153 DVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVH 212
Query: 36 ----DYVLWT------AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85
D+V+ + A+ID Y AL +F M++ ++ + I+T +
Sbjct: 213 KYISDHVVQSNLIVENALIDMYAACGEMSVALGIFESMKSRDV----ISWTAIVTG--FA 266
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
G ++ A++ +M +D +WTAMI G + F ++PDE T V
Sbjct: 267 NIGQLDIARKYFDQMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVS 326
Query: 134 VLSACTHNG 142
+L+AC G
Sbjct: 327 ILTACAQLG 335
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 120/187 (64%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ISWT IVSG+ N G++D+AR YF +MPE+DYV WTAMIDGY+R NRF+EAL LF
Sbjct: 280 MNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELF 339
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +N++PDEFT+V +LTA MY KC
Sbjct: 340 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC 399
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
GDV+KA+ + R+M ++DKFTWTAMIVGLA++ D F +I PDE+TY+GVL
Sbjct: 400 GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 459
Query: 136 SACTHNG 142
SACTH G
Sbjct: 460 SACTHTG 466
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 79/214 (36%), Gaps = 76/214 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V T +V Y+ GQ+D AR F P+ D + W +I Y +V +F E+ LF M+
Sbjct: 152 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 211
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ P T+V +L+A MY CG+++
Sbjct: 212 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 271
Query: 92 KAQRVLR-------------------------------KMLRKDKFTWTAMIVGLAISDP 120
A + R KM KD +WTAMI G S+
Sbjct: 272 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 331
Query: 121 FP------------TIRPDEVTYVGVLSACTHNG 142
F ++PDE T V VL+AC H G
Sbjct: 332 FKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 45/165 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G AR+ F ++PE + +W MI GY R++ + ++L+ EM ++PD +T +
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+ MY CG ++ A+ V + D
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185
Query: 107 TWTAMIVGLAISDPFPTIR------------PDEVTYVGVLSACT 139
TW +I F R P VT V VLSAC+
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 230
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 187 bits (474), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/187 (50%), Positives = 120/187 (64%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ISWT IVSG+ N G++D+AR YF +MPE+DYV WTAMIDGY+R NRF+EAL LF
Sbjct: 301 MNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELF 360
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +N++PDEFT+V +LTA MY KC
Sbjct: 361 RNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKC 420
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
GDV+KA+ + R+M ++DKFTWTAMIVGLA++ D F +I PDE+TY+GVL
Sbjct: 421 GDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVL 480
Query: 136 SACTHNG 142
SACTH G
Sbjct: 481 SACTHTG 487
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 79/214 (36%), Gaps = 76/214 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V T +V Y+ GQ+D AR F P+ D + W +I Y +V +F E+ LF M+
Sbjct: 173 NVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVME 232
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ P T+V +L+A MY CG+++
Sbjct: 233 DKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMD 292
Query: 92 KAQRVLR-------------------------------KMLRKDKFTWTAMIVGLAISDP 120
A + R KM KD +WTAMI G S+
Sbjct: 293 SALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNR 352
Query: 121 FP------------TIRPDEVTYVGVLSACTHNG 142
F ++PDE T V VL+AC H G
Sbjct: 353 FKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 386
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 45/165 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G AR+ F ++PE + +W MI GY R++ + ++L+ EM ++PD +T +
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+ MY CG ++ A+ V + D
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206
Query: 107 TWTAMIVGLAISDPFPTIR------------PDEVTYVGVLSACT 139
TW +I F R P VT V VLSAC+
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 251
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 118/187 (63%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT IV+G+ N ++D+AR+YF QMPERDYV WTAMIDGYLR+NRF+E LTLF
Sbjct: 301 MKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLF 360
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ SN++PDEFT+V ILTA MY KC
Sbjct: 361 RDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKC 420
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G+VEKA+++ +M +KDKFTWTAMIVGLA + ++ PDE+TY+GV+
Sbjct: 421 GNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVM 480
Query: 136 SACTHNG 142
ACTH G
Sbjct: 481 CACTHVG 487
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V AR+ F ++P+ +W MI GY R+N ++L+ M NI+PD FT +L
Sbjct: 83 GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
Query: 80 TAY---MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+ M K G V V+ L + F I
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFI 178
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 73/202 (36%), Gaps = 79/202 (39%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT--SNIRPDEFTIVR 77
G V+ AR+ F + V W ++ GY R R+ E+ LF EM+ + P+ T+V
Sbjct: 185 GLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVL 244
Query: 78 ILTAY----------------------------------MYCKCGDVEKAQRVLRKMLRK 103
+L+A M+ CG+++ A+ V +M +
Sbjct: 245 MLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR 304
Query: 104 DKFTWTAMIVGLAIS----------DPFP------------------------------- 122
D +WT+++ G A + D P
Sbjct: 305 DVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQ 364
Query: 123 --TIRPDEVTYVGVLSACTHNG 142
++PDE T V +L+AC H G
Sbjct: 365 MSNVKPDEFTMVSILTACAHLG 386
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/184 (50%), Positives = 114/184 (61%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDVISWT IV+G++N GQVD AR+YF +MPERD+V WTAMIDGYLR+N ++EAL LF EM
Sbjct: 195 KDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREM 254
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
QTS I+PDEFT+V +LTA MY KCG+V
Sbjct: 255 QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNV 314
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
E A + + ++DKFTWTAM+VGLAI+ ++ PDEVTYVGVLSAC
Sbjct: 315 EMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSAC 374
Query: 139 THNG 142
TH G
Sbjct: 375 THTG 378
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 2 KNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D ++ Y G V++A F +P+RD WTAM+ G EAL
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+F +M +++ PDE T V +L+A + G V++ ++ M
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTH--TGMVDEGKKFFASM 390
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 60/156 (38%), Gaps = 39/156 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + ARQ F +PE W M GY R+ + ++L+ EM N++PD +T +
Sbjct: 62 GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+ MY CG ++ A+ + + D
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181
Query: 107 TWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNG 142
TW AMI G + I+ D +++ +++ + G
Sbjct: 182 TWNAMISG------YNRIKKDVISWTAIVTGFVNTG 211
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/187 (49%), Positives = 115/187 (61%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK++DVISWT IV+G+ N GQV +AR YF +MPERD+V WTAMIDGYL+VNRF+E L+LF
Sbjct: 281 MKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLF 340
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ +NI+PDEFT+V ILTA MY C
Sbjct: 341 REMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNC 400
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G+VEKA R+ M +DK +WTA+I GLAI+ D F +I PDEVT +GVL
Sbjct: 401 GNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVL 460
Query: 136 SACTHNG 142
ACTH+G
Sbjct: 461 CACTHSG 467
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 81/216 (37%), Gaps = 76/216 (35%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ +V ++ Y G+V +AR F + + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ + P T+V +L+A MY CGD
Sbjct: 211 MERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGD 270
Query: 90 VEKAQRVLRKMLRKDKFTWTAMI--------VGLAIS--DPFP----------------- 122
++ A + M +D +WTA++ VGLA + D P
Sbjct: 271 MDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQV 330
Query: 123 ----------------TIRPDEVTYVGVLSACTHNG 142
I+PDE T V +L+AC H G
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLG 366
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRP 70
++ Y N G V+ A + F MP RD + WTA+I G L +N + EAL +F +M ++I P
Sbjct: 393 LIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG-LAINGYGEEALDMFSQMLKASITP 451
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
DE T + +L A + G V+K ++ +M
Sbjct: 452 DEVTCIGVLCACTH--SGMVDKGKKFFARM 479
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 45/165 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT----- 74
G ++ AR F MP ++ +W MI GY RV A++++ EM + PDE+T
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 75 ----------------------------IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
V+ ++Y G+V A+ V + + D
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186
Query: 107 TWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
TW MI G S F + P +T V VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 107/187 (57%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT IV GY+ RG + +AR YF QMP RD + WT MIDGYLR F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ++ + PDEFT+V +LTA MY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G EKAQ+V M ++DKFTWTAM+VGLA + +I+PD++TY+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 477 SACNHSG 483
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 74/200 (37%), Gaps = 76/200 (38%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +D+AR F + + D W MI GY R+ + E++ L EM+ + + P T++ +L
Sbjct: 184 GLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVL 243
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
+A Y CG+++ A R+ R M +D
Sbjct: 244 SACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVI 303
Query: 107 TWTAMIVG------LAIS----DPFPT--------------------------------- 123
+WT+++ G L ++ D P
Sbjct: 304 SWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAG 363
Query: 124 IRPDEVTYVGVLSACTHNGN 143
+ PDE T V VL+AC H G+
Sbjct: 364 MIPDEFTMVSVLTACAHLGS 383
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 46/166 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + PD T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 80 TAY----------------------------------MYCKCGDVEKAQRVLRKMLRKDK 105
MY CG ++ A+ V + ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 106 FTWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACT 139
F+W MI G L + + P VT + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 107/187 (57%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT IV GY+ RG + +AR YF QMP RD + WT MIDGYLR F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ++ + PDEFT+V +LTA MY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G EKAQ+V M ++DKFTWTAM+VGLA + +I+PD++TY+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 477 SACNHSG 483
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 76/208 (36%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G +D+AR F + + D W MI GY R+ + E++ L EM+ + + P
Sbjct: 176 LVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPT 235
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
T++ +L+A Y CG+++ A R+ R
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 99 KMLRKDKFTWTAMIVG------LAIS----DPFPT------------------------- 123
M +D +WT+++ G L ++ D P
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
+ PDE T V VL+AC H G+
Sbjct: 356 FREMQSAGMIPDEFTMVSVLTACAHLGS 383
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 46/166 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + PD T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 80 TAY----------------------------------MYCKCGDVEKAQRVLRKMLRKDK 105
MY CG ++ A+ V + ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 106 FTWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACT 139
F+W MI G L + + P VT + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + V+SWT ++SG G+VD AR F +MPERD V WTAMIDGY++ RFREAL +F
Sbjct: 206 MQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMF 265
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ SN+ DEFT+V ++TA MY KC
Sbjct: 266 REMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKC 325
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G +E+A V + M +DKFTWTA+I+GLA++ + F + PDEVT++GVL
Sbjct: 326 GSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVL 385
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 386 TACTHAG 392
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 35/117 (29%)
Query: 34 ERDY-VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---------- 82
ERD V+W A+I G+ R RF EA F +M + P T V +L+A
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164
Query: 83 ------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY +C D+E A ++ M + +WT+++ GL
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGL 221
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + A++D Y A LF MQ ++ + +L+ + G V++A+
Sbjct: 179 DLRVENALVDMYAECADMESAWKLFDGMQVRSV----VSWTSLLSGLT--RLGRVDEARD 232
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
+ +M +D +WTAMI G + F + DE T V V++AC G
Sbjct: 233 LFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLG 291
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 109/187 (58%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++ +SWT ++SG++ GQVD AR F MPERD V WTAMIDGY++ +FREAL +F
Sbjct: 184 MEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S +R DEFT+V ++TA MY KC
Sbjct: 244 REMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKC 303
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP--------FPTIR----PDEVTYVGVL 135
G +++A V ++M +DKFTWTA+I+GLA++ + +R PDEVT++GVL
Sbjct: 304 GSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVL 363
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 364 TACTHAG 370
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 18/119 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + A+ID Y + A LF M+ N + +++ ++ + G V++A+
Sbjct: 157 DLKVGNALIDMYAECSEMDAAWELFEGMEVRNT----VSWTSVISGFL--RLGQVDQART 210
Query: 96 VLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
+ M +D +WTAMI G + F +R DE T V V++AC G
Sbjct: 211 LFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLG 269
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 55/142 (38%), Gaps = 36/142 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDY---VLWTAMIDGYLRVNRFREALTLFPEMQTS 66
+ +V Y RG +AR P R V+W A+I G+ R +FR + F +M +
Sbjct: 58 SSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRSRQFRLSCCSFVDMVRT 117
Query: 67 NIRPDEFTIVRILTAY---------------------------------MYCKCGDVEKA 93
+ P T + +L+A MY +C +++ A
Sbjct: 118 GVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAA 177
Query: 94 QRVLRKMLRKDKFTWTAMIVGL 115
+ M ++ +WT++I G
Sbjct: 178 WELFEGMEVRNTVSWTSVISGF 199
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/187 (43%), Positives = 106/187 (56%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + V+SWT ++SG GQVD AR F +MPERD V WTAMIDGY+ RFREAL +F
Sbjct: 184 MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ SN+ DEFT+V ++TA MY KC
Sbjct: 244 REMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKC 303
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G +E+A V + M +DKFTWTA+I+GLA++ + F + PDEVT++GVL
Sbjct: 304 GSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVL 363
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 364 TACTHAG 370
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + + SWT ++SG + GQVD AR F MPERD + WTAMIDGY++V RFR+AL F
Sbjct: 222 MQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETF 281
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +R DEFT+V ++TA MY KC
Sbjct: 282 RYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKC 341
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G +E+A V + M +DKFTWTA+I+GLA++ D F + PDEVT+VGVL
Sbjct: 342 GSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVL 401
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 402 TACTHAG 408
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 18/113 (15%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A++D Y A LF MQ ++ I ++ + G V++A+ + M
Sbjct: 201 ALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLV------RSGQVDRARDLFDHMP 254
Query: 102 RKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSACTHNG 142
+D WTAMI G D T +R DE T V V++AC G
Sbjct: 255 ERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLG 307
>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 100/162 (61%), Gaps = 20/162 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K VI WT +VSGY+N GQ+D AR+ F + P RD VLWTAMI+GY++ NRF +A+ LF
Sbjct: 228 MPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALF 287
Query: 61 PEMQTSNIRPDEFTIVRILT--------AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
EMQ + PD FT+V +LT MY KCG +EK+ + + KD +WT++I
Sbjct: 288 REMQIKRVSPDRFTLVALLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSII 347
Query: 113 VGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
GLA++ ++PD++T++GVLSAC+H G
Sbjct: 348 CGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGG 389
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+V RQ F +MP+RD V W +I GY++ R+ +A+ +F Q N P + I
Sbjct: 177 YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVF--RQIFNDMPIKTVI 234
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PT 123
Y CG +++A+ + + +D WTAMI G + F
Sbjct: 235 CWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKR 294
Query: 124 IRPDEVTYVGVLS 136
+ PD T V +L+
Sbjct: 295 VSPDRFTLVALLT 307
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 105/187 (56%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+VI WT +VSGY+N G++D AR+ F + P +D VLWTAMI+GY++ N F EA+ LF
Sbjct: 18 MPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALF 77
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ ++PD+F +V +LT MY KC
Sbjct: 78 QEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSKC 137
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G +EKA R+ + KD TWT++I GLA++ + F ++ PDEVT++GVL
Sbjct: 138 GCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAIPDEVTFIGVL 197
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 198 SACSHGG 204
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
MYCKCG + A+++ +M K+ WT+M+ G
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSG 32
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 100/187 (53%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K VI WT +VSGY+N GQ+D AR+ F + P RD VLWTAMI+GY++ NRF +A+ LF
Sbjct: 294 MPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALF 353
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ + PD FT+V +LT MY KC
Sbjct: 354 REMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKC 413
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +EK+ + + KD +WT++I GLA++ ++PD++T++GVL
Sbjct: 414 GFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVL 473
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 474 SACSHGG 480
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 33/132 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFT 74
Y G+V RQ F +MP+RD V W +I GY++ R+ +A+ +F M Q S++RP+E T
Sbjct: 177 YAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEAT 236
Query: 75 IVRILTAY--------------------------------MYCKCGDVEKAQRVLRKMLR 102
+V L+A MYCKCG + A+ + M
Sbjct: 237 VVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPI 296
Query: 103 KDKFTWTAMIVG 114
K WT+M+ G
Sbjct: 297 KTVICWTSMVSG 308
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 19/156 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G ++ + + F + E+D WT++I G + +AL LF EM
Sbjct: 399 DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMV 458
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
+ ++PD+ T + +L+A + G VE+ ++ R M + + + ++G A
Sbjct: 459 QTGVKPDDITFIGVLSACSH--GGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAG 516
Query: 117 -------ISDPFPTIRPDEVT--YVGVLSACTHNGN 143
+ + P + + + Y +LSAC +GN
Sbjct: 517 QLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGN 552
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 81/203 (39%), Positives = 104/203 (51%), Gaps = 56/203 (27%)
Query: 2 KNKDVISWTDIVSGYINRG----------QVDIARQYFAQMPERDYVLWTAMIDGYLRVN 51
K KD + W + YIN G ++D A+ F M RD V WTAMIDGYLR+N
Sbjct: 203 KLKD-LEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMN 261
Query: 52 RFREALTLFPEMQTSNIRPDEFTIVRILTAY----------------------------- 82
F AL LF EMQ SN++PDEFT+V IL A
Sbjct: 262 HFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGN 321
Query: 83 ----MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRP 126
MY KCG+V KA++V ++M +KDKFTWT MIVGLAI+ ++ P
Sbjct: 322 ALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTP 381
Query: 127 DEVTYVGVLSACTHNGNETFVIN 149
DE+TY+GVL AC + ++F N
Sbjct: 382 DEITYIGVLCACMVDKGKSFFTN 404
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT----- 74
G VD+A + F + V W M+ GY RV +F+ + L S ++ E+
Sbjct: 156 GIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFK 215
Query: 75 -IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------ 121
I + +M+ CG++++AQ V M +D +WTAMI G + F
Sbjct: 216 YINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQM 275
Query: 122 PTIRPDEVTYVGVLSAC 138
++PDE T V +L AC
Sbjct: 276 SNVKPDEFTMVSILIAC 292
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74
G ++ A Q F +P +W MI GY +++ ++++ M TSNI+PD FT
Sbjct: 55 GNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFT 109
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 101/187 (54%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+VI WT +VSGY N G+++ AR+ F P RD V+WTAMI+GY++ NRF EA+ LF
Sbjct: 299 MPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALF 358
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ ++PD+F +V +LT MY KC
Sbjct: 359 REMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTALIEMYAKC 418
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +EKA + + KD +WT++I GLA++ +RPD++T++GVL
Sbjct: 419 GFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPDDITFIGVL 478
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 479 SACSHGG 485
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 33/139 (23%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ-TSNIR 69
++ Y D+ + F +MP+RD + W MI GY++ RF +A+ +F MQ S +
Sbjct: 177 SLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLM 236
Query: 70 PDEFTIVRILTAY--------------------------------MYCKCGDVEKAQRVL 97
PDE T+V L+A MYCKCG + A+ V
Sbjct: 237 PDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVF 296
Query: 98 RKMLRKDKFTWTAMIVGLA 116
+M K+ WT M+ G A
Sbjct: 297 EEMPSKNVICWTTMVSGYA 315
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 57/193 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-------------------------- 34
M ++DVISW ++SGY+ + + A F +M E
Sbjct: 198 MPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLEL 257
Query: 35 --------RDYVLWT-----AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
RD V +T A++D Y + A +F EM + N+ I
Sbjct: 258 GKKIHHYVRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNV------ICWTTMV 311
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEV 129
Y CG++E+A+ + +D WTAMI G + F ++PD+
Sbjct: 312 SGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKF 371
Query: 130 TYVGVLSACTHNG 142
V +L+ C G
Sbjct: 372 IVVSLLTGCAQTG 384
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G ++ A + F + +D WT++I G + +AL LF +M+
Sbjct: 404 DAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMK 463
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ +RPD+ T + +L+A + G VE+ ++ M
Sbjct: 464 QAGVRPDDITFIGVLSACSH--GGLVEEGRKFFNSM 497
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 100/187 (53%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+VI WT +VSGY + G +D AR+ F + P RD VLWTAMI+GY++ N F EAL LF
Sbjct: 276 MGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLF 335
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ +RPD F +V +L +Y KC
Sbjct: 336 RKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSITLDRVVGTALVDVYAKC 395
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G VEKA V +M +D +WT++I GLA++ D F + RPD++T++GVL
Sbjct: 396 GCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDITFIGVL 455
Query: 136 SACTHNG 142
+AC H G
Sbjct: 456 TACNHGG 462
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 33/154 (21%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D ++ Y G++++A++ F ++PERD V W +I Y+ +F +A+ +F M
Sbjct: 148 DACVCNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDAIAVFRRMR 207
Query: 64 QTSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVE 91
+ SN++ DE T+V L+A MYCKCG V+
Sbjct: 208 RESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGNALLDMYCKCGCVD 267
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
KA+ + +M K+ WT+M+ G A + R
Sbjct: 268 KARAIFDEMGNKNVICWTSMVSGYASNGSLDEAR 301
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G V+ A + F +M ERD WT++I G +AL F +M+
Sbjct: 381 DRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKALDFFSQME 440
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105
+ RPD+ T + +LTA + G VE+ +R M + K
Sbjct: 441 EAGFRPDDITFIGVLTACNH--GGLVEEGRRYFDSMTKTYK 479
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 44/166 (26%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
+RG + A + + V++ MI + FR+ L LF E++ + PD FT+
Sbjct: 62 SRGSIRYAERVLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPP 121
Query: 78 ILTAY-------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+ A MY G +E A++V ++ +D
Sbjct: 122 VFKAMGCLGKVVEGEKVHGYVVKSGFDACVCNSVMGMYGALGKMEVAKKVFDEIPERDVV 181
Query: 107 TWTAMIVGLAISDPF-------------PTIRPDEVTYVGVLSACT 139
+W +I F ++ DE T V LSAC+
Sbjct: 182 SWNVLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACS 227
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK ++SWT +V GY G +D+A + F +MP++D V W AMI GY+ NR +EAL LF
Sbjct: 269 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 328
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ NI PDE T+V L+A MY KC
Sbjct: 329 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 388
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G + KA +V +++ ++ TWTA+I GLA+ ++ PDEVT++G+L
Sbjct: 389 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 448
Query: 136 SACTHNG 142
SAC H G
Sbjct: 449 SACCHGG 455
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 84/216 (38%), Gaps = 76/216 (35%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ ++ ++ G +D AR+ F + RD V W +MI+GY+R EAL + E
Sbjct: 139 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 198
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ I+PDE T++ ++++ MY KCG+
Sbjct: 199 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 258
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFP----------------- 122
+E A+++ M K +WT M+VG A S D P
Sbjct: 259 LESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHA 318
Query: 123 ----------------TIRPDEVTYVGVLSACTHNG 142
I PDEVT V LSAC+ G
Sbjct: 319 NRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLG 354
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ A Q F ++P R+ + WTA+I G A+ F EM +++
Sbjct: 379 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 438
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PDE T + +L+A C G VE+ ++ +M K
Sbjct: 439 PDEVTFLGLLSA--CCHGGLVEEGRKYFSQMSSK 470
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 70/187 (37%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK ++SWT +V GY G +D+A + F +MP++D V W AMI GY+ NR +EAL LF
Sbjct: 241 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 300
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ NI PDE T+V L+A MY KC
Sbjct: 301 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 360
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G + KA +V +++ ++ TWTA+I GLA+ ++ PDEVT++G+L
Sbjct: 361 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 420
Query: 136 SACTHNG 142
SAC H G
Sbjct: 421 SACCHGG 427
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ ++ ++ G +D AR+ F + RD V W +MI+GY A LF
Sbjct: 183 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGY--CGNLESARKLFDS 240
Query: 63 MQTSNIRPDEFTIVRILTAYM-YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------- 114
M T+V T + Y + G ++ A ++ +M KD W AMI G
Sbjct: 241 MTNK-------TMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRG 293
Query: 115 ---LAISDPFP--TIRPDEVTYVGVLSACTHNG 142
LA+ + I PDEVT V LSAC+ G
Sbjct: 294 KEALALFNEMQAMNINPDEVTMVSCLSACSQLG 326
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ A Q F ++P R+ + WTA+I G A+ F EM +++
Sbjct: 351 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 410
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PDE T + +L+A C G VE+ ++ +M K
Sbjct: 411 PDEVTFLGLLSA--CCHGGLVEEGRKYFSQMSSK 442
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT +V GY G ++ A + F +MPE+D VLW A+I G+++ R +EAL LF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S++ PD+ T+V L+A MY KC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVGVL 135
G+++KA +V +M ++ TWTA+I GLA+ P I PDE+T++GVL
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 136 SACTHNG 142
SAC H G
Sbjct: 497 SACCHGG 503
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ I+ ++ G++ AR+ F + RD V W ++I+GY+R EA L+ +
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M N+ PDE T++ +++A MY KC +
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKN 306
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+E A+ + M +K +WT M++G A
Sbjct: 307 IEAAKILFENMTKKTVVSWTTMVIGYA 333
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A Q F +MP R+ + WTA+I G + A++ F EM + +
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PDE T + +L+A C G V++ + +M K
Sbjct: 487 PDEITFIGVLSA--CCHGGLVDQGRDYFYQMTSK 518
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV------------------------- 38
+D++SW I++GY+ G D A + +M E + +
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 39 --------------LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM- 83
L A++D Y++ A LF M T+V T +
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKK-------TVVSWTTMVIG 331
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTY 131
Y K G +E A R+ +M KD W A+I G LA+ ++ PD++T
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391
Query: 132 VGVLSACTHNG 142
V LSAC+ G
Sbjct: 392 VNCLSACSQLG 402
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 98/187 (52%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT +V GY G ++ A + F +MPE+D VLW A+I G+++ R +EAL LF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S++ PD+ T+V L+A MY KC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVGVL 135
G+++KA +V +M ++ TWTA+I GLA+ P I PDE+T++GVL
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 136 SACTHNG 142
SAC H G
Sbjct: 497 SACCHGG 503
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ I+ ++ G++ AR+ F + RD V W ++I+GY+R EA L+ +
Sbjct: 187 DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYK 246
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M N+ PDE T++ +++A MY KC +
Sbjct: 247 MGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKN 306
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+E A+ + M +K +WT M++G A
Sbjct: 307 IEAAKILFENMTKKTVVSWTTMVIGYA 333
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A Q F +MP R+ + WTA+I G + A++ F EM + +
Sbjct: 427 TALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLV 486
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PDE T + +L+A C G V++ + +M K
Sbjct: 487 PDEITFIGVLSA--CCHGGLVDQGRDYFYQMTSK 518
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 59/191 (30%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV------------------------- 38
+D++SW I++GY+ G D A + +M E + +
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 39 --------------LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM- 83
L A++D Y++ A LF M T+V T +
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKK-------TVVSWTTMVIG 331
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTY 131
Y K G +E A R+ +M KD W A+I G LA+ ++ PD++T
Sbjct: 332 YAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITV 391
Query: 132 VGVLSACTHNG 142
V LSAC+ G
Sbjct: 392 VNCLSACSQLG 402
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/187 (35%), Positives = 103/187 (55%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++++ V+SWT ++ G+ G +D AR+ F +MPERD W A++ GY++ + +EAL+LF
Sbjct: 289 IEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLF 348
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ +++ PDE T+V +LTA MY KC
Sbjct: 349 HEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKC 408
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTI-----RPDEVTYVGVL 135
G++EKA + +++ K+ TWTAMI GLA + F T+ +PDE+T++GVL
Sbjct: 409 GNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEITFIGVL 468
Query: 136 SACTHNG 142
SAC H G
Sbjct: 469 SACCHAG 475
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 78/202 (38%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM--QTSNIRPDEFTI- 75
RG ++ AR+ F + P RD V W +I GY+R EAL LF M + + +RPDE T+
Sbjct: 173 RGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMI 232
Query: 76 ------------------------------VRILTAYM--YCKCGDVEKAQRVLRKMLRK 103
VR++ A M Y KCG +E A+ V ++ +
Sbjct: 233 AAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHR 292
Query: 104 DKFTWTAMIVGLAI----------------SDPFP------------------------- 122
+WT MIVG A D FP
Sbjct: 293 TVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQ 352
Query: 123 --TIRPDEVTYVGVLSACTHNG 142
++ PDE+T V +L+AC+ G
Sbjct: 353 EASVVPDEITMVNLLTACSQLG 374
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A F ++PE++ + WTAMI G EA+ F M +
Sbjct: 399 TSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQK 458
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA------ 116
PDE T + +L+A C G V++ + M L + ++ MI +G A
Sbjct: 459 PDEITFIGVLSA--CCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEA 516
Query: 117 --ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P + PD V + + AC GN
Sbjct: 517 EQLVNTMP-MEPDAVVWGAIFFACRMQGN 544
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/188 (36%), Positives = 99/188 (52%), Gaps = 47/188 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V WT +V+GY+ GQ+D AR F + P RD VLWTAMI+GY++ NRF E + LF
Sbjct: 270 MTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALF 329
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ ++PD+F +V +LT MY KC
Sbjct: 330 GEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKC 389
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGV 134
G +EK+ + + KD +WT++I GLA++ P+ ++PD++T+V V
Sbjct: 390 GCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGK-PSEALELFKAMQTCGLKPDDITFVAV 448
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 449 LSACSHAG 456
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 62/143 (43%), Gaps = 33/143 (23%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT-SNIRPDEFT 74
Y G V+ Q F +MP+RD V W MI GY+R RF EA+ ++ M T SN +P+E T
Sbjct: 153 YAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEAT 212
Query: 75 IVRILTAY--------------------------------MYCKCGDVEKAQRVLRKMLR 102
+V L+A MYCKCG V A+ + M
Sbjct: 213 VVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTV 272
Query: 103 KDKFTWTAMIVGLAISDPFPTIR 125
K+ WT+M+ G I R
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQAR 295
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G ++ + + F + E+D WT++I G + EAL LF MQ
Sbjct: 375 DAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQ 434
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T ++PD+ T V +L+A + G VE+ +++ M
Sbjct: 435 TCGLKPDDITFVAVLSACSH--AGLVEEGRKLFHSM 468
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VI WT ++SGYIN G + AR F + P RD VLWTAMI+GY++ + F +A+ LF
Sbjct: 359 MSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALF 418
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ I+PD+FT+V +LT MY KC
Sbjct: 419 REMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKC 478
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G V+K+ + ++ KD +WT++I GLA++ +PD++T++GVL
Sbjct: 479 GCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVL 538
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 539 SACSHGG 545
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 33/139 (23%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT-SN 67
+ ++ Y V+ A++ F +M RD V W MI GY+R RF +A+ F EMQ N
Sbjct: 235 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 294
Query: 68 IRPDEFTIVRILTAY--------------------------------MYCKCGDVEKAQR 95
+PDE T+V L+A MY KCG + A+
Sbjct: 295 EKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARN 354
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ +M K+ WT+MI G
Sbjct: 355 IFDEMSMKNVICWTSMISG 373
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ Y G VD + + F ++ ++D WT++I G + EAL LF EM+
Sbjct: 464 DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEME 523
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+PD+ T + +L+A + G VE+ +R M
Sbjct: 524 RVGAKPDDITFIGVLSACSH--GGLVEEGRRFFNSM 557
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 46/166 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A + F + + ++ M+ Y + R+ L LF +++ + PD FT +L
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
A MY + +VE A+++ +M +D
Sbjct: 205 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 264
Query: 107 TWTAMIVGLA----ISDPFPTIR---------PDEVTYVGVLSACT 139
+W MI G D T R PDE T V LSACT
Sbjct: 265 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 310
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V WT +VSGY++ G+ D AR+ F + P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 192 MRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 251
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQT+ IRPD F +V +LT MY KC
Sbjct: 252 RCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKC 311
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G +E A V +M +D +WT++I GLA + +R D++T+V VL
Sbjct: 312 GCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVL 371
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 372 TACSHGG 378
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 33/132 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFT 74
Y G+++I + F +MPERD V W +I Y+ RF +A+++F M + SN++ DE T
Sbjct: 75 YAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGT 134
Query: 75 IVRILTAY--------------------------------MYCKCGDVEKAQRVLRKMLR 102
IV L+A M+CKCG ++KA+ + M
Sbjct: 135 IVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRD 194
Query: 103 KDKFTWTAMIVG 114
K+ WT+M+ G
Sbjct: 195 KNVKCWTSMVSG 206
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G ++ A F +M ERD WT++I G AL L+ EM+
Sbjct: 297 DKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEME 356
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDK 105
+R D+ T V +LTA C G V + +R+ M + K
Sbjct: 357 NVGVRLDDITFVAVLTA---CSHGGFVAEGRRIFYSMTERHK 395
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SWT +VSGY GQVD AR F Q E+D ++WTAMI+ Y++ F EAL+LF
Sbjct: 207 MPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEALSLF 266
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ I PD FT+V +LT MY KC
Sbjct: 267 RDMQMHQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMKLDAVLGTALIDMYAKC 326
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VEK+ V +M +D WTA+I GLA + +PD VT++GVL
Sbjct: 327 GHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDSVTFIGVL 386
Query: 136 SACTHNG 142
SAC H G
Sbjct: 387 SACCHGG 393
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 32/153 (20%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G+++ AR+ F +MP+R V+W M+ Y+R R EA+ L EM+
Sbjct: 80 DAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRCGRNTEAVALAEEME 139
Query: 65 TSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVEK 92
+ PD T++ LTA MY K G +E+
Sbjct: 140 RGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVANALLDMYVKNGCLEE 199
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
A + KM ++ +WT ++ G A + R
Sbjct: 200 AVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKAR 232
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G V+ + + F +M RD WTA+I G + AL LF +M+
Sbjct: 312 DAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLATNGQAGRALELFEDME 371
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
S +PD T + +L+A C G V++ ++ R M
Sbjct: 372 RSEAKPDSVTFIGVLSA--CCHGGLVDEGRKQFRAM 405
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 101/187 (54%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VI WT ++SGYIN G + AR F + P RD VLWTAMI+GY++ + F +A+ LF
Sbjct: 405 MSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALF 464
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ ++PD+FT+V +LT MY KC
Sbjct: 465 REMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKC 524
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTI-----RPDEVTYVGVL 135
G V+K+ + ++ KD +WT++I GLA++ F + +PD++T++GVL
Sbjct: 525 GCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVL 584
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 585 SACSHGG 591
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 33/139 (23%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT-SN 67
+ ++ Y V+ A++ F +M RD V W MI GY+R RF +A+ F EMQ N
Sbjct: 281 YNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGN 340
Query: 68 IRPDEFTIVRILTAY--------------------------------MYCKCGDVEKAQR 95
+PDE T+V L+A MY KCG + A+
Sbjct: 341 EKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARN 400
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ +M K+ WT+MI G
Sbjct: 401 IFDEMSMKNVICWTSMISG 419
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ Y G VD + + F ++ ++D WT++I G + EAL LF EM+
Sbjct: 510 DVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEME 569
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+PD+ T + +L+A + G VE+ +R M
Sbjct: 570 RVGAKPDDITFIGVLSACSH--GGLVEEGRRFFNSM 603
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 46/166 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A + F + + ++ M+ Y + R+ L LF +++ + PD FT +L
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
A MY + +VE A+++ +M +D
Sbjct: 251 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSV 310
Query: 107 TWTAMIVGLA----ISDPFPTIR---------PDEVTYVGVLSACT 139
+W MI G D T R PDE T V LSACT
Sbjct: 311 SWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats.
Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K ++SWT ++ GY G +D AR+ F +MPERD W A++ GY++ R +EAL LF
Sbjct: 283 IDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLF 342
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + + PD+ T+V +L+A MY KC
Sbjct: 343 HDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKC 402
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++EKA RV +++ K+ TWTAMI GLA ++PDE+T++GVL
Sbjct: 403 GNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVL 462
Query: 136 SACTHNG 142
SAC H G
Sbjct: 463 SACCHAG 469
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 71/195 (36%), Gaps = 77/195 (39%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIV------- 76
AR+ F RD V W +I GY+R REAL +F M + PDE T++
Sbjct: 174 ARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSA 233
Query: 77 --------RILTAY------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
R L Y MY KCGD+E+A+ V + +K +WT
Sbjct: 234 QLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTT 293
Query: 111 MIVGLAI----------------SDPFP---------------------------TIRPD 127
MIVG A D FP + PD
Sbjct: 294 MIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPD 353
Query: 128 EVTYVGVLSACTHNG 142
++T V +LSAC+ G
Sbjct: 354 DITMVNLLSACSQLG 368
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T++V Y G ++ A + F ++PE++ + WTAMI G A+ F M ++
Sbjct: 393 TNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA------ 116
PDE T + +L+A C G V++ Q M+ K ++ ++G A
Sbjct: 453 PDEITFIGVLSA--CCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEA 510
Query: 117 --ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ + P + PD V + + AC +GN T
Sbjct: 511 EHLVNTMP-MEPDAVVWGALFFACRMHGNITL 541
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++ISWT +VSGY GQ+D AR F Q E+D ++WTAMI+ ++ F EAL+LF
Sbjct: 207 MPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHGCFEEALSLF 266
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + PD FTIV +LT MY KC
Sbjct: 267 REMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRKMKVDAVLGTALIDMYAKC 326
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G V+K+ V +M +D WT++I GLA + ++PD +T++GVL
Sbjct: 327 GHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDMERSKVKPDSITFIGVL 386
Query: 136 SACTHNG 142
SAC H G
Sbjct: 387 SACCHGG 393
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 40/178 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G+ D+AR+ F +MP R V+W MI Y+R R+ A+ L EM+
Sbjct: 80 DAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAEEME 139
Query: 65 TSNIRPDEFTIV---------------RILTAY-----------------MYCKCGDVEK 92
S + PD+ T+V R + AY MY K G +E+
Sbjct: 140 RSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLPVANALLDMYMKNGCLEE 199
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
A ++ +M ++ +WT ++ G A + R D + + +++AC +G
Sbjct: 200 AVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQCSEKDLIMWTAMINACVQHG 257
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G V + + F QM RD WT++I G + AL LF +M+
Sbjct: 312 DAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFEDME 371
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
S ++PD T + +L+A C G V++ ++ M R + ++ ++G A
Sbjct: 372 RSKVKPDSITFIGVLSA--CCHGGLVDEGRKQFHAMKDVYRIPPRIEHYSCLVNLLGRAG 429
Query: 117 -ISDPFPTIRPDEVT------YVGVLSACTHNGN 143
+ + IR ++ + +L+AC GN
Sbjct: 430 LLDEAEKLIRDIQINKDAMPLFGALLTACKAQGN 463
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ + ++SWT ++SGY G +D++R+ F M E+D VLW AMI G ++ R ++AL LF
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQTSN +PDE T++ L+A MY KC
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++ +A V + ++ T+TA+I GLA+ T I PDE+T++G+L
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Query: 136 SACTHNG 142
SAC H G
Sbjct: 498 SACCHGG 504
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ AR+ F + P RD V W +I+GY ++ +A+ ++ M++ ++PD+ T++ ++
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
++ M+ KCGD+ +A+R+ + ++
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 107 TWTAMIVGLA 116
+WT MI G A
Sbjct: 325 SWTTMISGYA 334
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 48/152 (31%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNI---RPDEFTI--------------------- 75
W I G+ +E+ L+ +M RPD FT
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 76 ------------VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-AISDPFP 122
V + +M+ CGD+E A++V + +D +W +I G I +
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 123 TI-----------RPDEVTYVGVLSACTHNGN 143
I +PD+VT +G++S+C+ G+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGD 272
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 96/185 (51%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+DV++WT +++GY GQV +ARQ F +MPE++ V W+AMI GY ++ FREAL LF +
Sbjct: 176 NRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFND 235
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + RP+ IV LTA MY KCG
Sbjct: 236 MQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGC 295
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
VE A RV +ML +D F +T++I GLA T + P+EVT++ +LSA
Sbjct: 296 VETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSA 355
Query: 138 CTHNG 142
C+ G
Sbjct: 356 CSRVG 360
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D I T ++ Y G V+ A + F +M +RD +T++I G A+ +F MQ
Sbjct: 279 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 338
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ P+E T + +L+A + G VE+ R+ + M
Sbjct: 339 NEGVCPNEVTFICLLSA--CSRVGLVEEGLRIFKSM 372
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V WT +V GY++ G++D AR F + P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQT+ IRPD F +V +LT MY KC
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G +E A V ++ +D +WT++I GLA++ +R D +T+V VL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387
Query: 136 SACTHNG 142
+AC H G
Sbjct: 388 TACNHGG 394
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 33/132 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFT 74
Y + G+++I + F +MP+RD V W +I Y+ RF +A+ +F M Q SN++ DE T
Sbjct: 91 YASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGT 150
Query: 75 IVRILTAY--------------------------------MYCKCGDVEKAQRVLRKMLR 102
IV L+A M+CKCG ++KA+ V M
Sbjct: 151 IVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRD 210
Query: 103 KDKFTWTAMIVG 114
K+ WT+M+ G
Sbjct: 211 KNVKCWTSMVFG 222
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G ++ A + F ++ ERD WT++I G AL L+ EM+
Sbjct: 313 DKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEME 372
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRK 103
+R D T V +LTA C G V + +++ M +
Sbjct: 373 NVGVRLDAITFVAVLTA---CNHGGFVAEGRKIFHSMTER 409
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 96/185 (51%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+DV++WT +++GY GQV +ARQ F +MPE++ V W+AMI GY ++ FREAL LF +
Sbjct: 151 NRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFND 210
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + RP+ IV LTA MY KCG
Sbjct: 211 MQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGC 270
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
VE A RV +ML +D F +T++I GLA T + P+EVT++ +LSA
Sbjct: 271 VETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSA 330
Query: 138 CTHNG 142
C+ G
Sbjct: 331 CSRVG 335
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D I T ++ Y G V+ A + F +M +RD +T++I G A+ +F MQ
Sbjct: 254 DRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQ 313
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ P+E T + +L+A + G VE+ R+ + M
Sbjct: 314 NEGVCPNEVTFICLLSA--CSRVGLVEEGLRIFKSM 347
>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
Length = 530
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VSGY GQ+D AR F Q E+D +LWTAMI+ ++ F EALTLF
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + PD FT+V +LT MY KC
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKC 329
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G +EK+ V +M +D WTA+I GLA + ++PD VT++GVL
Sbjct: 330 GHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVL 389
Query: 136 SACTHNG 142
SAC H G
Sbjct: 390 SACCHGG 396
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 40/178 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G+VDIAR+ F +MP R VLW M+ Y+R + A+ L +M+
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVALSEQME 142
Query: 65 TSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVEK 92
S + PD T+V +TA MY K +E+
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEE 202
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
A ++ +M ++ +WT ++ G ++ R D + + +++AC +G
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHG 260
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G ++ + + F +M RD WTA+I G + AL LF +MQ
Sbjct: 315 DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQ 374
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
S ++PD T + +L+A C G V++ ++ M R + ++ ++G A
Sbjct: 375 RSKVKPDGVTFIGVLSA--CCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAG 432
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
I D P + + +L+AC +GN
Sbjct: 433 LLDEAERLIGD-VPINKDAMPLFGALLTACKAHGN 466
>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
Length = 530
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VSGY GQ+D AR F Q E+D +LWTAMI+ ++ F EALTLF
Sbjct: 210 MPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHGCFEEALTLF 269
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + PD FT+V +LT MY KC
Sbjct: 270 RDMQMQRVEPDRFTVVTLLTCCANLGALDQGEWIHQYAEQRKMKIDAVLGTALIDMYSKC 329
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G +EK+ V +M +D WTA+I GLA + ++PD VT++GVL
Sbjct: 330 GHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQRSKVKPDGVTFIGVL 389
Query: 136 SACTHNG 142
SAC H G
Sbjct: 390 SACCHGG 396
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 40/178 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G+VDIAR+ F +MP R VLW M+ Y+R R+ A+ L +M+
Sbjct: 83 DAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVALSEQME 142
Query: 65 TSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVEK 92
S + PD T+V +TA MY K +E+
Sbjct: 143 RSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVANALLDMYTKNDCLEE 202
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
A ++ +M ++ +WT ++ G ++ R D + + +++AC +G
Sbjct: 203 AVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQCKEKDLILWTAMINACVQHG 260
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G ++ + + F +M RD WTA+I G + AL LF +MQ
Sbjct: 315 DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLATNGQAGRALELFQDMQ 374
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
S ++PD T + +L+A C G V++ ++ M R + ++ ++G A
Sbjct: 375 RSKVKPDGVTFIGVLSA--CCHGGLVDEGRKQFHAMREVYQIEPRVEHYSCLVNLLGRAG 432
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
I D P + + +L+AC +GN
Sbjct: 433 LLDEAERLIGD-VPINKDAMPLFGALLTACKAHGN 466
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 93/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V WT +V+GY+ GQ+D AR F + P RD VLWTAMI+GY++ N F +A+ LF EM
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEM 332
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
Q + PD+F +V +LT MY KCG +
Sbjct: 333 QIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCI 392
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
EK+ + + D +WT++I GLA++ ++PD++T+V VLSAC
Sbjct: 393 EKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSAC 452
Query: 139 THNG 142
H G
Sbjct: 453 GHAG 456
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 63/143 (44%), Gaps = 33/143 (23%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ-TSNIRPDEFT 74
Y G V+ Q F +MPERD V W MI GY+R RF EA+ ++ MQ SN +P+E T
Sbjct: 153 YAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEAT 212
Query: 75 IVRILTAY--------------------------------MYCKCGDVEKAQRVLRKMLR 102
+V L+A MYCKCG V A+ + M+
Sbjct: 213 VVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIV 272
Query: 103 KDKFTWTAMIVGLAISDPFPTIR 125
K+ WT+M+ G I R
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQAR 295
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G ++ + + F + + D WT++I G + EAL LF MQ
Sbjct: 375 DAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQ 434
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T ++PD+ T V +L+A + G VE+ +++ M
Sbjct: 435 TCGLKPDDITFVAVLSACGH--AGLVEEGRKLFHSM 468
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 46/184 (25%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+++D+++ S + G + A + F + ++ MI +++ R A++LF
Sbjct: 38 QDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQ 97
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+++ + PD +T +L MY + G
Sbjct: 98 QLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELG 157
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI-------------RPDEVTYVGVL 135
VE +V +M +D +W MI G F +P+E T V L
Sbjct: 158 LVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTL 217
Query: 136 SACT 139
SAC
Sbjct: 218 SACA 221
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVS-GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ +DV +W ++ Y G V+ AR+ F MPER+ V WT+MI GY +V +F++A+ L
Sbjct: 259 MRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKL 318
Query: 60 FPEMQTSNIRPDEFTIVRILT---------------AY------------------MYCK 86
F +MQ S ++ D+ TI +++ AY MY K
Sbjct: 319 FRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSK 378
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT------IRPDEVTYVG 133
CGD++KA + R ++++D F+WT MI+G A++ D F + P+E+T++G
Sbjct: 379 CGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLG 438
Query: 134 VLSACTHNG 142
VL++C+H G
Sbjct: 439 VLTSCSHGG 447
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 49/183 (26%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER---------------------------- 35
KD + +++ Y+ G+V++A + F MPER
Sbjct: 168 KDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMA 227
Query: 36 ----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91
+ VL TAMI G+ + +A ++F M+ ++ ++ MY KCG VE
Sbjct: 228 NGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDV-----ATWNVMIGVMYAKCGLVE 282
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
A++V M ++ WT+MI G F ++ D+ T V+S+C
Sbjct: 283 DARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCG 342
Query: 140 HNG 142
G
Sbjct: 343 QMG 345
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 84/151 (55%), Gaps = 45/151 (29%)
Query: 24 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY- 82
+ R YF +MPERD+V WTAMIDGYL+VNRF+E L+LF EMQ +NI+PDEFT+V ILTA
Sbjct: 242 VHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACA 301
Query: 83 --------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY CG+VEKA R+ M +DK +WTA
Sbjct: 302 HLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTA 361
Query: 111 MIVGLAIS-------DPF-----PTIRPDEV 129
+I GLAI+ D F +I PDEV
Sbjct: 362 VIFGLAINGYGEEALDMFSQMLKASITPDEV 392
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 76/156 (48%), Gaps = 18/156 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ +V ++ Y G+V +AR F + + D V W MI GY R +F E++ LF E
Sbjct: 151 SSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDE 210
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR----KMLRKDKFTWTAMIVGLAIS 118
M+ + P T+V +L+A K D+ +RV R KM +D +WTAMI G
Sbjct: 211 MERMRVLPSSITLVSVLSA--CSKLKDLNVGKRVHRNYFDKMPERDFVSWTAMIDGYLQV 268
Query: 119 DPF------------PTIRPDEVTYVGVLSACTHNG 142
+ F I+PDE T V +L+AC H G
Sbjct: 269 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLG 304
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 63/165 (38%), Gaps = 45/165 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT----- 74
G ++ AR F MP ++ +W MI GY RV A++++ EM + PDE+T
Sbjct: 67 GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126
Query: 75 ----------------------------IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
V+ ++Y G+V A+ V + + D
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186
Query: 107 TWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
TW MI G S F + P +T V VLSAC+
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRP 70
++ Y N G V+ A + F MP RD + WTA+I G L +N + EAL +F +M ++I P
Sbjct: 331 LIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFG-LAINGYGEEALDMFSQMLKASITP 389
Query: 71 DE 72
DE
Sbjct: 390 DE 391
>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
Length = 529
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VSGY GQ+D AR F Q ++D +LWTAMI+ ++ F EALTLF
Sbjct: 207 MPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGSFEEALTLF 266
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+MQ + PD+FT+V +LT MY KC
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAEGRNMKIDAVLGTALIEMYSKC 326
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G V+K+ ++ +M +D WTA+I GLA + +PD +T++GVL
Sbjct: 327 GHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVL 386
Query: 136 SACTHNG 142
+AC H G
Sbjct: 387 NACCHGG 393
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 40/179 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G+VD AR+ F +MP+R VLW M+ Y+R RF A+ L EM+
Sbjct: 80 DAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAEEME 139
Query: 65 TSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVEK 92
S PD T+V +TA MY K G +E+
Sbjct: 140 RSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFGFSLPVANALLDMYTKNGYLEE 199
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNGN 143
A ++ ++M ++ +WT ++ G A++ R D + + +++AC +G+
Sbjct: 200 AVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLFYQCTQKDLILWTAMINACVQHGS 258
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G VD + Q F +M RD WTA+I G + +AL LF EMQ
Sbjct: 312 DAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
S +PD T + +L A C G V++ +R + M
Sbjct: 372 RSKTKPDGITFIGVLNA--CCHGGLVDEGRRHFQAM 405
>gi|255584793|ref|XP_002533114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527077|gb|EEF29259.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 94/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+++W I++ Y+ RG++ AR+ F ++P RD V W AMI G++ +AL +F
Sbjct: 205 MPVKDLVAWNVIITAYVKRGEMACARKLFNEVPRRDVVTWNAMIAGFVHCGENEQALEMF 264
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
EM + +PDE T++ +L+A YMY K
Sbjct: 265 EEMISVGEQPDEVTMLSLLSACTDLGDLEVGKKVHSSILEMSLGDLSVLLGNALTYMYAK 324
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------------FPTIRPDEVTYVG 133
CG +E+A V R M KD TW ++IVGLA+ I+P+E+T+VG
Sbjct: 325 CGSIERALEVFRGMREKDVTTWNSVIVGLALHGHAEESIHLFREMQRLNNIKPNEITFVG 384
Query: 134 VLSACTHNG 142
VL AC+H G
Sbjct: 385 VLVACSHAG 393
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +D A Q F Q+ E D +W M+ G + +A++L+ +M+ I+PD+FT +L
Sbjct: 61 GTIDYAHQLFDQVAEPDIFMWNTMMRGSSQSPSPIKAVSLYTQMENCGIKPDKFTFSFLL 120
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A Y + KCGD+ A+ + ++D
Sbjct: 121 KACTRLEWRNMGFCIHGKALKHGFQENTFVRNTLVYYHAKCGDLGIAREMFDDSAKRDVV 180
Query: 107 TWTAMIVGLA 116
W+A+ G A
Sbjct: 181 AWSALTAGYA 190
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 119 bits (297), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VSGY GQ+D AR +F Q ++D +LWT+MI+ ++ F EAL LF
Sbjct: 207 MPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALILF 266
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+MQ + PD+FT+V +LT MY KC
Sbjct: 267 RDMQLQRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMKIDAVLGTALIEMYSKC 326
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G V+K+ ++ +M KD WTA+I GLA + +PD +T++GVL
Sbjct: 327 GHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGITFIGVL 386
Query: 136 SACTHNG 142
SAC H G
Sbjct: 387 SACCHGG 393
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 40/179 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + ++ Y G+ D AR+ F +MP+R VLW M+ Y+R RF A+ L +M+
Sbjct: 80 DAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRCGRFTAAVALAVQME 139
Query: 65 TSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVEK 92
+ PD T+V +TA MY K G +E+
Sbjct: 140 SGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSLPVANALLDMYTKNGYLEE 199
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNGN 143
A ++ +M ++ +WT ++ G I+ R D + + +++AC +G+
Sbjct: 200 AVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGS 258
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G VD + Q F +M +D WTA+I G + +AL LF EMQ
Sbjct: 312 DAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLATNGQASKALELFEEMQ 371
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
S +PD T + +L+A C G V++ QR + M R + ++ ++G A
Sbjct: 372 RSKTKPDGITFIGVLSA--CCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAG 429
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
I+D P + +L+AC NGN
Sbjct: 430 LLYEAEKLITD-MPVNNDTMPLFGALLTACKANGN 463
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K V+SWT ++ GY G +D+A + F MPE++ V W AMI ++ N EAL LF
Sbjct: 316 MRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELF 375
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ SN++PD+ T++ L+A MY KC
Sbjct: 376 REMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKC 435
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVL 135
G++ KA +V +M R++ TWTA+I GLA ++D + PDE+T++GVL
Sbjct: 436 GNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVL 495
Query: 136 SACTHNG 142
+AC H G
Sbjct: 496 TACCHGG 502
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ + I+ ++ G+ +A + F + RD V W ++I+GY+R + REA+ ++ +
Sbjct: 186 DKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQ 245
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M T +++PDE T++ +++A MY KCGD
Sbjct: 246 MITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGD 305
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+E + + M +K +WT MIVG A
Sbjct: 306 LEAGKVLFDNMRKKTVVSWTTMIVGYA 332
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T ++ Y G + A Q F +MP R+ + WTA+I G +A+ F +M
Sbjct: 421 DVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMI 480
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT 109
S + PDE T + +LTA C G VE+ ++ +M K +F +
Sbjct: 481 DSGLMPDEITFLGVLTA--CCHGGLVEEGRKYFDQM--KSRFNLS 521
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 118 bits (295), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 100/195 (51%), Gaps = 47/195 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DVI+WT +++GY+ G V+ AR+ F QMPER+ V W+AMI GY+ + FREAL LF ++
Sbjct: 172 RDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDL 231
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q + +RP+ IV LTA MY KCG +
Sbjct: 232 QLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCI 291
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSAC 138
E A V KM KD F +T++I GLA +D + P+EVT++ VLSAC
Sbjct: 292 EIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSAC 351
Query: 139 THNG--NETFVINSC 151
+ G +E I +C
Sbjct: 352 SRMGLVDEGLRIFNC 366
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G ++IA F +MP++D +T++I G + +A+ LF MQ
Sbjct: 274 DRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQ 333
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ + P+E T + +L+A + G V++ R+ M
Sbjct: 334 SEKVIPNEVTFICVLSA--CSRMGLVDEGLRIFNCM 367
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++++SW +V G+ G + AR+ F MP+RD + WT+MI GY + ++F +A+ LF
Sbjct: 278 MRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLF 337
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + ++PD+ T+ +L+A MYCKC
Sbjct: 338 QEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKC 397
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G VEKA V +M KD +WT++I GLA++ D F ++P T+VG+L
Sbjct: 398 GMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGIL 457
Query: 136 SACTHNG 142
AC H G
Sbjct: 458 LACAHAG 464
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/207 (24%), Positives = 77/207 (37%), Gaps = 76/207 (36%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y GQ+ A++ F M +RD V W +I GY + N+++E L LF M +NI+ D
Sbjct: 157 LIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKAD 216
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
T+V+I+ A MY + E AQ V
Sbjct: 217 AVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFD 276
Query: 99 KMLRK-------------------------------DKFTWTAMIVGLAISDPF------ 121
+M + D +WT+MI G + + F
Sbjct: 277 RMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKL 336
Query: 122 ------PTIRPDEVTYVGVLSACTHNG 142
++PD+VT VLSAC H G
Sbjct: 337 FQEMMAAKVKPDKVTVASVLSACAHLG 363
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 46/183 (25%)
Query: 10 TDIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+D++ Y ++ + A F Q+ V+W MI G + + EA+ ++ M I
Sbjct: 53 SDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGI 112
Query: 69 RPDEFTIVRILTA---------------------------------YMYCKCGDVEKAQR 95
+ T++ + A +MY CG + AQ+
Sbjct: 113 TGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQK 172
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+ ML +D +W +I G + + + I+ D VT V ++ AC+H G+
Sbjct: 173 MFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGD 232
Query: 144 ETF 146
F
Sbjct: 233 WEF 235
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 98/187 (52%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ NK V+SWT ++ G+ G ++ AR F +MPERD W A++ GY++ + +EA+ LF
Sbjct: 285 IDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + P+E T+V +L+A MY KC
Sbjct: 345 HEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKC 404
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPT-----IRPDEVTYVGVL 135
G+++KA + +++ K+ TWTAMI GLA + F ++PDE+T++GVL
Sbjct: 405 GNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 136 SACTHNG 142
SAC H G
Sbjct: 465 SACCHAG 471
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 55/201 (27%), Positives = 76/201 (37%), Gaps = 78/201 (38%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM--QTSNIRPDEFTI-- 75
G + +AR+ F + P RD V W +I GY+R REAL LF + +RPDE T+
Sbjct: 170 GSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIG 229
Query: 76 -----------------------------VRILTAYM--YCKCGDVEKAQRVLRKMLRKD 104
VR++ A M Y KCG +E A+ V ++ K
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKT 289
Query: 105 KFTWTAMIVGLAI----------------SDPFP-------------------------- 122
+WT MIVG A D FP
Sbjct: 290 VVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQE 349
Query: 123 -TIRPDEVTYVGVLSACTHNG 142
+ P+E+T V +LSAC+ G
Sbjct: 350 SKVDPNEITMVNLLSACSQLG 370
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 18/152 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A F ++P+++ + WTAMI G EA+ F M ++
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA------ 116
PDE T + +L+A C G V++ ++ M L + ++ MI +G A
Sbjct: 455 PDEITFIGVLSA--CCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEA 512
Query: 117 --ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ + P + PD V + + AC +GN T
Sbjct: 513 EQLVNTMP-MDPDAVVWGALFFACRMHGNITL 543
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ G+ + G V A++ F + ERD + W++MI Y + + EAL LF
Sbjct: 197 MPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ +N+ PD+ T+V +L+A MY KC
Sbjct: 257 HEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
GD++ + RV M +D F W+AMI+GLA D F I+P++VT++GVL
Sbjct: 317 GDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVL 376
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 377 SACSHIG 383
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYM 83
AR F ++P D +W MI YL +E+++LF +M+ P D +++ ++ A
Sbjct: 57 ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116
Query: 84 YCK-CGDVEKAQ-RVLRKMLRKDKFTWTAMI 112
K G+ +K +VL+ L D F TA+I
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALI 147
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV W +V+GY G VD AR F +MPER+ + WTA+I GY +++R EA+T+F M
Sbjct: 203 RDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM 262
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q + PDE ++ L+A MY KCG +
Sbjct: 263 QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKI 322
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSAC 138
EKA V + M K TWT+MI GLA+ + F I+P+E+T+V +LSAC
Sbjct: 323 EKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSAC 382
Query: 139 THNG 142
H G
Sbjct: 383 CHVG 386
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A + F M + + WT+MIDG REAL +F M+ + I+P+
Sbjct: 312 LIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
E T V IL+A C G VE + + M
Sbjct: 372 EITFVAILSA--CCHVGLVEMGRWYFKCM 398
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 91/184 (49%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV W +V+GY G VD AR F +MPER+ + WTA+I GY +++R EA+T+F M
Sbjct: 203 RDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRM 262
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q + PDE ++ L+A MY KCG +
Sbjct: 263 QLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKI 322
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSAC 138
EKA V + M K TWT+MI GLA+ + F I+P+E+T+V +LSAC
Sbjct: 323 EKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSAC 382
Query: 139 THNG 142
H G
Sbjct: 383 CHVG 386
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A + F M + + WT+MIDG REAL +F M+ + I+P+
Sbjct: 312 LIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
E T V IL+A C G VE + + M
Sbjct: 372 EITFVAILSA--CCHVGLVEMGRWYFKCM 398
>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ GY N +D AR+ F MPER+ V W MI GY + + +EA+ LF
Sbjct: 202 MTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLF 261
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
EMQ T+++ PD+ TI+ +L A MY K
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSK 321
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGVL 135
CG++EKA+R+ +M K +W AMI G A++ D F T+ +PDE+T + V+
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEEKPDEITMLAVI 381
Query: 136 SACTHNG 142
SAC H G
Sbjct: 382 SACNHGG 388
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M + +SWT ++ GY+ G++D+A + F QMP+ +D V++ AM+DG+++ A L
Sbjct: 139 MPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS- 118
F EM + I + YC D++ A+++ M ++ +W MI G +
Sbjct: 199 FDEMTHKTV------ITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNK 252
Query: 119 DPFPTIR------------PDEVTYVGVLSACTHNG 142
P IR PD+VT + VL A + G
Sbjct: 253 QPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTG 288
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y G++ AR F +MP+R V WTA+I GY+R A LF +M
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMP 171
Query: 65 TSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
+ V I A M + K GD+ A+R+ +M K TWT MI G S+
Sbjct: 172 -------QVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDID 224
Query: 123 TIR 125
+ R
Sbjct: 225 SAR 227
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 92/188 (48%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SWT V+G + G++D AR F +MP R+ V WTAMI+GY++ R +EA LF
Sbjct: 191 MAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELF 250
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +N+RP+ FT+V +L A MY KC
Sbjct: 251 QRMQLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKC 310
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E A++V +M +K TW +MI L + +RPD +T+VGVL
Sbjct: 311 GSIEDAKKVFEEMQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVL 370
Query: 136 SACTHNGN 143
AC + N
Sbjct: 371 FACVNTNN 378
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 54/152 (35%), Gaps = 49/152 (32%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ++ Y G +D AR+ F +M R V WT + G +
Sbjct: 163 KDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWTTFVAGLV--------------- 207
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD---- 119
CG+++ A+ +M ++ +WTAMI G +
Sbjct: 208 ----------------------ACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQE 245
Query: 120 --------PFPTIRPDEVTYVGVLSACTHNGN 143
+RP+ T VG+L ACT G+
Sbjct: 246 AFELFQRMQLANVRPNGFTLVGLLRACTELGS 277
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ISW ++SGY+ VD A+ F MPE+D V W++MI GY + + F E L LF EMQ
Sbjct: 306 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 365
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S +PDE T+V +++A MY KCG VE
Sbjct: 366 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 425
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACT 139
A V M+ K TW A+I+GLA++ D F ++ P+E+T++GVL AC
Sbjct: 426 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 485
Query: 140 HNG 142
H G
Sbjct: 486 HMG 488
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 80/242 (33%), Gaps = 107/242 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++GYI G V+ A+ + QMPER
Sbjct: 143 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML 202
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D V W+A+I + + + EA+ F M + DE V L+A
Sbjct: 203 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKL 262
Query: 82 ---------------------YMYCKCGD------------------------------- 89
YMY KCGD
Sbjct: 263 IHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNL 322
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
V+ A+ + M KD +W++MI G A +D F +PDE T V V+SA
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382
Query: 138 CT 139
C
Sbjct: 383 CA 384
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T ++ Y+ G V+ A + F M E+ W A+I G +L +F M+
Sbjct: 407 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 466
Query: 65 TSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAIS 118
++ P+E T + +L A C+ G V++ Q M+ K + M+ L +
Sbjct: 467 KCHVTPNEITFMGVLGA---CRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRA 523
Query: 119 DPFPT---------IRPDEVTYVGVLSACTHNGN 143
+ PD T+ +L AC +G+
Sbjct: 524 GKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 557
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/190 (34%), Positives = 96/190 (50%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY RG+V +AR+ F +RD W++MI Y + R +EAL L+
Sbjct: 49 MPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELW 108
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM ++I PD T+V +++A MY KC
Sbjct: 109 REMHAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKC 168
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
GD+E AQRV +M KD TW++MI+GLA IS+ ++P+ VT+V
Sbjct: 169 GDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISE---GMKPNGVTFV 225
Query: 133 GVLSACTHNG 142
GVL ACTH G
Sbjct: 226 GVLIACTHVG 235
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 96/185 (51%), Gaps = 43/185 (23%)
Query: 1 MKNKDVIS-WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +IS W ++SG+ G V++AR++F +M ERD + W+AMIDGY++ F EAL +
Sbjct: 230 MPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEI 289
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F +MQ IRP +F + +L+A MY K
Sbjct: 290 FHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAK 349
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSA 137
CG ++ A V KM K+ +W AMI GLA+ D F I P+E+T+VGVL+A
Sbjct: 350 CGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNA 409
Query: 138 CTHNG 142
C H G
Sbjct: 410 CAHGG 414
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM--YCKCGDVE 91
E D V W AMIDGYLR A LF M PD +++ A + + +CG VE
Sbjct: 201 EVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDR-SMISTWNAMISGFSRCGMVE 253
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACT 139
A+ +M +D+ +W+AMI G F IRP + VLSAC
Sbjct: 254 VAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACA 313
Query: 140 HNG 142
+ G
Sbjct: 314 NLG 316
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G++D+A + F +M ++ W AMI G R +A+ LF +M
Sbjct: 336 DGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM- 394
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
+I P+E T V +L A + G V+K + M ++ + + ++G A
Sbjct: 395 --DINPNEITFVGVLNACAH--GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 450
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ PT P + +L AC +GN
Sbjct: 451 LLTEAEKVVSSIPT-EPTPAVWGALLGACRKHGN 483
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ISW ++SGY+ VD A+ F MPE+D V W++MI GY + + F E L LF EMQ
Sbjct: 441 DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQ 500
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S +PDE T+V +++A MY KCG VE
Sbjct: 501 MSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVE 560
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACT 139
A V M+ K TW A+I+GLA++ D F ++ P+E+T++GVL AC
Sbjct: 561 TALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACR 620
Query: 140 HNG 142
H G
Sbjct: 621 HMG 623
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/242 (23%), Positives = 80/242 (33%), Gaps = 107/242 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++GYI G V+ A+ + QMPER
Sbjct: 278 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML 337
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D V W+A+I + + + EA+ F M + DE V L+A
Sbjct: 338 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKL 397
Query: 82 ---------------------YMYCKCGD------------------------------- 89
YMY KCGD
Sbjct: 398 IHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNL 457
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
V+ A+ + M KD +W++MI G A +D F +PDE T V V+SA
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517
Query: 138 CT 139
C
Sbjct: 518 CA 519
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 18/154 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T ++ Y+ G V+ A + F M E+ W A+I G +L +F M+
Sbjct: 542 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 601
Query: 65 TSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAIS 118
++ P+E T + +L A C+ G V++ Q M+ K + M+ L +
Sbjct: 602 KCHVTPNEITFMGVLGA---CRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRA 658
Query: 119 DPFPT---------IRPDEVTYVGVLSACTHNGN 143
+ PD T+ +L AC +G+
Sbjct: 659 GKLQEAEELLNRMPMTPDVATWGALLGACKKHGD 692
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats.
Identities = 62/183 (33%), Positives = 91/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+++W ++ G G+VD +R+ F +MP R+ V W +MI GY+R R REAL LF +MQ
Sbjct: 190 DIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQ 249
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+P EFT+V +L A MYCKCG +
Sbjct: 250 EERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIG 309
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
+A +V K +W MI+GLA++ +RPD+VT+VGVL+AC
Sbjct: 310 EAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACN 369
Query: 140 HNG 142
++G
Sbjct: 370 YSG 372
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI I+ Y G + A Q F P + W MI G EA+ LF ++
Sbjct: 291 NVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLE 350
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLA--- 116
SN+RPD+ T V +LTA Y G V+KA+ M + K ++ M+ L
Sbjct: 351 CSNLRPDDVTFVGVLTACNY--SGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAG 408
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
+ + IR PD + + +LSAC +GN
Sbjct: 409 LLEEAEELIRNMPVNPDAIIWSSLLSACRKHGN 441
>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats.
Identities = 62/164 (37%), Positives = 89/164 (54%), Gaps = 22/164 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SWT ++ GY G+ D A+ F MP +D W A+I Y + + +EAL LF
Sbjct: 260 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 319
Query: 61 PEMQTSNI-RPDEFTI-------VRILTAY--MYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
E+Q S +PDE T+ + T+ MYCKCGD++KA V + RKD F W+A
Sbjct: 320 HELQLSKTAKPDEVTLKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSA 379
Query: 111 MIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
MI GLA+ D ++P+ VT+ +L AC+H G
Sbjct: 380 MIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVG 423
Score = 76.3 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 5/112 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y G++ + + F +P RD V W +MI +++ EAL LF EM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
T N T+ + MY KCG VE A+R+ KM KD +WT M+VG A
Sbjct: 230 TQN----SLTLSNAMLD-MYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 276
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 96/185 (51%), Gaps = 43/185 (23%)
Query: 1 MKNKDVIS-WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +IS W ++SG+ G V++AR++F +M ERD + W+AMIDGY++ F EAL +
Sbjct: 231 MPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEI 290
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F +MQ IRP +F + +L+A MY K
Sbjct: 291 FHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAK 350
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSA 137
CG ++ A V KM K+ +W AMI GLA+ D F I P+E+T+VGVL+A
Sbjct: 351 CGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNA 410
Query: 138 CTHNG 142
C H G
Sbjct: 411 CAHGG 415
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM--YCKCGDVE 91
E D V W AMIDGYLR A LF M PD +++ A + + +CG VE
Sbjct: 202 EVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDR-SMISTWNAMISGFSRCGMVE 254
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACT 139
A+ +M +D+ +W+AMI G F IRP + VLSAC
Sbjct: 255 VAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACA 314
Query: 140 HNG 142
+ G
Sbjct: 315 NLG 317
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G++D+A + F +M ++ W AMI G R +A+ LF +M
Sbjct: 337 DGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM- 395
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
+I P+E T V +L A + G V+K + M ++ + + ++G A
Sbjct: 396 --DIYPNEITFVGVLNACAH--GGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 451
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ PT P + +L AC +GN
Sbjct: 452 LLTEAEKVVSSIPT-EPTPAVWGALLGACRKHGN 484
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+++SW +++GY G + A++ F +MP R+ + WT MI G + N+ +AL LF
Sbjct: 319 MQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLF 378
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM +N++PDE T+ +L+A MYCKC
Sbjct: 379 QEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKC 438
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVL 135
G V+KA V M +KD +WT+MI+GLA++ + +P +++G+L
Sbjct: 439 GVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGIL 498
Query: 136 SACTHNG 142
ACTH G
Sbjct: 499 LACTHAG 505
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 78/204 (38%)
Query: 15 GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74
GY G++ A++ F +M +RD V W ++I GY + NRF+E L LF M+ +N+ D T
Sbjct: 203 GYF--GELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVT 260
Query: 75 IVRILTAY---------------------------------MYCKCGDVEKAQRVLRKML 101
+V+++ A MY + G V+ A+RV +M
Sbjct: 261 MVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQ 320
Query: 102 RKDKFTWTAMIVGLAISDPF---------------------------------------- 121
K+ +W AM+ G A +
Sbjct: 321 EKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQE 380
Query: 122 ---PTIRPDEVTYVGVLSACTHNG 142
++PDE+T VLSAC+H G
Sbjct: 381 MMDANVKPDEITVSSVLSACSHLG 404
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 90/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW+ +V ++ G++++ARQ F MPE+D V WTAM+ GY + N REAL LF EM
Sbjct: 187 DVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMS 246
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+ IRPDE TIV +++A MY KCG V+
Sbjct: 247 DAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVD 306
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSACT 139
+A RV M RK TW +MI A D F I PD +T++ +L A T
Sbjct: 307 RAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYT 366
Query: 140 HNG 142
H G
Sbjct: 367 HKG 369
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G VD A + F M + + W +MI +A LF M S I PD
Sbjct: 295 LINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPD 354
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T + +L AY + G V++ R+ + M R
Sbjct: 355 GITFLALLIAYTH--KGLVDEGYRLFQIMER 383
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A++ F QMP+ + + +I GY + + + LF +M+ +++ PDEFT ++
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLI 123
Query: 80 TA 81
A
Sbjct: 124 KA 125
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++++SW ++ GY G + AR+ F MP RD + WT+MI Y + +F +A+ LF
Sbjct: 957 MRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLF 1016
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + ++PDE T+ +L+A MYCKC
Sbjct: 1017 QEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKC 1076
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G VEK V +M ++D +WT++I GLA++ + +RP T+VGVL
Sbjct: 1077 GAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVL 1136
Query: 136 SACTHNG 142
AC H G
Sbjct: 1137 LACAHAG 1143
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 84/216 (38%), Gaps = 76/216 (35%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ ++ GY ++ AR+ F +M ERD V W ++I GY R R+ E L +F E
Sbjct: 827 DSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEE 886
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ ++++ D T+V+++ A MY +
Sbjct: 887 MRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSM 946
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFP----------------- 122
V+ A+RV +M ++ +W AMI+G + D P
Sbjct: 947 VDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQA 1006
Query: 123 ----------------TIRPDEVTYVGVLSACTHNG 142
++PDE+T VLSAC H G
Sbjct: 1007 GQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIG 1042
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D+ ++ Y G V+ F +M +RD V WT++I G AL LF
Sbjct: 1060 NADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSL 1119
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
M +RP T V +L A + G V+K M R
Sbjct: 1120 MLREGVRPTHGTFVGVLLACAH--AGVVDKGLEYFESMER 1157
>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ GY N +D AR+ F MPER+ V W MI GY + + +E +TLF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLF 261
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
EMQ T+++ PD+ TI+ +L A MY K
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGVL 135
CG++EKA+R+ +M K +W AMI G A++ D F T+ +PDE+T + V+
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVI 381
Query: 136 SACTHNG 142
+AC H G
Sbjct: 382 TACNHGG 388
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +SWT ++SGYI G++D+A + F QMP +D V++ AM+DG+++ A L
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS- 118
F EM + I + YC D++ A+++ M ++ +W MI G +
Sbjct: 199 FDEMTHKTV------ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNK 252
Query: 119 ------------DPFPTIRPDEVTYVGVLSACTHNG 142
++ PD+VT + VL A + G
Sbjct: 253 QPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTG 288
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y G++ AR F +MP R V WTA+I GY+R A LF +M
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM- 170
Query: 65 TSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P +V I A M + K GD+ A+R+ +M K TWT MI G
Sbjct: 171 -----PHVKDVV-IYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHG 216
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 96/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++++ T +V+GY GQ++ AR F QM ++D V W+AMI GY + +EAL LF
Sbjct: 284 MTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLF 343
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ+ I+PD+ T++ ++TA MY KC
Sbjct: 344 NEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKC 403
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVGVL 135
G +E+A+R+ KM RK+ +WT MI A+ D +R P+ +T+VGVL
Sbjct: 404 GSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVL 463
Query: 136 SACTHNG 142
AC+H G
Sbjct: 464 YACSHAG 470
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/217 (27%), Positives = 84/217 (38%), Gaps = 78/217 (35%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D T +V Y G++ AR F +M RD V W+ MIDGY + F +AL LF E
Sbjct: 154 DSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEE 213
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+ N+ PDE + +L+A MY CG
Sbjct: 214 MKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGS 273
Query: 90 -------------------------------VEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+E A+ V +M++KD W+AMI G A S
Sbjct: 274 MDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAES 333
Query: 119 DPFPT-------------IRPDEVTYVGVLSACTHNG 142
D P I+PD+VT + V++AC H G
Sbjct: 334 DS-PQEALNLFNEMQSLGIKPDQVTMLSVITACAHLG 369
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ AR+ F +MP ++ + WT MI + AL F +M+ NI P+
Sbjct: 396 LIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
T V +L Y G VE+ +++ M+ + T
Sbjct: 456 GITFVGVL--YACSHAGLVEEGRKIFYSMINEHNIT 489
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVT 130
MY CG + +A+ + KM +D TW+ MI G S F + PDE+
Sbjct: 166 MYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMM 225
Query: 131 YVGVLSACTHNGNETF 146
VLSAC GN ++
Sbjct: 226 LSTVLSACGRAGNLSY 241
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R REAL LF
Sbjct: 160 MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELF 219
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ +RPDE +V +++A MY KC
Sbjct: 220 REMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKC 279
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVL 135
G ++ A +V M RK TW +MI A D F IRPD VT++ +L
Sbjct: 280 GCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALL 339
Query: 136 SACTHNG 142
+A TH G
Sbjct: 340 TAYTHKG 346
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW ++SGY+ + ++A + F ++P R+ V WT+MI GY + + F+EA+ LF EM
Sbjct: 76 RDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREM 135
Query: 64 QTSNIRPDEFTIVRILTA-------------YMYC--------------------KCGDV 90
Q D TI +L+A ++YC KCGD+
Sbjct: 136 QIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDI 195
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSA 137
+KA + + + D F+W+A+I GLA++ + IRP+E+T++GVL A
Sbjct: 196 QKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCA 255
Query: 138 CTHNG 142
C H G
Sbjct: 256 CNHGG 260
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 113 bits (283), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R REAL LF
Sbjct: 347 MVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELF 406
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ +RPDE +V +++A MY KC
Sbjct: 407 REMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKC 466
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVL 135
G ++ A +V M RK TW +MI A D F IRPD VT++ +L
Sbjct: 467 GCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALL 526
Query: 136 SACTHNG 142
+A TH G
Sbjct: 527 TAYTHKG 533
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
RG++++ RQ M V WT M+ Y + R RE L LF E++ +RP +
Sbjct: 102 RGELELPRQ--VMMKYLGDVSWTVMVSMYAQAKRSREPLELFREIRDVRVRPTD 153
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++++SW ++ GY G + AR+ F M +RD + WT MI Y + +F EAL LF
Sbjct: 239 MQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLF 298
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM S ++PDE T+ +L+A MYCKC
Sbjct: 299 KEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKC 358
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVL 135
G VEKA V ++M +KD +WT++I GLA++ D F ++P +VG+L
Sbjct: 359 GVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGIL 418
Query: 136 SACTHNG 142
AC H G
Sbjct: 419 LACAHAG 425
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 76/208 (36%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y + G + +A++ F +MPERD V W +++ GY + RFRE L +F M+ + ++ D
Sbjct: 118 LINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGD 177
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
T+V+++ A MY + G V A+ V
Sbjct: 178 AVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFD 237
Query: 99 KMLRKDKFTWTAMIVG-------LAISDPF------------------------------ 121
+M ++ +W AMI+G +A + F
Sbjct: 238 QMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRL 297
Query: 122 ------PTIRPDEVTYVGVLSACTHNGN 143
++PDE+T VLSAC H G+
Sbjct: 298 FKEMMESKVKPDEITVASVLSACAHTGS 325
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +++GY G VD AR+ F MPER+ V W AMI Y++ NR EA LF
Sbjct: 181 MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALF 240
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ N+ D+F +L+A MYCKC
Sbjct: 241 DRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKC 300
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +EKA V ++ +K +W MI GLA+ + PD +T+V VL
Sbjct: 301 GCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVL 360
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 361 SACAHSG 367
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A + F ++P++ W MI G + A+ LF EM+ +
Sbjct: 291 TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVA 350
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T V +L+A + G VE+ + + M
Sbjct: 351 PDGITFVNVLSACAH--SGLVEEGKHYFQYM 379
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ISW +VSG++N G +D+A ++F++ P RD + W A++ GY R F E + LF +M
Sbjct: 288 KDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKSFNEVMKLFHDM 347
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
S + D+ T V +++A MYCKCG+V
Sbjct: 348 VASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEFDHQDAFLASALVDMYCKCGNV 407
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+ A V K L KD WTAMI GLA + + P+ VT + VLSAC
Sbjct: 408 KTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCKMQTEVVAPNGVTLLAVLSAC 467
Query: 139 THNG 142
+H+G
Sbjct: 468 SHSG 471
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D + +V Y G V A F + ++D LWTAMI G EAL LF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFCK 447
Query: 63 MQTSNIRPDEFTIVRILTA 81
MQT + P+ T++ +L+A
Sbjct: 448 MQTEVVAPNGVTLLAVLSA 466
Score = 42.0 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 35/139 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ YI+ G V+ A F D V M+ GY+ +AL F +M + I D
Sbjct: 162 LIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVD 221
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
++T V +LT MY KCG + A+ +
Sbjct: 222 QYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTI 281
Query: 97 LRKMLRKDKFTWTAMIVGL 115
+ KD +W M+ G
Sbjct: 282 FGETGEKDAISWNTMVSGF 300
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+++ W ++ + +++ +Q F MP+RD V W +MI G+ R+ +++EALT F EM
Sbjct: 256 KNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM 315
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ S + P+ T++ L+A MY KCGD+
Sbjct: 316 EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDI 375
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+KA ++ + R+D FTWT+++ GLA+ ++PD+VT VGVLSAC
Sbjct: 376 DKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSAC 435
Query: 139 THNG 142
H G
Sbjct: 436 AHAG 439
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+D + ++ Y G +D A Q F + RD WT+++ G R +AL F +
Sbjct: 356 NRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSK 415
Query: 63 MQTSNIRPDEFTIVRILTA 81
M+ + ++PD+ T+V +L+A
Sbjct: 416 MKEAQVQPDDVTMVGVLSA 434
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 38/141 (26%)
Query: 10 TDIVSG-----YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ VSG Y+ G V RQ F +M + VLWT +I Y+ V +AL LF M+
Sbjct: 125 SEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMR 184
Query: 65 TSNIRPDEFTIVRILTA-----------YMYC----------------------KCGDVE 91
+ PD I +++A M+C +CG ++
Sbjct: 185 EVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLD 244
Query: 92 KAQRVLRKMLRKDKFTWTAMI 112
A R ++ K+ W MI
Sbjct: 245 YAYRFFQETPMKNIVVWNTMI 265
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+++ W ++ + +++ +Q F MP+RD V W +MI G+ R+ +++EALT F EM
Sbjct: 256 KNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEM 315
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ S + P+ T++ L+A MY KCGD+
Sbjct: 316 EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDI 375
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+KA ++ + R+D FTWT+++ GLA+ ++PD+VT VGVLSAC
Sbjct: 376 DKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSAC 435
Query: 139 THNG 142
H G
Sbjct: 436 AHAG 439
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+D + ++ Y G +D A Q F + RD WT+++ G R +AL F +
Sbjct: 356 NRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSK 415
Query: 63 MQTSNIRPDEFTIVRILTA 81
M+ + ++PD+ T+V +L+A
Sbjct: 416 MKEAQVQPDDVTMVGVLSA 434
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 38/141 (26%)
Query: 10 TDIVSG-----YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ VSG Y+ G V RQ F +M + VLWT +I Y+ V +AL LF M+
Sbjct: 125 SEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMR 184
Query: 65 TSNIRPDEFTIVRILTA-----------YMYC----------------------KCGDVE 91
+ PD + +++A M+C +CG ++
Sbjct: 185 EVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLD 244
Query: 92 KAQRVLRKMLRKDKFTWTAMI 112
A R ++ K+ W MI
Sbjct: 245 YAYRFFQETPMKNIVVWNTMI 265
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SG++ GQ+ AR+ F +MP R V WT MI+GY R + +AL +F
Sbjct: 167 MTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIF 226
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ I PDE +++ +L A MY KC
Sbjct: 227 REMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKC 286
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-ISDPFPTIR-----------PDEVTYVGVL 135
G +++A + +M+ KD +W+ MI GLA + IR P+ VT+VGVL
Sbjct: 287 GCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVL 346
Query: 136 SACTHNG 142
SAC H G
Sbjct: 347 SACAHAG 353
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +D++SW ++ GY G+VD+AR+ F M +RD W++M+ Y + R ++AL L+
Sbjct: 132 MRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELW 191
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + + PD T+V +L+A MY KC
Sbjct: 192 REMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKC 251
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
GD+E + RV M KD TW++MI+GLA +S+ ++P+EVT++
Sbjct: 252 GDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSE---GLQPNEVTFI 308
Query: 133 GVLSACTHNG 142
GVL +CTH G
Sbjct: 309 GVLISCTHLG 318
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/189 (33%), Positives = 90/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +V GY G VD AR+ F MPE+D V WT M+ GY R R +AL LF
Sbjct: 250 MPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYARAGRHAQALELF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
MQ+ ++RP+E T+V + +A MY
Sbjct: 310 RTMQSGDVRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYA 369
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVG 133
KCG + A +V R + RK+ W A+I GLA + D F + +PD VT+V
Sbjct: 370 KCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPDSVTFVS 429
Query: 134 VLSACTHNG 142
VL+AC G
Sbjct: 430 VLAACARAG 438
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 71/173 (41%), Gaps = 39/173 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE-- 62
DV+SW +V+GY G++ AR+ F MP R+ W+AM+ Y + A +F
Sbjct: 159 DVVSWNTVVAGYARCGELGNARRAFDGMPRRNGASWSAMVGAYAAAGQLDVARDMFDRAP 218
Query: 63 -----------MQTSNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQRVL 97
M R + R + M Y GDV+ A+ +
Sbjct: 219 AAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELF 278
Query: 98 RKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSAC 138
M KD +WT M+ G A + + F T +RP+EVT V V SAC
Sbjct: 279 DAMPEKDVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVFSAC 331
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ D+A + F + ++ W A+I G R + +F +M+ S+ +PD
Sbjct: 364 LIDMYAKCGRPDVAAKVFRSLDRKNVSAWNALIAGLAANGDARRCIDVFEQMKVSDEKPD 423
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T V +L A + G V++ +R R M
Sbjct: 424 SVTFVSVLAA--CARAGLVDEGRRCFRSM 450
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 96/188 (51%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISWT ++ GY N G V AR F MPE++ V W AMI GY + + EAL LF
Sbjct: 225 MPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLF 284
Query: 61 PEMQTSNI-RPDEFTIVRILTAY---------------------------------MYCK 86
E+Q+S + P+E T+V IL A MY K
Sbjct: 285 RELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLK 344
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
CG++ KA++V ++ +K+ TW A+I G A++ + F I+P+++T GV
Sbjct: 345 CGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGV 404
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 405 LSACSHGG 412
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y G + +AR+ F MP+R V WTA+I GY+R A LF M
Sbjct: 136 DMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLM- 194
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P + L Y K GD+E A+ + +M ++ +WT+MI G
Sbjct: 195 -----PGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYG 239
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats.
Identities = 64/188 (34%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SWT ++ GY G+ D A+ F MP +D W A+I Y + + +EAL LF
Sbjct: 298 MPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELF 357
Query: 61 PEMQTSNI-RPDEFTIVRILTAY---------------------------------MYCK 86
E+Q S +PDE T+V L+A MYCK
Sbjct: 358 HELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCK 417
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CGD++KA V + RKD F W+AMI GLA+ D ++P+ VT+ +
Sbjct: 418 CGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNI 477
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 478 LCACSHVG 485
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 83/215 (38%), Gaps = 77/215 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y G++ + + F +P RD V W +MI +++ EAL LF EM+
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
T N++P+ T+V +L+A MY KCG VE
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVE 289
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFP------------------- 122
A+R+ KM KD +WT M+VG A I D P
Sbjct: 290 DAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGK 349
Query: 123 ---------------TIRPDEVTYVGVLSACTHNG 142
T +PDEVT V LSAC G
Sbjct: 350 PKEALELFHELQLSKTAKPDEVTLVSTLSACAQLG 384
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 68/171 (39%), Gaps = 46/171 (26%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFT------ 74
+D A+Q F Q+P + W +I Y + ++L +F M S PD+FT
Sbjct: 85 LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144
Query: 75 -----------------IVRILTA----------YMYCKCGDVEKAQRVLRKMLRKDKFT 107
++++L + Y KCG++ RV + R+D +
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204
Query: 108 WTAMIV----------GLAISDPFPT--IRPDEVTYVGVLSACTHNGNETF 146
W +MI L + T ++P+ +T VGVLSAC + F
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEF 255
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 89/182 (48%), Gaps = 45/182 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW ++ GY+ G AR+ F MP+RD V W+ MI+GY++ +RF+E L LF +M
Sbjct: 201 DGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMM 260
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I P+E +V L+A MY KCG VE
Sbjct: 261 GEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVE 320
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
+A V KM K+ W+AMI GLAI+ ++P+EVT++G+L+AC+
Sbjct: 321 RALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACS 380
Query: 140 HN 141
H+
Sbjct: 381 HS 382
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V+ A + F +M E++ + W+AMI+G + ++AL LF +M+ ++
Sbjct: 307 TALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVK 366
Query: 70 PDEFTIVRILTAYMYCKCGD 89
P+E T + IL A + K D
Sbjct: 367 PNEVTFIGILNACSHSKLVD 386
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 48/143 (33%), Gaps = 49/143 (34%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y + G ++ A F + PE D W MI GYL
Sbjct: 177 LVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYL----------------------- 213
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP--------- 122
KCG + A+R+ M +D +W+ MI G F
Sbjct: 214 --------------KCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDM 259
Query: 123 ---TIRPDEVTYVGVLSACTHNG 142
I P+E V LSAC H G
Sbjct: 260 MGEKIEPNESVLVNALSACAHLG 282
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 47/190 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++GY+ G+++ AR F + PE+D V W MI GY+ R+AL +F
Sbjct: 205 MPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM+ PDE T++ +L+A MY K
Sbjct: 265 EEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAK 324
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVG 133
CG +E A +V +KM KD TW ++I GLA I+P+E+T+VG
Sbjct: 325 CGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVG 384
Query: 134 VLSACTHNGN 143
V+ AC+H GN
Sbjct: 385 VIVACSHAGN 394
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ N G + IAR F +PER V W+A+ GY R A +F EM ++ I
Sbjct: 158 HSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMI 217
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR--- 125
Y K G++E A+ + + KD TW MI G + + F +R
Sbjct: 218 TG------YVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVG 271
Query: 126 --PDEVTYVGVLSACTHNGN 143
PDEVT + +LSAC G+
Sbjct: 272 ECPDEVTMLSLLSACADLGD 291
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT----- 74
G ++ A Q FAQ+ E D +W M+ G + + + L+ +M+ ++PD+FT
Sbjct: 61 GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLL 120
Query: 75 ----------------------------IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
VR Y + CGD+ A+ + + +
Sbjct: 121 KGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVV 180
Query: 107 TWTAMIVGLA 116
+W+A+ G A
Sbjct: 181 SWSALTAGYA 190
>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 555
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ GY N +D AR+ F MPER+ V W MI GY + + +E + LF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLF 261
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
EMQ T+++ PD+ TI+ +L A MY K
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGVL 135
CG++EKA+R+ +M K +W AMI G A++ D F T+ +PDE+T + V+
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVI 381
Query: 136 SACTHNG 142
+AC H G
Sbjct: 382 TACNHGG 388
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +SWT ++SGYI G++D+A + F QMP +D V++ AM+DG+++ A L
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS- 118
F EM + I + YC D++ A+++ M ++ +W MI G +
Sbjct: 199 FDEMTHKTV------ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNK 252
Query: 119 DPFPTIR------------PDEVTYVGVLSACTHNG 142
P IR PD+VT + VL A + G
Sbjct: 253 QPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTG 288
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y G++ AR F +MP R V WTA+I GY+R A LF +M
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM- 170
Query: 65 TSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P +V I A M + K GD+ A+R+ +M K TWT MI G
Sbjct: 171 -----PHVKDVV-IYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHG 216
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 88/178 (49%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y GQVD AR+ F QM RD V W+AMI GY + +R REAL LF EMQ +NI
Sbjct: 264 TSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANID 323
Query: 70 PDEFTIVRIL-------------------------------TAYM--YCKCGDVEKAQRV 96
P+E T+V IL TA M Y KCG VE + V
Sbjct: 324 PNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEV 383
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
KM K+ +WT +I GLA + + P++VT++GVLSAC+H G
Sbjct: 384 FGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAG 441
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 45/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y N G+V++AR+ F +M ER+ W +M GY + + E + LF EM +IR D
Sbjct: 165 LIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFD 224
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T+V +LTA MY KCG V+ A+R+
Sbjct: 225 EVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFD 284
Query: 99 KMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
+M R+D W+AMI G + + D F I P+E+T V +LS+C
Sbjct: 285 QMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCA 337
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 66/163 (40%), Gaps = 45/163 (27%)
Query: 21 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
+D A F Q+ E D + MI G+ EA+ LF EM ++++PDEFT IL
Sbjct: 73 SMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILK 132
Query: 81 A---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFT 107
+MY CG+VE A+RV +M ++ T
Sbjct: 133 VCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRT 192
Query: 108 WTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
W +M G S + IR DEVT V VL+AC
Sbjct: 193 WNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTAC 235
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT +VSGY G V+ A+ F MPE++ W AMI GY + R +AL LF
Sbjct: 248 MRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELF 307
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQT+++ P+E T+V +L A MY KC
Sbjct: 308 REMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKC 367
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G++ KA+ M ++ +W A+I G A++ + F + P+EVT +GVL
Sbjct: 368 GEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVL 427
Query: 136 SACTHNG 142
SAC H G
Sbjct: 428 SACNHCG 434
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +SWT ++ GY G + AR+ F +M +RD V + AMIDGY+++ A LF
Sbjct: 186 MSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELF 245
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
EM+ N+ + +++ YC GDVE A+ + M K+ FTW AMI G
Sbjct: 246 NEMRERNV----VSWTSMVSG--YCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRR 299
Query: 115 ------LAISDPFPTIRPDEVTYVGVLSACTHNG 142
L ++ P+EVT V VL A G
Sbjct: 300 SHDALELFREMQTASVEPNEVTVVCVLPAVADLG 333
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ A+ F M ER+ W A+I+G+ +EAL +F M
Sbjct: 358 TALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFG 417
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
P+E T++ +L+A + CG VE+ +R M R
Sbjct: 418 PNEVTMIGVLSACNH--CGLVEEGRRWFNAMER 448
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SW+ +V ++ G++++ARQ F +MPERD V WT M+ GY + R REAL LF
Sbjct: 406 MVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELF 465
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ +RPDE +V +++A MY KC
Sbjct: 466 REMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKC 525
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVL 135
G ++ A +V M RK TW +MI A D F IRPD VT++ +L
Sbjct: 526 GCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALL 585
Query: 136 SACTHNG 142
+A TH G
Sbjct: 586 TAYTHKG 592
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++SWT +V GY G +D+AR+ ++PE+ V W A+I G ++ + +EAL LF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I PD+ T+V L+A MY KC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVL 135
G++ +A +V ++ +++ TWTA+I GLA+ D I PDE+T++GVL
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499
Query: 136 SACTHNG 142
SAC H G
Sbjct: 500 SACCHGG 506
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V Y G + A Q F ++P+R+ + WTA+I G ++AL+ F +M
Sbjct: 425 DVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMI 484
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
I PDE T + +L+A C G VE+ ++ +M K
Sbjct: 485 HIGIVPDEITFLGVLSA--CCHGGLVEEGRKYFSEMSSK 521
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 76/199 (38%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G++ +A F + RD V W +MI G ++ EA+ ++ EM+ +RP+E T++ ++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
++ MY KCG++ A+ + M +K
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326
Query: 107 TWTAMIVGLA----------ISDPFP---------------------------------T 123
+WT M++G A I P T
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386
Query: 124 IRPDEVTYVGVLSACTHNG 142
I PD+VT V LSAC+ G
Sbjct: 387 IEPDKVTMVNCLSACSQLG 405
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 19/157 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMIDGYLRVNRFRE 55
+K +V SW + GY+ G ++ + +M + D + ++ G
Sbjct: 117 IKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCL 176
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV-- 113
L + + D F V + M CG++ A V K +D TW +MI
Sbjct: 177 GLGVLGHVLKFGFECDIF--VHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGC 234
Query: 114 ---GLAISD-------PFPTIRPDEVTYVGVLSACTH 140
GLAI +RP+E+T +G++S+C+
Sbjct: 235 VKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ISW +VSG++N G +D+A ++F++ P RD + W A++ GY R F E + LF +M
Sbjct: 288 KDAISWNTMVSGFVNAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEVMKLFHDM 347
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
S + D+ T V +++A MYCKCG+V
Sbjct: 348 LASCVNLDKVTAVTLISAAAGKGSLNHAKSVHGWVVKEFGHQDAFLASALVDMYCKCGNV 407
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+ A V K L KD WTAMI GLA + + P+ VT + VLSAC
Sbjct: 408 KIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEVVAPNGVTLLAVLSAC 467
Query: 139 THNG 142
+H+G
Sbjct: 468 SHSG 471
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D + +V Y G V IA F + ++D LWTAMI G EAL LF +
Sbjct: 388 HQDAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWK 447
Query: 63 MQTSNIRPDEFTIVRILTA 81
MQT + P+ T++ +L+A
Sbjct: 448 MQTEVVAPNGVTLLAVLSA 466
Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 35/139 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ YI+ G V+ A F D V M+ GY+ +AL F +M + I D
Sbjct: 162 LIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVD 221
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
++T V +LT MY KCG + A+ +
Sbjct: 222 QYTAVALLTCCGRLKNELIGRSVHGVIVRRMDAGDHGLILVNALLDMYAKCGRMNAAKTI 281
Query: 97 LRKMLRKDKFTWTAMIVGL 115
+ KD +W M+ G
Sbjct: 282 FGEAGEKDAISWNTMVSGF 300
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV++W ++ G+ G +D A+ F +MP+R+ V W +MI G++R RF++AL +F EMQ
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+++PD FT+V +L A MYCKCG +E
Sbjct: 251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPT-----IRPDEVTYVGVLSACT 139
+ V +K W +MI+GLA D F + PD V+++GVL+AC
Sbjct: 311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 140 HNG 142
H+G
Sbjct: 371 HSG 373
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T ++ Y G ++ F P++ W +MI G L N F E A+ LF E++ S +
Sbjct: 297 TALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG-LANNGFEERAMDLFSELERSGL 355
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-------WTAMI-----VGL- 115
PD + + +LTA + G+V +A R M K+K+ +T M+ GL
Sbjct: 356 EPDSVSFIGVLTACAH--SGEVHRADEFFRLM--KEKYMIEPSIKHYTLMVNVLGGAGLL 411
Query: 116 ----AISDPFPTIRPDEVTYVGVLSACTHNGN 143
A+ P + D V + +LSAC GN
Sbjct: 412 EEAEALIKNMP-VEEDTVIWSSLLSACRKIGN 442
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM--------PERDYVLWTAMIDGYLRVNR 52
+ +K+ W I+ G+ ++A F M P+R + + ++ Y R+ +
Sbjct: 84 INHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPSVFKAYGRLGQ 141
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
R+ L + + D F +R +MY CG + +A R+ M+ D W +MI
Sbjct: 142 ARDGRQLHGMVIKEGLEDDSF--IRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMI 199
Query: 113 VGLA 116
+G A
Sbjct: 200 MGFA 203
>gi|413943921|gb|AFW76570.1| hypothetical protein ZEAMMB73_758095 [Zea mays]
Length = 397
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +VSGY GQ + AR + Q ++D +LWTAMI+ ++ F EALTLF
Sbjct: 161 MPERNIISWTILVSGYGITGQSNKARVLYYQCTQKDLILWTAMINACVQHGSFDEALTLF 220
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ ++ PD+F+++ +LT Y M KC
Sbjct: 221 QDMQLQHVEPDKFSVITLLTCYANIGAFDQCEWIHWYAEDKNMKIDAVRDTTLMEMCSKC 280
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G V+K+ ++ R+M KD WTA+I GL + +PD +T+ VL
Sbjct: 281 GHVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGITFTRVL 340
Query: 136 SACTHNG 142
SAC H G
Sbjct: 341 SACCHGG 347
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G VD + Q F +M +D V WTA+I G + +AL LF E Q S +PD T R+L
Sbjct: 281 GHVDKSLQIFRRMQGKDVVAWTAIICGLTTNGQASKALELFEEKQRSKTKPDGITFTRVL 340
Query: 80 TAYMYCKCGDVEKAQRVLRKM 100
+A C G V++ QR + M
Sbjct: 341 SA--CCHGGLVDEGQRHFQAM 359
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ISW ++SGY+ G + A F MPE+D V W+AMI GY + F EAL LF EMQ
Sbjct: 336 DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQ 395
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPDE +V ++A MY KCG VE
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVLSACT 139
A V M K TW A+I+GLA++ F ++ P+E+T++GVL AC
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACR 515
Query: 140 HNG 142
H G
Sbjct: 516 HMG 518
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 86/246 (34%), Gaps = 110/246 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D++SW +++GY+ G+V+ A + F MPER
Sbjct: 170 DLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVR 229
Query: 36 ----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA---------- 81
D V W+AM+ Y + EAL LF EM+ S + DE +V L+A
Sbjct: 230 GRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMG 289
Query: 82 -----------------------YMYCKCGDVEKAQRV--------------------LR 98
++Y CG++ A+R+ LR
Sbjct: 290 RWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLR 349
Query: 99 ------------KMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGV 134
M KD +W+AMI G A + F +RPDE V
Sbjct: 350 CGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSA 409
Query: 135 LSACTH 140
+SACTH
Sbjct: 410 ISACTH 415
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV +++ Y G V AR+ F + P D V W ++ GY++ EA +F
Sbjct: 137 DGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEG 196
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR--KMLRKDKFTWTAMI 112
M P+ TI ++ + G VEKA+R+ + +D +W+AM+
Sbjct: 197 M------PERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 19/156 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T ++ Y+ G V+ A + F M E+ W A+I G ++L +F +M+
Sbjct: 437 NVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMK 496
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS------ 118
+ P+E T + +L A + G V + M+ + K G +
Sbjct: 497 KTGTVPNEITFMGVLGACRH--MGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAG 554
Query: 119 ---------DPFPTIRPDEVTYVGVLSAC-THNGNE 144
D P + PD T+ +L AC H NE
Sbjct: 555 LLKEAEELIDSMP-MAPDVATWGALLGACRKHRDNE 589
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++SWT +V GY G +D+AR+ ++PE+ V W A+I G ++ + +EAL LF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I PD+ T+V L+A MY KC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVL 135
G++ +A +V ++ +++ TWTA+I GLA+ D I PDE+T++GVL
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499
Query: 136 SACTHNG 142
SAC H G
Sbjct: 500 SACCHGG 506
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V Y G + A Q F ++P+R+ + WTA+I G ++AL+ F +M
Sbjct: 425 DVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMI 484
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
I PDE T + +L+A C G VE+ ++ +M K
Sbjct: 485 HIGIVPDEITFLGVLSA--CCHGGLVEEGRKYFSEMSSK 521
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 76/199 (38%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G++ +A F + RD V W +MI G ++ EA+ ++ EM+ +RP+E T++ ++
Sbjct: 207 GELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMI 266
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
++ MY KCG++ A+ + M +K
Sbjct: 267 SSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLV 326
Query: 107 TWTAMIVGLA----------ISDPFP---------------------------------T 123
+WT M++G A I P T
Sbjct: 327 SWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRT 386
Query: 124 IRPDEVTYVGVLSACTHNG 142
I PD+VT V LSAC+ G
Sbjct: 387 IEPDKVTMVNCLSACSQLG 405
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 19/157 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-----PERDYVLWTAMIDGYLRVNRFRE 55
+K +V SW + GY+ G ++ + +M + D + ++ G
Sbjct: 117 IKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCL 176
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV-- 113
L + + D F V + M CG++ A V K +D TW +MI
Sbjct: 177 GLGVLGHVLKFGFECDIF--VHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGC 234
Query: 114 ---GLAISD-------PFPTIRPDEVTYVGVLSACTH 140
GLAI +RP+E+T +G++S+C+
Sbjct: 235 VKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ 271
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++GY RG+++ AR+ F ++P+RD V W AMI GY+ ++AL +F
Sbjct: 170 MPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMF 229
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM++ PDE T++ +L+A MY K
Sbjct: 230 EEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAK 289
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
CG + +A V + M KD TW +++ GLA IRPDE+T+VGV
Sbjct: 290 CGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 349
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 350 LVACSHAG 357
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A Q F + E D +W MI G + A++L+ +M+ +RPD+FT +L
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A Y + CGD+ A+ + ++D
Sbjct: 86 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145
Query: 107 TWTAMIVGLA 116
W+A+ G A
Sbjct: 146 AWSALTAGYA 155
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ V+ ++ Y G + A + F M E+D W +++ G +++ LF
Sbjct: 273 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 332
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-------WTAMI-- 112
EM+ IRPDE T V +L A + G VE+ ++ M +D++ + M+
Sbjct: 333 EMRKLKIRPDEITFVGVLVACSH--AGRVEEGRQYFDLM--RDEYNIEPNIRHYGCMVDL 388
Query: 113 VGLA--ISDPFP-----TIRPDEVTYVGVLSACTHNGN 143
+G A +++ F I P+ + + +L AC +GN
Sbjct: 389 LGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGN 426
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 66/185 (35%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D ISW ++SG + G V+ AR F MPE+D V W+A+I GY + + F E L LF E
Sbjct: 367 NLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHE 426
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ IRPDE +V +++A MY KCG
Sbjct: 427 MQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGC 486
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSA 137
VE A V M K +W A+I+GLA++ D F ++ P+E+T++GVL A
Sbjct: 487 VENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGA 546
Query: 138 CTHNG 142
C H G
Sbjct: 547 CRHMG 551
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 88/243 (36%), Gaps = 107/243 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++GY+ +G V+ A+ F QMP+R
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD 265
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D V W+A+I GY + + EAL +F EM + +R DE +V +L+A
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKM 325
Query: 82 ---------------------YMYCKCGDV------------------------------ 90
+MY G++
Sbjct: 326 IHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGS 385
Query: 91 -EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSA 137
EKA+ + M KD +W+A+I G A D F IRPDE V V+SA
Sbjct: 386 VEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISA 445
Query: 138 CTH 140
CTH
Sbjct: 446 CTH 448
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV +++ Y G + AR+ F + P D V W +++ GY++ EA +F +
Sbjct: 173 DSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQ 232
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M NI IV + K G V +A ++ +M KD +W+A+I G + +
Sbjct: 233 MPQRNIVASNSMIV------LLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYE 286
Query: 123 T------------IRPDEVTYVGVLSACTH 140
+R DEV V VLSAC H
Sbjct: 287 EALVMFIEMNANGMRLDEVVVVSVLSACAH 316
Score = 41.2 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 22/156 (14%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEM 63
+VI T ++ Y+ G V+ A + F M E+ W A+I G L VN E +L +F EM
Sbjct: 470 NVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG-LAVNGLVERSLDMFSEM 528
Query: 64 QTSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRK-------DKFTWTAMIVGL 115
+ + + P+E T + +L A C+ G V++ + M+ K + ++G
Sbjct: 529 KNNGVIPNEITFMGVLGA---CRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGR 585
Query: 116 A--------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
A + + P + PD T+ +L AC +G+
Sbjct: 586 AGLLNEAEKLIESMP-MAPDVATWGALLGACKKHGD 620
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 33/126 (26%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT------- 74
+D + Q F ++ + +W M+ Y++ N +AL L+ M +N+ PD +T
Sbjct: 91 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150
Query: 75 -IVRILT-------------------------AYMYCKCGDVEKAQRVLRKMLRKDKFTW 108
VR+L MY CG++ A+++ + D +W
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 210
Query: 109 TAMIVG 114
+++ G
Sbjct: 211 NSILAG 216
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++GY RG+++ AR+ F ++P+RD V W AMI GY+ ++AL +F
Sbjct: 205 MPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM++ PDE T++ +L+A MY K
Sbjct: 265 EEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAK 324
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
CG + +A V + M KD TW +++ GLA IRPDE+T+VGV
Sbjct: 325 CGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGV 384
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 385 LVACSHAG 392
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A Q F + E D +W MI G + A++L+ +M+ +RPD+FT +L
Sbjct: 61 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 120
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A Y + CGD+ A+ + ++D
Sbjct: 121 KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 180
Query: 107 TWTAMIVGLA 116
W+A+ G A
Sbjct: 181 AWSALTAGYA 190
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ V+ ++ Y G + A + F M E+D W +++ G +++ LF
Sbjct: 308 RDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFT 367
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-------WTAMI-- 112
EM+ IRPDE T V +L A + G VE+ ++ M +D++ + M+
Sbjct: 368 EMRKLKIRPDEITFVGVLVACSH--AGRVEEGRQYFDLM--RDEYNIEPNIRHYGCMVDL 423
Query: 113 VGLA--ISDPFP-----TIRPDEVTYVGVLSACTHNGN 143
+G A +++ F I P+ + + +L AC +GN
Sbjct: 424 LGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGN 461
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DVISW ++ GY+ GQ++ AR+ F MP R V WT MI GY R+ + +AL +F
Sbjct: 172 MSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVF 231
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ I PDE +I+ +L A MY KC
Sbjct: 232 REMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKC 291
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPTIR--PDEVTYVGVL 135
G +++A + +++ KD +W+ MI GLA + + +R P+E+T++GVL
Sbjct: 292 GCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVL 351
Query: 136 SACTHNG 142
AC+H G
Sbjct: 352 LACSHTG 358
>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 544
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 89/190 (46%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K VISW +++ YI G V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 218 MPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 277
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + ++P E T++ IL A MYCKC
Sbjct: 278 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 337
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP-----------TIRPDEVTYV 132
G++ A + M K W AM++GLA+ + F +IRPD VT++
Sbjct: 338 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 397
Query: 133 GVLSACTHNG 142
GVL AC+H G
Sbjct: 398 GVLVACSHKG 407
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V +AR F Q+ + V W MI Y RV+ + A L M + I
Sbjct: 171 YSQCGLVSVARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLLELMPCKTVISWNTLI 230
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISD-----------PFPT 123
R Y + GDV+ A+RV M ++ +W +MI G +++ D
Sbjct: 231 AR------YIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAG 284
Query: 124 IRPDEVTYVGVLSACTHNG 142
++P EVT + +L AC G
Sbjct: 285 VKPTEVTLISILGACAETG 303
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISWT ++ GY + G V AR F MPER+ W AMI GY + N+ EAL LF
Sbjct: 211 MPARNVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNKSHEALKLF 270
Query: 61 PEMQTSNI-RPDEFTIVRILTAY---------------------------------MYCK 86
EMQ+ + PD+ T+V +L A MY K
Sbjct: 271 HEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKIDRSINVCTALVDMYAK 330
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI---SDPFPT---------IRPDEVTYVGV 134
CG++ KA+RV M +K++ +W A+I G A+ +D T ++P++VT + V
Sbjct: 331 CGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVKPNDVTMISV 390
Query: 135 LSACTHNG 142
LSAC H G
Sbjct: 391 LSACNHGG 398
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SWT ++ G + G + AR F QMPE+D + AM+DGY++ A +LF
Sbjct: 149 MAERGVVSWTALIGGCMRSGDMGNARILFDQMPEKDSAAYNAMLDGYVKAGDMESAQSLF 208
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M N+ I Y YC GDV A+ + M ++ F+W AMI G + ++
Sbjct: 209 DKMPARNV------ISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMIGGYSQNNK 262
Query: 121 -------FPTIR------PDEVTYVGVLSACTHNG 142
F ++ PD+VT V VL A G
Sbjct: 263 SHEALKLFHEMQSRTLFEPDKVTVVSVLPAIADLG 297
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y G++ +AR+ F +M ER V WTA+I G +R A LF +M
Sbjct: 122 DLYVSTALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQM- 180
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
P++ + Y K GD+E AQ + KM ++ +WT+MI G T
Sbjct: 181 -----PEKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSGGDVLTA 235
Query: 125 R 125
R
Sbjct: 236 R 236
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ AR+ F MP+++ W A+I+G+ EALT F EM+ ++
Sbjct: 322 TALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSEMKREGVK 381
Query: 70 PDEFTIVRILTAYMYCKCGD-VEKAQRVLRKM 100
P++ T++ +L+A C G VE+ +R + M
Sbjct: 382 PNDVTMISVLSA---CNHGGLVEEGKRWFKAM 410
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 124 MEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWF 183
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 184 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRC 243
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ V KM ++ +W ++IVG A + +PD VT+ G L
Sbjct: 244 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 303
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 304 TACSHVG 310
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ AR+ F +M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 240 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 299
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG---------------LAISDP 120
LTA + G VE+ R + M R + + G L +
Sbjct: 300 TGALTACSH--VGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQS 357
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC +GN T +
Sbjct: 358 MP-MKPNEVVIGSLLAACRTHGNNTVL 383
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ GY G++D+AR+ F MPE+D V WT MI GY + R+ + L LF
Sbjct: 250 MPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELF 309
Query: 61 PEMQT-SNIRPDEFTIVRILTAY-----------------------------------MY 84
MQ+ +IRP+E T+V +L+A MY
Sbjct: 310 RTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMY 369
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG + A ++ + +K+ W A+I GLA++ D F + +PD++T+V
Sbjct: 370 AKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPDDITFV 429
Query: 133 GVLSACTHNG 142
VL+AC H G
Sbjct: 430 SVLTACAHAG 439
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M +++ +SW+ +V Y G++D+AR+ F +MP R+ + W M+ G+ R A
Sbjct: 186 MPHRNGVSWSVMVGAYAAAGELDVAREMFDRMPAIGRNIITWNLMVTGFGRHGLLPLARK 245
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F EM NI + +L Y G+++ A+ + M KD +WT MI G A +
Sbjct: 246 MFDEMPIRNI----VSWNAMLRG--YAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQA 299
Query: 119 DPFPT-------------IRPDEVTYVGVLSACTH 140
+ IRP+EVT V VLSAC H
Sbjct: 300 GRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAH 334
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ D+A + F + +++ W A+I G + R + +F +M+ S +PD
Sbjct: 365 LIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMSEEKPD 424
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ T V +LTA + G V++ ++ + M
Sbjct: 425 DITFVSVLTACAH--AGLVDEGRQYFQSM 451
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK K+++SW ++ GY G + A++ F +MP RD + WT+MI GY + EA+ LF
Sbjct: 275 MKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLF 334
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM S ++PDE T+ L+A MYCKC
Sbjct: 335 QEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKC 394
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G VEKA +V M +D +WT++I GLA++ + I P T+VGVL
Sbjct: 395 GVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVL 454
Query: 136 SACTHNG 142
AC H G
Sbjct: 455 LACAHVG 461
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 76/208 (36%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G++ +A++ F M ERD V W ++I GY + NRF++ L LF EMQ N+R D
Sbjct: 154 LIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRAD 213
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
T+++ ++A MY + G ++ A RV
Sbjct: 214 SVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFY 273
Query: 99 KMLRKDKFTWTAMIVGLA----------ISDPFPT------------------------- 123
+M K+ +W AMI+G A + + P+
Sbjct: 274 QMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKL 333
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
++PDE+T LSAC H G+
Sbjct: 334 FQEMMVSMVKPDEITVATALSACAHLGS 361
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK K+++SW ++ GY G + A++ F +MP RD + WT+MI GY + EA+ LF
Sbjct: 234 MKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLF 293
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM S ++PDE T+ L+A MYCKC
Sbjct: 294 QEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKC 353
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G VEKA +V M +D +WT++I GLA++ + I P T+VGVL
Sbjct: 354 GVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVL 413
Query: 136 SACTHNG 142
AC H G
Sbjct: 414 LACAHVG 420
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 76/208 (36%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G++ +A++ F M ERD V W ++I GY + NRF++ L LF EMQ N+R D
Sbjct: 113 LIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRAD 172
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
T+++ ++A MY + G ++ A RV
Sbjct: 173 SVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFY 232
Query: 99 KMLRKDKFTWTAMIVGLA----------ISDPFPT------------------------- 123
+M K+ +W AMI+G A + + P+
Sbjct: 233 QMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKL 292
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
++PDE+T LSAC H G+
Sbjct: 293 FQEMMVSMVKPDEITVATALSACAHLGS 320
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N+ +SWT ++ G+ G ++ AR F +MPERD W A++ GY++ + +EA+ LF
Sbjct: 285 ISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALF 344
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + P+E T+V +L+A MY KC
Sbjct: 345 HEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKC 404
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPT-----IRPDEVTYVGVL 135
G+++KA V ++ ++ TWT+MI GLA + F ++PDE+T++GVL
Sbjct: 405 GNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVL 464
Query: 136 SACTHNG 142
SAC H G
Sbjct: 465 SACCHAG 471
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 55/202 (27%), Positives = 75/202 (37%), Gaps = 78/202 (38%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN--IRPDEFTI- 75
RG + AR+ F + P RD V W +I GY+R REAL LF + +RPDE T+
Sbjct: 169 RGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVI 228
Query: 76 ------------------------------VRILTAY--MYCKCGDVEKAQRVLRKMLRK 103
VR++ A MY KCG +E A V ++ +
Sbjct: 229 GAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNR 288
Query: 104 DKFTWTAMIVGLAI----------------SDPFP------------------------- 122
+WT MIVG A D FP
Sbjct: 289 TAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQ 348
Query: 123 --TIRPDEVTYVGVLSACTHNG 142
+ P+E+T V +LSAC+ G
Sbjct: 349 KSKVDPNEITMVNLLSACSQLG 370
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A F ++P ++ + WT+MI G EA+ F M ++
Sbjct: 395 TSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ 454
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA------ 116
PDE T + +L+A C G VE ++ M L + ++ MI +G A
Sbjct: 455 PDEITFIGVLSA--CCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEA 512
Query: 117 --ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ + P + PD V + + AC +GN T
Sbjct: 513 EQLVNAMP-MDPDAVVWGALFFACRMHGNITL 543
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQVD A + F +MPERD + WTAMI+G++ EAL F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWF 194
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRC 254
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G VE A++V KM ++ +W ++IVG A + +PD VT+ G L
Sbjct: 255 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGAL 314
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 315 TACSHVG 321
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F +M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 251 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTF 310
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV-GLAISDP 120
LTA + G VE+ R + M+ D ++ + L +
Sbjct: 311 TGALTACSH--VGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQS 368
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC ++GN T +
Sbjct: 369 MP-MKPNEVVIGSLLAACRNHGNNTVL 394
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 61/154 (39%), Gaps = 51/154 (33%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ T I+ Y RG+V AR F M +++ V W MIDGY+R
Sbjct: 109 VMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMR---------------- 152
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF---- 121
G V+ A ++ KM +D +WTAMI G ++ F
Sbjct: 153 ---------------------SGQVDNAAKMFDKMPERDLISWTAMINGF-VNKGFHEEA 190
Query: 122 ---------PTIRPDEVTYVGVLSACTHNGNETF 146
++PD V + L+ACT+ G +F
Sbjct: 191 LAWFREMQISGVKPDYVAIIAALNACTNLGALSF 224
>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SW +++ YI G V AR+ F MPER+ V W +MI G + V + AL LF
Sbjct: 216 MPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + ++P E T++ IL A MYCKC
Sbjct: 276 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 335
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP-----------TIRPDEVTYV 132
G++ A + M K W AM++GLA+ + F +IRPD VT++
Sbjct: 336 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 395
Query: 133 GVLSACTHNG 142
GVL AC+H G
Sbjct: 396 GVLVACSHKG 405
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V +AR F Q+ + V W MI Y VN + A L M + I
Sbjct: 169 YSQCGLVSVARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLELMPCKTVVSWNTLI 228
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISD-----------PFPT 123
R Y + GDV+ A+RV M ++ +W +MI G +++ D
Sbjct: 229 AR------YIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELFSEMQNAG 282
Query: 124 IRPDEVTYVGVLSACTHNG 142
++P EVT + +L AC G
Sbjct: 283 VKPTEVTLISILGACAETG 301
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ ++ GY RG + AR+ F +MP ++ V WTAMI+GY + R +E+++LF
Sbjct: 205 MPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKESISLF 264
Query: 61 PEMQTSNIRPDEFTIV-------------------------------RILTAY--MYCKC 87
E++ I PD T+V ++LTA M+ KC
Sbjct: 265 RELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVLTALVDMHAKC 324
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G+VE+A R++ + D + +TA+I GLA +RPD +T+VGVL
Sbjct: 325 GNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVRPDPITFVGVL 384
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 385 TACSHAG 391
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +S+ ++ + V A F MP R V W AM+ Y+ F A +F EM
Sbjct: 147 DAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGDFASARLVFDEMP 206
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-ISDPFPT 123
T + IV YCK G ++ A+ + KM K+ TWTAMI G A P +
Sbjct: 207 TRDSSSWSVLIVG------YCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQCGRPKES 260
Query: 124 -----------IRPDEVTYVGVLSACTHNGN 143
I PD T VGV+S+ + G+
Sbjct: 261 ISLFRELEAVGIEPDAATMVGVISSASQIGS 291
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ K+V+SWT ++S Y G +++ARQ F QMP ++ V W +MI YLR ++REAL LF
Sbjct: 323 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 382
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M+ S + PDE T+V IL A MY KCG
Sbjct: 383 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 442
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLS 136
V A + +M K+ +W +I LA+ I+ PDE+T G+LS
Sbjct: 443 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 502
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 503 ACSHSG 508
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 34/160 (21%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMI----------------DGYLRVNRFRE 55
+++ Y+ G + AR+ F + ++ V W +MI D Y +
Sbjct: 255 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNALXDMYAKCGNLHS 314
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
A +F Q N+ + +++AY + G +E A+++ +M K+ +W +MI
Sbjct: 315 AQAIFDRTQEKNV----VSWTSMISAY--AQHGSIEVARQIFDQMPGKNVVSWNSMISCY 368
Query: 116 -------AISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
D F +R PDE T V +L+AC+ G+
Sbjct: 369 LREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGD 408
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+ ++ Y G V A F +MP ++ V W +I EA+ LF EMQ
Sbjct: 431 YNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGT 490
Query: 69 RPDEFTIVRILTA-----------YMYCKCGDVEKAQRVLRK--MLRKDKFTWTAMIVGL 115
PDE T+ +L+A Y + + G + + R + + + +
Sbjct: 491 LPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLGRGGLLGEAI 550
Query: 116 AISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P ++PD V + +L AC +GN
Sbjct: 551 ELIGRMP-MKPDVVVWGALLGACRIHGN 577
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
+ G + A++ F Q+P+ + ++ ++I GY + +A+ LF M S + P+EFT+
Sbjct: 160 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 219
Query: 78 ILTAYMYCKC 87
+L A C C
Sbjct: 220 VLKA---CGC 226
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV++W I+ G G +D A++ F +MP+R+ V W +MI G++R RF++AL +F
Sbjct: 187 MMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFKDALEMF 246
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ +++PD FT+V +L A MYCKC
Sbjct: 247 REMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKC 306
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPF-----PTIRPDEVTYVGVL 135
G E+ +V K W +MI+GLA D F + PD V+++GVL
Sbjct: 307 GCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVL 366
Query: 136 SACTHNG 142
+AC H+G
Sbjct: 367 TACAHSG 373
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 61/149 (40%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G + + F P + W +MI G A+ LF E++ + +
Sbjct: 297 TALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLE 356
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVG-------- 114
PD + + +LTA + G+V KA R M K +T ++G
Sbjct: 357 PDSVSFIGVLTACAH--SGEVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEA 414
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
A+ P + D + + +L+AC NGN
Sbjct: 415 EALIKKMP-VEGDTIIWSSLLAACRKNGN 442
Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++ + Y + G RQ ++ E D + M+ Y+ EA LF
Sbjct: 127 LTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVG 186
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M ++ I+ + KCG +++AQ++ +M +++ +W +MI G + F
Sbjct: 187 MMGFDVVAWNSIIMGL------AKCGLIDQAQKLFDEMPQRNGVSWNSMISGFVRNGRFK 240
Query: 123 ------------TIRPDEVTYVGVLSACTHNG 142
++PD T V +L+AC + G
Sbjct: 241 DALEMFREMQERDVKPDGFTMVSLLNACAYLG 272
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 12/124 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM--------PERDYVLWTAMIDGYLRVNR 52
+ +K+ W I+ G+ ++A F M P+R + + ++ Y +
Sbjct: 84 INHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPSVFKAYASLGL 141
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
R+ L + + D F +R +MY CG + +A R+ M+ D W ++I
Sbjct: 142 ARDGRQLHGRVIKEGLEDDSF--IRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSII 199
Query: 113 VGLA 116
+GLA
Sbjct: 200 MGLA 203
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 45/178 (25%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W I+ GY G VD+AR F QM RD + + +MI GY+ R R+AL LF +M+ +
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM 366
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
R D FT+V +LTA MY KCG V++A
Sbjct: 367 RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V +M +D TWTAMI GLA + + F ++ P VTY+ VL+AC+H+
Sbjct: 427 VFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD + W ++ G + G +D AR+ Q PER+ V WT++I GY R R +A+ F M
Sbjct: 169 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 228
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + PDE ++ L+A MY KCGD+
Sbjct: 229 LSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDI 288
Query: 91 EKAQRVLRKMLRKDK-FTWTAMIVG 114
+AQ V + R K W A+I G
Sbjct: 289 AQAQAVFDAVGRGQKPEPWNAIIDG 313
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV T ++ Y+ G+VD A F +M ERD WTAMI G ++AL F +M
Sbjct: 403 EDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQM 462
Query: 64 QTSNIRPDEFTIVRILTA 81
+ +P T + +LTA
Sbjct: 463 KRDGFQPTSVTYIAVLTA 480
>gi|413925923|gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
Length = 501
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/178 (34%), Positives = 86/178 (48%), Gaps = 45/178 (25%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W I+ GY G VD+AR F QM RD + + +MI GY+ R R+AL LF +M+ +
Sbjct: 307 WNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGM 366
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
R D FT+V +LTA MY KCG V++A
Sbjct: 367 RADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATA 426
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V +M +D TWTAMI GLA + + F ++ P VTY+ VL+AC+H+
Sbjct: 427 VFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHS 484
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 63/145 (43%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD + W ++ G + G +D AR+ Q PER+ V WT++I GY R R +A+ F M
Sbjct: 169 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 228
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + PDE ++ L+A MY KCGD+
Sbjct: 229 LSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDI 288
Query: 91 EKAQRVLRKMLRKDK-FTWTAMIVG 114
+AQ V + R K W A+I G
Sbjct: 289 AQAQAVFDAVGRGQKPEPWNAIIDG 313
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV T ++ Y+ G+VD A F +M ERD WTAMI G ++AL F +M
Sbjct: 403 EDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQM 462
Query: 64 QTSNIRPDEFTIVRILTA 81
+ +P T + +LTA
Sbjct: 463 KRDGFQPTSVTYIAVLTA 480
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DVI + ++ Y Q+D AR+ F ++P R+ V WT++I GY R+N ++E L LF E+Q
Sbjct: 79 DVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGLELFRELQ 138
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + D + +++A MY KCGD+E
Sbjct: 139 IAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSKCGDIE 198
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSAC 138
KA ++ M++KD F+WTAMI G A++ + ++P+EVT++GVLSAC
Sbjct: 199 KAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFAQVETCNDVKPNEVTFLGVLSAC 258
Query: 139 THNG 142
+H G
Sbjct: 259 SHGG 262
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 62/154 (40%), Gaps = 46/154 (29%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAY----------- 82
RD V W +MI GYL+ R +AL +F E+ N +R DE T+V LTA
Sbjct: 7 RDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKK 66
Query: 83 ----------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
MY KC ++ A+ V K+ ++ WT++IVG A +
Sbjct: 67 IHALIVVNGFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNM 126
Query: 121 F------------PTIRPDEVTYVGVLSACTHNG 142
+ + D V+SAC H G
Sbjct: 127 YKEGLELFRELQIAGVIADAALVACVVSACGHMG 160
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R AL LF +M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLS 136
++ A V M KD TW +++ GLA+ D F +RPDE+T+V VL
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356
Query: 137 ACTHNG 142
AC+H G
Sbjct: 357 ACSHGG 362
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F M ++D W +++ G E++ +F +M +RPD
Sbjct: 288 LIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPD 347
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLA----ISDPFP 122
E T V +L A + G V+K + M K + + M+ L + + F
Sbjct: 348 EITFVAVLIACSH--GGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFE 405
Query: 123 TI-----RPDEVTYVGVLSACTHNG 142
I P+ V + +LSAC +G
Sbjct: 406 FIDTMKCEPNSVIWRTLLSACRVHG 430
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFT 74
RG + A F Q+P D ++ +I G R+A++L+ M +RPD+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 75 IVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMI--------VGLAISDPFPTI 124
+L A GD V+ V++ D F A+I +G+A +
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 125 RPDEVTYVGVLSACTHNGN 143
R D V + +++ C G+
Sbjct: 145 REDAVAWSAMITGCARRGD 163
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R AL LF +M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLS 136
++ A V M KD TW +++ GLA+ D F +RPDE+T+V VL
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356
Query: 137 ACTHNG 142
AC+H G
Sbjct: 357 ACSHGG 362
Score = 43.1 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F M ++D W +++ G E++ +F +M +RPD
Sbjct: 288 LIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPD 347
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK-------FTWTAMIVGLA--ISDPFP 122
E T V +L A + G V+K + M K + + ++G A + + F
Sbjct: 348 EITFVAVLIACSH--GGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFE 405
Query: 123 TI-----RPDEVTYVGVLSACTHNG 142
I P+ V + +LSAC +G
Sbjct: 406 FIDTMKCEPNSVIWRTLLSACRVHG 430
Score = 42.7 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFT 74
RG + A F Q+P D ++ +I G R+A++L+ M +RPD+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 75 IVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMI--------VGLAISDPFPTI 124
+L A GD V+ V++ D F A+I +G+A +
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 125 RPDEVTYVGVLSACTHNGN 143
R D V + +++ C G+
Sbjct: 145 REDAVAWSAMITGCARRGD 163
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R AL LF +M
Sbjct: 207 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 266
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 267 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 326
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLS 136
++ A V M KD TW +++ GLA+ D F +RPDE+T+V VL
Sbjct: 327 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 386
Query: 137 ACTHNG 142
AC+H G
Sbjct: 387 ACSHGG 392
Score = 43.1 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F M ++D W +++ G E++ +F +M +RPD
Sbjct: 318 LIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPD 377
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLA----ISDPFP 122
E T V +L A + G V+K + M K + + M+ L + + F
Sbjct: 378 EITFVAVLIACSH--GGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFE 435
Query: 123 TI-----RPDEVTYVGVLSACTHNG 142
I P+ V + +LSAC +G
Sbjct: 436 FIDTMKCEPNSVIWRTLLSACRVHG 460
Score = 42.7 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFT 74
RG + A F Q+P D ++ +I G R+A++L+ M +RPD+ T
Sbjct: 55 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 114
Query: 75 IVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMI--------VGLAISDPFPTI 124
+L A GD V+ V++ D F A+I +G+A +
Sbjct: 115 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 174
Query: 125 RPDEVTYVGVLSACTHNGN 143
R D V + +++ C G+
Sbjct: 175 REDAVAWSAMITGCARRGD 193
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V SW +VSG G ++ AR+ F +M E++ + W+AMIDGY++ ++EAL +F
Sbjct: 222 MEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVF 281
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ IRP +F + +L A MY KC
Sbjct: 282 NVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKC 341
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G ++ A V KM +K+ FTW AMI GL + RP+ +T +GVL
Sbjct: 342 GRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVL 401
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 402 SACAHSG 408
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y + G+V+ AR+ + D + + AMIDGYL+ A LF M+ N+
Sbjct: 175 YGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGS----- 229
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------T 123
++ + M KCG +E+A+ + +M K++ +W+AMI G +
Sbjct: 230 WNVMVSGM-AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREE 288
Query: 124 IRPDEVTYVGVLSACTHNG 142
IRP + VL+AC + G
Sbjct: 289 IRPRKFVLSSVLAACANLG 307
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G++D+A F +M +++ W AMI G R +A+ LF +MQ
Sbjct: 327 DAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQ 386
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
RP+ T++ +L+A + G V++ R+ M
Sbjct: 387 KQKFRPNGITLLGVLSACAH--SGMVDEGLRIFNSM 420
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ K+V+SWT ++S Y G +++ARQ F QMP ++ V W +MI YLR ++REAL LF
Sbjct: 184 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 243
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M+ S + PDE T+V IL A MY KCG
Sbjct: 244 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 303
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLS 136
V A + +M K+ +W +I LA+ I+ PDE+T G+LS
Sbjct: 304 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 363
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 364 ACSHSG 369
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+++ Y+ G + AR+ F + ++ D ++ A++D Y + A +F Q N+
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNV 188
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-------AISDPF 121
+ +++AY + G +E A+++ +M K+ +W +MI D F
Sbjct: 189 ----VSWTSMISAY--AQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLF 242
Query: 122 PTIR-----PDEVTYVGVLSACTHNGN 143
+R PDE T V +L+AC+ G+
Sbjct: 243 NKMRNSRVVPDEATLVSILAACSQLGD 269
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V + ++ Y G V A F +MP ++ V W +I EA+ LF EMQ
Sbjct: 289 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 348
Query: 66 SNIRPDEFTIVRILTA-----------YMYCKCGDVEKAQRVLRKM--LRKDKFTWTAMI 112
PDE T+ +L+A Y + + G + + R + + +
Sbjct: 349 DGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLG 408
Query: 113 VGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P ++PD V + +L AC +GN
Sbjct: 409 EAIELIGRMP-MKPDVVVWGALLGACRIHGN 438
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
+ G + A++ F Q+P+ + ++ ++I GY + +A+ LF M S + P+EFT+
Sbjct: 34 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93
Query: 78 ILTAYMYCKC 87
+L A C C
Sbjct: 94 VLKA---CGC 100
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQV+ A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 129 MEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWF 188
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 189 REMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRC 248
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ V KM ++ +W ++IVG A + +PD VT+ G L
Sbjct: 249 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 308
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 309 TACSHVG 315
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ AR+ F +M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 245 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 304
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG---------------LAISDP 120
LTA + G VE+ R + M R + + G L +
Sbjct: 305 TGALTACSH--VGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQS 362
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC ++GN T +
Sbjct: 363 MP-MKPNEVVIGSLLAACRNHGNNTVL 388
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIA-RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M +DV+SW ++S Y RG +++A R+ F + P ++ V W AMI GY RF E L L
Sbjct: 169 MLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVL 228
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F +MQ + ++PD T+V +L+A MY K
Sbjct: 229 FEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSK 288
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG +EKA V LRKD TW ++I GL+ +P+EVT+V V
Sbjct: 289 CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCV 348
Query: 135 LSACTHNG 142
LSAC+ G
Sbjct: 349 LSACSRAG 356
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/195 (21%), Positives = 67/195 (34%), Gaps = 77/195 (39%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A F+++P + +W +I Y ALT+F +M +++ PD++T L +
Sbjct: 61 AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKD------- 104
++Y CG +E A+ +L +ML +D
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180
Query: 105 -------------------------KFTWTAMIVGLAISDPFPT------------IRPD 127
+W AMI G + + F ++PD
Sbjct: 181 LSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPD 240
Query: 128 EVTYVGVLSACTHNG 142
T V VLSAC H G
Sbjct: 241 NCTLVSVLSACAHVG 255
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ K+V+SWT ++S Y G +++ARQ F QMP ++ V W +MI YLR ++REAL LF
Sbjct: 251 QEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFN 310
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M+ S + PDE T+V IL A MY KCG
Sbjct: 311 KMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCG 370
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLS 136
V A + +M K+ +W +I LA+ I+ PDE+T G+LS
Sbjct: 371 PVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLS 430
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 431 ACSHSG 436
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 77/208 (37%), Gaps = 76/208 (36%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y+ G + AR+ F + ++ V W +MI GY + ++EA LF +M+ + PD
Sbjct: 129 LIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPD 188
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
FT V +L+ MY KCG++ AQ +
Sbjct: 189 GFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFD 248
Query: 99 KMLRKDKFTWTAMIVGLA----------ISDPFPT------------------------- 123
+ K+ +WT+MI A I D P
Sbjct: 249 RTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDL 308
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
+ PDE T V +L+AC+ G+
Sbjct: 309 FNKMRNSRVVPDEATLVSILAACSQLGD 336
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 45/169 (26%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
+ G + A++ F Q+P+ + ++ ++I GY + +A+ LF M S + P+EFT+
Sbjct: 34 DAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPF 93
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKD 104
+L A +Y CG + A+++ + K
Sbjct: 94 VLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKT 153
Query: 105 KFTWTAMIVGLAI----SDPFPTIR--------PDEVTYVGVLSACTHN 141
+W +MI G A + F R PD T+V +LS C+ +
Sbjct: 154 LVSWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQS 202
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V + ++ Y G V A F +MP ++ V W +I EA+ LF EMQ
Sbjct: 356 VTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQA 415
Query: 66 SNIRPDEFTIVRILTA-----------YMYCKCGDVEKAQRVLRKM--LRKDKFTWTAMI 112
PDE T+ +L+A Y + + G + + R + + +
Sbjct: 416 DGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLG 475
Query: 113 VGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P ++PD V + +L AC +GN
Sbjct: 476 EAIELIGRMP-MKPDVVVWGALLGACRIHGN 505
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 48/188 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+K +W+ +V GY G++++AR+ F M ERD + WTAMI GY + + EAL LF E
Sbjct: 278 SKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKE 337
Query: 63 MQTSNIRPDEFTIVRILTAY----------------------------------MYCKCG 88
M+ I+PDE T+V +L+A MY KCG
Sbjct: 338 MEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCG 397
Query: 89 DVEKAQRVLRKMLR--KDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGV 134
++ A + R++ + K F + +MI GLA T ++PDEVT+VGV
Sbjct: 398 SIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV 457
Query: 135 LSACTHNG 142
L AC H+G
Sbjct: 458 LCACGHSG 465
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 74/202 (36%), Gaps = 79/202 (39%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +++AR F + RD V + MI GY VN+ AL LF EMQ S I PDEFT V +
Sbjct: 160 GNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALF 219
Query: 80 TAY-----------------------------------MYCKCGDVEKAQRVL------- 97
+ MY KCG + A+RV
Sbjct: 220 SVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSK 279
Query: 98 ---------------------RK----MLRKDKFTWTAMIVGLAISDPFPT--------- 123
RK M +D +WTAMI G + +
Sbjct: 280 SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEME 339
Query: 124 ---IRPDEVTYVGVLSACTHNG 142
I+PDEVT V VLSAC G
Sbjct: 340 ALGIKPDEVTLVAVLSACARLG 361
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 91/194 (46%), Gaps = 45/194 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW+ ++ G+ G +D A + F QMPE++ V WT M+DG+ R +AL++F
Sbjct: 276 MPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMF 335
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M +RP+ FTIV L+A MY KC
Sbjct: 336 SKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKC 395
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVL 135
G++E A V + +K TWT MI G AI F I+PDEV ++ +L
Sbjct: 396 GNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALL 455
Query: 136 SACTHNGNETFVIN 149
+AC H+G +N
Sbjct: 456 TACMHSGQVDIGLN 469
>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
Length = 744
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 45/179 (25%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW I+ GY G VD+AR F +M RD + + +M+ GY+ + REAL LF M+ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
+R D FT+V +LTA MY KCG V++A
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 95 RVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V ++M ++D TWTAMI GLA + + F +R P+ V+Y+ VL+AC+H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ++WT ++SG G + + +Q P RD + WT++I Y R NR REA+ F M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ I PDE T++ +L+A MY KCGD
Sbjct: 231 LSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290
Query: 91 EKAQRVLRKMLRKDK-FTWTAMIVG 114
AQ+V + R + +W A+I G
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDG 315
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y+ G+VD A F +M +RD WTAMI G + AL F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 65 TSNIRPDEFTIVRILTA 81
+P+ + + +LTA
Sbjct: 466 CDGFQPNSVSYIAVLTA 482
>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
Length = 799
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 45/179 (25%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW I+ GY G VD+AR F +M RD + + +M+ GY+ + REAL LF M+ +
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
+R D FT+V +LTA MY KCG V++A
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEAT 427
Query: 95 RVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V ++M ++D TWTAMI GLA + + F +R P+ V+Y+ VL+AC+H+
Sbjct: 428 IVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ++WT ++SG G + + +Q P RD + WT++I Y R NR REA+ F M
Sbjct: 171 KDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTM 230
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ I PDE T++ +L+A MY KCGD
Sbjct: 231 LSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDF 290
Query: 91 EKAQRVLRKMLRKDK-FTWTAMIVG 114
AQ+V + R + +W A+I G
Sbjct: 291 GHAQQVFDALGRGPRPQSWNAIIDG 315
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y+ G+VD A F +M +RD WTAMI G + AL F +M+
Sbjct: 406 DIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMR 465
Query: 65 TSNIRPDEFTIVRILTA 81
+P+ + + +LTA
Sbjct: 466 CDGFQPNSVSYIAVLTA 482
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 47/188 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K K+ +SW ++ GY+ G+ A + F +MPE+D + WT IDG+++ F +AL F
Sbjct: 158 LKVKNSVSWNTMIDGYMRNGETGSAMELFDEMPEKDAISWTVFIDGFIKKGHFEQALEWF 217
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + PD TI+ +L+A MY +C
Sbjct: 218 REMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRC 277
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGV 134
G +E A++V KML++ +W ++IVG A ++ F +PD V++ G
Sbjct: 278 GCIELARQVFHKMLKRTLVSWNSIIVGFA-ANGFAEEALEYFGLMQKEGFKPDGVSFTGA 336
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 337 LTACSHAG 344
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G +++ARQ F +M +R V W ++I G+ EAL F MQ +P
Sbjct: 269 SLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKP 328
Query: 71 DEFTIVRILTAYMYC-------KCGDVEK 92
D + LTA + KC D+ K
Sbjct: 329 DGVSFTGALTACSHAGMVDEGLKCFDIMK 357
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 88/186 (47%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y RG + +AR+ F Q+PERD V W MI GY+R AL LF +M
Sbjct: 177 KDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQM 236
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 237 QRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCG 296
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLS 136
++ A V M KD TW +++ GLA+ D F +RPDE+T+V VL
Sbjct: 297 SMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLI 356
Query: 137 ACTHNG 142
AC+H G
Sbjct: 357 ACSHGG 362
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ ++ Y G + A + F M ++D W +++ G E++ +F +M
Sbjct: 282 VVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLK 341
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA-- 116
+RPDE T V +L A + G V+K + M K + ++G A
Sbjct: 342 GKVRPDEITFVAVLIACSH--GGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGL 399
Query: 117 ISDPFPTI-----RPDEVTYVGVLSACTHNG 142
+ + F I P+ V + +LSAC +G
Sbjct: 400 LKEAFEFIDTMKCEPNSVIWRTLLSACRVHG 430
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFT 74
RG + A F Q+P D ++ +I G R+A++L+ M +RPD+ T
Sbjct: 25 RGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLT 84
Query: 75 IVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMI--------VGLAISDPFPTI 124
+L A GD V+ V++ D F A+I +G+A +
Sbjct: 85 FPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRA 144
Query: 125 RPDEVTYVGVLSACTHNGN 143
R D V + +++ C G+
Sbjct: 145 REDAVAWSAMITGCARRGD 163
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DVISWT ++ Y G ++ A + F +P +D V WTAM+ GY + R REAL +F
Sbjct: 201 MLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVF 260
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
MQ + ++ DE T+V +++A MY
Sbjct: 261 ERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYA 320
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVG 133
KCG VE A +V +M ++ +++++MIVG A+ I+P+ VT++G
Sbjct: 321 KCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIG 380
Query: 134 VLSACTHNG 142
VL+AC+H G
Sbjct: 381 VLTACSHAG 389
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 67/199 (33%), Gaps = 77/199 (38%)
Query: 26 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY--- 82
R F Q+ + LWTA+I GY F E++ L+ M+ I P FT +L A
Sbjct: 93 RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY KCG + RV +ML +D +WT++
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212
Query: 112 IVGLA----------ISDPFP---------------------------------TIRPDE 128
IV A + D P ++ DE
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272
Query: 129 VTYVGVLSACTHNGNETFV 147
VT VGV+SAC G +
Sbjct: 273 VTLVGVISACAQLGAAKYA 291
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+ + ++ Y G V+ A + F +M ER+ +++MI G+ A+ LF EM
Sbjct: 308 NVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEML 367
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA- 116
+ I+P+ T + +LTA + G VE+ Q++ M +D + ++G A
Sbjct: 368 KTEIKPNRVTFIGVLTACSH--AGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAG 425
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
+ + ++ P + +L AC +GN
Sbjct: 426 RLEEALNLVKMMPMNPHGGVWGALLGACRIHGN 458
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats.
Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +VS Y G V+ AR+ F +MPER+ V WT+MI G + RF+EA+ LF +MQ + ++
Sbjct: 235 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 294
Query: 70 PDEFTIV---------------RILTAY------------------MYCKCGDVEKAQRV 96
D+ TI R L AY MY KCGDV KA ++
Sbjct: 295 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 354
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSACTHNG 142
+ ++D FTWT MI+G A++ D F + P+EV ++GVL+AC+H G
Sbjct: 355 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGG 413
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 28/159 (17%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDY---------VLWTAMIDGYLRVNRFRE 55
DV+SW I++GYI G + A Q F QM + VL G ++V
Sbjct: 160 DVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCH 219
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
AL + + + + MY KCG VE+A+RV +M ++ WT+MI G
Sbjct: 220 ALVVLNGFEIN-------CYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGC 272
Query: 116 AISDPFPT------------IRPDEVTYVGVLSACTHNG 142
S F ++ D+ T V+S+C G
Sbjct: 273 TQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMG 311
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRP 70
++ Y G V+ A Q F + +RD WT MI G+ EAL LF +M+ + + P
Sbjct: 338 LIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMP 397
Query: 71 DEFTIVRILTAYMYCKCGDV--------EKAQRVLRKMLRKDKFTWTAMIVG----LAIS 118
+E + +LTA C G + + +V + R + + ++G LA +
Sbjct: 398 NEVIFLGVLTA---CSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEA 454
Query: 119 DPFPT---IRPDEVTYVGVLSACTHNG 142
+ F + PD V + +L AC +G
Sbjct: 455 EQFIKDMPVAPDVVVWRSLLFACRASG 481
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW ++SGY+ G ++ AR+ F + P ++ V W AMI GY RF E L LF
Sbjct: 200 MTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLF 259
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + ++PD T+V +L+A MY KC
Sbjct: 260 EDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKC 319
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVL 135
G +EKA V LRKD TW ++I GL+ +P+EVT+V VL
Sbjct: 320 GSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVL 379
Query: 136 SACTHNG 142
SAC+ G
Sbjct: 380 SACSRAG 386
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y + G ++ AR +M ERD V W A++ Y A LF EM
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMT 201
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT- 123
N+ F I Y G +E+A+RV + K+ +W AMI G + + F
Sbjct: 202 ERNVESWNFMISG------YVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEV 255
Query: 124 -----------IRPDEVTYVGVLSACTHNG 142
++PD T V VLSAC H G
Sbjct: 256 LVLFEDMQHAGVKPDNCTLVSVLSACAHVG 285
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 109 bits (272), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISW ++SG+ GQV+ A + F MPE + V W AMI GY + + AL LF
Sbjct: 317 MPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLF 376
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+MQ +++P+ T +L A MY KC
Sbjct: 377 GQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKC 436
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E A++V +M ++D + +AMIVG AI+ F ++PD VT+VGVL
Sbjct: 437 GSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVL 496
Query: 136 SACTHNG 142
SAC H G
Sbjct: 497 SACCHAG 503
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 70/146 (47%), Gaps = 14/146 (9%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V +V Y RG ++ AR+ F +MP+RD V W AMI GY++ +AL LF E+
Sbjct: 197 NVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI- 255
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----AISDP 120
P I Y +CGDVE A + KM ++ +W MI G ++ +
Sbjct: 256 -----PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEA 310
Query: 121 FP--TIRPDE--VTYVGVLSACTHNG 142
F I P+ +++ V+S NG
Sbjct: 311 FKLFQIMPERNVISWNAVISGFAQNG 336
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 64/141 (45%), Gaps = 30/141 (21%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ +VS Y+ G + AR+ F +MP ++ V WTAMI Y R +EAL F EM
Sbjct: 98 QDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEM 157
Query: 64 QTSNIRPDEFTIVRILTAY------------------------------MYCKCGDVEKA 93
Q I+P+ FT IL A MY K G +E A
Sbjct: 158 QDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFA 217
Query: 94 QRVLRKMLRKDKFTWTAMIVG 114
+ + KM ++D +W AMI G
Sbjct: 218 RELFDKMPQRDVVSWNAMIAG 238
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +++GY+ G ++ A + F ++P+RD + W M+ GY + A+ LF
Sbjct: 224 MPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELF 283
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M N+ I Y + G V++A ++ + M ++ +W A+I G A
Sbjct: 284 EKMPEQNLVSWNTMIAG------YVQNGSVKEAFKLFQIMPERNVISWNAVISGFA 333
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ +V Y G ++ AR+ F +M ++D +AMI GY +E+L LF +MQ
Sbjct: 422 DVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQ 481
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISD 119
+ ++PD T V +L+A C G V++ ++ M R T + MI L +
Sbjct: 482 FTGLKPDRVTFVGVLSA--CCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAG 539
Query: 120 PFPT---------IRPDEVTYVGVLSAC-THN 141
F I+PD + +LSAC THN
Sbjct: 540 CFDEANDLINKMPIKPDADMWGSLLSACRTHN 571
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99
+ +++ G L +A L M + + ++ L + +Y K G + +A+RV +
Sbjct: 67 YDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVS-IYVKLGSLVEARRVFDE 125
Query: 100 MLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
M K+ +WTAMI A + I+P+ T+ +L ACT
Sbjct: 126 MPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACT 177
>gi|242038163|ref|XP_002466476.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
gi|241920330|gb|EER93474.1| hypothetical protein SORBIDRAFT_01g008465 [Sorghum bicolor]
Length = 599
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 87/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ISW +VSG+ N G +D+A ++F++ P RD + W A++ GY R F E + LF +M
Sbjct: 291 KDGISWNTMVSGFANAGMLDLASRFFSEAPSRDLISWNALLAGYARYKGFNEVMKLFHDM 350
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
S + PD+ T V +++ M+CKCG+V
Sbjct: 351 LASCVNPDKVTAVTLISVAAGKGSLNHAKSIHGWVVKQFGHQDAFLASALVDMHCKCGNV 410
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+ A V K L KD WTAMI GLA + I P+ VT + VLSAC
Sbjct: 411 KVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWKMQTEAIAPNGVTLLAVLSAC 470
Query: 139 THNG 142
+H G
Sbjct: 471 SHAG 474
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D + +V + G V +A F + ++D LWTAMI G EAL LF +
Sbjct: 391 HQDAFLASALVDMHCKCGNVKVAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFWK 450
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
MQT I P+ T++ +L+A + G +++ R+L M +K
Sbjct: 451 MQTEAIAPNGVTLLAVLSACSH--AGLLDEGCRILDAMKQK 489
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 35/140 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ YI+ G V+ A F D V M+ GY+ +AL F +M + I D
Sbjct: 165 LIKMYIDAGDVETAELMFRSALVLDTVSCNIMLSGYVNEGCSLKALCFFRDMASRGIVAD 224
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+T V +LT MY KCG + A+RV
Sbjct: 225 RYTAVALLTCCGRLKTVLLGRSVHGVIVRRMDAGDNWLILVNALLDMYAKCGRMNAAERV 284
Query: 97 LRKMLRKDKFTWTAMIVGLA 116
+ KD +W M+ G A
Sbjct: 285 FGEASEKDGISWNTMVSGFA 304
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW +++G++ G +D AR+ F QMPE++ V WT MI+G+ + +AL++F
Sbjct: 234 MPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMF 293
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +RP++ T+V L A MY KC
Sbjct: 294 WRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKC 353
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G+++ A RV + KD TW+ MI G AI F I PDEV ++ +L
Sbjct: 354 GNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAIL 413
Query: 136 SACTHNGN 143
+AC+H+GN
Sbjct: 414 TACSHSGN 421
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 20/150 (13%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A + F + +D + W+ MI G+ F +AL F +M+++ I
Sbjct: 344 TALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGIN 403
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD--------KFTWTAMIVG------- 114
PDE + ILTA + G+V++ M R D +T ++G
Sbjct: 404 PDEVIFLAILTACSH--SGNVDQGLNFFESM-RLDYSIEPTMKHYTLIVDLLGRAGRLDE 460
Query: 115 -LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
L+ P I PD V + + AC + N
Sbjct: 461 ALSFIQSMP-INPDFVIWGALFCACRAHKN 489
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+ ++W ++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 78 MEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWF 137
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 138 REMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRC 197
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A++V KM ++ +W ++IVG A + +P+ VT+ G L
Sbjct: 198 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGAL 257
Query: 136 SACTHNG 142
+AC H G
Sbjct: 258 AACNHVG 264
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F +M +R V W ++I G+ E+L F +MQ +P+ T
Sbjct: 194 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTF 253
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV-GLAISDP 120
L A + G VE+ R + M R D ++ + L +
Sbjct: 254 TGALAACNH--VGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQS 311
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC GN T +
Sbjct: 312 MP-MKPNEVVIGSLLAACRTQGNNTVL 337
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV+ W ++ GY+ G++++AR F +MP+R V W MI GY + F+EA+ +F E
Sbjct: 167 DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFRE 226
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + + P+ T+V +L A MY KCG
Sbjct: 227 MQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGS 286
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSA 137
+EKA +V + +++ TW+ +I GLA+ D F + P +VTY+G+LSA
Sbjct: 287 IEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSA 346
Query: 138 CTHNG 142
C+H G
Sbjct: 347 CSHAG 351
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV++W ++ G G++D +R+ F +M R+ V W +MI GY+R RF EA+ LF MQ
Sbjct: 162 DVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQ 221
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+P EFT+V +L A MY KCG ++
Sbjct: 222 EEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSID 281
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
KA +V + +K W ++I+GLA+S ++PD V+++GVL+AC
Sbjct: 282 KALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN 341
Query: 140 HNG 142
H G
Sbjct: 342 HAG 344
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T I+ Y G +D A Q F P++ W ++I G R EA+ LF ++++SN++
Sbjct: 268 TAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLK 327
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI-----VGL---- 115
PD + + +LTA + G V++A+ M K ++ M+ GL
Sbjct: 328 PDHVSFIGVLTACNH--AGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEA 385
Query: 116 -AISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P + PD + + +LS+C GN
Sbjct: 386 EELIKSMP-VNPDAIIWGSLLSSCREYGN 413
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM--------PERDYVLWTAMIDGYLRVNR 52
++N ++ W I+ G+ A F M P+R + + ++ Y ++
Sbjct: 55 IRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQR--LTYPSVFKAYAQLGL 112
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
E L + + D+F IL MY CG + +AQR+ D TW MI
Sbjct: 113 AHEGAQLHGRVIKLGLENDQFIQNTILN--MYVNCGFLGEAQRIFDGATGFDVVTWNTMI 170
Query: 113 VGLA 116
+GLA
Sbjct: 171 IGLA 174
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ISW ++SGY+ G+++ AR F MP++D V W+AMI GY + +RF E L LF EMQ
Sbjct: 354 DQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQ 413
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+PDE +V +++A MY K G VE
Sbjct: 414 IEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVE 473
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACT 139
A V + + K TW A+I+GLA++ F ++ P+E+T+V VL AC
Sbjct: 474 DALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACR 533
Query: 140 HNG 142
H G
Sbjct: 534 HMG 536
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 84/216 (38%), Gaps = 76/216 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ ++ + +G V+ A + F +M ++D V W+A+I Y + + EAL LF
Sbjct: 218 MPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILF 277
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM + I DE ++ +L+A +MY C
Sbjct: 278 KEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSC 337
Query: 88 -------------------------------GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G++EKA+ + M KD +W+AMI G A
Sbjct: 338 EEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYA 397
Query: 117 ISDPF------------PTIRPDEVTYVGVLSACTH 140
D F +PDE V V+SACTH
Sbjct: 398 QQDRFTETLVLFQEMQIEGTKPDETILVSVISACTH 433
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV +++ Y G + AR+ F D V W +M+ GY+ V EA ++
Sbjct: 158 DSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDR 217
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M N+ IV ++ K G+VE+A ++ +M +KD +W+A+I ++ +
Sbjct: 218 MPERNVIASNSMIV------LFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYE 271
Query: 123 T------------IRPDEVTYVGVLSACT 139
I DEV + VLSAC+
Sbjct: 272 EALILFKEMNANGIMVDEVVVLSVLSACS 300
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++I T +++ Y+ G V+ A + F + E+ W A+I G ++L F EM+
Sbjct: 455 NIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMK 514
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK-------FTWTAMIVGLA- 116
+ P+E T V +L A + G V++ R M+++ K + ++G A
Sbjct: 515 EHGVTPNEITFVAVLGACRH--MGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAG 572
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNG-NET 145
+ + P + PD T+ +L AC G NET
Sbjct: 573 MLKEAEELIESMP-MAPDVSTWGALLGACKKYGDNET 608
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 64/186 (34%), Positives = 88/186 (47%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K KD ISW +++G+ N G +D+A ++F P RD + W ++ GY R F + LF
Sbjct: 282 KEKDDISWNTMIAGFANDGMLDLASKFFFDAPCRDLISWNTLLAGYGRCREFAAVMELFN 341
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M +S +RPD+ T V +++A MYCKCG
Sbjct: 342 DMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLASTLVDMYCKCG 401
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLS 136
+V+ A V K L KD WTAMI GLA D F + P+ VT V VLS
Sbjct: 402 NVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFWNMQNEGVAPNGVTLVTVLS 461
Query: 137 ACTHNG 142
AC+H G
Sbjct: 462 ACSHAG 467
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 35/140 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y++ G + A F +P D V M+ GY++ AL LF +M + I D
Sbjct: 158 LIKMYLDAGDAETAEAMFQSVPVPDVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVD 217
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
++ V +L+ MY KCG++ A RV
Sbjct: 218 QYAAVALLSCCGRLKNALLGRSVHGVVVRRMDIKDRGLILSNALLDMYAKCGEMNTAMRV 277
Query: 97 LRKMLRKDKFTWTAMIVGLA 116
+ KD +W MI G A
Sbjct: 278 FGEAKEKDDISWNTMIAGFA 297
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 108 bits (271), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 45/176 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y GQVD AR+ F +M +RD V W+AMI GY + +R +EAL LF EMQ N+
Sbjct: 261 TSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVY 320
Query: 70 PDEFTIVRI------LTAY---------------------------MYCKCGDVEKAQRV 96
P+E T+V + L AY Y KCG ++++ V
Sbjct: 321 PNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEV 380
Query: 97 LRKMLRKDKFTWTAMIVGLAISDP-------FPT-----IRPDEVTYVGVLSACTH 140
++M K+ FTWTA+I GLA + F + ++P++VT++GVLSAC+H
Sbjct: 381 FKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSH 436
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y N GQ+ +AR F MPER V W +M+ GY + + E + LF ++ I D
Sbjct: 162 LIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFD 221
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T++ +L A MY KCG V+ A+++
Sbjct: 222 DVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFD 281
Query: 99 KMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSACTHNG 142
+M ++D W+AMI G A +D + P+EVT V VL +C G
Sbjct: 282 EMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 24/152 (15%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G +D + + F +M ++ WTA+I G + AL F M ++++
Sbjct: 362 TQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVK 421
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD--------KFTWTAMIVGLA----- 116
P++ T + +L+A C + R L +R+D + I+G A
Sbjct: 422 PNDVTFIGVLSA---CSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEE 478
Query: 117 ----ISD-PFPTIRPDEVTYVGVLSACTHNGN 143
I + PFP P+ V + +L++C + N
Sbjct: 479 AYQFIDNMPFP---PNAVVWRTLLASCRAHKN 507
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDV W +V+GY+ G++ AR+ F +MP+R+ + WT +I GY + NR EA+ LF +M
Sbjct: 186 KDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKM 245
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q + PDE ++ +L+A MY K G++
Sbjct: 246 QLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNI 305
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSAC 138
+A V M +K TW+ +I LA+ D F +RP+EVT+V +LSAC
Sbjct: 306 RRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSAC 365
Query: 139 THNG 142
+H G
Sbjct: 366 SHVG 369
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+ ++ Y G + A + F M ++ + W+ +I EA+ +F M+ + +
Sbjct: 292 YNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKV 351
Query: 69 RPDEFTIVRILTAYMYCKCGDV 90
RP+E T V IL+A + DV
Sbjct: 352 RPNEVTFVAILSACSHVGMVDV 373
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 46/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ G ++ Q+D A F QMP R+ V WTAMI Y++ R EA LF
Sbjct: 179 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLF 238
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +++P+EFTIV +L A MY KC
Sbjct: 239 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKC 298
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVTYVGV 134
G ++ A++V M K TW +MI L + ++ PD +T+VGV
Sbjct: 299 GSLQDARKVFDVMQSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVEPDAITFVGV 358
Query: 135 LSACTHNGN 143
LSAC + GN
Sbjct: 359 LSACANTGN 367
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV+ W ++ GY+ G++++AR F +MP+R V W MI GY + F+EA+ +F E
Sbjct: 190 DGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFRE 249
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + + P+ T+V +L A MY KCG
Sbjct: 250 MQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGS 309
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSA 137
+EKA +V + +++ TW+ +I GLA+ D F + P +VTY+G+LSA
Sbjct: 310 IEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSA 369
Query: 138 CTHNG 142
C+H G
Sbjct: 370 CSHAG 374
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 94/184 (51%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++WT ++SGY+N GQV IAR+ F +MPE++ V W A+I GY+R+ F+EAL +F +M
Sbjct: 176 RDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDM 235
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q S R + +IV LTA MY KCG +
Sbjct: 236 QVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCI 295
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
E A V +M +D + +T +I GLA D + P+EVT+V VL+AC
Sbjct: 296 EMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNAC 355
Query: 139 THNG 142
+ G
Sbjct: 356 SRMG 359
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G +++A F +M +RD +T +I G ++ A+ LF MQ
Sbjct: 278 DRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQ 337
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
+ P+E T V +L A + G V++ R+ M + + ++G A
Sbjct: 338 DEGVVPNEVTFVCVLNA--CSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAG 395
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
I + +R PD T +L AC +G+
Sbjct: 396 KIEEAKQVVREMPLQPDSYTLGALLDACRVHGD 428
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 36/147 (24%)
Query: 4 KDVISWTDIVSGYIN---RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
KD + I+S + + R + A + F + + +W M+ ++ N A +L+
Sbjct: 41 KDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLY 100
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M SN P+ FT ++ A ++Y C
Sbjct: 101 KHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANC 160
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG 114
G ++ A+ + +++D TWT +I G
Sbjct: 161 GFMDLARNMFDMSIKRDVVTWTCLISG 187
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT ++SGY G + A F MP ++ V W AMI GY+ + F +AL +F
Sbjct: 165 MPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVF 224
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M RPD+ T++ IL+A M+ K
Sbjct: 225 HHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAK 284
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CGDVE A+ V M ++ TWT M+ GLA++ +PD+V ++ V
Sbjct: 285 CGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAV 344
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 345 LSACTHGG 352
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++W +V G G +++A F QMP R+ V W +MI GY+R+ R A ++F
Sbjct: 103 MPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIF 162
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M P++ + Y GD++ A+ + M K+ +W AMI G +
Sbjct: 163 YQM------PEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHE 216
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNGN 143
F RPD+ T + +LSAC H G+
Sbjct: 217 FDQALCVFHHMLINGECRPDQTTLISILSACAHLGS 252
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V+ A++ F M +R + WT M+ G + REA+ LF +M +PD+ + +L
Sbjct: 286 GDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVL 345
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK 103
+A + G VE+ +RV +M+++
Sbjct: 346 SACTH--GGLVEEGKRVFDQMVQE 367
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ISW I+SG++ GQ+ AR F +MP R V WTA+I GY R+ + +AL +F
Sbjct: 156 MHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVF 215
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
EMQ + I PDE +I+ +L A +M+C KC
Sbjct: 216 REMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKC 275
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G +++A ++ +M +D +W+ MI GLA I+P+ +T+VG+L
Sbjct: 276 GCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLL 335
Query: 136 SACTHNG 142
SAC H G
Sbjct: 336 SACAHAG 342
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWF 194
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC 254
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A++V M ++ +W ++IVG A + +PD VT+ G L
Sbjct: 255 GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGAL 314
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 315 TACSHVG 321
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 251 YCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTF 310
Query: 76 VRILTA-------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV-GLAISDPF 121
LTA + KC D + R+ D ++ + L +
Sbjct: 311 TGALTACSHVGLVEEGLRYFQIMKC-DYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369
Query: 122 PTIRPDEVTYVGVLSACTHNGN 143
P ++P+EV +L+AC+++GN
Sbjct: 370 P-MKPNEVVIGSLLAACSNHGN 390
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT ++SGY G + A F MP ++ V W AMI GY+ + F +AL +F
Sbjct: 229 MPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVF 288
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M RPD+ T++ IL+A M+ K
Sbjct: 289 HHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAK 348
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CGDVE A+ V M ++ TWT M+ GLA++ +PD+V ++ V
Sbjct: 349 CGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAV 408
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 409 LSACTHGG 416
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 19/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++W +V G G +++A F QMP R+ V W +MI GY+R+ R A ++F
Sbjct: 167 MPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIF 226
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M P++ + Y GD++ A+ + M K+ +W AMI G +
Sbjct: 227 YQM------PEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHE 280
Query: 121 FPTI-------------RPDEVTYVGVLSACTHNGN 143
F RPD+ T + +LSAC H G+
Sbjct: 281 FDQALCVFHHMLINGECRPDQTTLISILSACAHLGS 316
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V+ A++ F M +R + WT M+ G + REA+ LF +M +PD+ + +L
Sbjct: 350 GDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVL 409
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK 103
+A + G VE+ +RV +M+++
Sbjct: 410 SACTH--GGLVEEGKRVFDQMVQE 431
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT ++SG I+ G + AR+ F ++P ++ V WTAMI+GY+R + EAL LF
Sbjct: 186 MRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELF 245
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ NI P+E+T+V ++ A MY KC
Sbjct: 246 KRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC 305
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVL 135
G ++ A V M RK TW +MI L + + F ++PD +T++GVL
Sbjct: 306 GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVL 365
Query: 136 SACTHNGN 143
AC H N
Sbjct: 366 CACVHIKN 373
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
++ Y GQ ++++ F M E+D + W +MI Y + EAL +F M + +R
Sbjct: 1292 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 1351
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
+ T+ +L A MYCKCG VE A++
Sbjct: 1352 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 1411
Query: 98 RKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACTHNG 142
+M K+ +WTAM+ G + D F ++P+ +T+V VL+AC+H G
Sbjct: 1412 DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 1468
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V T I+ Y G+V++A++ F +M E++ WTAM+ GY R +EAL +F +M
Sbjct: 1387 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 1446
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+ ++P+ T V +L A + G VE+ M K
Sbjct: 1447 RAGVKPNYITFVSVLAACSH--AGLVEEGWHWFNAMKHK 1483
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 54/192 (28%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D+ + ++ Y GQ+ AR F ++P R+ V WT+MI GY++ + AL LF +
Sbjct: 1176 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 1235
Query: 64 -------QTSNIRPDEFTIVRILTAY---------------------------------M 83
+N+ D +V +L+A
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVT 130
Y KCG +++V M KD +W +MI A S +R + VT
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355
Query: 131 YVGVLSACTHNG 142
VL AC H G
Sbjct: 1356 LSAVLLACAHAG 1367
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + +ID Y + R AL +F +M+ N+ I +++ CGD+++A+R
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS------CGDLQEARR 212
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLSACTHNG 142
+ ++ K+ +WTAMI G I + P I P+E T V ++ ACT G
Sbjct: 213 IFDEIPSKNVVSWTAMINGY-IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMG 271
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 92/179 (51%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +VS Y G V+ AR+ F +MPER+ V WT+MI G + RF+EA+ LF +MQ + ++
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 70 PDEFTIV---------------RILTAY------------------MYCKCGDVEKAQRV 96
D+ TI R L AY MY KCGDV KA ++
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSACTHNG 142
+ ++D FTWT MI+G A++ D F + P+EV ++GVL+AC+H G
Sbjct: 267 FHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGG 325
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 28/160 (17%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDY---------VLWTAMIDGYLRVNRFR 54
DV+SW I++GYI G + A Q F QM + VL G ++V
Sbjct: 71 SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 130
Query: 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
AL + + + MY KCG VE+A+RV +M ++ WT+MI G
Sbjct: 131 HALVVLNGFEINCYIGSSLV-------SMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183
Query: 115 LAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
S F ++ D+ T V+S+C G
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMG 223
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ ++ Y G V+ A Q F + +RD WT MI G+ EAL LF +
Sbjct: 241 GKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQ 300
Query: 63 MQTSN-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVG 114
M+ + + P+E + +LTA + G VE+ +M R + + ++G
Sbjct: 301 MEGEDKVMPNEVIFLGVLTACSH--GGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLG 358
Query: 115 ----LAISDPFPT---IRPDEVTYVGVLSACTHNG 142
LA ++ F + PD V + +L AC +G
Sbjct: 359 RAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASG 393
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++ + ++W ++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 126 MEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWF 185
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S +RPD I+ L A +YC+C
Sbjct: 186 REMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRC 245
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ V KM ++ +W ++IVG A + +PD VT+ G L
Sbjct: 246 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGAL 305
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 306 TACSHVG 312
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ AR+ F +M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 242 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTF 301
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV-GLAISDP 120
LTA + G VE+ R + M R D ++ + L + +
Sbjct: 302 TGALTACSH--VGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIES 359
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC +GN T +
Sbjct: 360 MP-MKPNEVVIGSLLAACRTHGNNTVL 385
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 89/187 (47%), Gaps = 60/187 (32%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK ++SWT ++ F +MP++D V W AMI GY+ NR +EAL LF
Sbjct: 241 MTNKTMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKEALALF 285
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ NI PDE T+V L+A MY KC
Sbjct: 286 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 345
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G + KA +V +++ ++ TWTA+I GLA+ ++ PDEVT++G+L
Sbjct: 346 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 405
Query: 136 SACTHNG 142
SAC H G
Sbjct: 406 SACCHGG 412
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 84/201 (41%), Gaps = 61/201 (30%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ ++ ++ G +D AR+ F + RD V W +MI+GY+R EAL + E
Sbjct: 111 DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYRE 170
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ I+PDE T++ ++++ MY KCG+
Sbjct: 171 MKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGN 230
Query: 90 VEKAQRVLRKMLRKDKFTWT----------------AMIVG----------LAISDPFPT 123
+E A+++ M K +WT AMI G LA+ +
Sbjct: 231 LESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQA 290
Query: 124 --IRPDEVTYVGVLSACTHNG 142
I PDEVT V LSAC+ G
Sbjct: 291 MNINPDEVTMVSCLSACSQLG 311
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ A Q F ++P R+ + WTA+I G A+ F EM +++
Sbjct: 336 TALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVM 395
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PDE T + +L+A C G VE+ ++ +M K
Sbjct: 396 PDEVTFLGLLSA--CCHGGLVEEGRKYFSQMSSK 427
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT ++SG I+ G + AR+ F ++P ++ V WTAMI+GY+R + EAL LF
Sbjct: 186 MRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELF 245
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ NI P+E+T+V ++ A MY KC
Sbjct: 246 KRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKC 305
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVL 135
G ++ A V M RK TW +MI L + + F ++PD +T++GVL
Sbjct: 306 GSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVL 365
Query: 136 SACTHNGN 143
AC H N
Sbjct: 366 CACVHIKN 373
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
++ Y GQ ++++ F M E+D + W +MI Y + EAL +F M + +R
Sbjct: 2165 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 2224
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
+ T+ +L A MYCKCG VE A++
Sbjct: 2225 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 2284
Query: 98 RKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACTHNG 142
+M K+ +WTAM+ G + D F ++P+ +T+V VL+AC+H G
Sbjct: 2285 DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 2341
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V T I+ Y G+V++A++ F +M E++ WTAM+ GY R +EAL +F +M
Sbjct: 2260 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 2319
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
+ ++P+ T V +L A + G VE+ M K + + + G A
Sbjct: 2320 RAGVKPNYITFVSVLAACSH--AGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAG 2377
Query: 117 -ISDPFPTI-----RPDEVTYVGVLSACTHNGN 143
+++ + I +PD V + +L AC + N
Sbjct: 2378 CLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKN 2410
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 72/192 (37%), Gaps = 54/192 (28%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D+ + ++ Y GQ+ AR F ++P R+ V WT+MI GY++ + AL LF +
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 2108
Query: 64 -------QTSNIRPDEFTIVRILTAY---------------------------------M 83
+N+ D +V +L+A
Sbjct: 2109 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 2168
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVT 130
Y KCG +++V M KD +W +MI A S +R + VT
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228
Query: 131 YVGVLSACTHNG 142
VL AC H G
Sbjct: 2229 LSAVLLACAHAG 2240
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 20/120 (16%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + +ID Y + R AL +F +M+ N+ I +++ CGD+++A+R
Sbjct: 159 DVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS------CGDLQEARR 212
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLSACTHNG 142
+ ++ K+ +WTAMI G I + P I P+E T V ++ ACT G
Sbjct: 213 IFDEIPSKNVVSWTAMINGY-IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMG 271
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +VS Y G V+ AR+ F +MPER+ V WT+MI G + RF+EA+ LF +MQ + ++
Sbjct: 147 SSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVK 206
Query: 70 PDEFTIV---------------RILTAY------------------MYCKCGDVEKAQRV 96
D+ TI R L AY MY KCGDV KA ++
Sbjct: 207 ADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQI 266
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSACTHNG 142
R + ++D FTWT MI+G A++ D F + P+EV ++GVL+AC+H G
Sbjct: 267 FRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGG 325
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 28/160 (17%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDY---------VLWTAMIDGYLRVNRFR 54
DV+SW I++GYI G + A Q F QM + VL G ++V
Sbjct: 71 SDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLC 130
Query: 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
AL + + + + MY KCG VE+A+RV +M ++ WT+MI G
Sbjct: 131 HALVVLNGFEIN-------CYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAG 183
Query: 115 LAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
S F ++ D+ T V+S+C G
Sbjct: 184 CTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMG 223
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 17/156 (10%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ ++ Y G V+ A Q F + +RD WT MI G+ EAL LF +
Sbjct: 241 GKELSVKNSLIDMYSKCGDVNKAYQIFRGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQ 300
Query: 63 MQTSN-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVG 114
M+ + + P+E + +LTA + G VE+ +M R + + ++G
Sbjct: 301 MEGEDKVMPNEVIFLGVLTACSH--GGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLG 358
Query: 115 ----LAISDPFPT---IRPDEVTYVGVLSACTHNGN 143
LA ++ F + PD V + +L AC +G
Sbjct: 359 RAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQ 394
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 88/190 (46%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SWT ++ R +D AR +F Q+PE+ + W AMI Y++ RF EAL L+
Sbjct: 272 MPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLY 331
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ + PDEFT+ +L+A MY +C
Sbjct: 332 NRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARC 391
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
G V+ A + +M K+ +W A+I LA +SD FP PDE+T+V
Sbjct: 392 GQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVSDAFP---PDEITFV 448
Query: 133 GVLSACTHNG 142
+LSAC H G
Sbjct: 449 ALLSACNHGG 458
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 33/138 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y + G + +R++F +M +R+ V W +MI+GY + REA +LF M+ + D
Sbjct: 151 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLAD 210
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT+V +L A MY KCGD+ A
Sbjct: 211 EFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFD 270
Query: 99 KMLRKDKFTWTAMIVGLA 116
M K+ +WT+M+ LA
Sbjct: 271 MMPFKNAVSWTSMLCALA 288
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N V + ++ Y GQVD A F++MP ++ + W A+I R ++AL F
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMIVGL-- 115
M + PDE T V +L+A C G + +A + + +R K A +V L
Sbjct: 435 MVSDAFPPDEITFVALLSA---CNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491
Query: 116 ----------AISDPFPTIRPDEVTYVGVLSACTHNGN 143
I D P +RPD V + +L AC +G+
Sbjct: 492 RGGQLAKAVDLIKD-MP-MRPDVVVWGALLGACRIHGH 527
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 45/172 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V ARQ F ++P+ D ++ ++I Y + +EAL L M I P+EFT+ +L
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A + Y G + ++R +M+ ++
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177
Query: 107 TWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNGNETF 146
+W +MI G A + F +R DE T V +L AC+ GN F
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEF 229
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +SW ++ GY G++++A + F MPER+ + WT+MI G + + +EAL LF M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
QT+ I+ D +V L A MY KCGD+
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
E+A V RKM K WTAMI G AI + P+++T+ G+L+AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361
Query: 139 THNG 142
+H G
Sbjct: 362 SHAG 365
>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
Length = 580
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K KD++SW IV+G G+++ AR +F QMP RD V W +++ GY F L
Sbjct: 227 LKEKDIVSWNMIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELI 286
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + PD T++ +++A MYCKC
Sbjct: 287 VDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKC 346
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPFPTIRPDEVTYVGVLS 136
G +E+A RV +++ +KD WT MI GLA S+ + PD+VT+V VLS
Sbjct: 347 GSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSVLS 406
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 407 ACSHSG 412
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 35/136 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y+ G V +A Q F +MP D V + MI GY + EA+ LF EM + PDEFTI
Sbjct: 108 YLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTI 167
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
+ +L + MY KC VE A R +
Sbjct: 168 LGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGAL 227
Query: 101 LRKDKFTWTAMIVGLA 116
KD +W ++ G A
Sbjct: 228 KEKDIVSWNMIVAGCA 243
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM------PERDYVLWTAMIDGYLRVNRFR 54
M + D++S+ ++ GY +G A + F +M P+ +L + G L +F
Sbjct: 124 MPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFG 183
Query: 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYC----------------------------- 85
+A+ + E + I + +L Y+ C
Sbjct: 184 KAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCA 243
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR------------PDEVTYVG 133
K G++E+A+ +M +D +W +++ G A F +++ PD VT +
Sbjct: 244 KVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMIS 303
Query: 134 VLSACTHNG 142
++SA T +G
Sbjct: 304 LVSAATESG 312
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +SW ++ GY G++++A + F MPER+ + WT+MI G + + +EAL LF M
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
QT+ I+ D +V L A MY KCGD+
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
E+A V RKM K WTAMI G AI + P+++T+ G+L+AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361
Query: 139 THNG 142
+H G
Sbjct: 362 SHAG 365
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 108 bits (269), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 46/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ G ++ Q+D A F QMP R+ V WTAMI Y++ R EA LF
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +++P+EFTIV +L A MY KC
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVTYVGV 134
G ++ A++V M K TW +MI L + ++ PD +T+VGV
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359
Query: 135 LSACTHNGN 143
LSAC + GN
Sbjct: 360 LSACANTGN 368
>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 535
Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 87/189 (46%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SW ++ YI G ++ AR+ F MP+RD V W ++I G + V + A+ LF
Sbjct: 210 MPHKNVVSWNTVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLF 269
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ + +RP E T++ +L A MY KC
Sbjct: 270 SEMQNAEVRPTEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYSKC 329
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI--------------SDPFPTIRPDEVTYVG 133
G + A V M K W AMIVGLA+ T+RP+ VT++G
Sbjct: 330 GKLNSAWEVFNGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFLG 389
Query: 134 VLSACTHNG 142
VL AC+H G
Sbjct: 390 VLIACSHKG 398
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V +A+ F ++ R V W MI Y RVN + A L M N+ I
Sbjct: 163 YSQCGLVHVAQHLFDEISNRSLVSWNIMISAYDRVNDSKSADYLLESMPHKNVVSWNTVI 222
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISD-----------PFPT 123
R Y + GD+E A+RV + M ++D +W ++I G +++ D
Sbjct: 223 GR------YIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAE 276
Query: 124 IRPDEVTYVGVLSACTHNG 142
+RP EVT + VL AC G
Sbjct: 277 VRPTEVTLISVLGACAETG 295
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+SW+ ++SGY G VD AR +F + PE+D +W AMI GY++ + F+E+L LF MQ
Sbjct: 172 NVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQ 231
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
++I PDE V IL+A MY KCG++
Sbjct: 232 LTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNL 291
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSAC 138
E A+R+ M +D W AMI G+A+ ++PD++T++ V +AC
Sbjct: 292 ELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTAC 351
Query: 139 THNG 142
+++G
Sbjct: 352 SYSG 355
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 66/194 (34%), Gaps = 76/194 (39%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A + F Q+ ++ +I +L N+F+ AL +F +M S ++PD +TI +L A
Sbjct: 60 ACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGT 119
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKM----------- 100
MYC GDV A+ V ++
Sbjct: 120 FHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVM 179
Query: 101 --------------------LRKDKFTWTAMIVGLAISDPFPT------------IRPDE 128
KDK W AMI G + F I PDE
Sbjct: 180 ISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDE 239
Query: 129 VTYVGVLSACTHNG 142
+V +LSAC H G
Sbjct: 240 SIFVSILSACAHLG 253
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ISW +V+G+ N G +D+A +YF + P RD + W A++ GY R F + LF +M
Sbjct: 178 RDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDM 237
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
S++ PD+ T V +++A MYCKCG +
Sbjct: 238 LASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSI 297
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSAC 138
+ A V K + KD WTAMI GLA D F ++ P+ VT V VLSAC
Sbjct: 298 KLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSAC 357
Query: 139 THNG 142
+H G
Sbjct: 358 SHAG 361
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y++ G V+ A F P D V M+ GY++ +AL F M + I D
Sbjct: 52 LIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVD 111
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
++T V +L MY KCG++ A RV
Sbjct: 112 QYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRV 171
Query: 97 LRKMLRKDKFTWTAMIVGLA 116
+ +D +W M+ G A
Sbjct: 172 FDEAGERDGISWNTMVAGFA 191
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ISW +V+G+ N G +D+A +YF + P RD + W A++ GY R F + LF +M
Sbjct: 295 RDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSATMILFHDM 354
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
S++ PD+ T V +++A MYCKCG +
Sbjct: 355 LASSVIPDKVTAVTLISAVAGKGTLNSARSVHGWVVKEHGTQDSFLASALVDMYCKCGSI 414
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSAC 138
+ A V K + KD WTAMI GLA D F ++ P+ VT V VLSAC
Sbjct: 415 KLAYAVFEKAVDKDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPNGVTLVAVLSAC 474
Query: 139 THNG 142
+H G
Sbjct: 475 SHAG 478
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 35/140 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y++ G V+ A F P D V M+ GY++ +AL F M + I D
Sbjct: 169 LIKMYLDAGDVEAAEAMFRCAPTADAVSCNIMLSGYVKGGCSGKALRFFRGMASRGIGVD 228
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
++T V +L MY KCG++ A RV
Sbjct: 229 QYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRV 288
Query: 97 LRKMLRKDKFTWTAMIVGLA 116
+ +D +W M+ G A
Sbjct: 289 FDEAGERDGISWNTMVAGFA 308
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+++ V SW +VSG G V AR+ F M E+D + W++MIDGY++ ++EAL +F
Sbjct: 221 MEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVF 280
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ IRP +F + +L A MY KC
Sbjct: 281 NVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAKC 340
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++ A V M K+ FTW AMI GLA+ +R +E+T+VG+L
Sbjct: 341 GRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRSNEITFVGLL 400
Query: 136 SACTHNG 142
+AC H G
Sbjct: 401 NACAHKG 407
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G++D+A F M E++ W AMI G R +A+ LF +MQ
Sbjct: 326 DAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQ 385
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+R +E T V +L A + G V++ +L M
Sbjct: 386 KEKVRSNEITFVGLLNACAH--KGMVDEGLNILDSM 419
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + AR+ + E D + + AMIDGY + A LF +M+ ++ +
Sbjct: 174 YATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMV 233
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------T 123
+ K G V++A+ + M KD+ +W++MI G +
Sbjct: 234 SGL------AKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEEK 287
Query: 124 IRPDEVTYVGVLSACTHNG 142
IRP + VL+AC + G
Sbjct: 288 IRPKKFVLSSVLAACANLG 306
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 90/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ISW ++SGY+ G+++ A+ F M ++D V W+AMI GY + +RF E L LF EMQ
Sbjct: 224 DQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQ 283
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++PDE T+V +++A MY K G VE
Sbjct: 284 LDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNGLKINVILGTTLIDMYMKFGCVE 343
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACT 139
A V M K TW A+I+GLA++ D F ++ P+E+T+V VL AC
Sbjct: 344 DALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMKDCGVVPNEITFVAVLVACR 403
Query: 140 HNG 142
H G
Sbjct: 404 HMG 406
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 86/212 (40%), Gaps = 79/212 (37%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++SW I++G +G V A + F++M ++D V W+A+I GY + R+ EAL F +M
Sbjct: 95 DLVSWNSILAG---KGDVTEAYRLFSEMCKKDLVSWSALISGYEQNGRYEEALVTFGKMN 151
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKC---- 87
I DE +V +L+A +MY C
Sbjct: 152 AYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIGIESYVNLQNALIHMYSSCREID 211
Query: 88 ---------------------------GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
G++EKA+ + M KD +W+AMI G A D
Sbjct: 212 SAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFDIMNDKDLVSWSAMISGYAQHDR 271
Query: 121 FPT------------IRPDEVTYVGVLSACTH 140
F ++PDE T V V+SACTH
Sbjct: 272 FAETLALFQEMQLDGVKPDETTLVSVVSACTH 303
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T ++ Y+ G V+ A + F M E+ W A+I G +L F EM+
Sbjct: 325 NVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFSEMK 384
Query: 65 TSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRKDK 105
+ P+E T V +L A C+ G VE+ + M+++ K
Sbjct: 385 DCGVVPNEITFVAVLVA---CRHMGLVEEGRCHFSSMIQEHK 423
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +S+T +++GY RG +D AR+ F ++P RD V W AMI GY + RF EAL F EM
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +N+ P+E T+V +L+A MY KCGD+
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
+KA+ + + KD +W MI G + + + + P++VT+V +L AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375
Query: 139 THNG 142
+ G
Sbjct: 376 AYLG 379
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D AR F + E+D + W MI GY +N ++EAL LF +MQ SN+ P+
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
+ T V IL A MY KCG++E A++V
Sbjct: 365 DVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Query: 98 RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
M K +W AMI GLA+ + F +R PD++T+VGVLSAC+H G
Sbjct: 425 AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT ++ Y G ++ A+Q FA M + W AMI G AL LF +M+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP- 122
PD+ T V +L+A + G VE ++ M+ + + MI L + F
Sbjct: 464 EPDDITFVGVLSACSH--AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDE 521
Query: 123 --------TIRPDEVTYVGVLSACTHNGN 143
++PD + +L AC +GN
Sbjct: 522 AEALMKNMEMKPDGAIWGSLLGACRVHGN 550
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +S+T +++GY RG +D AR+ F ++P RD V W AMI GY + RF EAL F EM
Sbjct: 196 RDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEM 255
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +N+ P+E T+V +L+A MY KCGD+
Sbjct: 256 KRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDL 315
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
+KA+ + + KD +W MI G + + + + P++VT+V +L AC
Sbjct: 316 DKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPAC 375
Query: 139 THNG 142
+ G
Sbjct: 376 AYLG 379
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D AR F + E+D + W MI GY +N ++EAL LF +MQ SN+ P+
Sbjct: 305 LIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPN 364
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
+ T V IL A MY KCG++E A++V
Sbjct: 365 DVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF 424
Query: 98 RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
M K +W AMI GLA+ + F +R PD++T+VGVLSAC+H G
Sbjct: 425 AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAG 481
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT ++ Y G ++ A+Q FA M + W AMI G AL LF +M+
Sbjct: 404 WTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGF 463
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP- 122
PD+ T V +L+A + G VE ++ M+ + + MI L + F
Sbjct: 464 EPDDITFVGVLSACSH--AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDE 521
Query: 123 --------TIRPDEVTYVGVLSACTHNGN 143
++PD + +L AC +GN
Sbjct: 522 AEALMKNMEMKPDGAIWGSLLGACRVHGN 550
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 87/179 (48%), Gaps = 45/179 (25%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW ++ GY G VD+AR F QM +RD V + ++I GY+ R REAL LF +M+ +
Sbjct: 306 SWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHD 365
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
+R D FT+V +LTA MY KCG VE+A
Sbjct: 366 LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEAS 425
Query: 95 RVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHN 141
V + M +D TW+AMI GLA + +P+ VTY+ +L+AC+H+
Sbjct: 426 LVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHS 484
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ++WT ++SG G +D A P R+ + WT +I GY R R EA+ F M
Sbjct: 169 KDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ I PDE T++ +L+A MY KCGD+
Sbjct: 229 LSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDI 288
Query: 91 EKAQRVLRKMLR-KDKFTWTAMIVG 114
+A V + R + +W AMI G
Sbjct: 289 GRAWEVFDALGRGRRPQSWNAMIDG 313
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y+ G+V+ A F M RD W+AMI G + AL F M+
Sbjct: 404 DIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMK 463
Query: 65 TSNIRPDEFTIVRILTA 81
+P+ T + ILTA
Sbjct: 464 VDGFQPNSVTYIAILTA 480
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +VSGY G ++ AR+ F QM ERD + W AMI GY++ ++ +A+ +F
Sbjct: 174 MPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVF 233
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
EMQ + PD+ T+V +L+A MY K
Sbjct: 234 HEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAK 293
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGV 134
CG +E+A+R+ M +D +W+ MI G + F ++P+EVT++G+
Sbjct: 294 CGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGL 353
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 354 LSACSHAG 361
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 57/150 (38%), Gaps = 50/150 (33%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y + A Q F +MP RD V W M+ GY
Sbjct: 152 TSLVDMYFKFREPASAGQVFDEMPLRDVVSWNTMVSGY---------------------- 189
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------- 122
C CGD+E A+RV +ML +D +W AMI G + +
Sbjct: 190 ---------------CLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFH 234
Query: 123 ------TIRPDEVTYVGVLSACTHNGNETF 146
+ PD+VT V VLSAC H G F
Sbjct: 235 EMQKVGGVVPDDVTLVSVLSACAHVGALDF 264
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ AR+ F M ERD + W+ MI G EA + +M ++P+
Sbjct: 287 LIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPN 346
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
E T + +L+A + G V+K + +M+++
Sbjct: 347 EVTFMGLLSACSH--AGLVDKGIELFSRMIQE 376
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT ++ G VD R +F QMPER+ V W AMI Y++ R E L L+
Sbjct: 276 MPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLY 335
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M++ I PDEFT+ +L+A MY +C
Sbjct: 336 NRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNFNDPGVTLLNSLLDMYARC 395
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
G V+ A + +M K+ +W +I LA +SD F PDE+T+V
Sbjct: 396 GQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFRTMVSDAF---SPDEITFV 452
Query: 133 GVLSACTHNG 142
G+LSAC+H G
Sbjct: 453 GLLSACSHGG 462
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/200 (26%), Positives = 71/200 (35%), Gaps = 76/200 (38%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + +R++F +M +R+ V W MI GY + EA LF EM+ + D FT+V +L
Sbjct: 163 GSLRDSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLL 222
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
A MY KCGD+ A R M K+
Sbjct: 223 FACSSEGNLEVGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVV 282
Query: 107 TWTAMIVGL-------AISDPFPT------------------------------------ 123
TWT+M+ A+ D F
Sbjct: 283 TWTSMLCAQAKHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLG 342
Query: 124 IRPDEVTYVGVLSACTHNGN 143
I PDE T GVLSAC NG+
Sbjct: 343 ITPDEFTLAGVLSACGQNGD 362
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KDV+SW I+ GY Q+ A++ F M R+ V W MI Y++ F A+++F +
Sbjct: 136 KDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQ 195
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ+ N++P E T+V +L+A MYCKCG
Sbjct: 196 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 255
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+E A V + RK+ F W ++IVGL ++ I+PD VT+VG+LS
Sbjct: 256 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 315
Query: 138 CTHNG 142
C+H+G
Sbjct: 316 CSHSG 320
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 64/182 (35%), Gaps = 50/182 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+I T ++ Y G + A++ F MP RD V AMI + EA LF M
Sbjct: 44 DMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMT 103
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF--- 121
N + ++T YCK GD+ A+ + KD +W A+I G S
Sbjct: 104 ERN----SCSWNSMITC--YCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAA 157
Query: 122 -----------------------------------------PTIRPDEVTYVGVLSACTH 140
++P EVT V +LSAC H
Sbjct: 158 QELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 217
Query: 141 NG 142
G
Sbjct: 218 LG 219
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +SW+ ++SGY G VD AR +F + PE+D +W AMI GY++ + F+E L LF
Sbjct: 166 MPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+Q +++ PDE V IL+A MY KC
Sbjct: 226 RLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAKC 285
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++E A+R+ M +D W AMI GLA+ + I+PD++T++ V
Sbjct: 286 GNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPDDITFIAVF 345
Query: 136 SACTHNG 142
+AC+++G
Sbjct: 346 TACSYSG 352
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G +++A++ F MPERD V W AMI G AL +F EM+ + I+
Sbjct: 276 TSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIK 335
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD+ T + + TA Y G + ++L KM
Sbjct: 336 PDDITFIAVFTACSY--SGMAHEGLQLLDKM 364
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 45/178 (25%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W I+ GY G VDIAR F QM RD + + +MI GY+ R R+AL LF +++ +
Sbjct: 305 WNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGM 364
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
R D FT+V +LTA MY KCG V++A
Sbjct: 365 RADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATA 424
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V +M +D TW+AMI GLA + + F ++ P VTY+ VL+AC+H+
Sbjct: 425 VFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHS 482
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD + W ++ G + G +D AR+ Q PER+ V WT++I GY R R +A+ F M
Sbjct: 167 KDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCM 226
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + PDE ++ L+A MY KCGD+
Sbjct: 227 LSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDI 286
Query: 91 EKAQRVLRKMLRKDK-FTWTAMIVG 114
+AQ V + R K W +I G
Sbjct: 287 AQAQAVFDAVGRGQKPEPWNVIIDG 311
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV T +V Y+ G+VD A F +M ERD W+AMI G +AL F +M
Sbjct: 401 EDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQM 460
Query: 64 QTSNIRPDEFTIVRILTA 81
+ +P T + +LTA
Sbjct: 461 KRDGFQPTSVTYIAVLTA 478
>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 586
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 48/186 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW +VSGY G + AR+ FA+MPER+ V W+AM+D +R F EAL +F M
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
RPD +V +L A MYCKCG
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFPTIR--------PDEVTYVGVLS 136
+E A +V + R+D W AMI GLA++ R P+E T++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 137 ACTHNG 142
ACTH G
Sbjct: 324 ACTHTG 329
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T +V Y G ++ A Q F + RD VLW AMI G L +N + E AL LF M
Sbjct: 253 TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG-LAMNGYGERALELFRRMLQKGF 311
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T + +L A + G V++ +RV + M
Sbjct: 312 MPNESTFIAVLCACTH--TGRVDEGKRVFKSM 341
>gi|255569325|ref|XP_002525630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535066|gb|EEF36748.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 765
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD+ SWT ++ GY R D AR F MP +D W +I Y + + +EAL +F
Sbjct: 294 MEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGKPKEALAIF 353
Query: 61 PEMQTSNI-RPDEFTIVRILTAY---------------------------------MYCK 86
E+Q S +PDE T+V L+A MY K
Sbjct: 354 HELQLSKTAKPDEVTLVSTLSACAQLGAIDIGGWIHVYIKKQDIKLNCHLTTSLIDMYSK 413
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CG+VEKA + + R+D F W+AMI GLA+ D F +RP+ VT+ +
Sbjct: 414 CGEVEKALDIFYSVDRRDVFVWSAMIAGLAMHGRGRAAIDLFFEMQETKVRPNAVTFTNL 473
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 474 LCACSHTG 481
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 82/215 (38%), Gaps = 77/215 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y + G +D A F ++ E+D V W +MI G++ +AL LF M+
Sbjct: 166 DLFILNSLIHCYASCGDLDSAYSVFVKIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMK 225
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+RP++ T+V +L+A MY K G +E
Sbjct: 226 AENVRPNDVTMVGVLSACAKKMDLEFGRRVCHYIERNGINVNLTVSNAMLDMYVKNGSLE 285
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFP------------------- 122
A+R+ KM KD F+WT MI G A + D P
Sbjct: 286 DARRLFDKMEEKDIFSWTTMIDGYAKRRDFDAARSVFDAMPRQDISAWNVLISAYEQDGK 345
Query: 123 ---------------TIRPDEVTYVGVLSACTHNG 142
T +PDEVT V LSAC G
Sbjct: 346 PKEALAIFHELQLSKTAKPDEVTLVSTLSACAQLG 380
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 46/186 (24%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPD 71
V+ + +D AR+ F ++ + + W +I + +L +F M S P+
Sbjct: 72 VAALSSFSSLDYARKVFEEISQPNLYTWNTLIRAFASSPEPIHSLLIFIRMLYDSPDFPN 131
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+FT ++ A + Y CGD++ A V
Sbjct: 132 KFTFPFVIKAAAGVASLPFSQAIHGMAIKASLGSDLFILNSLIHCYASCGDLDSAYSVFV 191
Query: 99 KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNGNETF 146
K+ KD +W +MI G + +RP++VT VGVLSAC + F
Sbjct: 192 KIEEKDVVSWNSMIKGFVLGGCPDKALELFQLMKAENVRPNDVTMVGVLSACAKKMDLEF 251
Query: 147 VINSCN 152
C+
Sbjct: 252 GRRVCH 257
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 90/191 (47%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ SW I++ G VD+AR FA MPER+ + W+ MI+GY+R +++EAL LF
Sbjct: 125 IPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALF 184
Query: 61 PEMQ---TSNIRPDEFTIVRILTAY---------------------------------MY 84
EMQ +++RP+EFT+ +L A MY
Sbjct: 185 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMY 244
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTY 131
KCG VEKA V + KD W+AMI GLA+ +RP+ VT+
Sbjct: 245 AKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTF 304
Query: 132 VGVLSACTHNG 142
+ V AC H G
Sbjct: 305 LAVFCACVHGG 315
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV+ T ++ Y G V+ A F+ + P +D + W+AMI G E + LF +M
Sbjct: 233 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM 292
Query: 64 QTSNIRPDEFTIVRILTAYMYCKC---GDVEKAQRVLRKM 100
+RP+ T + + +C C G V + + LR+M
Sbjct: 293 INQGVRPNAVTFLAV-----FCACVHGGLVSEGKDYLRRM 327
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 96/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+V+SWT +++ Y +G V+ AR+ F QMPE++ V W +MI Y++ + REAL LF
Sbjct: 250 MPNKNVVSWTSMITAYAKQGLVEYARKSFDQMPEKNVVSWNSMISSYVQGGQCREALDLF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + + P+E T++ +L+A MY KC
Sbjct: 310 HEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTSSMYSVTLCNSLIDMYAKC 369
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G + A V +M K+ +W +I LA+ + F ++ PDE+T++G+L
Sbjct: 370 GALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFRKMQAAGVWPDEITFMGLL 429
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 430 SACSHSG 436
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 33/138 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ YI G + AR+ F M ER V W +MI GY ++ +E LF EM+ D
Sbjct: 129 LINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFKEMREIGTEAD 188
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+FT+V +L MY KCG + A+RV +
Sbjct: 189 DFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAKCGALVLAERVFQ 248
Query: 99 KMLRKDKFTWTAMIVGLA 116
+M K+ +WT+MI A
Sbjct: 249 QMPNKNVVSWTSMITAYA 266
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQVD A + F +MPERD + WTAMI G+++ EAL F
Sbjct: 132 MEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWF 191
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + PD I+ L A +YC+C
Sbjct: 192 REMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRC 251
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A++V M ++ +W ++IVG A + +PD VT+ G L
Sbjct: 252 GCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGAL 311
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 312 TACSHVG 318
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 248 YCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTF 307
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKD-----KFTWTAMIVGL-----------AISD 119
LTA + G VE+ + +M++ D + +V L + +
Sbjct: 308 TGALTACSH--VGLVEEGFQYF-QMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVE 364
Query: 120 PFPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC ++GN T +
Sbjct: 365 SMP-MKPNEVVIGSLLAACRNHGNHTIL 391
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +++++ T ++SGY G+V+ AR F QM E+D V W+AMI GY ++ +EAL LF
Sbjct: 9 ISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLF 68
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I+PD+ TI+ +++A MY KC
Sbjct: 69 SEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKC 128
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G++ A+ V KM ++ +WT+MI AI I+P+ VT+VGVL
Sbjct: 129 GNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVL 188
Query: 136 SACTHNG 142
AC+H G
Sbjct: 189 YACSHAG 195
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 19/149 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + AR F +M R+ + WT+MI+ + AL F +M+ NI+P+
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG---------------LA 116
T V +L Y G VE+ +R M + T G L
Sbjct: 181 GVTFVGVL--YACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALE 238
Query: 117 ISDPFPTIRPDEVTYVGVLSACT-HNGNE 144
+ + P + P+ V + +++AC H NE
Sbjct: 239 LVETMP-LAPNVVIWGSLMAACQIHGENE 266
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV +V Y+ G + AR+ F +MP ++ V W +MI G + +F+E+L +F +
Sbjct: 259 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 318
Query: 63 MQTSNIRPDEFTIVRILT---------------AY------------------MYCKCGD 89
MQ ++PD+ T+V +L AY MY KCG
Sbjct: 319 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 378
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+++A V + M RKD +++TAMIVGLA+ P I PDEVT+VGVL+A
Sbjct: 379 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 438
Query: 138 CTHNG 142
C+H G
Sbjct: 439 CSHVG 443
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
AR+ F P+RD V WT MI GY+++ RE + LF EM N++ D T+V +L++
Sbjct: 179 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCAR 238
Query: 83 --------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY KCGD A++V ++M K+ +W +
Sbjct: 239 LGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNS 298
Query: 111 MIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
MI GLA F ++PD+VT V VL++C + G
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLG 342
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G +D A F M +D +TAMI G + +AL LF EM I PD
Sbjct: 369 LVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPD 428
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA--ISDPFP 122
E T V +LTA + G VE+ ++ M LR + M+ +G A I++
Sbjct: 429 EVTFVGVLTACSH--VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEE 486
Query: 123 TIR-----PDEVTYVGVLSACTHNG 142
IR PD +L AC +G
Sbjct: 487 FIRNMPIEPDAFVLGALLGACKIHG 511
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT ++ G VD AR +F QMPER+ + W AMI Y++ RF E L L+
Sbjct: 270 MPIKNVVSWTSMLCALAKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLY 329
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M++ + PDE T+ +L+ + MY +C
Sbjct: 330 NRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQDSFSDPGVTVLNSLIDMYARC 389
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
G V+ + + +M K+ +W +I LA +SD F PDE+T+V
Sbjct: 390 GQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFFRAMVSDAF---SPDEITFV 446
Query: 133 GVLSACTHNG 142
G+LSAC+H G
Sbjct: 447 GLLSACSHGG 456
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 34/131 (25%)
Query: 20 GQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78
G + +R+ FA+M P R+ V W MI G + EA LF EM+ + D FT V +
Sbjct: 156 GSLRDSRRLFAEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSL 215
Query: 79 LTAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDK 105
L MY KCGD+ A R M K+
Sbjct: 216 LLVCSKEGNLEVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNV 275
Query: 106 FTWTAMIVGLA 116
+WT+M+ LA
Sbjct: 276 VSWTSMLCALA 286
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW +++GY+ G V A++ F MP++D V WT MI G ++ ++ EALT+F MQ
Sbjct: 331 DQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQ 390
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+PDE T+V +++A MY KCG +E
Sbjct: 391 AQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLE 450
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYVGVLSAC 138
A V M + W A+IVGLA++ D F T P+E+T+ GVLSAC
Sbjct: 451 SALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSAC 510
Query: 139 THNG 142
H G
Sbjct: 511 RHAG 514
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 41/182 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + + +VS + RG VD AR+ F + +D WTAMI + R +F EAL LF
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ DE +V ++ A +MY
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGL----AISDP--FPTIRPDE--VTYVGVLSACT 139
+V A+R+ D+F+W +MI G ++ D T+ PD+ V++ ++S C
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 140 HN 141
N
Sbjct: 375 QN 376
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 37/108 (34%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SW I++ Y+ VD A FA+MPER ++M+
Sbjct: 168 DAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVS------------------- 208
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
++ + G V++A++V + RKD FTWTAMI
Sbjct: 209 ------------------LFGRRGMVDEARKVFDGVERKDVFTWTAMI 238
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
VI T ++ Y+ G ++ A + F M ER W A+I G ++L +F EM++
Sbjct: 433 VILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES 492
Query: 66 SNI-RPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRK 103
S+ P+E T +L+A C+ G VE+ Q + M K
Sbjct: 493 SSTATPNEITFTGVLSA---CRHAGLVEEGQHFFKLMQHK 529
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW +++GY+ G V A++ F MP++D V WT MI G ++ ++ EALT+F MQ
Sbjct: 331 DQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQ 390
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+PDE T+V +++A MY KCG +E
Sbjct: 391 AQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTITVILGTSLIDMYMKCGCLE 450
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYVGVLSAC 138
A V M + W A+IVGLA++ D F T P+E+T+ GVLSAC
Sbjct: 451 SALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMESSSTATPNEITFTGVLSAC 510
Query: 139 THNG 142
H G
Sbjct: 511 RHAG 514
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 41/182 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + + +VS + RG VD AR+ F + +D WTAMI + R +F EAL LF
Sbjct: 195 MPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALF 254
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ DE +V ++ A +MY
Sbjct: 255 SDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSF 314
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGL----AISDP--FPTIRPDE--VTYVGVLSACT 139
+V A+R+ D+F+W +MI G ++ D T+ PD+ V++ ++S C
Sbjct: 315 LNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISGCV 374
Query: 140 HN 141
N
Sbjct: 375 QN 376
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 37/108 (34%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SW I++ Y+ VD A FA+MPER ++M+
Sbjct: 168 DAVSWNTILAAYVQAEDVDQAVGVFARMPERGAAAVSSMVS------------------- 208
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
++ + G V++A++V + RKD FTWTAMI
Sbjct: 209 ------------------LFGRRGMVDEARKVFDVVERKDVFTWTAMI 238
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
VI T ++ Y+ G ++ A + F M ER W A+I G ++L +F EM++
Sbjct: 433 VILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES 492
Query: 66 SNI-RPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRK 103
S+ P+E T +L+A C+ G VE+ Q + M K
Sbjct: 493 SSTATPNEITFTGVLSA---CRHAGLVEEGQHFFKLMQHK 529
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 93/185 (50%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV +V Y+ G + AR+ F +MP ++ V W +MI G + +F+E+L +F +
Sbjct: 237 NLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRK 296
Query: 63 MQTSNIRPDEFTIVRILT---------------AY------------------MYCKCGD 89
MQ ++PD+ T+V +L AY MY KCG
Sbjct: 297 MQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGS 356
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+++A V + M RKD +++TAMIVGLA+ P I PDEVT+VGVL+A
Sbjct: 357 IDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTA 416
Query: 138 CTHNG 142
C+H G
Sbjct: 417 CSHVG 421
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 15/130 (11%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
AR+ F P+RD V WT MI GY+++ RE + L+ ++ SN+ D F ++ MY
Sbjct: 194 ARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYI-IRNSNVNLDVFVGNALVD--MY 250
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYV 132
KCGD A++V ++M K+ +W +MI GLA F ++PD+VT V
Sbjct: 251 LKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLV 310
Query: 133 GVLSACTHNG 142
VL++C + G
Sbjct: 311 AVLNSCANLG 320
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G +D A F M +D +TAMI G + +AL LF EM I PD
Sbjct: 347 LVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPD 406
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA--ISDPFP 122
E T V +LTA + G VE+ ++ M LR + M+ +G A I++
Sbjct: 407 EVTFVGVLTACSH--VGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEE 464
Query: 123 TIR-----PDEVTYVGVLSACTHNG 142
IR PD +L AC +G
Sbjct: 465 FIRNMPIEPDAFVLGALLGACKIHG 489
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ GY +D AR+ F MPE+D V WT MI GY + R+++ L LF
Sbjct: 252 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 311
Query: 61 PEMQT-SNIRPDEFTIVRILTAY-----------------------------------MY 84
MQT SN++P+E T+V +L+A MY
Sbjct: 312 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG + A ++ + RK+ W A+I LA++ D F + +P+++T+V
Sbjct: 372 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFV 431
Query: 133 GVLSACTHNG 142
GVL+AC+H G
Sbjct: 432 GVLTACSHGG 441
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW+ +V GY G++D+AR+ F +MP R+ V W +M+ G+ R A
Sbjct: 188 MPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARK 247
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F EM N+ + +L Y D++ A+ + M KD +WT MI G A +
Sbjct: 248 MFDEMPVRNL----VSWNAMLRGYSVNS--DMDGARELFDVMPEKDVVSWTCMISGYAQA 301
Query: 119 DPF-------------PTIRPDEVTYVGVLSACTH 140
+ ++P+EVT V VLSAC +
Sbjct: 302 GRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 336
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ DIA + F + ++ W A+I R+++ F +M+ + +P+
Sbjct: 367 LIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPN 426
Query: 72 EFTIVRILTAYMYCKCGD-VEKAQRVLRKM 100
+ T V +LTA C G V++ +R + M
Sbjct: 427 DITFVGVLTA---CSHGGLVDEGRRCFQSM 453
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPTIRPDEVTYVG 133
Y KCG++E A+RV +M R++ +W+ M+ G A + D P I + VT+
Sbjct: 172 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNS 231
Query: 134 VLSACTHNG 142
+++ +G
Sbjct: 232 MVTGFARHG 240
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ GY +D AR+ F MPE+D V WT MI GY + R+++ L LF
Sbjct: 252 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 311
Query: 61 PEMQT-SNIRPDEFTIVRILTAY-----------------------------------MY 84
MQT SN++P+E T+V +L+A MY
Sbjct: 312 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 371
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG + A ++ + RK+ W A+I LA++ D F + +P+++T+V
Sbjct: 372 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFV 431
Query: 133 GVLSACTHNG 142
GVL+AC+H G
Sbjct: 432 GVLTACSHGG 441
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW+ +V GY G++D+AR+ F +MP R+ V W +M+ G+ R A
Sbjct: 188 MPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARK 247
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F EM N+ + +L Y D++ A+ + M KD +WT MI G A +
Sbjct: 248 MFDEMPVRNL----VSWNAMLRGYSVNS--DMDGARELFDVMPEKDVVSWTCMISGYAQA 301
Query: 119 DPF-------------PTIRPDEVTYVGVLSACTH 140
+ ++P+EVT V VLSAC +
Sbjct: 302 GRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 336
Score = 40.0 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPTIRPDEVTYVG 133
Y KCG++E A+RV +M R++ +W+ M+ G A + D P I + VT+
Sbjct: 172 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNS 231
Query: 134 VLSACTHNG 142
+++ +G
Sbjct: 232 MVTGFARHG 240
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ DIA + F + ++ W A+I ++++ F +M+ + +P+
Sbjct: 367 LIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPN 426
Query: 72 EFTIVRILTAYMYCKCGD-VEKAQRVLRKM 100
+ T V +LTA C G V++ +R + M
Sbjct: 427 DITFVGVLTA---CSHGGLVDEGRRCFQSM 453
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT ++S Y G + AR +F +MP+R+ V W +MI Y++ F+EAL LF
Sbjct: 164 MPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLF 223
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------YMYCKCG 88
+M + I PD +T V + +A MY KCG
Sbjct: 224 NQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLGVIAATALIEMYAKCG 283
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
D+ +A + K+ +KD F W M+ LA+ ++P++ T++G L
Sbjct: 284 DINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALF 343
Query: 137 ACTHNG 142
AC+H G
Sbjct: 344 ACSHGG 349
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
VI+ T ++ Y G ++ A F ++ ++D W M+ + ++AL LF MQ
Sbjct: 269 VIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQK 328
Query: 66 SNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDK 105
++P++FT + L A C G VE+ Q + M ++ K
Sbjct: 329 QGLKPNDFTFLGALFA---CSHGGMVEEGQTIFDMMEKEYK 366
>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
Length = 540
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 87/159 (54%), Gaps = 17/159 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KD++ T +V GY G+V+IA F MPE+D V W+AMI GY ++ EAL LF
Sbjct: 231 VSEKDIVLSTTMVYGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAESSKPMEALNLF 290
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+MQ S ++PDE T++ IL M+ KCG + A V M +K+ TWT++I
Sbjct: 291 HDMQRSGVQPDEITMLSILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITAS 350
Query: 116 AISDPFPT------------IRPDEVTYVGVLSACTHNG 142
A+ + I+P+ VT++G+L AC H G
Sbjct: 351 AMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYACCHAG 389
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 33/140 (23%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V+ AR+ F MP+RD V W M+D Y + + EAL LF M+ S +
Sbjct: 108 TALVRAYAACGRVEDARKVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PD+ I +L+ MY C D+E A+++
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKL 227
Query: 97 LRKMLRKDKFTWTAMIVGLA 116
++ KD T M+ G A
Sbjct: 228 YNRVSEKDIVLSTTMVYGYA 247
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 87/189 (46%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SWT I+ GY + IAR F MP +D W +I GY + R +EAL +F
Sbjct: 404 MEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIF 463
Query: 61 PEMQ--TSNIRPDEFTIVRILTAY---------------------------------MYC 85
E+Q S RPD+ T++ L+A MY
Sbjct: 464 RELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYS 523
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVG 133
K GDVEKA V + KD F W+AMI GLA+ ++P+ VT+
Sbjct: 524 KSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTN 583
Query: 134 VLSACTHNG 142
+L AC+H+G
Sbjct: 584 LLCACSHSG 592
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 18/158 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V+ A + F + +D +W+AMI G R A+ LF +MQ + ++
Sbjct: 516 TSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVK 575
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVG-------- 114
P+ T +L A + G V++ +R+ +M R ++ ++G
Sbjct: 576 PNSVTFTNLLCACSH--SGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEA 633
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152
L + P + P + +L AC +GN +C+
Sbjct: 634 LKFIEGMP-LAPSASVWGALLGACCIHGNLELAEKACS 670
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 89/186 (47%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ISWT +V+GY+ QV+ AR F M ER+ V WTAMI GY++ RF +AL LF
Sbjct: 198 MPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLF 257
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + RP+ FT +L A MY KC
Sbjct: 258 VLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKC 317
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR----PDEVTYVGVLS 136
GD++ A V + K+ +W A+I G A + F ++ PDEVT+V VLS
Sbjct: 318 GDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTPDEVTFVNVLS 377
Query: 137 ACTHNG 142
AC H G
Sbjct: 378 ACVHAG 383
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 49/148 (33%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDV SW +VS Y+ G+ A+ F QMP+R+ + WT +++GY++ +
Sbjct: 170 KDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQ----------- 218
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-- 121
V KA+ V M ++ +WTAMI G + F
Sbjct: 219 --------------------------VNKARSVFDDMSERNVVSWTAMISGYVQNKRFVD 252
Query: 122 ----------PTIRPDEVTYVGVLSACT 139
RP+ T+ VL AC
Sbjct: 253 ALKLFVLMFKTETRPNHFTFSSVLDACA 280
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 23/156 (14%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DVI T +V Y G +D A F + +++ V W A+I GY AL F M+
Sbjct: 303 DVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMK 362
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVG--- 114
PDE T V +L+A ++ G VE+ ++ ML K + ++ + G
Sbjct: 363 VVGT-PDEVTFVNVLSACVH--AGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAG 419
Query: 115 -------LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
L + PF PD V + +L+AC + N
Sbjct: 420 RFDEAENLIKNMPF---EPDVVLWGALLAACGLHSN 452
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+++SW +++ Y+ Q+ F +MP +D V W M+ G+ R F +M
Sbjct: 39 NIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMG 98
Query: 65 TSNIRPDEFTIVRILTA 81
+ + P+++TI +L A
Sbjct: 99 RAGVVPNDYTISTLLRA 115
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +V GY G+++ AR+ F +MPE+D V WT MI GY + + E L LF
Sbjct: 236 MPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELF 295
Query: 61 PEMQT-SNIRPDEFTIVRILTAY-----------------------------------MY 84
MQ+ SN+ P+E T+V +L+A MY
Sbjct: 296 RAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMY 355
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYV 132
KCG + A ++ + +K+ W A+I GLA++ D F +R P+ +T+V
Sbjct: 356 SKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFV 415
Query: 133 GVLSACTHNG 142
GVL+AC H G
Sbjct: 416 GVLTACAHGG 425
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW+ +V Y G++D+AR+ F +MP R+ V W +MI G+ R A
Sbjct: 172 MPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARK 231
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F EM N+ T+VR Y G++ A+ + +M KD +WT MI G A +
Sbjct: 232 MFDEMPVRNLVSWN-TMVR-----GYAVNGEMNDARELFDRMPEKDVVSWTCMISGYAQA 285
Query: 119 DPF-------------PTIRPDEVTYVGVLSACTH 140
+ + P+EVT V VLSAC H
Sbjct: 286 RCYTETLELFRAMQSESNVLPNEVTMVSVLSACAH 320
Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ D+A + F + +++ W A+I G R ++ +F +M+ S +P+
Sbjct: 351 LIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPN 410
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T V +LTA + G V++ +R + M
Sbjct: 411 GITFVGVLTACAH--GGLVDEGRRCFQSM 437
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 86/188 (45%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +V GY G VDIAR F MPERD V W +MI Y++ R EAL LF
Sbjct: 218 MPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELF 277
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + + D I IL+A MY KC
Sbjct: 278 KEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKC 337
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVGVL 135
G ++ A V M RK+ +W AM+ GLAI F + P+++T+V VL
Sbjct: 338 GCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVL 397
Query: 136 SACTHNGN 143
SAC+H G+
Sbjct: 398 SACSHIGS 405
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGY-INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KD T V Y ++ +D A F + D WT MI G++ +AL +
Sbjct: 57 KDTFIATKTVESYAVSARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGL 116
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ + ++FT + +L AY MY KCG
Sbjct: 117 MRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGS 176
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVG 114
+ A + +M + TW MI G
Sbjct: 177 ITDAHLLFDEMPNHNVVTWNTMITG 201
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY RG V +AR+ F +RD W++MI Y + +EAL L+
Sbjct: 142 MSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELW 201
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + + PD ++V +L+A MY KC
Sbjct: 202 REMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKC 261
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGVL 135
GD+E + +V M KD TW++MI+GLA S+ ++P+E+T++GVL
Sbjct: 262 GDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVL 321
Query: 136 SACTHNG 142
ACTH G
Sbjct: 322 IACTHVG 328
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 87/190 (45%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SWT ++ R +D AR +F Q+PE+ + W AMI Y++ RF EAL L+
Sbjct: 272 MPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLY 331
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ + PDEFT+ +L+A MY +C
Sbjct: 332 NRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFHNPGVALFNSLLDMYARC 391
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS---------------DPFPTIRPDEVTYV 132
G V+ A + +M K+ +W A+I LA+ D FP PDE+T+V
Sbjct: 392 GQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRSMVFDAFP---PDEITFV 448
Query: 133 GVLSACTHNG 142
+LSAC H G
Sbjct: 449 ALLSACNHGG 458
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 33/138 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y + G + +R++F +M +R+ V W +MI+GY + REA +LF M+ + D
Sbjct: 151 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFEGMRRQGLLAD 210
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT+V +L A MY KCGD+ A
Sbjct: 211 EFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFD 270
Query: 99 KMLRKDKFTWTAMIVGLA 116
M K+ +WT+M+ LA
Sbjct: 271 MMPFKNAVSWTSMLCALA 288
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N V + ++ Y GQVD A F++MP ++ + W A+I R ++AL F
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMIVGL-- 115
M PDE T V +L+A C G + +A + + +R K A +V L
Sbjct: 435 MVFDAFPPDEITFVALLSA---CNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLG 491
Query: 116 ----------AISDPFPTIRPDEVTYVGVLSACTHNGN 143
I D P +RPD V + +L AC +G+
Sbjct: 492 RGGQLAKAVDLIKD-MP-MRPDVVVWGALLGACRIHGH 527
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 69/172 (40%), Gaps = 45/172 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V ARQ F ++P+ D ++ ++I Y + +EAL L M I P+EFT+ +L
Sbjct: 58 GGVWYARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLL 117
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A + Y G + ++R +M+ ++
Sbjct: 118 KACARVQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 177
Query: 107 TWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNGNETF 146
+W +MI G A + F +R DE T V +L AC+ GN F
Sbjct: 178 SWNSMINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEF 229
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +D++SW ++ GYI G +D+A + F MPE++ + WT MI G++R+ +EAL+L
Sbjct: 171 LPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLL 230
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + I+PD T+ L+A MY KC
Sbjct: 231 QQMLVAGIKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKC 290
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G++EKA V K+ +K WTA+I GLAI D F I P+ +T+ +L
Sbjct: 291 GEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAIL 350
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 351 TACSHAG 357
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K SW ++ G+ G VD AR +F ++PE+D V W M++ Y++ + F E+ +F +M
Sbjct: 432 KSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKM 491
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q+SN++PD+ T++ +L++ MY KCG V
Sbjct: 492 QSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCV 551
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
E A + +++ K+ F WTAM+ A+ ++PD VT++ +L+AC
Sbjct: 552 EMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAAC 611
Query: 139 THNG 142
+H G
Sbjct: 612 SHGG 615
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 33/147 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ WT +VSGY+ ++D ARQ F +M ER V WT M+ GY++ + E+L LF +M+
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMR 360
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+ PDE +V +L+A +Y KCG ++
Sbjct: 361 FENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLD 420
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+A R ++ K +W +M+ G S
Sbjct: 421 EALRTFEQLPCKSAASWNSMLDGFCRS 447
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 74/208 (35%), Gaps = 78/208 (37%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G++ Q F +M RD + W MI Y+ +REAL LF EM S + P
Sbjct: 173 NLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLP 232
Query: 71 DEFTIVRILTAY---------------------------------MYCKCG--------- 88
DE T+V +++ MY KCG
Sbjct: 233 DEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLL 292
Query: 89 ------------------------DVEKAQRVLRKMLRKDKFTWTAMIVG---------- 114
++KA+++ KM + +WT M+ G
Sbjct: 293 SRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCES 352
Query: 115 --LAISDPFPTIRPDEVTYVGVLSACTH 140
L F + PDEV V VLSAC H
Sbjct: 353 LELFQQMRFENVIPDEVALVTVLSACVH 380
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 57/193 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM------PER------------------- 35
M + ++SWT ++SGY+ G + + F QM P+
Sbjct: 328 MNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLG 387
Query: 36 --------------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
D L A++D Y + + EAL F ++ + + +L
Sbjct: 388 RSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAA----SWNSMLDG 443
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEV 129
+C+ G V+KA+ K+ KD +W M+ D F ++PD+
Sbjct: 444 --FCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKT 501
Query: 130 TYVGVLSACTHNG 142
T + +LS+C G
Sbjct: 502 TLISLLSSCAKVG 514
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD++SWT ++ GY G D AR+ F MP D W A+I Y + + +EAL +F
Sbjct: 293 MEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIF 352
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
E+Q N +P+E T+ L A MY K
Sbjct: 353 RELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSK 412
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGV 134
CG +EKA V + R+D F W+AMI GLA+ D F ++P+ VT+ +
Sbjct: 413 CGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNL 472
Query: 135 LSACTHNG 142
L AC+H+G
Sbjct: 473 LCACSHSG 480
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+ ++ Y + G +D A F+++ E+D V W +MI G+++ EAL LF
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKR 222
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ N RP+ T+V +L+A MY KCG
Sbjct: 223 MKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGS 282
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+E A+R+ KM KD +WT MI G A
Sbjct: 283 LEDARRLFDKMEEKDIVSWTTMIDGYA 309
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 60/165 (36%), Gaps = 46/165 (27%)
Query: 21 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-PDEFTIVRIL 79
+D A + F Q+P + W +I + + + L +F +M + R P+ +T ++
Sbjct: 79 SLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVI 138
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A + Y GD++ A V K++ KD
Sbjct: 139 KAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIV 198
Query: 107 TWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACT 139
+W +MI G RP+ VT VGVLSAC
Sbjct: 199 SWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACA 243
>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
Length = 1287
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 45/179 (25%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW I+ GY G VD+AR F QM RD + + +MI GY+ + REAL LF M+ +
Sbjct: 247 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 306
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
+R D FT+V +L+A MY KCG V +A
Sbjct: 307 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 366
Query: 95 RVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V ++M ++D WTAMI GLA + + F +R P+ V+Y+ VL+AC+H+
Sbjct: 367 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHS 425
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +SWT ++SG G + AR AQ P RD + WT++I Y R +R +EA+ F M
Sbjct: 110 KDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM 169
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ I PD+ T++ +L+A MY KCGD
Sbjct: 170 LSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDF 229
Query: 91 EKAQRVLRKMLRKDK-FTWTAMIVG 114
A+ V + R + +W A+I G
Sbjct: 230 GHAREVFDAVGRGRRPQSWNAIIDG 254
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y+ G+V+ A F +M +RD WTAMI G + L F +M+
Sbjct: 345 DIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMR 404
Query: 65 TSNIRPDEFTIVRILTA 81
+P+ + + +LTA
Sbjct: 405 CDGFQPNPVSYIAVLTA 421
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +V GY G +D+AR F +MP ++ V WT MI GY ++A+ L+
Sbjct: 240 MPARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLY 299
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + ++ D+ T++ IL+A MY KC
Sbjct: 300 NQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKC 359
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVL 135
G +E A + M+RKD +W A+I GLA+ F ++ PD+VT+VGVL
Sbjct: 360 GSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVL 419
Query: 136 SACTHNG 142
ACTH G
Sbjct: 420 CACTHAG 426
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++ G + G++ AR+ F +MPERD V W ++DGY++ A LF
Sbjct: 178 MAERDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELF 237
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
+M N+ ++ Y K GD++ A+ + KM K+ WT MI G A
Sbjct: 238 EKMPARNVVSWSTMVLG------YSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGL 291
Query: 117 ISDPF--------PTIRPDEVTYVGVLSACTHNG 142
D ++ D+ T + +LSAC +G
Sbjct: 292 AKDAINLYNQMEEAGLKFDDGTVISILSACAVSG 325
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)
Query: 5 DVISWTDIVSGYINRG--QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+ ++ Y G V AR+ F M ERD V W +MI G ++V EA LF E
Sbjct: 149 DIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGEARRLFDE 208
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M P+ T+ Y K G++ A + KM ++ +W+ M++G
Sbjct: 209 M------PERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLG 254
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 44/183 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +SW I++GY G++++A F Q+P RD V W ++I GY + + LF M
Sbjct: 228 KDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM 287
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
N++PD+ TIV +++A MYCKCG +
Sbjct: 288 FAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSI 347
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGVLSACT 139
E+A + ++ KD TWT MI G A + F + +P++VT+V VL+AC+
Sbjct: 348 ERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACS 407
Query: 140 HNG 142
H+G
Sbjct: 408 HSG 410
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 41/174 (23%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y++ G + ARQ F +M +R+ V + MI G+ +V L LF +M++ + P
Sbjct: 103 SLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEP 162
Query: 71 DEFTIVRI----------------------------LTAY-----MYCKCGDVEKAQRVL 97
D+FT++ + L Y MY KC +++ A++V
Sbjct: 163 DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF 222
Query: 98 RKMLRKDKFTWTAMIVGLA-------ISDPFPTIRP-DEVTYVGVLSACTHNGN 143
+ KD +W +I G A D F I D V++ ++S NG+
Sbjct: 223 DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGD 276
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 21 QVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
+ + + AQ+ + + +L+ A++D Y++ N + A +F + D +
Sbjct: 179 ETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFD----GPMEKDTVSWN 234
Query: 77 RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------I 124
I+ Y K G++E A + ++ +D +W ++I G A + + T +
Sbjct: 235 TIIAGY--AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENV 292
Query: 125 RPDEVTYVGVLSACTHNG 142
+PD+VT V ++SA G
Sbjct: 293 KPDKVTIVNLISAVAEMG 310
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 85/168 (50%), Gaps = 45/168 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ AR+ F +MP+ D V W+AMI GY RV R EA+ LF EMQ + + PDE T+V +L
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSML 241
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+A M+ KCGD+ KA ++ R M K
Sbjct: 242 SACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIV 301
Query: 107 TWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
+WT++IVG+A+ + PD+V ++G+LSAC+H+G
Sbjct: 302 SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSG 349
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A + F M E+ V WT++I G R +EA LF EM +S + PD+ + +L
Sbjct: 283 GDISKALKLFRAMNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLL 342
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKF 106
+A + G VE+ + M++K K
Sbjct: 343 SACSH--SGLVERGREYFGSMMKKYKL 367
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 72/185 (38%), Gaps = 55/185 (29%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEM 63
+I TD + ++ + D R Y D L+ +I Y + ++ AL L+ M
Sbjct: 72 SLIHATDYAASFLFSAEAD-TRLY-------DAFLFNTLIRAYAQTGHSKDKALALYGIM 123
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMY-CKCGD 89
I P++FT +L A +MY C G
Sbjct: 124 LHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGG 183
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVGVLSA 137
+ A++V +M + D TW+AMI G A ++ R PDE+T V +LSA
Sbjct: 184 INSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSA 243
Query: 138 CTHNG 142
CT G
Sbjct: 244 CTDLG 248
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DVISWT+++S Y+ G ++ A + F +P +D V WT M+ G+ + + REA+ F
Sbjct: 208 MPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFF 267
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
+MQ + DE T++ +++A MY
Sbjct: 268 EKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYS 327
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFP--------TIRPDEVTYVG 133
KCG V A RV + M ++ +++++MI+G A + D I+P+ VT++G
Sbjct: 328 KCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIG 387
Query: 134 VLSACTHNG 142
VL+AC+H G
Sbjct: 388 VLTACSHAG 396
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
V+ + ++ Y G V A + F M ER+ +++MI G+ R +A+ LF E
Sbjct: 313 KHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDE 372
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
M + I+P+ T + +LTA + G VE+ ++ M
Sbjct: 373 MVKTEIKPNRVTFIGVLTACSH--AGMVEQGWQIFELM 408
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+SW +++GY+ G++++A++ F M ++D V WT+MI Y++ +AL LF
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLF 229
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + +RPD IV +L+A MY K
Sbjct: 230 REMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSK 289
Query: 87 CGDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVG 133
CG +E A V R + R++ W +MI GLAI D F I P+E+T++G
Sbjct: 290 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLG 349
Query: 134 VLSACTHNG 142
+LS C+H G
Sbjct: 350 LLSTCSHGG 358
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYV-LWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G ++ A F + R + W +MI G REAL +F EM+ +I P
Sbjct: 283 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 342
Query: 71 DEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDK 105
+E T + +L+ C G VE+ Q M K K
Sbjct: 343 NEITFLGLLST---CSHGGLVEEGQFYFESMHEKYK 375
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 60/184 (32%), Positives = 91/184 (49%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D IS+T +++GY G +D ARQ F +MP +D V W AMI GY ++ R +EAL LF +M
Sbjct: 193 RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDM 252
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +N+ P+E TIV +L+A MY KCGD+
Sbjct: 253 RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL 312
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSAC 138
+ A+ + ML +D +W MI G LA+ + P E+T++ +L +C
Sbjct: 313 QTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSC 372
Query: 139 THNG 142
H G
Sbjct: 373 AHLG 376
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 79/179 (44%), Gaps = 51/179 (28%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + AR+ F M ERD + W MI GY + ++EAL LF EM S + P
Sbjct: 302 LIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPT 361
Query: 72 EFTIVRILT---------------AY------------------MYCKCGDVEKAQRVLR 98
E T + IL AY +Y KCG++ A++V
Sbjct: 362 EITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFD 421
Query: 99 KMLRKDKFTWTAMIVGLAI---------------SDPFPTIRPDEVTYVGVLSACTHNG 142
M K +W AMI GLA+ SD I P+E+T+VG+LSAC H G
Sbjct: 422 GMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSD---GIEPNEITFVGILSACKHAG 477
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + ARQ F M + W AMI G + +A LF +M + I P+E T
Sbjct: 407 YAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITF 466
Query: 76 VRILTAYMYCK-CGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP------- 122
V IL+A CK G V+ Q+ M++ K + + MI L + F
Sbjct: 467 VGILSA---CKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQ 523
Query: 123 --TIRPDEVTYVGVLSACTHNG 142
++PD + +L AC +G
Sbjct: 524 NMEVKPDGAIWGSLLGACRDHG 545
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 59/149 (39%), Gaps = 49/149 (32%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +++ Y G+++ A+ F Q RD + +TA+I GY
Sbjct: 163 DVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGY----------------- 205
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP---- 120
L YM ++A+++ +M KD +W AMI G A
Sbjct: 206 -------------ALWGYM-------DRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEA 245
Query: 121 ---FPTIR-----PDEVTYVGVLSACTHN 141
F +R P+E T V VLSAC +
Sbjct: 246 LLLFEDMRKANVPPNESTIVSVLSACAQS 274
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV W +++GY G + AR F +MP+R+ + WTA+I GY + NR +A+ LF
Sbjct: 143 MSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDAIALF 202
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
MQ N+ PDE ++ LTA MY K
Sbjct: 203 RRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAK 262
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
GD++ A +V M K TWT MI GLA+ + F ++P+++T++ +
Sbjct: 263 SGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDITFIAI 322
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 323 LSACSHVG 330
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 44/183 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +SW I++GY G++++A F Q+P RD V W ++I GY + + LF M
Sbjct: 293 KDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRM 352
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
N++PD+ TIV +++A MYCKCG +
Sbjct: 353 FAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSI 412
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGVLSACT 139
E+A + ++ KD TWT MI G A + F + +P++VT+V VL+AC+
Sbjct: 413 ERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACS 472
Query: 140 HNG 142
H+G
Sbjct: 473 HSG 475
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 41/174 (23%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y++ G + ARQ F +M +R+ V + MI G+ +V L LF +M++ + P
Sbjct: 168 SLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEP 227
Query: 71 DEFTIVRI----------------------------LTAY-----MYCKCGDVEKAQRVL 97
D+FT++ + L Y MY KC +++ A++V
Sbjct: 228 DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF 287
Query: 98 RKMLRKDKFTWTAMIVGLA-------ISDPFPTIRP-DEVTYVGVLSACTHNGN 143
+ KD +W +I G A D F I D V++ ++S NG+
Sbjct: 288 DGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGD 341
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 21 QVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
+ + + AQ+ + + +L+ A++D Y++ N + A +F + D +
Sbjct: 244 ETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVF----DGPMEKDTVSWN 299
Query: 77 RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------I 124
I+ Y K G++E A + ++ +D +W ++I G A + + T +
Sbjct: 300 TIIAGY--AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENV 357
Query: 125 RPDEVTYVGVLSACTHNG 142
+PD+VT V ++SA G
Sbjct: 358 KPDKVTIVNLISAVAEMG 375
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++D++SW ++ GYI G V++A + F MPE++ + WT+MI G++R +EAL L
Sbjct: 172 LPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLL 231
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + I+PD+ T+ L+A MY KC
Sbjct: 232 QQMLVAGIKPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKC 291
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G+++KA V K+ +K +TWTA+I G A+ D F I+P T+ VL
Sbjct: 292 GEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAGIKPTSFTFTAVL 351
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 352 TACSHTG 358
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 2 KNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + ++ Y+ G++ A F+++ ++ WTA+I G+ + EAL
Sbjct: 271 KNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALD 330
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
F +MQ + I+P FT +LTA + G VE+ + + M
Sbjct: 331 WFTQMQKAGIKPTSFTFTAVLTACSH--TGLVEEGKSLFESM 370
>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
Length = 1349
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 45/179 (25%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW I+ GY G VD+AR F QM RD + + +MI GY+ + REAL LF M+ +
Sbjct: 309 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 368
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
+R D FT+V +L+A MY KCG V +A
Sbjct: 369 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 428
Query: 95 RVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
V ++M ++D WTAMI GLA + + F +R P+ V+Y+ VL+AC+H+
Sbjct: 429 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHS 487
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +SWT ++SG G + AR AQ P RD + WT++I Y R +R +EA+ F M
Sbjct: 172 KDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNM 231
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ I PD+ T++ +L+A MY KCGD
Sbjct: 232 LSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDF 291
Query: 91 EKAQRVLRKMLR-KDKFTWTAMIVG 114
A+ V + R + +W A+I G
Sbjct: 292 GHAREVFDAVGRGRRPQSWNAIIDG 316
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y+ G+V+ A F +M +RD WTAMI G + L F +M+
Sbjct: 407 DIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMR 466
Query: 65 TSNIRPDEFTIVRILTA 81
+P+ + + +LTA
Sbjct: 467 CDGFQPNPVSYIAVLTA 483
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S T +VSGY +V+IAR F MPE+D V W+AMI GY+ N+ EAL+LF
Sbjct: 312 MPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLF 371
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ IR DE T++ +++A M+ KC
Sbjct: 372 NGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKVLHICNALIDMFAKC 431
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVGVL 135
G + A V +M K+ TWT+MI A+ D ++R P+EVT++ +L
Sbjct: 432 GGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 491
Query: 136 SACTHNG 142
AC H G
Sbjct: 492 YACCHAG 498
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 78/210 (37%), Gaps = 76/210 (36%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T + Y G V R+ F M RD V W M+D Y + ++EAL LF +M+ S +
Sbjct: 189 TALAGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVV 248
Query: 70 PDEFTIVRILTA---------------YM------------------YCKCGDVEKAQRV 96
PD+ + +L A YM Y C ++E A+++
Sbjct: 249 PDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKL 308
Query: 97 LRKMLRKDKFTWTAMIVGLA----------ISDPFPT----------------------- 123
+M RKD + TAM+ G A I D P
Sbjct: 309 YNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEAL 368
Query: 124 ----------IRPDEVTYVGVLSACTHNGN 143
IR DE+T + V+SAC + G+
Sbjct: 369 SLFNGMQECGIRSDEITMLSVISACANLGS 398
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +++A F +MP ++ + WT+MI + + +L LF +M+ P+E T + +L
Sbjct: 432 GGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 491
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK 103
Y C G V + + + M+++
Sbjct: 492 --YACCHAGLVHEGRLLFSSMVQQ 513
>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 526
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 87/182 (47%), Gaps = 45/182 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDV+ T +V GY G V AR+ F +MPER+ V W+AM+ Y RV+ F+E L LF EM
Sbjct: 174 KDVVLGTAMVDGYGKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEM 233
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q P+E +V +LTA MY KCG V
Sbjct: 234 QNEGTEPNESILVTVLTACAHLGALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCV 293
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTI-----------RPDEVTYVGVLSAC 138
E A V ++ KD W AMI G A++ D ++ +P+E T+V VL+AC
Sbjct: 294 ESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTAC 353
Query: 139 TH 140
TH
Sbjct: 354 TH 355
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 51/137 (37%), Gaps = 49/137 (35%)
Query: 21 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
+VD AR F + +D VL TAM+DGY
Sbjct: 160 EVDTARVLFDETSYKDVVLGTAMVDGY--------------------------------- 186
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDE 128
K G+V+ A+ V KM ++ +W+AM+ + F + P+E
Sbjct: 187 ----GKMGNVKSAREVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNE 242
Query: 129 VTYVGVLSACTHNGNET 145
V VL+AC H G T
Sbjct: 243 SILVTVLTACAHLGALT 259
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G V+ A F + ++D W AMI G ++L LF +M S +
Sbjct: 281 TALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMISGEALNGDAGKSLQLFRQMAASRTK 340
Query: 70 PDEFTIVRILTAYMYCK 86
P+E T V +LTA + K
Sbjct: 341 PNETTFVAVLTACTHAK 357
>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
Length = 629
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 85/186 (45%), Gaps = 48/186 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW +VSGY G + AR+ FA+MPER+ V W+AM+D +R F EAL +F M
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
RPD +V +L A MYCKCG
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFPTIR--------PDEVTYVGVLS 136
+E A +V + R+D W AMI GLA++ R P+E T++ VL
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323
Query: 137 ACTHNG 142
ACTH G
Sbjct: 324 ACTHTG 329
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T +V Y G ++ A Q F + RD VLW AMI G L +N + E AL LF M
Sbjct: 253 TALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGG-LAMNGYGERALELFRRMLQKGF 311
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T + +L A + G V++ +RV + M
Sbjct: 312 MPNESTFIAVLCACTH--TGRVDEGKRVFKSM 341
>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT++++ Y G ++ A + F +P +D V WTAM+ G+ + + +EAL F
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
M+ S IR DE T+ ++A MY
Sbjct: 270 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 329
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYV 132
KCG+VE+A V M K+ FT+++MI+GLA I+P+ VT+V
Sbjct: 330 KCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFV 389
Query: 133 GVLSACTHNG 142
G L AC+H+G
Sbjct: 390 GALMACSHSG 399
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 67/199 (33%), Gaps = 76/199 (38%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
AR+ + R+ LWTA+I GY +F EA+ ++ M+ I P FT +L A
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY KC ++ A++V +M +D +WT +
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 112 IVGLA----------ISDPFPT---------------------------------IRPDE 128
I A + + PT IR DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 129 VTYVGVLSACTHNGNETFV 147
VT G +SAC G +
Sbjct: 282 VTVAGYISACAQLGASKYA 300
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW I+SG++ GQ+ A F MP R V WTAMI GY R+ + +AL +F
Sbjct: 180 MVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVF 239
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
+MQ + PDE +I+ +L A +MYC KC
Sbjct: 240 RQMQIVGVEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G + +A ++ +M + D +W+ MI GLA I P+ +T++G+L
Sbjct: 300 GCIGQAYQLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLL 359
Query: 136 SACTHNG 142
SAC H G
Sbjct: 360 SACAHAG 366
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 91/188 (48%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+S T +++ Y N G +D AR+ F +P +D++ W AMIDGY + + EAL LF
Sbjct: 180 MPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M S+ PDE T+V +L+A MYCK
Sbjct: 240 RRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCK 299
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG +E A V + KD W AMI G A+ + F +R P ++T++G+
Sbjct: 300 CGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGL 359
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 360 LNACSHSG 367
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G ++ A F + +D V+W AMI+GY R+AL +F +++ +
Sbjct: 291 TALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLW 350
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
P + T + +L A + G VE+ + + M + + + ++G A I +
Sbjct: 351 PTDITFIGLLNACSH--SGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEA 408
Query: 121 FP-----TIRPDEVTYVGVLSACTHNGN 143
F TI PD V +V +L+AC + N
Sbjct: 409 FHLVQSLTITPDAVMWVSLLAACRLHKN 436
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 94/186 (50%), Gaps = 45/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++I T ++ Y+ G VD R F M RD V W+AMI GY + R EAL LF
Sbjct: 38 GSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVXWSAMIAGYAQNGRSNEALELFEX 97
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+++ I+P++ T+V +L+A MY KCG+
Sbjct: 98 MKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGN 157
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGVLSA 137
+ KA+++ K+ ++D TW +MI+GLAI+ D ++P+ +T+VG+L+A
Sbjct: 158 IIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTA 217
Query: 138 CTHNGN 143
CTH G+
Sbjct: 218 CTHAGH 223
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRPDEFT 74
Y G + ARQ F ++P+RD V W +MI G L +N F E A+ L+ M+ ++P+ T
Sbjct: 152 YSKCGNIIKARQIFDKLPQRDNVTWNSMIMG-LAINGFAEDAIALYNRMKEIEVKPNNIT 210
Query: 75 IVRILTAYMYCKCGDVEKAQRVLRKM 100
V +LTA + G VE R M
Sbjct: 211 FVGLLTACTH--AGHVELGLEFFRSM 234
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 93/190 (48%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT++++ Y G ++ A F +P +D V WTAM+ G+ + + +EAL F
Sbjct: 211 MPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 270
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
M+ S IR DE T+ ++A MY
Sbjct: 271 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 330
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYV 132
KCG+VE+A V M K+ F++++MI+GLA D F I+P+ VT+V
Sbjct: 331 KCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFV 390
Query: 133 GVLSACTHNG 142
G L+AC+H+G
Sbjct: 391 GALTACSHSG 400
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 63/189 (33%), Gaps = 76/189 (40%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY------------ 82
R+ LWTA+I GY +F EA+ ++ M+ I P FT +L A
Sbjct: 113 RNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQF 172
Query: 83 ---------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----- 116
MY KCG + A++V +M +D +WT +I A
Sbjct: 173 HAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNM 232
Query: 117 -----ISDPFPT---------------------------------IRPDEVTYVGVLSAC 138
+ + PT IR DEVT G +SAC
Sbjct: 233 ESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISAC 292
Query: 139 THNGNETFV 147
G +
Sbjct: 293 AQLGASKYA 301
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y G + AR+ F MP+RD + WT+MI GY + ++F +A+ LF EM
Sbjct: 159 DVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 218
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ ++PD+ T+ +L+A MYCKCG VE
Sbjct: 219 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVE 278
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
KA V +M KD +WT++I GLA++ D F ++P T+VG+L AC
Sbjct: 279 KALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 338
Query: 140 HNG 142
H G
Sbjct: 339 HAG 341
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y GQ+ A++ F M +RD V W +I GY + N+++E L LF M +NI+ D
Sbjct: 65 LIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKAD 124
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
T+V+I+ A MY + G++ A+++
Sbjct: 125 AVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFD 184
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
M ++D +WT+MI G + + F ++PD+VT VLSAC H G
Sbjct: 185 NMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 240
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEV 129
+MY CG + AQ++ ML +D +W +I G + + + I+ D V
Sbjct: 67 HMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAV 126
Query: 130 TYVGVLSACTHNGNETF 146
T V ++ AC+H G+ F
Sbjct: 127 TMVKIILACSHLGDWEF 143
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W+ + Y G ++ AR F +M +RD V WTAMID Y + R +E LF +
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFAD 294
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ S IRP+EFT +L A +MY KCG+
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGN 354
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTIR-----------PDEVTYVGVLSA 137
+ A+RV ++ + D F+WT++I G A + P IR PD +T+VGVLSA
Sbjct: 355 MVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSA 414
Query: 138 CTHNG 142
C H G
Sbjct: 415 CAHAG 419
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 96/190 (50%), Gaps = 46/190 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++SGY G + A+ F +MPERD WTAMI GY+R +R EAL LF
Sbjct: 131 MPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELF 190
Query: 61 PEMQTS-NIRPDEFTI------------VRI---LTAY------------------MYCK 86
M+ S N + ++FT+ +RI + Y MY K
Sbjct: 191 RMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 250
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAI-SDPFPT-IRPDEVTYVGV 134
CG +E+A+ + KM+ +D TWTAMI G + +D + IRP+E T+ GV
Sbjct: 251 CGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGV 310
Query: 135 LSACTHNGNE 144
L+AC + +E
Sbjct: 311 LNACANQTSE 320
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 16/146 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + A + F + P+ D WT++I GY + + EA+ F + S +PD
Sbjct: 345 LVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPD 404
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTA-----MIVGLAISDPFP---- 122
T V +L+A + G V+K + + T TA +I LA S F
Sbjct: 405 HITFVGVLSACAHA--GLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAEN 462
Query: 123 -----TIRPDEVTYVGVLSACTHNGN 143
+++PD+ + +L C +GN
Sbjct: 463 IISKMSMKPDKFLWASLLGGCRIHGN 488
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 42/105 (40%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
+++ F +MPERD W +I GY
Sbjct: 124 SQKLFDEMPERDLCSWNILISGY------------------------------------- 146
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEV 129
K G +++A+ + KM +D F+WTAMI G D RP+E
Sbjct: 147 AKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHD-----RPNEA 186
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/187 (33%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S T +V GY + +IAR F MPE+D V W+AMI GY N+ EAL+LF
Sbjct: 232 MPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLF 291
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ IRPDE T++ +++A M+ KC
Sbjct: 292 NDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKC 351
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVL 135
G + A + +M +K+ TWT+MI A+ F +R P+EVT++ +L
Sbjct: 352 GGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLL 411
Query: 136 SACTHNG 142
AC H G
Sbjct: 412 YACCHAG 418
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 55/210 (26%), Positives = 78/210 (37%), Gaps = 76/210 (36%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G V AR+ F M RD V W M+D Y + ++EAL F +M+ S +
Sbjct: 109 TALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVL 168
Query: 70 PDEFTIVRILTA---------------YM------------------YCKCGDVEKAQRV 96
D+ + +L+A YM Y C +E A+++
Sbjct: 169 SDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKL 228
Query: 97 LRKMLRKDKFTWTAMIVGLA----------ISDPFPT----------------------- 123
M RKD + TAM+ G A I D P
Sbjct: 229 YNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEAL 288
Query: 124 ----------IRPDEVTYVGVLSACTHNGN 143
IRPDEVT + V+SAC + G+
Sbjct: 289 SLFNDMQECGIRPDEVTMLSVISACANLGS 318
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +++A F +MP+++ + WT+MI + + AL LF +M+ + P+E T + +L
Sbjct: 352 GGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLL 411
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK 103
Y C G V + + + M+++
Sbjct: 412 --YACCHAGLVHEGRSLFSSMVQQ 433
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQV+ A + F +M RD + WTAM++G+++ EAL+ F
Sbjct: 82 MEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWF 141
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 142 REMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRC 201
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A++V KM ++ +W ++IVG A + +PD VT+ G L
Sbjct: 202 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGAL 261
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 262 TACSHVG 268
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F +M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 198 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTF 257
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV-GLAISDP 120
LTA + G VE+ R + M R D ++ + L +
Sbjct: 258 TGALTACSH--VGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQS 315
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC ++GN T +
Sbjct: 316 MP-MKPNEVVIGSLLAACKNHGNNTLL 341
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 66/188 (35%), Positives = 82/188 (43%), Gaps = 51/188 (27%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W+ + Y G++D AR F +MP RD V WTAM+D Y R E LF
Sbjct: 194 DADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVR 253
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M S I P+EFT +L A +MY K GD
Sbjct: 254 MMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGD 313
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYVGV 134
+ A RV R M + D +WTAMI G A +S F RPD VT+VGV
Sbjct: 314 MGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGF---RPDHVTFVGV 370
Query: 135 LSACTHNG 142
LSAC H G
Sbjct: 371 LSACAHAG 378
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + A + F MP+ D V WTAMI GY + + EAL F + +S RPD
Sbjct: 304 LVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPD 363
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
T V +L+A + G V+K + + KDK+
Sbjct: 364 HVTFVGVLSACAH--AGLVDKGLGIFHSI--KDKY 394
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 51/194 (26%)
Query: 1 MKNKDVISWTDIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
+ + DV S+ +V+ G RG AR F +MP RD+ W+A++ ++R + R AL
Sbjct: 87 LPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALA 145
Query: 59 LF----------------------------------PEMQTSNIRP--DEFTIVRILTAY 82
++ E+ +R D +V A
Sbjct: 146 IYRRMLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALAD 205
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVT 130
MY K G ++ A+ V +M +D +WTAM+ L + I P+E T
Sbjct: 206 MYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFT 265
Query: 131 YVGVLSACTHNGNE 144
Y GVL AC +E
Sbjct: 266 YAGVLRACAEFTSE 279
>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 487
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KDV+ WT +V GY G ++ AR F +MPER+ + W+AM+ Y RV+ FRE L LF +
Sbjct: 174 GKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQ 233
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ NI P++ IV +LTA MY KCG
Sbjct: 234 MQKKNIVPNDSVIVSVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGY 293
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+E A V + KD W AMI G A++ + E T+V +L+A
Sbjct: 294 IESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAA 353
Query: 138 CTH 140
CTH
Sbjct: 354 CTH 356
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+++SW +V GY G +D+AR F MPERD W+ +IDGY + + +A+ +F +M
Sbjct: 74 KNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKM 133
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+TS + +E T+V +L A MY KCG V
Sbjct: 134 RTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAKCGAV 193
Query: 91 EKAQRVLRKM-LRK-DKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
E+A V R + LRK D W AMI GLA I+PDE+T++ +LS
Sbjct: 194 EEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIAGIKPDEITFLCLLS 253
Query: 137 ACTHNG 142
AC H G
Sbjct: 254 ACAHGG 259
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFPE 62
+++ T ++ Y G V+ A F + R D ++W AMI G +E+L L+ E
Sbjct: 176 NLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTE 235
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
MQ + I+PDE T + +L+A C G + K + + L K+ T
Sbjct: 236 MQIAGIKPDEITFLCLLSA---CAHGGLVKQASYVFEGLGKNGMT 277
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW ++ G G++D +R+ F +MP ++ + W +MI GY+R F+EAL LF +MQ
Sbjct: 189 DVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQ 248
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+P EFT+V +L A MYCKCG +
Sbjct: 249 EERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIG 308
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A +V K+ + +W +MI GLA++ +++PD ++++ VL+AC
Sbjct: 309 NALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACN 368
Query: 140 H 140
H
Sbjct: 369 H 369
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAMIDGYLRVNRF 53
M+N ++ SW ++ G+ IA F M P+R + + ++ Y ++
Sbjct: 83 MQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQR--LTYPSIFKAYSQLGLA 140
Query: 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
+ L + ++ D F +R YMY G + +A+R+ + + D +W +MI+
Sbjct: 141 HDGAQLHGRIIKLGLQFDPF--IRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMIL 198
Query: 114 GLA 116
GLA
Sbjct: 199 GLA 201
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 52/192 (27%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++++SW +++GY+ G VD AR+ F +MPER+ V WT MI G ++ R ++AL LF E
Sbjct: 182 DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHE 241
Query: 63 MQTSNIRPDEFTIVRILTA-------------------------------------YMYC 85
M+ + ++ D+ +V L+A +MY
Sbjct: 242 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 301
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI---------------RPDEVT 130
CG ++KA +V M ++ +WT+MI G A RPD +T
Sbjct: 302 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 361
Query: 131 YVGVLSACTHNG 142
++GVL AC+H G
Sbjct: 362 FIGVLCACSHAG 373
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ---TSN 67
++ Y + G +D A + F M +R + WT+MI G+ + EAL +F MQ T
Sbjct: 295 SLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDE 354
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
RPD T + +L A + G V++ + M +K
Sbjct: 355 GRPDGITFIGVLCACSH--AGFVDQGRHFFECMNKK 388
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 52/149 (34%)
Query: 10 TDIVSGYINRGQVD---IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
T +V+ Y G D AR+ F ++ +R+ V W +++ GY+R
Sbjct: 155 TSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVR----------------- 197
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISD 119
CGDV+ A+R+ +M ++ +WT MI G A
Sbjct: 198 --------------------CGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALH 237
Query: 120 PFPTIRP-----DEVTYVGVLSACTHNGN 143
F +R D+V V LSAC G+
Sbjct: 238 LFHEMRRAGVKLDQVALVAALSACAELGD 266
>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 522
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/186 (33%), Positives = 92/186 (49%), Gaps = 49/186 (26%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFP 61
K+V WT +V+GY N G V+ AR F +PER+ V ++AM+ GY++ FRE + LF
Sbjct: 159 KNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDVSYSAMVSGYVKNGCFREGIQLFR 218
Query: 62 EMQTSNIRPDEFTIVRILTAY-----------------------------------MYCK 86
E++ N++P+ + +L+A Y K
Sbjct: 219 ELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYVDQNKSQCYYELELGTALIDFYTK 278
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGV 134
CG VE AQRV M KD W+AM++GLAI+ + F + RP+ VT++GV
Sbjct: 279 CGCVEPAQRVFGNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGV 338
Query: 135 LSACTH 140
L+AC H
Sbjct: 339 LTACNH 344
Score = 37.0 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLRVNRFREA 56
MK KDV +W+ +V G + A + F +M P + V + ++ + F EA
Sbjct: 292 MKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLFGEA 351
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAY-----MYCKCGDVEKAQRVLRKM-LRKDKFTWTA 110
L LF M D++ IV + Y + + G +E+A ++ M + D W +
Sbjct: 352 LKLFGYMS------DKYGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGVIWGS 405
Query: 111 MIVG 114
++ G
Sbjct: 406 LLNG 409
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+DVI+WT +++GY+ GQV I R+ F +MPER+ V W+AMI GY+RV F EAL LF
Sbjct: 174 NRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEALELFNA 233
Query: 63 MQTSNIRPDEFTIV------------------------------RILTAY---MYCKCGD 89
M S P+ IV R++ A MY KCG
Sbjct: 234 MLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGC 293
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
+E A + ++ +D +T +I GLA T + P+EVT+V VL+A
Sbjct: 294 IEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNA 353
Query: 138 CTHNG 142
C+ G
Sbjct: 354 CSRMG 358
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + ++ Y G ++IA F ++ RD ++T +I G + A+ LF M
Sbjct: 277 DRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFERMH 336
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ + P+E T V +L A + G V+K R+ M
Sbjct: 337 SEGVVPNEVTFVSVLNA--CSRMGLVDKGLRIFENM 370
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 52/192 (27%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++++SW +++GY+ G VD AR+ F +MPER+ V WT MI G ++ R ++AL LF E
Sbjct: 96 DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHE 155
Query: 63 MQTSNIRPDEFTIVRILTA-------------------------------------YMYC 85
M+ + ++ D+ +V L+A +MY
Sbjct: 156 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 215
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI---------------RPDEVT 130
CG ++KA +V M ++ +WT+MI G A RPD +T
Sbjct: 216 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 275
Query: 131 YVGVLSACTHNG 142
++GVL AC+H G
Sbjct: 276 FIGVLCACSHAG 287
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ---TS 66
++ Y + G +D A + F M +R + WT+MI G+ + EAL +F MQ T
Sbjct: 208 NSLIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTD 267
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
RPD T + +L A + G V++ + M +K
Sbjct: 268 EGRPDGITFIGVLCACSH--AGFVDQGRHFFECMNKK 302
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 21/114 (18%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A+ GY + R+A +F E+ NI + +L Y+ +CGDV+ A+R+ +M
Sbjct: 76 AIAGGY---DGVRKARRVFDEIVDRNI----VSWNSLLAGYV--RCGDVDGARRIFDEMP 126
Query: 102 RKDKFTWTAMIVGLA-------ISDPFPTIRP-----DEVTYVGVLSACTHNGN 143
++ +WT MI G A F +R D+V V LSAC G+
Sbjct: 127 ERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 180
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 52/192 (27%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++++SW +++GY+ G VD AR+ F +MPER+ V WT MI G ++ R ++AL LF E
Sbjct: 198 DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHE 257
Query: 63 MQTSNIRPDEFTIVRILTA-------------------------------------YMYC 85
M+ + ++ D+ +V L+A +MY
Sbjct: 258 MRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYA 317
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI---------------RPDEVT 130
CG ++KA +V M ++ +WT+MI G A RPD +T
Sbjct: 318 SCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGIT 377
Query: 131 YVGVLSACTHNG 142
++GVL AC+H G
Sbjct: 378 FIGVLCACSHAG 389
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ---TSNI 68
++ Y + G +D A + F M +R + WT+MI G+ + EAL +F MQ T
Sbjct: 312 LIHMYASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEG 371
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
RPD T + +L A + G V++ + M +K
Sbjct: 372 RPDGITFIGVLCACSH--AGFVDQGRHFFECMNKK 404
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 21/114 (18%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A+ GY + R+A +F E+ NI + +L Y+ +CGDV+ A+R+ +M
Sbjct: 178 AIAGGY---DGVRKARRVFDEIVDRNI----VSWNSLLAGYV--RCGDVDGARRIFDEMP 228
Query: 102 RKDKFTWTAMIVGLA-------ISDPFPTIRP-----DEVTYVGVLSACTHNGN 143
++ +WT MI G A F +R D+V V LSAC G+
Sbjct: 229 ERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 282
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 49/182 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ---TS 66
T ++S Y + G VD+AR FA MPER+ + W+ MI+GY+R +++EAL LF EMQ +
Sbjct: 103 TSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVN 162
Query: 67 NIRPDEFTIVRILTAY---------------------------------MYCKCGDVEKA 93
++RP+EFT+ +L A MY KCG VEKA
Sbjct: 163 DVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKA 222
Query: 94 QRVLRKM-LRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTH 140
V + KD W+AMI GLA+ +RP+ VT++ V AC H
Sbjct: 223 TWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVH 282
Query: 141 NG 142
G
Sbjct: 283 GG 284
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV+ T ++ Y G V+ A F+ + P +D + W+AMI G E + LF +M
Sbjct: 202 DVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKM 261
Query: 64 QTSNIRPDEFTIVRILTAYMYCKC---GDVEKAQRVLRKM 100
+RP+ T + + +C C G V + + LR+M
Sbjct: 262 INQGVRPNAVTFLAV-----FCACVHGGLVSEGKDYLRRM 296
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SG++ GQ+ AR F +M ++ WTA++ GY R+ + +AL F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
MQ I PDE ++V +L A MY KC
Sbjct: 238 RRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKC 297
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +++ +R+ +M +D +W+ MIVGLA I P+ +T+VG+L
Sbjct: 298 GSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLL 357
Query: 136 SACTHNG 142
SAC H G
Sbjct: 358 SACAHAG 364
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D R+ F QM ERD + W+ MI G R EA+ LF EMQ + I P+
Sbjct: 290 LIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPN 349
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA-------- 116
T V +L+A + G + + R M R + + ++GL+
Sbjct: 350 IITFVGLLSACAH--AGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALE 407
Query: 117 ISDPFPTIRPDEVTYVGVLSAC-THNGNETFVI 148
+ P ++PD + +LS+C +H+ E VI
Sbjct: 408 LIKKMP-MKPDSAIWGSLLSSCRSHSNLEIAVI 439
>gi|326498517|dbj|BAJ98686.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 647
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW +++GY+ G V+ A F+ MP++D V W+ MI G ++ N+ ALT+F M+
Sbjct: 331 DQFSWNSMIAGYLKNGHVENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMR 390
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPDE TIV +++A MY KCG +E
Sbjct: 391 AQGVRPDEVTIVSVISACTNLSALEKGKSVHDYVRQNKCYITLVLGTSLIDMYMKCGYLE 450
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSAC 138
A V M K W A+IVGLA++ + T P+E+T+ GVLSAC
Sbjct: 451 AAMDVFNIMEEKGAPCWNAVIVGLAMNGLVTKSLEIFSEMEASSTAIPNEITFTGVLSAC 510
Query: 139 THNG 142
H G
Sbjct: 511 RHAG 514
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 82/243 (33%), Gaps = 107/243 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++ Y++ G VD A FA+MP+R
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVGVFARMPKRNATAVSSMVSLFGRRGMVEEARGVFDEAE 227
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D WTAMI + R + F EAL +F M+ DE +V ++ A
Sbjct: 228 CRDIFTWTAMISCFERNDMFAEALHMFSCMRREMWPVDEALMVSVVAACAQSEVIRNGEL 287
Query: 82 ---------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
+MY C DV A+R+ D+F+W +MI G
Sbjct: 288 CHGLVIRAGLCSLLNIQNVLIHMYSCCLDVVAARRLFDSGDCLDQFSWNSMIAGYLKNGH 347
Query: 115 ----LAISDPFPT---------------------------------IRPDEVTYVGVLSA 137
+ + P +RPDEVT V V+SA
Sbjct: 348 VENAMTLFSAMPDKDNVSWSTMISGCVQNNQSSHALTVFDNMRAQGVRPDEVTIVSVISA 407
Query: 138 CTH 140
CT+
Sbjct: 408 CTN 410
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW ++ GY V+ A F+QMP RD + WT MI Y + +FREAL +F
Sbjct: 102 MPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVF 161
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQT+ I PDE T+ I++A MY KC
Sbjct: 162 NEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKC 221
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++K+ V K+ +K+ F W ++I GLA+ I+P+ VT++ VL
Sbjct: 222 GSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVL 281
Query: 136 SACTHNG 142
ACTH G
Sbjct: 282 GACTHAG 288
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G +D + F ++ +++ W ++I+G EAL +F MQ
Sbjct: 207 DVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQ 266
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
I+P+ T + +L A + G VE+ ++ M R + + ++G A
Sbjct: 267 REKIKPNGVTFISVLGACTH--AGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAG 324
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
+ D +R P+ V + +L C + N
Sbjct: 325 LLEDALELVRSMRMEPNSVIWGALLGGCKLHRN 357
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT ++ G VD AR +F MPER+ V W MI Y++ ++ EAL L+
Sbjct: 207 MPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLY 266
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ+ PDE T+V +L+A MY KC
Sbjct: 267 KQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKC 326
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPTIR-------PDEVTYVGVLS 136
G V+ A R+ R+M ++ +W +I GLA+ D R PD +T+V +LS
Sbjct: 327 GQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRNTSPDGITFVALLS 386
Query: 137 ACTHNG 142
+C+H G
Sbjct: 387 SCSHGG 392
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 33/134 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y + G + +R++F +M R+ V W +MI GY + REA LF EM+ D
Sbjct: 86 LLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGD 145
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT+ +L A MY KCGD+ A+R
Sbjct: 146 EFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFE 205
Query: 99 KMLRKDKFTWTAMI 112
M K +WT+M+
Sbjct: 206 MMPIKSVVSWTSML 219
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N D+ ++ Y GQVD A + F +M R+ V W +I G R +A+T F
Sbjct: 308 IHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFF 367
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR----KDKFTWTAMIVGL- 115
M N PD T V +L++ + G +E Q M K + A +V L
Sbjct: 368 RSM-VRNTSPDGITFVALLSSCSH--GGLLETGQHYFESMRHVYNVKHEVEHYACMVDLL 424
Query: 116 ----------AISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P ++PD V + +L AC +GN
Sbjct: 425 GRRGHLEKAVCLIKEMP-MKPDVVVWGALLGACRIHGN 461
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y GQ++ AR+ F ++P R+ V WT+MI GY + + F+EA+ LF EMQ
Sbjct: 265 DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQ 324
Query: 65 TSNIRPDEFTIVRILTA-------------YMYC--------------------KCGDVE 91
D TI +L+A ++YC KCGD++
Sbjct: 325 IGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQ 384
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSAC 138
KA + + + D F+W+A+I GLA++ + IRP+E+T++GVL AC
Sbjct: 385 KALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCAC 444
Query: 139 THNG 142
H G
Sbjct: 445 NHGG 448
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 48/186 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV ++S + + G V+ AR F +P RD V W +MI GYL+ +R+ AL +F E
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWE 220
Query: 63 -MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+ ++ PDE T+V L+ MY KCG
Sbjct: 221 LLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCG 280
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
+E A++V ++ ++ WT+MI G A SD F D T VLS
Sbjct: 281 QIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLS 340
Query: 137 ACTHNG 142
AC H G
Sbjct: 341 ACGHWG 346
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ SW +++G G + AR+ F +M ERD + W++M+DGY+ R++EAL +F
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIF 282
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ RP F + +L A MY KC
Sbjct: 283 QQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G ++ V +M ++ FTW AMI GLAI + F + +P+ +T VGVL
Sbjct: 343 GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVL 402
Query: 136 SACTHNG 142
+AC H G
Sbjct: 403 TACAHAG 409
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G++D+ + F +M ER+ W AMI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAISD 119
++P+ T+V +LTA + G V+K R+ + M + + + M+ L S
Sbjct: 388 EGRMKPNGITLVGVLTACAH--AGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSG 445
Query: 120 PFPT---------IRPDEVTYVGVLSACTHNGN 143
F ++P+ + +L AC +GN
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALLGACRIHGN 478
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+++W ++ G G VD +R+ F +M R+ V W +MI GY+R RF +AL LF +MQ
Sbjct: 187 DIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQ 246
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I P EFT+V +L A MY KCG ++
Sbjct: 247 VERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSID 306
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
KA +V + R+ W +MI+GLA++ +RPD+V+++ VL+AC
Sbjct: 307 KAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACD 366
Query: 140 HNG 142
H G
Sbjct: 367 HTG 369
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T I+ Y G +D A Q F P R W +MI G + EAL LF +Q+S++R
Sbjct: 293 TAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSSDLR 352
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK---------FTWTAMIVGLA--IS 118
PD+ + + +LTA + G V+KA+ +L +DK F+ ++G A +
Sbjct: 353 PDDVSFIAVLTACDH--TGMVDKAKDYF--LLMRDKYKIKPGIKHFSCMVDVLGRAGLLE 408
Query: 119 DPFPTIR-----PDEVTYVGVLSACTHNGN 143
+ IR PD + + +L +C GN
Sbjct: 409 EAEELIRSMHVDPDAIIWGSLLWSCCKYGN 438
Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PERDYVLWTAMIDGYLRVNRF 53
++N ++ +W I+ G+ + + M P+R + + ++ + +++
Sbjct: 81 IQNPNIFAWNTIIRGFSRSSVPQNSISLYIDMLLTSPVQPQR--LTYPSVFKAFAQLDLA 138
Query: 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
E L +M + D F +R +MY CG +A++V + + D W MI+
Sbjct: 139 SEGAQLHGKMIKLGLENDSF--IRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIM 196
Query: 114 GLA 116
G+A
Sbjct: 197 GVA 199
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ +++ Y G++ AR F +MP R+ V W+AM++GY++ REAL +F MQ
Sbjct: 142 DASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQ 201
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++RPD+ +V +L A MY KCG+V+
Sbjct: 202 AEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQ 261
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V +M K+ WT MI GLA+ IRPD++ ++GVL ACT
Sbjct: 262 LAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACT 321
Query: 140 HNG 142
H G
Sbjct: 322 HAG 324
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V +A F +M ++ + WT MI G R EA+ LF +M++S IR
Sbjct: 248 TALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIR 307
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PD+ + +L A + G V+K + + M+RK
Sbjct: 308 PDDIAFIGVLCACTH--AGLVDKGRELFDSMVRK 339
>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
Length = 650
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW ++SGY+ G+V+ A+ F MP++D V W+AMI G ++ N+ EALT+F M+
Sbjct: 334 DHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMR 393
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+PDE T+V +++A MY KCG +E
Sbjct: 394 AHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNITIVLGTSLIDMYMKCGCME 453
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR------PDEVTYVGVLSAC 138
A V + K W A+IVGLA++ D F + P E+T+ GVLSAC
Sbjct: 454 AALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMETSGIAVPSEITFTGVLSAC 513
Query: 139 THNG 142
H G
Sbjct: 514 RHGG 517
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/243 (24%), Positives = 83/243 (34%), Gaps = 107/243 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++ Y+ G V+ A FA+MPER
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVGVFARMPERSAAAVSSMVALFARTGMVEEARGVFDGAE 230
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D WTAMI + R + F EAL +F +M+ DE +V ++ A
Sbjct: 231 HRDAFTWTAMISCFERNDLFVEALAVFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEV 290
Query: 82 ---------------------YMYCKC-------------------------------GD 89
+MY C G
Sbjct: 291 CHGLVVRAGLGSRVNVQNALIHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGR 350
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSA 137
VE A+ + M KD +W+AMI G L + D I+PDEVT V V+SA
Sbjct: 351 VEDAKALFNVMPDKDNVSWSAMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISA 410
Query: 138 CTH 140
CT+
Sbjct: 411 CTN 413
Score = 40.8 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N ++ T ++ Y+ G ++ A + F + E+ W A+I G +L +F E
Sbjct: 433 NITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSE 492
Query: 63 MQTSNIR-PDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRK 103
M+TS I P E T +L+A C+ G VE+ ++ + M K
Sbjct: 493 METSGIAVPSEITFTGVLSA---CRHGGLVEEGRQFFKLMQNK 532
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 46/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y G+++ AR+ F + P +D V W A+I GY+ N REAL LF
Sbjct: 199 MPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELF 258
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM PDE T++ +L+A MY K
Sbjct: 259 DEMCGVGECPDEVTMLSLLSACADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAK 318
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG++ KA RV + KD +W ++I GLA + PDEVT+VGV
Sbjct: 319 CGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGV 378
Query: 135 LSACTHNGN 143
L+AC+H GN
Sbjct: 379 LAACSHAGN 387
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + +A F + D V W+A+I GY + A LF EM ++ I
Sbjct: 156 GDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMIT--- 212
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPTIR--PD 127
+Y K G++E A+R+ + KD +W A+I G L + D + PD
Sbjct: 213 ---VYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPD 269
Query: 128 EVTYVGVLSACTHNGN 143
EVT + +LSAC G+
Sbjct: 270 EVTMLSLLSACADLGD 285
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + A + F + ++D V W ++I G E+L LF EM+ + + PD
Sbjct: 312 LVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPD 371
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI---------SDPFP 122
E T V +L A + G+V++ R M K K T G + + F
Sbjct: 372 EVTFVGVLAACSH--AGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFN 429
Query: 123 -----TIRPDEVTYVGVLSACTHNGN 143
I P+ + + +L AC +G+
Sbjct: 430 FIASMKIEPNAIVWRSLLGACKVHGD 455
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 33/125 (26%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT---------- 74
A Q FAQ+P+ D +W I G + + A+ L+ +M +++PD FT
Sbjct: 60 ALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTK 119
Query: 75 -----------------------IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
+VR + KCGD++ A + + D W+A+
Sbjct: 120 LFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSAL 179
Query: 112 IVGLA 116
I G A
Sbjct: 180 IAGYA 184
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY ++EAL LF E
Sbjct: 197 HRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKE 256
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +NIRPDE T+V +++A +Y KCG+
Sbjct: 257 MMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGE 316
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A + +L KD +W +I G + + RP++VT + +L A
Sbjct: 317 LETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPA 376
Query: 138 CTHNG 142
C H G
Sbjct: 377 CAHLG 381
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 80/174 (45%), Gaps = 47/174 (27%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+++ A F + +D + W +I GY +N ++EAL LF EM S RP++ T+
Sbjct: 311 YSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTM 370
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
+ IL A MY KCGD+E A +V +
Sbjct: 371 LSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSI 430
Query: 101 LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
L K +W AMI G A+ D F +R PD++T+VG+LSAC+ +G
Sbjct: 431 LHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSG 484
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F + + W AMI G+ R A +F M+ I
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIE 467
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M + K T + MI L S F
Sbjct: 468 PDDITFVGLLSA--CSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEA 525
Query: 123 -------TIRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC GN E+F N
Sbjct: 526 EEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQN 563
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y G V+ AR+ F M ER+ V WT+MI GY ++ +F+EA+ LF +MQ + ++
Sbjct: 235 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMK 294
Query: 70 PDEFTIVRILT---------------AY------------------MYCKCGDVEKAQRV 96
D+ TI +++ AY MY KCGD+ KA +
Sbjct: 295 VDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEI 354
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSACTHNG 142
+ ++D F+WTAMI+G ++ D F + P+EVT++GVL++C+H G
Sbjct: 355 FCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGG 413
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 40/165 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMI----DGYLRVNRFRE 55
D +SW I+SGY+ G + A Q F QM + D L A++ G ++V R
Sbjct: 160 DTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCH 219
Query: 56 ALTLFP------EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT 109
+L + M +S I MY KCG VE A++V M ++ WT
Sbjct: 220 SLVVVNGAGINCYMGSSLIS-------------MYAKCGLVEDARKVFHGMHERNVVCWT 266
Query: 110 AMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
+MI G F ++ D+ T V+S+C G
Sbjct: 267 SMISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMG 311
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ-TSNIRP 70
++ Y G ++ A + F + +RD WTAMI G+ EAL LF +M+ + P
Sbjct: 338 LIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMP 397
Query: 71 DEFTIVRILTAYMYCKCGD-VEKAQRVLRKM 100
+E T + +LT+ C G VE+ ++M
Sbjct: 398 NEVTFLGVLTS---CSHGGLVEQGFHYFQRM 425
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ SW +++G G + AR+ F +M ERD + W++M+DGY+ R++EAL +F
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIF 282
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ RP F + +L A MY KC
Sbjct: 283 QQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKC 342
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G ++ V +M ++ FTW AMI GLAI + F + +P+ +T VGVL
Sbjct: 343 GRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVL 402
Query: 136 SACTHNG 142
+AC H G
Sbjct: 403 TACAHAG 409
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y G++D+ + F +M ER+ W AMI G R +AL LF ++Q
Sbjct: 328 DAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQ 387
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAISD 119
++P+ T+V +LTA + G V+K R+ + M + + + M+ L S
Sbjct: 388 EGRMKPNGITLVGVLTACAH--AGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSG 445
Query: 120 PFPT---------IRPDEVTYVGVLSACTHNGN 143
F ++P+ + +L AC +GN
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALLGACRIHGN 478
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +V+GY G ++ AR++F Q P ++ V W+AMI GY + N+ +E+L LF
Sbjct: 419 MATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLF 478
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + P E T+V +L+A MY K
Sbjct: 479 HEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAK 538
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG ++ A V M ++ +W MI G A + + F +R P+ +T+V +
Sbjct: 539 CGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSL 598
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 599 LTACSHGG 606
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 33/147 (22%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y RG + ARQ F + ++D V WT MIDGY + EA+ +F M S++ P+
Sbjct: 298 LIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPN 357
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T++ +++A MY KC + A+ +
Sbjct: 358 EVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFD 417
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPTIR 125
+M KD ++WT+M+ G A + R
Sbjct: 418 RMATKDVYSWTSMVNGYAKCGDLESAR 444
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
IV Y G +D A + F+ MPER+ + W MI GY R ++A+ +F +M+ P+
Sbjct: 532 IVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPN 591
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----DKFTWTAMIVGLA----ISDPFP 122
T V +LTA + G + + + M RK ++ + M+ L + + +
Sbjct: 592 NITFVSLLTACSH--GGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYK 649
Query: 123 TI-----RPDEVTYVGVLSACTHNGN 143
I +P E + +L+AC +GN
Sbjct: 650 LIANMPMQPCEAAWGALLNACRMHGN 675
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 22/143 (15%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+VS + G +++ ++ ++ E++ L A++D Y++ + +A LF M T +
Sbjct: 364 VVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKD 423
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTIR- 125
+ ++ ++ Y KCGD+E A+R + RK+ W+AMI G + ++ P +++
Sbjct: 424 V----YSWTSMVNGY--AKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKL 477
Query: 126 ----------PDEVTYVGVLSAC 138
P E T V VLSAC
Sbjct: 478 FHEMMERGVVPIEHTLVSVLSAC 500
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 62/171 (36%), Gaps = 45/171 (26%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
+ G + A F ++ + + +W MI GY + A + F M + D + V
Sbjct: 203 HSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVF 262
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKD 104
L A + Y + G ++ A++V + KD
Sbjct: 263 ALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322
Query: 105 KFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACTHNGN 143
TWT MI G A D + P+EVT + V+SAC+ GN
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGN 373
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 89/178 (50%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V+ Y ++ IAR+ F ++ ER+ V W+AM+ GY R+ EAL +F EMQ I
Sbjct: 131 SSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIE 190
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PDE ++V +L+A MY KCG +EKA+ +
Sbjct: 191 PDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREI 250
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVLSACTHNG 142
+M KD W++MIVGLAI + F + +P+ VT++G+LSAC H G
Sbjct: 251 FDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGG 308
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SWT +++ Y N V+ AR+ F +MPER V ++AM+ Y+R NRFREAL LF
Sbjct: 148 MGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVVSYSAMLAAYVRGNRFREALELF 207
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
E+ + I P + ++ +L A M+ K
Sbjct: 208 RELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSFVCHSKGDYVDSRIATALIDMFFK 267
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
CG +E A V K WTAM+ GLA+ + F I+PDEVT+V +
Sbjct: 268 CGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVAL 327
Query: 135 LSACTHNG 142
LS C+H+G
Sbjct: 328 LSGCSHSG 335
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 45/180 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +S+T +++GY+++G +D AR+ F ++P +D V W AMI GY++ RF EA+ F EM
Sbjct: 195 RDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEM 254
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q +N+ P++ T+V +L+A MYCKCG+
Sbjct: 255 QEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGET 314
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
+ A+ + + KD +W MI G + + ++P++VT++G+L AC
Sbjct: 315 DIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHAC 374
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ DIAR+ F + E+D + W MI GY ++ + EAL LF M SN++P+
Sbjct: 304 LIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPN 363
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
+ T + IL A MY KCG +E A+RV
Sbjct: 364 DVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVF 423
Query: 98 RKMLRKDKFTWTAMIVGLAISDP-------FPTI------RPDEVTYVGVLSACTHNG 142
R M ++ +W AM+ G A+ F + RPD++T+VGVLSACT G
Sbjct: 424 RSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG 481
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT ++ Y G ++ A + F M R+ W AM+ G+ AL LF EM +
Sbjct: 403 WTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGL 462
Query: 69 -RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP 122
RPD+ T V +L+A + G V+ + R M++ + + MI LA ++ F
Sbjct: 463 FRPDDITFVGVLSACT--QAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFE 520
Query: 123 ---------TIRPDEVTYVGVLSACTHNGNETF 146
+ PD + +LSAC +G F
Sbjct: 521 EAEILMKNMEMEPDGAIWGSLLSACKAHGRVEF 553
Score = 42.4 bits (98), Expect = 0.063, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 49/143 (34%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y + G++D AR F + RD V +TA+I GY+
Sbjct: 170 TSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQ------------------- 210
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
G ++ A+R+ ++ KD +W AMI G S F
Sbjct: 211 ------------------GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFY 252
Query: 122 ----PTIRPDEVTYVGVLSACTH 140
+ P++ T V VLSAC H
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGH 275
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+DV+ WT ++ GY G V+ AR F MPER+ + W+A++ Y RV F+E L LF
Sbjct: 177 NRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRR 236
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + P+E +V +LTA MY KCG
Sbjct: 237 MQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGC 296
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTI-----------RPDEVTYVGVLSA 137
VE A + + KD W AMI G+A++ D + ++ +P E T+V VL+A
Sbjct: 297 VESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTA 356
Query: 138 CTH 140
CTH
Sbjct: 357 CTH 359
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G V+ A F +P +D W AMI G ++L LF +M ++ +
Sbjct: 285 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 344
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P E T V +LTA + + V++ ++ +M
Sbjct: 345 PTETTFVAVLTACTHARL--VKEGLKLFEQM 373
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 87/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T +++ Y QV +AR F M P++ V W+AMI+GY RV EAL LF EMQ +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMINGYSRVGMVTEALGLFREMQAVGV 224
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
PDE T+V +++A MY KCG +E+A+
Sbjct: 225 EPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 96 VLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
V M+ KD W+AMIVG AI D +RP+ VT++GVLSAC H+G
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 343
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 45/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++I T ++ Y+ G VD R F M RD V W+AMI GY + R EAL LF M
Sbjct: 261 SNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENM 320
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+++ I+P++ T+V +L+A MY KCG++
Sbjct: 321 KSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNI 380
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGVLSAC 138
KA+++ K+ ++D TW +MI+GLAI+ D ++P+ +T+VG+++AC
Sbjct: 381 IKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTAC 440
Query: 139 THNGN 143
TH G+
Sbjct: 441 THAGH 445
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 45/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD I++ ++S Y G+V AR+ F +M +R V W AMI Y + + + +F M
Sbjct: 160 KDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRM 219
Query: 64 QTSNIRPDEFTIVRILT---------------------------------AYMYCKCGDV 90
Q P+E T+ +L+ MY KCG V
Sbjct: 220 QDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAV 279
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+ + V M R+D TW+AMI G A + I+P++VT V VLSAC
Sbjct: 280 DDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSAC 339
Query: 139 THNGN 143
G+
Sbjct: 340 AQLGS 344
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
+ ++ Y G + ARQ F ++P+RD V W +MI G L +N F E A+ L+ M+ +
Sbjct: 368 SALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMG-LAINGFAEDAIALYNRMKEIEV 426
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+P+ T V ++TA + G VE R M
Sbjct: 427 KPNNITFVGLMTACTH--AGHVELGLEFFRSM 456
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
+N + ARQ F Q+P D + + I Y R++ EAL F M +N+R FTI
Sbjct: 41 LNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIP 100
Query: 77 RILTAYMYCKCGDVEKAQR--VLRKMLRKDKFTWTAMI 112
I + DV K V+R F A+I
Sbjct: 101 PIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALI 138
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ GY +D AR+ F MPE+D V WT MI GY + R+++ L LF
Sbjct: 114 MPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELF 173
Query: 61 PEMQT-SNIRPDEFTIVRILTAY-----------------------------------MY 84
MQT SN++P+E T+V +L+A MY
Sbjct: 174 RAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMY 233
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG + A ++ + RK+ W A+I LA++ D F + +P+++T+V
Sbjct: 234 AKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFV 293
Query: 133 GVLSACTHNG 142
GVL+AC+H G
Sbjct: 294 GVLTACSHGG 303
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW+ +V GY G++D+AR+ F +MP R+ V W +M+ G+ R A
Sbjct: 50 MPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARK 109
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F EM N+ + +L Y D++ A+ + M KD +WT MI G A +
Sbjct: 110 MFDEMPVRNL----VSWNAMLRGYSVNS--DMDGARELFDVMPEKDVVSWTCMISGYAQA 163
Query: 119 DPF-------------PTIRPDEVTYVGVLSACTH 140
+ ++P+EVT V VLSAC +
Sbjct: 164 GRYQDTLELFRAMQTESNVQPNEVTMVSVLSACAN 198
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+ DIA + F + ++ W A+I R+++ F +M+ + +P+
Sbjct: 229 LIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPN 288
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ T V +LTA + G V++ +R + M
Sbjct: 289 DITFVGVLTACSH--GGLVDEGRRCFQSM 315
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPTIRPDEVTYVG 133
Y KCG++E A+RV +M R++ +W+ M+ G A + D P I + VT+
Sbjct: 34 YVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNS 93
Query: 134 VLSACTHNG 142
+++ +G
Sbjct: 94 MVTGFARHG 102
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD +SW ++S + GQ+ AR+ F MP++ V WTA++ GY V F A+ +F
Sbjct: 178 MREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVF 237
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
+MQ PD+ +IV +L A Y YC KC
Sbjct: 238 RQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKC 297
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------------ISDPFPTIRPDEVTYVGV 134
G +E+A ++ M KD +W+ I GLA + D + P+ +T+VG+
Sbjct: 298 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGL 357
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 358 LSACSHAG 365
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 83/172 (48%), Gaps = 45/172 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G +AR F +MPE++ W MI+G++ + + EAL+LF EMQ S ++ D+ T+
Sbjct: 283 YCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 342
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
+L A MY KCG +E A RV ++M
Sbjct: 343 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 402
Query: 103 KDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
KD TWTA+IVGLA+ ++PD +T+VGVL+AC+H G
Sbjct: 403 KDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAG 454
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V Y G ++ A + F +MPE+D + WTA+I G + +AL LF EMQ
Sbjct: 373 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 432
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
S ++PD T V +L A + G V + M K + + ++G A
Sbjct: 433 MSEVKPDAITFVGVLAACSH--AGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAG 490
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
I++ I+ PD VG+LSAC +GN
Sbjct: 491 RIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGN 523
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 45/172 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y N G + AR+ F +M + V W MI Y + + EA+ LF M+ ++++P+E T+
Sbjct: 182 YSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITL 241
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
V +LTA +YCKCG A+ + KM
Sbjct: 242 VNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPE 301
Query: 103 KDKFTWTAMIVG-LAISD-----------PFPTIRPDEVTYVGVLSACTHNG 142
K+ F W MI G + SD ++ D+VT +L ACTH G
Sbjct: 302 KNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLG 353
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 68/179 (37%), Gaps = 44/179 (24%)
Query: 5 DVISWTDIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D S + IV+ + G + AR F Q+P ++I GY N R+A+ +
Sbjct: 71 DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 130
Query: 63 MQTSNIRPDEFTIVRILT-----------------------AY-------MYCKCGDVEK 92
M + PD FT + AY MY CG +
Sbjct: 131 MMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS 190
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A++V KM+ K +W MI A D +++P+E+T V VL+AC
Sbjct: 191 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACA 249
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT ++ GY + G + A F +MP+R+ V W+A+I GY+++ + +AL LF
Sbjct: 228 MPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELF 287
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + ++ DE + +L+A MY KC
Sbjct: 288 KEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKC 347
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G ++ A +V ++ K F W++MI GLA+ + F I P E+TY+ +L
Sbjct: 348 GRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINIL 407
Query: 136 SACTHNG 142
+ACTH+G
Sbjct: 408 AACTHSG 414
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T ++ Y G++D+A + F + ++ +W++MI G L ++ F E A+ LF +M I
Sbjct: 338 TALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGG-LAMHSFGEKAIELFAKMIECGI 396
Query: 69 RPDEFTIVRILTAYMYCKCGDV--EKAQRVLRKMLRKDKFTWTAMIVGL-----AISDPF 121
P E T + IL A + DV + R++ K + IV L + D F
Sbjct: 397 EPSEITYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAF 456
Query: 122 PT-----IRPDEVTYVGVLSACTHNGN 143
++ D + +LSAC + N
Sbjct: 457 RVVETMPVKADPAIWRALLSACKLHRN 483
>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
Length = 514
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 52/191 (27%)
Query: 4 KDVISWTDIVSG-------YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 56
+ V SWT ++G ++ G+ +IA++ F +MP+RD V W +MI GY+R +F EA
Sbjct: 70 RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVRNGKFEEA 129
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAY---------------------------------M 83
L F M +SN+ PD+FT ++TA M
Sbjct: 130 LRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFILSSALIDM 189
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTY 131
Y KCG +E A+ V + R D W ++I GLA+ + PD +T+
Sbjct: 190 YSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVLPDSLTF 249
Query: 132 VGVLSACTHNG 142
+G+L AC+H G
Sbjct: 250 LGILKACSHCG 260
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G+++ A++ F + D +W ++I+G +A+ +F +M+ N+
Sbjct: 184 SALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENVL 243
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGL---- 115
PD T + IL A + CG V++ ++ M ++ + AM+ GL
Sbjct: 244 PDSLTFLGILKACSH--CGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEA 301
Query: 116 -AISDPFPTIRPDEVTYVGVLSAC-THNGNETFVINSCNL 153
A+ P + PD + + +LSAC TH E + N+
Sbjct: 302 YAMITAMP-MEPDVIVWRILLSACRTHRNTELGEVAVANI 340
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +SWT ++ GY N G VD AR+ F +D +W AMI GY++ N F+E L +F
Sbjct: 166 MPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ + + PDE IV IL+A MY KC
Sbjct: 226 RLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKC 285
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++ A+ + +M ++D W AMI G+A+ I+PD +T++ VL
Sbjct: 286 GHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVL 345
Query: 136 SACTHNG 142
+AC+++G
Sbjct: 346 AACSNSG 352
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G +D+A+ F +M +RD V W AMI G A+ LF EM+ + I+
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T + +L A G V++ R+ +M
Sbjct: 336 PDNITFIAVLAA--CSNSGMVDEGIRIWNRM 364
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 44/130 (33%), Gaps = 49/130 (37%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
ARQ F +MPE V WT MI Y Y
Sbjct: 159 ARQVFDEMPELSAVSWTVMI-------------------------------------YGY 181
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYV 132
GDV+ A+ + KD W AMI G ++ F + PDE V
Sbjct: 182 ANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIV 241
Query: 133 GVLSACTHNG 142
+LSAC H G
Sbjct: 242 TILSACAHMG 251
>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 528
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KDV+ WT +V GY G ++ AR F +MPER+ + W+AM+ Y RV+ FRE L LF +
Sbjct: 174 GKDVVVWTVMVDGYGKVGDIESARVLFDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQ 233
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ NI P++ I +LTA MY KCG
Sbjct: 234 MQKKNIVPNDSVIASVLTACAHLGAITQGLWMHSYAKRYGLDSNPILATALVDMYSKCGY 293
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+E A V + KD W AMI G A++ + E T+V +L+A
Sbjct: 294 IESALEVFEGISNKDAGAWNAMISGFAMTGNVVKSLELFDKMIASGTQATEATFVSILAA 353
Query: 138 CTH 140
CTH
Sbjct: 354 CTH 356
>gi|356570285|ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 474
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 91/182 (50%), Gaps = 45/182 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V +WT +++G++ G++D AR+ F QMP ++ V WTA+IDGY++ + EA LF M
Sbjct: 186 RNVFAWTTVIAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERM 245
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q N+RP+E+T+V ++ A MY KCG++
Sbjct: 246 QADNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNL 305
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS---DPFPTI---------RPDEVTYVGVLSAC 138
+ A+ V M + TW MI L + D +I PD +T+VGVLSAC
Sbjct: 306 DDARTVFDMMQMRTLATWNTMITSLGVHGYRDEALSIFEEMEKANEVPDAITFVGVLSAC 365
Query: 139 TH 140
+
Sbjct: 366 VY 367
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFPEMQTSNI 68
T ++ Y G +D AR F M R W MI L V+ +R EAL++F EM+ +N
Sbjct: 293 TALIDMYSKCGNLDDARTVFDMMQMRTLATWNTMITS-LGVHGYRDEALSIFEEMEKANE 351
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T V +L+A +Y D+E AQ+ M
Sbjct: 352 VPDAITFVGVLSACVYMN--DLELAQKYFNLM 381
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + M++ Y + + +F +M N+ F ++ ++ CG ++ A+
Sbjct: 156 DLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNV----FAWTTVIAGFV--ACGKLDTARE 209
Query: 96 VLRKMLRKDKFTWTAMIVG-------LAISDPFP-----TIRPDEVTYVGVLSACTHNGN 143
+ +M K+ +WTA+I G + D F +RP+E T V ++ ACT G+
Sbjct: 210 LFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRACTEMGS 269
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT ++ G+ G V+ AR+ F QMPE++ V W+ MI GY + N F +A+ LF +Q
Sbjct: 184 DVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQ 243
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +R +E +V ++++ MY +CG ++
Sbjct: 244 SQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSID 303
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
KA V + +D +WTA+I GLA+ F T + P ++T+ VLSAC+
Sbjct: 304 KAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACS 363
Query: 140 HNG 142
H G
Sbjct: 364 HGG 366
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++I T +V Y G +D A F +PERD + WTA+I G +L F M
Sbjct: 285 NLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMV 344
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDK 105
+ + P + T +L+A C G VE+ ++ M R +
Sbjct: 345 EAGLTPRDITFTAVLSA---CSHGGLVERGFQIFESMKRDHR 383
>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VISWT ++ Y + ++ AR +F MP+R+ V W +MI Y + +F E+L LF
Sbjct: 188 MPEKNVISWTSMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLF 247
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------YMYCKCG 88
+MQ+ + PD +T V +L+A MY +CG
Sbjct: 248 VQMQSEGVTPDGYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCG 307
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
DV+KA V K+ ++D F W +I LA+ ++P++ T+ L
Sbjct: 308 DVDKAFAVFIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALF 367
Query: 137 ACTHNG 142
AC+H G
Sbjct: 368 ACSHGG 373
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W ++ Y+N G V AR+ F MPERD V W +MI GY + + A LF +M N+
Sbjct: 134 WNQMIGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNV 193
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------- 121
+ ++ A Y D+E A+ M +++ +W +MI A F
Sbjct: 194 ----ISWTSMIGA--YADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLF 247
Query: 122 -----PTIRPDEVTYVGVLSACTHNGNETF 146
+ PD T+V VLSAC++ G+ F
Sbjct: 248 VQMQSEGVTPDGYTFVSVLSACSNLGDLEF 277
Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 22 VDIARQYFAQM---PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74
+D + F+QM + V+W AMI GY F+E + +F EM ++P FT
Sbjct: 1 MDYSNLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFT 56
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW+ ++ ++ G++++AR+ F +MP+RD V WTAM+ GY + R REAL LF EM+
Sbjct: 176 DVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMR 235
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S + PDE T+V +++A MY KCG +E
Sbjct: 236 RSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMYGKCGCLE 295
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSACT 139
+A RV M RK TW M+ A + F + PD VT + +L A
Sbjct: 296 EAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPDSVTLLALLVAYA 355
Query: 140 HNG 142
H G
Sbjct: 356 HKG 358
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 12/72 (16%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTY 131
+ K G++E A+RV +M ++D +WTAM+ G + + + F +R PDEVT
Sbjct: 187 HVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREALELFGEMRRSGVWPDEVTM 246
Query: 132 VGVLSACTHNGN 143
V ++SAC G+
Sbjct: 247 VSLVSACASLGD 258
Score = 35.8 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ A + F M + + W M+ EA LF M S + PD
Sbjct: 284 LIDMYGKCGCLEEAWRVFHGMTRKSLITWNTMVTVCANYGNADEAFRLFEWMVCSGVVPD 343
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T++ +L AY + G V++ R+ M R
Sbjct: 344 SVTLLALLVAYAH--KGLVDEGIRLFESMDR 372
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ YI G+++ A+ F +MPERD V W +MI GY+++ + AL LF
Sbjct: 211 MPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYARALALF 270
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ +N+ + T++ +L A MY KC
Sbjct: 271 REMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKC 330
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTI-------RPDEVTYVG 133
G + A V ++ K W AMIV LA+ F T+ RP+ VT++G
Sbjct: 331 GHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIG 390
Query: 134 VLSACTHNG 142
VL AC+H G
Sbjct: 391 VLIACSHKG 399
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D +V Y G +D+AR+ F +M E+ W MI Y ++N F A +L
Sbjct: 151 DQDCFIQNSLVYLYSQCGFLDLARRVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGS 210
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISD-- 119
M N+ I R Y + G +E A+ V ++M +D +W +MI G + I D
Sbjct: 211 MPGKNVVSWNMLIAR------YIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQIKDYA 264
Query: 120 ---------PFPTIRPDEVTYVGVLSACTHNG 142
+ ++T + VL AC G
Sbjct: 265 RALALFREMEIANVEATDITLISVLGACAETG 296
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV+SW ++S + GQ+ AR+ F MP++ V WTA++ GY V F A+ +F
Sbjct: 177 MREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVF 236
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
MQ PD+ +IV +L A Y YC KC
Sbjct: 237 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKC 296
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------------ISDPFPTIRPDEVTYVGV 134
G +E+A ++ M KD +W+ I GLA + D + P+ +T+VG+
Sbjct: 297 GCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGL 356
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 357 LSACSHAG 364
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+DV+ WT ++ GY G V+ AR F MPER+ + W+A++ Y RV F+E L LF
Sbjct: 449 NRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRR 508
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + P+E +V +LTA MY KCG
Sbjct: 509 MQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGC 568
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTI-----------RPDEVTYVGVLSA 137
VE A + + KD W AMI G+A+ D + ++ +P E T+V VL+A
Sbjct: 569 VESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTA 628
Query: 138 CTH 140
CTH
Sbjct: 629 CTH 631
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G V+ A F +P +D W AMI G ++L LF +M ++ +
Sbjct: 557 TALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQ 616
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P E T V +LTA + + V + ++ +M
Sbjct: 617 PTETTFVAVLTACTHARL--VREGLKLFEQM 645
>gi|255556578|ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541638|gb|EEF43187.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 45/190 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ISWT ++SGY G VD A + F MPER+ W AMI Y++ NRF E+ LF
Sbjct: 205 MPEQNFISWTTLISGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ + D+F +L+A MYCKC
Sbjct: 265 DRMRAEGVVLDKFVAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKC 324
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +EKA V + + K +W MI GLA+ + PD +T+V +L
Sbjct: 325 GSLEKALEVFKGLPHKGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNLL 384
Query: 136 SACTHNGNET 145
SAC H+ ++
Sbjct: 385 SACAHSEKKS 394
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++ +W ++ GY +VD+A F QMP RD + WT MI+ Y + RFREAL +F
Sbjct: 172 MPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVF 231
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM I PDE T+ +++A MY KC
Sbjct: 232 NEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKC 291
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++++ + K+ K+ F W ++I GLA+ I+P+ VT+V VL
Sbjct: 292 GSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVL 351
Query: 136 SACTHNG 142
SAC H G
Sbjct: 352 SACNHAG 358
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ V T +V Y + G+++ + + F +MPERD WT M+ G +RV A LF
Sbjct: 112 DSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDM 171
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI---------- 112
M N+ I Y + +V+ A+ + +M +D +WT MI
Sbjct: 172 MPDRNLATWNTLIDG------YARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFR 225
Query: 113 --VGLAISDPFPTIRPDEVTYVGVLSACTHNG 142
+G+ I PDEVT V+SAC H G
Sbjct: 226 EALGVFNEMAKHGISPDEVTMATVISACAHLG 257
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV + ++ Y G +D + F ++ E++ W ++I+G EAL +F +
Sbjct: 275 NLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDK 334
Query: 63 MQTSNIRPDEFTIVRILTAYMYC-KCGDVEKAQRVLRKMLR 102
M+ I+P+ T V +L+A C G +E+ ++ M R
Sbjct: 335 MEREKIKPNGVTFVSVLSA---CNHAGLIEEGRKRFASMTR 372
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 58/146 (39%), Gaps = 33/146 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+D +S ++D A + QM + ++ AMI G+++ + +AL L+ +
Sbjct: 11 NQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQ 70
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+ P +T ++ A Y G
Sbjct: 71 MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGR 130
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGL 115
+E++ RV +M +D F WT M+ GL
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGL 156
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 48/187 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ +W +++GY G ++ A + F MP+R+ V WTAMI GY + R+ +AL LF +M
Sbjct: 146 RDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKM 205
Query: 64 QTSN-IRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ N +RP+E TI IL A MY +CG
Sbjct: 206 EKENGLRPNEVTIASILPACANLGALEVGDRIETYARENGLLRNLYVSNALLEMYARCGK 265
Query: 90 VEKAQRVLRKML--RKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVL 135
++ A++V K++ R++ +W +MI+GLAI I PD+VT+VG+L
Sbjct: 266 IDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIEGIAPDDVTFVGIL 325
Query: 136 SACTHNG 142
ACTH G
Sbjct: 326 LACTHGG 332
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++GY+ +G+++ AR F + P +D V W AMI GY+ ++AL LF
Sbjct: 200 MPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELF 259
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + + PDE T++ +L+A MY K
Sbjct: 260 NEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAK 319
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
CG+++++ V + KD +W ++IVG+A+ I P+E+T+VGV
Sbjct: 320 CGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGV 379
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 380 LVACSHAG 387
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + + F + ++D + W ++I G +E+L+LF MQ + I P+
Sbjct: 313 LIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPN 372
Query: 72 EFTIVRILTAYMYCKCGDVEKAQR 95
E T V +L A + G++++ +
Sbjct: 373 EITFVGVLVACSH--AGEIDEGYK 394
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ ++ GY G + AR+ F +MP ++ V WTAMI+GY + +E+L LF
Sbjct: 205 MPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALF 264
Query: 61 PEMQTSNIRPDEFTIV-------------------------------RILTAY--MYCKC 87
EM+ + I PD T+V ++LTA M+ KC
Sbjct: 265 REMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKC 324
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G+V++A R++ + D + +TA+I GLA ++ PD +T+VGVL
Sbjct: 325 GNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVL 384
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 385 TACSHAG 391
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +S+ ++ + V A FA MP R V W AM+ Y+ A +F +M
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMP 206
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPT 123
T + IV YCKCG + A+ V +M K+ WTAMI G A S P +
Sbjct: 207 TRDSTSWSVLIVG------YCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKES 260
Query: 124 -----------IRPDEVTYVGVLSACTHNGN 143
I PD T VGV+SA + G+
Sbjct: 261 LALFREMEAAGIEPDAATMVGVISAASQIGS 291
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V + G VD A F ++ + D +TA+I G + AL +F MQ ++
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA--ISDP 120
PD T V +LTA + G V+K M+ R D + ++G A + +
Sbjct: 375 PDPITFVGVLTACSH--AGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEA 432
Query: 121 FPTIR-----PDEVTYVGVLSACTHNGN 143
F ++ P +LSAC +GN
Sbjct: 433 FEMVQTMPMGPHPGALGALLSACKTHGN 460
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ ++ GY G + AR+ F +MP ++ V WTAMI+GY + +E+L LF
Sbjct: 205 MPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALF 264
Query: 61 PEMQTSNIRPDEFTIV-------------------------------RILTAY--MYCKC 87
EM+ + I PD T+V ++LTA M+ KC
Sbjct: 265 REMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKC 324
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G+V++A R++ + D + +TA+I GLA ++ PD +T+VGVL
Sbjct: 325 GNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVL 384
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 385 TACSHAG 391
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +S+ ++ + V A F MP R V W AM+ Y+ A +F +M
Sbjct: 147 DAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMP 206
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPT 123
T + IV YCKCG + A+ V +M K+ WTAMI G A S P +
Sbjct: 207 TRDSTSWSVLIVG------YCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKES 260
Query: 124 -----------IRPDEVTYVGVLSACTHNGN 143
I PD T VGV+SA + G+
Sbjct: 261 LALFREMEAAGIEPDAATMVGVISAASQIGS 291
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V + G VD A F ++ + D +TA+I G + AL +F MQ ++
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA--ISDP 120
PD T V +LTA + G V+K M+ R D + ++G A + +
Sbjct: 375 PDPITFVGVLTACSH--AGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEA 432
Query: 121 FPTIR-----PDEVTYVGVLSACTHNGN 143
F ++ P +LSAC +GN
Sbjct: 433 FEMVQTMPMGPHPGALGALLSACKTHGN 460
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 86/186 (46%), Gaps = 49/186 (26%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V +WT +VS Y RG+V +AR+ F QM ERD V WTAMI GY F+EAL LF +++
Sbjct: 289 VAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEG 348
Query: 66 SNIRPDEFTIVRILTAY-----------------------------------MYCKCGDV 90
++PDE +V L+A MY KCG +
Sbjct: 349 LGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSI 408
Query: 91 EKAQRVLRKML--RKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
+ A V RK +K F + ++I GLA ++PD +T+V VLS
Sbjct: 409 DIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLS 468
Query: 137 ACTHNG 142
AC H G
Sbjct: 469 ACGHCG 474
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 76/220 (34%), Gaps = 80/220 (36%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV +++ Y G V A + F + RD V + MI+G+ R +F E
Sbjct: 150 GSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGCFRVFGE 209
Query: 63 MQTSNIRPDEFTIVRILTAY-----------------------------------MYCKC 87
M+ +RPDE+T V +L+ MY KC
Sbjct: 210 MRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKC 269
Query: 88 G---------------------------------DVEKAQRVLRKMLRKDKFTWTAMIVG 114
G +V+ A+R+ +M +D +WTAMI G
Sbjct: 270 GRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMISG 329
Query: 115 LAISDPFP------------TIRPDEVTYVGVLSACTHNG 142
+ + F ++PDEV V LSAC G
Sbjct: 330 YSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLG 369
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++K+ ++W ++ GY+ G+VD A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 124 VEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHEEALAWF 183
Query: 61 PEMQTSNIRPD------------------------EFTI-------VRILTAY--MYCKC 87
EMQ S ++PD F + VR+ + +YC+C
Sbjct: 184 REMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRC 243
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G VE A++V +M ++ +W ++IVG A + +PD VT+ G L
Sbjct: 244 GCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTFTGAL 303
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 304 TACSHVG 310
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F +M +R V W ++I G+ E+L F MQ +PD T
Sbjct: 240 YCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPDAVTF 299
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMI-VGLAISDP 120
LTA + G VE+ R M R D ++ + L + +
Sbjct: 300 TGALTACSH--VGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVES 357
Query: 121 FPTIRPDEVTYVGVLSACTHNGNET 145
P ++P+EV +L+AC +GN+T
Sbjct: 358 MP-MKPNEVVIGSLLAACRTHGNDT 381
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+SWT +++GY G V+ AR+ F +MPE++ V W+ MI GY + N F +A+ L+
Sbjct: 600 MSQLDVVSWTSMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKAIELY 659
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+Q+ ++ +E +V ++++ MY +C
Sbjct: 660 NVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDMYARC 719
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G ++KA +V ++ KD +WTA+I G A+ + P ++T+ VL
Sbjct: 720 GSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMIRTGLTPRDITFTAVL 779
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 780 SACSHRG 786
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++I T +V Y G +D A Q F ++ E+D + WTA+I G+ +AL F EM
Sbjct: 705 NLILGTALVDMYARCGSIDKAVQVFDELGEKDALSWTALIAGFAMHGHAEKALQYFSEMI 764
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+ + P + T +L+A + G VE+ ++ M R
Sbjct: 765 RTGLTPRDITFTAVLSACSH--RGLVERGMKIFETMKR 800
>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
Length = 558
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 58/195 (29%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ +W +V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ +++EAL LF E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
MQ +RP+EFT+ +L+A MY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAI----------------SDPFPTIRPD 127
KCG +E+A+RV + +KD ++AMI LA+ SD I P+
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD---NINPN 301
Query: 128 EVTYVGVLSACTHNG 142
VT+VG+L AC H G
Sbjct: 302 SVTFVGILGACVHRG 316
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+S+T +++ Y+ G +D+AR F ++ ++D VLW M+ Y++ EAL LF +M
Sbjct: 245 DVVSYTILINAYVEMGLIDLARDVFDEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMD 304
Query: 65 TSNIRPDEFTIVRILTA----------------------------------YMYCKCGDV 90
++ + PDE T+V +L A MY KCG V
Sbjct: 305 SAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNSNVRQDVFLKTALITMYSKCGSV 364
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
E+A KM D FTWTAMI GLA + IRP+E T V VL+AC
Sbjct: 365 EEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRMENQGIRPNESTLVSVLTAC 424
Query: 139 THNG 142
H+G
Sbjct: 425 IHSG 428
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 16/149 (10%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV T +++ Y G V+ A F +M D WTAMI+G EAL++F M
Sbjct: 346 QDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMFNRM 405
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI------ 117
+ IRP+E T+V +LTA ++ G V++ ++ + M+ K G I
Sbjct: 406 ENQGIRPNESTLVSVLTACIH--SGLVKEGCQLFKSMVSDYKMQLKMEHFGCLIDLLSRA 463
Query: 118 -----SDPF-PTIRPDE--VTYVGVLSAC 138
++ F + P+E + Y +LSAC
Sbjct: 464 GLLHQAEEFIQLLLPEERLIAYKTLLSAC 492
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ +V Y + G A F +MP+RD W +++ Y N F E + LF +
Sbjct: 108 DSDIYVQNALVHFYGSVGNSTDACFLFDRMPDRDVASWNSLMGIYNTNNSFTEVMVLFKK 167
Query: 63 MQTSNIRPDEFTIVRILTA 81
+ ++ D+ ++V +L+A
Sbjct: 168 LMCGCVKADKISLVIVLSA 186
>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 573
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 58/195 (29%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ +W +V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ +++EAL LF E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
MQ +RP+EFT+ +L+A MY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAI----------------SDPFPTIRPD 127
KCG +E+A+RV + +KD ++AMI LA+ SD I P+
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD---NINPN 301
Query: 128 EVTYVGVLSACTHNG 142
VT+VG+L AC H G
Sbjct: 302 SVTFVGILGACVHRG 316
>gi|357112521|ref|XP_003558057.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 656
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 85/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW +++GY+ G V A F+ MP +D V W+ +I G ++ N+ +ALT+F MQ
Sbjct: 331 DQYSWNSMIAGYLKNGHVKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQ 390
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
IRPDE TIV +++A MY KCG +E
Sbjct: 391 AQGIRPDEVTIVSVISACTNLSALEKGKSVHEYIKQNQYYVSLVLGTSLINMYMKCGCLE 450
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSAC 138
A M K W A+IVGLA++ D F T P+E+T+ GVLSAC
Sbjct: 451 AALEAFNIMEEKGTPCWNAVIVGLAMNGLVMKSLDMFSEMEASDTATPNEITFTGVLSAC 510
Query: 139 THNG 142
H G
Sbjct: 511 RHAG 514
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 85/243 (34%), Gaps = 107/243 (44%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++ Y++ G VD A + FAQMP+R
Sbjct: 168 DAVSWNTILAAYVHAGDVDQAVEVFAQMPKRNATAVSSMVSLFGRRGMVDEARRVFDAAE 227
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D WTAMI + R + F EAL +F M+ DE +V +++A
Sbjct: 228 CRDIFTWTAMISCFERNDMFAEALHVFSCMRRERWHVDEPLMVSVVSACAQSEVIQNGQM 287
Query: 82 ---------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
+MY C DV A+R+ D+++W +MI G
Sbjct: 288 CHGLVIRAGLCSQVNVQNALIHMYSSCLDVFAARRLFDSGECLDQYSWNSMIAGYLKNGH 347
Query: 115 ----LAISDPFPT---------------------------------IRPDEVTYVGVLSA 137
+A+ P IRPDEVT V V+SA
Sbjct: 348 VKDAMALFSAMPNKDNVSWSTVISGCVQNNQSSDALTVFDNMQAQGIRPDEVTIVSVISA 407
Query: 138 CTH 140
CT+
Sbjct: 408 CTN 410
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +W ++ GY G +++A F QMP +D + WT MI+GY R R+REA+ +F
Sbjct: 968 MPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVF 1027
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I PDE T+ +++A MY KC
Sbjct: 1028 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKC 1087
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E+A V + +K+ F W ++I GLA +++P+ VT+V V
Sbjct: 1088 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVF 1147
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 1148 TACTHAG 1154
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ AR+ F +MPERD V WT M+ Y +V A +L +M N
Sbjct: 915 TTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKN-- 972
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
E T ++ Y + G++E A+ + +M KD +WT MI G + + +
Sbjct: 973 --EATWNCLIDG--YTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFY 1028
Query: 122 ----PTIRPDEVTYVGVLSACTHNG 142
I PDEVT V+SAC H G
Sbjct: 1029 KMMEEGIIPDEVTMSTVISACAHLG 1053
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 1073 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 1132
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+++P+ T V + TA + G VE+ +R+ R M+
Sbjct: 1133 MESVKPNTVTFVSVFTACTH--AGLVEEGRRIYRSMI 1167
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 52/194 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W +++GY+ RG +D AR+ F +MPER+ V WT MI GY + + ++AL LF
Sbjct: 193 MSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLF 252
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------------------------------YM 83
+M+ + + D+ ++ LTA +M
Sbjct: 253 DQMRKAGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHM 312
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-------AISDPFPTI--------RPDE 128
Y CG +++A V R M + +WT++I A+ + F ++ RPD
Sbjct: 313 YASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDG 372
Query: 129 VTYVGVLSACTHNG 142
+T++GVL AC+H G
Sbjct: 373 ITFIGVLCACSHAG 386
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ---TSNI 68
++ Y + G +D A + F MPER V WT++I + + + L +F MQ TS
Sbjct: 309 LIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEA 368
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
RPD T + +L A + G V++ +++ + M+++
Sbjct: 369 RPDGITFIGVLCACSH--AGLVDEGRQLFKDMIQR 401
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++ T ++S Y ++G V+ A F+++ +D V WTAMIDG++R AL F M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGM 269
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
Q N+RP+EFTIV +L+A MY +CG +
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
++AQ V +M +D T+ MI GL+++ +RP VT+VGVL+AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNAC 389
Query: 139 THNG 142
+H G
Sbjct: 390 SHGG 393
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 70/196 (35%), Gaps = 75/196 (38%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+D A + F + L+TA+IDG++ + +A+ L+ M +I PD + + IL A
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156
Query: 82 ---------------------------------YMYCKCGDVEKAQRVLRKM-------- 100
+Y KCG++ A+RV +M
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 101 ----------------------LRKDKFTWTAMIVGLAISDPF------------PTIRP 126
RKD WTAMI G ++ +RP
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRP 276
Query: 127 DEVTYVGVLSACTHNG 142
+E T V VLSAC+ G
Sbjct: 277 NEFTIVCVLSACSQLG 292
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++K+ ++W ++ GY+ GQVD A F +MP+RD + WTAMI G+++ EAL F
Sbjct: 120 IEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWF 179
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + PD I+ + A +YC+C
Sbjct: 180 REMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRC 239
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A++V KM ++ +W ++IVG A + PD VT+ G L
Sbjct: 240 GCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGAL 299
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 300 TACSHVG 306
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F +M +R V W ++I G+ E+L F +MQ PD T
Sbjct: 236 YCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTF 295
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKD-----KFTWTAMIVGL-----AISDPFPTI- 124
LTA + G VE+ + +M++ D + +V L + D F +
Sbjct: 296 TGALTACSH--VGLVEEGFQYF-QMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVE 352
Query: 125 ----RPDEVTYVGVLSACTHNGNETFV 147
+P+EV +L+AC ++GN T +
Sbjct: 353 SMPMKPNEVVIGSLLAACRNHGNHTIL 379
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 102 bits (253), Expect = 6e-20, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +++GY+ G + AR+ F MPER+ V WT +I GY ++ R EA+ +F
Sbjct: 140 MAVRDVVAWNVMIAGYVKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVF 199
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ I PD ++ +L+A MY KC
Sbjct: 200 RRMQVEGIEPDGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKC 259
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G +EKA V M K TWT +I G A+ + F + P++VT++ +L
Sbjct: 260 GCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAIL 319
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 320 SACSHVG 326
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+ ++W ++ GY+ GQV A + F +MPE D + WTAM++G+++ EAL F
Sbjct: 110 MDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWF 169
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 170 REMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRC 229
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ V KM ++ +W ++IVG A + +P+ VT+ G L
Sbjct: 230 GCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGAL 289
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 290 TACSHVG 296
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ AR+ F +M +R V W ++I G+ E+L F +MQ +P+ T
Sbjct: 226 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTF 285
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV-GLAISDP 120
LTA + G V++ R + M R D ++ + L +
Sbjct: 286 TGALTACSH--VGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQS 343
Query: 121 FPTIRPDEVTYVGVLSACTHNGNETFV 147
P ++P+EV +L+AC ++GN T +
Sbjct: 344 MP-MKPNEVVIGSLLAACRNHGNNTVL 369
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y GQV+ AR+ F MP+R+ V WT+MI GY ++ + +EA+ LF +MQ + ++
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 70 PDEFTIVRILT---------------AY------------------MYCKCGDVEKAQRV 96
D+ TI +++ AY MY KCGD++KA +
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPT------IRPDEVTYVGVLSACTHNG 142
M+++D F+WT +I+G A + D F + P+E+T++GVL++C+H G
Sbjct: 355 FCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGG 413
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMI----DGYLRVNRFR 54
D +SW I++GYI+ G + A Q F+QM + D L A++ ++V +
Sbjct: 159 SDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLC 218
Query: 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
AL + T+ + + +++ MY KCG VE A+R+ M ++ WT+MI G
Sbjct: 219 HAL-----LVTNGFEINCYMGSSLIS--MYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KD+ ++ Y G + A F M +RD WT +I G+ EAL LF +
Sbjct: 329 GKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFAANGLSGEALDLFAQ 388
Query: 63 M-QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVG 114
M + + P+E T + +LT+ + G VE+ R +M R + + ++G
Sbjct: 389 MEEEGGVMPNEITFLGVLTSCSH--GGLVEQGYRHFHRMSSIYGIAPRIEHYGCMVDLLG 446
Query: 115 ----LAISDPFPT---IRPDEVTYVGVLSACTHNGN 143
LA ++ F I PD V + +L AC G
Sbjct: 447 RAKLLAEAEQFIKEMPIAPDAVMWRSLLFACRTCGE 482
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ +++ + G+V AR F +MPER+ V W+AM++GY++ REAL +F +MQ
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQ 217
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPD+ +V +L A MY KCG+V+
Sbjct: 218 AQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQ 277
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSACT 139
V M K+ WT MI GLA+ SD ++PD++ ++G L ACT
Sbjct: 278 LGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACT 337
Query: 140 HNG 142
H G
Sbjct: 338 HTG 340
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V + + F M +++ + WT MI G R ++LTLF +M++S ++
Sbjct: 264 TALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVK 323
Query: 70 PDEFTIVRILTAYMYCKC---GDVEKAQRVLRKML 101
PD+ + L C C G V+K + + M+
Sbjct: 324 PDDIAFIGAL-----CACTHTGLVDKGRELFNSMV 353
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY G +++AR F +MP ++ V WT +I G+ +EA TL+
Sbjct: 246 MPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLY 305
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + ++PD+ T++ IL A MY KC
Sbjct: 306 NQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKC 365
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G V+KA + +M +D +W M+ GLA+ +PD+VT + +L
Sbjct: 366 GRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAIL 425
Query: 136 SACTHNG 142
ACTH G
Sbjct: 426 CACTHAG 432
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW ++ G + G + AR+ F +M ERD V W ++DGY++ +A LF
Sbjct: 184 MGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---I 117
+M P+ + YCK GD+E A+ + KM K+ TWT +I G A +
Sbjct: 244 EKM------PERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGL 297
Query: 118 SDPFPT---------IRPDEVTYVGVLSACTHNG 142
+ T ++PD+ T + +L+AC +G
Sbjct: 298 AKEATTLYNQMEAAGLKPDDGTLISILAACAESG 331
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT+++ Y G ++ A F +P +D V WTAM+ GY + R +EAL F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYF 263
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
+MQ + DE T+ +++A MY
Sbjct: 264 QKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYS 323
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-----------SDPFPT-IRPDEVTYVG 133
KCG ++A +V M ++ F++++MI+G A+ D T IRP++VT++G
Sbjct: 324 KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIG 383
Query: 134 VLSACTHNG 142
+LSAC+H G
Sbjct: 384 ILSACSHAG 392
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ +V+ + ++ Y G D A + F M ER+ +++MI GY R AL LF +
Sbjct: 309 SGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHD 368
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGL 115
M + IRP++ T + IL+A + G VE+ +++ KM + D + ++G
Sbjct: 369 MLKTEIRPNKVTFIGILSACSH--AGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGR 426
Query: 116 A--ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
A + + ++ P+ + +L AC +GN
Sbjct: 427 AGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461
>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
Length = 615
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV---------- 50
M KD+ISW ++ GY+ G+++ A+ F +MP RD V W M+DGY ++
Sbjct: 249 MPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLF 308
Query: 51 --------------------NRFR-EALTLFPEMQT-SNIRPDEFTIVRILTAY------ 82
NR+ EA+ +F +M+ S++ PDE T+V +L+A
Sbjct: 309 DQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRL 368
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG +++A V ++ K W AMI GL
Sbjct: 369 SKAMDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGL 428
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
AI F +I+PD++T+VGVL+AC+H+G
Sbjct: 429 AIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSG 467
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 20/155 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW +++GY R VDIA F +MPE+D + W ++IDGY++ R +A LF
Sbjct: 218 EKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLF 277
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
+M R D T ++ Y K G V +A+ + +M ++D + +M+ G
Sbjct: 278 DKMP----RRDVVTWATMVDG--YAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRY 331
Query: 115 -LAISDPF------PTIRPDEVTYVGVLSACTHNG 142
+ D F + PDE T V VLSA G
Sbjct: 332 HMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLG 366
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL-RVNRFREAL 57
M +D +S+ ++ GY+ G ++ AR+ F MP +++ + W +MI+GY R + A
Sbjct: 184 MSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIAS 243
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF EM P++ I Y K G +E A+ + KM R+D TW M+ G A
Sbjct: 244 NLFDEM------PEKDLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYA 296
Score = 36.2 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 18/145 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A F ++ + W AMI G A + +++ +I+PD
Sbjct: 393 LIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPD 452
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAIS-------- 118
+ T V +L A + G V++ M RK K + M+ L+ S
Sbjct: 453 DITFVGVLNACSHS--GLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKN 510
Query: 119 --DPFPTIRPDEVTYVGVLSACTHN 141
+ P I P++V + L+AC+H+
Sbjct: 511 LIEEMP-IEPNDVIWRTFLTACSHH 534
>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
Length = 584
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV++W ++ GY G V A++ F +MP+RD V + +M+ GY++ EA+ +F
Sbjct: 250 MPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIF 309
Query: 61 PEMQT-SNIRPDEFTIVRILTAYM---------------------------------YCK 86
+M+ S++ PDE T+V +L+A Y K
Sbjct: 310 NDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSK 369
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CG ++K+ RV ++ K W AMI GLAI F +I+PD++T++GV
Sbjct: 370 CGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGV 429
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 430 LNACSHSG 437
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 2 KNKDVISWTDIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW ++SGY + V++A + F +MPE+D + W ++IDGY++ R +A +LF
Sbjct: 188 EKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLF 247
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----- 115
M R D T ++ Y K G V +A+++ +M ++D + +M+ G
Sbjct: 248 DLMP----RKDVVTWATMIDG--YAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKY 301
Query: 116 ---AIS-----DPFPTIRPDEVTYVGVLSACTHNG 142
AI + + PDE T V VLSA G
Sbjct: 302 HAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLG 336
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G + ARQ F +MP+RD V + +MIDGY++ A LF M + +
Sbjct: 134 LIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPRE--KKN 191
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ +++ Y + G V A ++ +M KD +W ++I G
Sbjct: 192 LISWNCMISGYTQSEDG-VNVASKLFDEMPEKDLISWNSLIDG 233
>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 532
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +SW +++ Y RG++ AR F ++PERD V W AMI G++R A+ LF +M
Sbjct: 207 KDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQM 266
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 267 QRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCG 326
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLS 136
++ A +V M KD TW ++I GLA+ D F +RPDE+T+V VL
Sbjct: 327 SMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLI 386
Query: 137 ACTHNG 142
AC+H G
Sbjct: 387 ACSHGG 392
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 37/135 (27%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFT 74
RG + A F Q+P D ++ +I G R+A++L+ M +RPD+ T
Sbjct: 55 RGAIAHAYLVFDQIPRPDLFMYNTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKIT 114
Query: 75 ---IVRILTAY------------------------------MYCKCGDVEKAQRVLRKML 101
++R TA M+ CG++ A +
Sbjct: 115 FPFVLRACTAMGAGGTGAQVHAHVVKAGCESDAFVRNALIGMHASCGELGVASALFDGRA 174
Query: 102 RKDKFTWTAMIVGLA 116
R+D W+AMI G A
Sbjct: 175 REDAVAWSAMITGCA 189
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V+ Y +++ A F+QM E++ V WTA+I G+ + R EAL LF
Sbjct: 209 MPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLF 268
Query: 61 PEMQTSNIRPDEFTIVRILTAY------------------------------------MY 84
+M+ I P FT +L+A MY
Sbjct: 269 EQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMY 328
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYV 132
CKCG + A + + M KD +W ++I G LA+ + IRP+ VT++
Sbjct: 329 CKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFL 388
Query: 133 GVLSACTHNG 142
G+LSAC H G
Sbjct: 389 GLLSACCHTG 398
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y GQ+ A F M E+D V W ++I G+ + E+L +F M ++IRP+
Sbjct: 324 LIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPN 383
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +L+A C G V + R+L M
Sbjct: 384 HVTFLGLLSA--CCHTGLVSEGLRILDSM 410
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 35/148 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ SW I+S Y G + A QMP+ + V + ++I G +E+L +F M
Sbjct: 78 KNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKTM 137
Query: 64 --QTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
Q SN+ DEFT+V ++ + Y KCG
Sbjct: 138 LKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCG 197
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ + + + +M +D +WT+M+ A
Sbjct: 198 EPDISFSIFSRMPERDVVSWTSMVAAYA 225
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ +++ Y G+V AR F +MP R+ V W+AM++GY++ REAL LF MQ
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPD+ +V +L A MY KCG+++
Sbjct: 336 ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSACT 139
A V + M K+ WT MI GLA+ S+ ++PD++ ++G L ACT
Sbjct: 396 LAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACT 455
Query: 140 HNG 142
H G
Sbjct: 456 HTG 458
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +A + F M E++ + WT MI G R EAL LF +M+ ++
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
Query: 70 PDEFTIVRILTAYMYCKC---GDVEKAQRVLRKMLRK 103
PD+ + L C C G V+K + + M+RK
Sbjct: 442 PDDIAFIGAL-----CACTHTGLVDKGRELFDSMVRK 473
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ +++ Y G+V AR F +MP R+ V W+AM++GY++ REAL LF MQ
Sbjct: 276 DASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQ 335
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPD+ +V +L A MY KCG+++
Sbjct: 336 ADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQ 395
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSACT 139
A V + M K+ WT MI GLA+ S+ ++PD++ ++G L ACT
Sbjct: 396 LAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACT 455
Query: 140 HNG 142
H G
Sbjct: 456 HTG 458
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +A + F M E++ + WT MI G R EAL LF +M+ ++
Sbjct: 382 TALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVK 441
Query: 70 PDEFTIVRILTAYMYCKC---GDVEKAQRVLRKMLRK 103
PD+ + L C C G V+K + + M+RK
Sbjct: 442 PDDIAFIGAL-----CACTHTGLVDKGRELFDSMVRK 473
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+SWT ++ G V+ AR +F MPER+ V W AMI Y++ + EAL L+
Sbjct: 274 MPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLY 333
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ+ + PDE T+V +L+A MY KC
Sbjct: 334 NQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKC 393
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
G V+ A + +M ++ +W +I GLA ++D F PD +T+V
Sbjct: 394 GQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFA---PDGITFV 450
Query: 133 GVLSACTHNG 142
+LSAC+H G
Sbjct: 451 ALLSACSHGG 460
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 33/134 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y + G + +R++F +M +R+ V W +MI GY + RE +LF EM+ D
Sbjct: 153 LLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLED 212
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT+V +L A MY KCGD+ A+R
Sbjct: 213 EFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFE 272
Query: 99 KMLRKDKFTWTAMI 112
M K +WT+M+
Sbjct: 273 MMPIKSVVSWTSML 286
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 20/157 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV ++ Y GQVD A F++M R+ V W +I G R + +T F
Sbjct: 377 NPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRS 436
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLR----KDKFTWTAMIVGL-- 115
M T + PD T V +L+A C G +E Q M K + A +V L
Sbjct: 437 MVTDSFAPDGITFVALLSA---CSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLG 493
Query: 116 ---------AISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P ++PD V + +L AC +GN
Sbjct: 494 RRGHLEKAVCLIKEMP-MKPDVVVWGALLGACRIHGN 529
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+W +++ + G + A + FA+MPER+ WT+MI GY + + +EA+ LF
Sbjct: 174 MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF 233
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + + P+E T+V +L A MY KC
Sbjct: 234 LEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFP--------TIRPDEVTYVGVL 135
G +E A R+ M + +W+AMI GLA D ++P+ VT++G+L
Sbjct: 294 GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353
Query: 136 SACTHNG 142
AC+H G
Sbjct: 354 HACSHMG 360
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K++ ++ Y+ G ++ A + F M ER V W+AMI G R +AL LF +M
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+ ++P+ T + IL A + G VEK ++ M R
Sbjct: 338 INTGVKPNAVTFIGILHACSH--MGMVEKGRKYFASMTR 374
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 45/194 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW+ ++ GY++ G+++ A+Q F MPE++ V WT +I+G+ + + A++ +
Sbjct: 222 MPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM ++P+E+T+ +L+A MY KC
Sbjct: 282 FEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKC 341
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVL 135
G+V+ A V M KD +WTAMI G A+ F +PDEV ++ VL
Sbjct: 342 GEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401
Query: 136 SACTHNGNETFVIN 149
+AC ++G +N
Sbjct: 402 TACLNSGEVDLGLN 415
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+V Y GQ++ A Q F + P+R +LW +++GY R + A TLF M N
Sbjct: 167 LVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERN 226
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT---- 123
T+++ Y G++ +A+++ M K+ +WT +I G + + + T
Sbjct: 227 -SGSWSTLIK-----GYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAIST 280
Query: 124 --------IRPDEVTYVGVLSACTHNG 142
++P+E T VLSAC+ +G
Sbjct: 281 YFEMLEKGLKPNEYTVAAVLSACSKSG 307
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 60/186 (32%), Positives = 83/186 (44%), Gaps = 47/186 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W+ + Y G ++ AR F +M RD V WTAMID Y R E LF E
Sbjct: 245 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAE 304
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ S I+P++FT +L A +MY KCG+
Sbjct: 305 LLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYSKCGN 364
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLS 136
+ A+RV R M + D +WT++I G A + P RPD +T+VGVLS
Sbjct: 365 MVNAERVFRGMPQPDLVSWTSLIAGYA-QNGHPDEALQYFELLLKSGTRPDHITFVGVLS 423
Query: 137 ACTHNG 142
AC H G
Sbjct: 424 ACAHAG 429
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 88/190 (46%), Gaps = 46/190 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++SG G + AR+ F MPERD WTAMI GY+R NR EAL L+
Sbjct: 141 MGERDLCSWNVLISGCAKMGLLKEARKLFDTMPERDNFSWTAMISGYVRHNRPHEALELY 200
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M+ N+ ++FT+ +L A MY K
Sbjct: 201 RLMKKCENLTSNKFTVSSVLAAAAAIPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 260
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPF--PTIRPDEVTYVGV 134
CG +E+A+ + KM+ +D TWTAMI G + I+P++ T+ GV
Sbjct: 261 CGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFELFAELLRSGIKPNDFTFAGV 320
Query: 135 LSACTHNGNE 144
L+AC G E
Sbjct: 321 LNACADLGVE 330
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + A + F MP+ D V WT++I GY + EAL F + S RPD
Sbjct: 355 LVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFELLLKSGTRPD 414
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
T V +L+A + G V+K + ++ DK T
Sbjct: 415 HITFVGVLSACAH--AGLVDKGLQYFHSIM--DKLT 446
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++V T ++ Y+ G ++ A F+ MPE+D V W+ MI GY ++AL LF +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ+ N++PD +T+V +L+A MY KCG
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
V +A + M RKD+ W AM+VGL+++ IRPDE T++G+L
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426
Query: 138 CTHNG 142
CTH G
Sbjct: 427 CTHGG 431
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV T ++S Y+ D A + F +P+++ V WTA+I GY+ FREA+ F +
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ ++PD F++V++L A MY KCG+
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSA 137
+E+A + M KD +W+ MI G A + D F ++PD T VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Query: 138 CTHNG 142
C G
Sbjct: 326 CATLG 330
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 45/179 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ ++ G + ++ F+Q+ E + LW MI G + + F +A+ L+ M+ P+
Sbjct: 54 ILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPN 113
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
FTI +L A +Y KC + + A +V
Sbjct: 114 NFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFD 173
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNGNET 145
+ K+ +WTA+I G S F ++PD + V VL+AC G+ T
Sbjct: 174 DIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+W +++ + G + A + FA+MPER+ WT+MI GY + + +EA+ LF
Sbjct: 174 MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLF 233
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + + P+E T+V +L A MY KC
Sbjct: 234 LEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKC 293
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFP--------TIRPDEVTYVGVL 135
G +E A R+ M + +W+AMI GLA D ++P+ VT++G+L
Sbjct: 294 GCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGIL 353
Query: 136 SACTHNG 142
AC+H G
Sbjct: 354 HACSHMG 360
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K++ ++ Y+ G ++ A + F M ER V W+AMI G R +AL LF +M
Sbjct: 278 KNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKM 337
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+ ++P+ T + IL A + G VEK ++ M R
Sbjct: 338 INTGVKPNAVTFIGILHACSH--MGMVEKGRKYFASMTR 374
>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
Length = 703
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D + W+ + Y G+VD AR+ F +MP RD V WTAM++ Y R E LF M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+T +RP+EFT +L A MY KCGD+
Sbjct: 261 RTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPF--PTIRPDEVTYVGVLSAC 138
A RV M + D +WTA+I G A + D F I+PD VT+VGVLSAC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380
Query: 139 THNG 142
H G
Sbjct: 381 AHAG 384
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 52/174 (29%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT---SNIRPDEFT------- 74
AR+ F +MP+RD+ W+A++ GY R + AL L+ MQ ++ +EFT
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173
Query: 75 ----------------IVR----------IL---TAYMYCKCGDVEKAQRVLRKMLRKDK 105
+VR +L A MY KCG V+ A+RV +M +D
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233
Query: 106 FTWTAMIV----GLAISDPFPT---------IRPDEVTYVGVLSACTHNGNETF 146
+WTAM+ G + F +RP+E TY GVL AC E+F
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESF 287
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 35/137 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + A + F M + D V WTA+I GY + + EAL F S I+PD T
Sbjct: 314 YSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTF 373
Query: 76 VRILTA------------------YMYC----------------KCGDVEKAQRVLRKM- 100
V +L+A YC + G E+A++++ M
Sbjct: 374 VGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMA 433
Query: 101 LRKDKFTWTAMIVGLAI 117
++ +KF W +++ G I
Sbjct: 434 VKPNKFLWASLLGGCRI 450
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 65/184 (35%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D + W+ + Y G+VD AR+ F +MP RD V WTAM++ Y R E LF M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+T +RP+EFT +L A MY KCGD+
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPF--PTIRPDEVTYVGVLSAC 138
A RV M + D +WTA+I G A + D F I+PD VT+VGVLSAC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380
Query: 139 THNG 142
H G
Sbjct: 381 AHAG 384
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 52/174 (29%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT---SNIRPDEFT------- 74
AR+ F +MP+RD+ W+A++ GY R + AL L+ MQ ++ +EFT
Sbjct: 114 ARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAA 173
Query: 75 ----------------IVR----------IL---TAYMYCKCGDVEKAQRVLRKMLRKDK 105
+VR +L A MY KCG V+ A+RV +M +D
Sbjct: 174 AAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDA 233
Query: 106 FTWTAMIV----GLAISDPFPT---------IRPDEVTYVGVLSACTHNGNETF 146
+WTAM+ G + F +RP+E TY GVL AC E+F
Sbjct: 234 VSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESF 287
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 35/137 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + A + F M + D V WTA+I GY + + EAL F S I+PD T
Sbjct: 314 YSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTF 373
Query: 76 VRILTA------------------YMYC----------------KCGDVEKAQRVLRKM- 100
V +L+A YC + G E+A++++ M
Sbjct: 374 VGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMA 433
Query: 101 LRKDKFTWTAMIVGLAI 117
++ +KF W +++ G I
Sbjct: 434 VKPNKFLWASLLGGCRI 450
>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
Length = 617
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 48/189 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTL 59
M +DV++W+ ++ GY G V A+ F QMP RD V + +MI GY++ NR+ EAL +
Sbjct: 282 MPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQ-NRYNMEALEI 340
Query: 60 FPEMQT-SNIRPDEFTIVRILTAY---------------------------------MYC 85
F +M+ S++ PDE T+V +L+A MY
Sbjct: 341 FSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYS 400
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVG 133
KCG ++ A V + + K W AMI GLAI F +I+PD++T+VG
Sbjct: 401 KCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVG 460
Query: 134 VLSACTHNG 142
+L+AC+H+G
Sbjct: 461 LLNACSHSG 469
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY VDIA + F++MP++D + W +MIDGY++ R +A LF
Sbjct: 222 KNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDV 281
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V +A+ + +M +D ++ +MI G
Sbjct: 282 MP----RRDVVTWSTMIDG--YAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNM 335
Query: 115 -----LAISDPFPTIRPDEVTYVGVLSACTHNG 142
+ + + PDE T V VLSA G
Sbjct: 336 EALEIFSDMEKESHLSPDETTLVIVLSAIAQLG 368
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFRE-AL 57
M +D +S+ ++ GY+ G + AR+ F MPE ++ + W +MI GY + + + A
Sbjct: 186 MPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIAS 245
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF EM PD+ I Y K G +E A+ + M R+D TW+ MI G A
Sbjct: 246 KLFSEM------PDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYA 298
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++ T ++S Y ++G V+ A F+++ +D V WTAMIDG++R AL F M
Sbjct: 210 EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGM 269
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
Q N+RP+EFTIV +L+A MY +CG +
Sbjct: 270 QGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSI 329
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
++AQ V +M +D T+ MI GL+++ +RP VT+VGVL+AC
Sbjct: 330 DEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNAC 389
Query: 139 THNG 142
+H G
Sbjct: 390 SHGG 393
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 75/196 (38%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+D A + F + L+TA+IDG++ + EA+ L+ M +I PD + + IL A
Sbjct: 97 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 156
Query: 82 ---------------------------------YMYCKCGDVEKAQRVLRKM-------- 100
+Y KCG++ A+RV +M
Sbjct: 157 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAST 216
Query: 101 ----------------------LRKDKFTWTAMIVGLAISDPF------------PTIRP 126
RKD WTAMI G ++ +RP
Sbjct: 217 VMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRP 276
Query: 127 DEVTYVGVLSACTHNG 142
+E T V VLSAC+ G
Sbjct: 277 NEFTIVCVLSACSQLG 292
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y ++ AR+ F +MP R+ V WTAMI G+ RV EA+ LF EMQ + I+
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T+V +++A MY KCG +E+A++V
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACTHNG 142
M KD W++MI+G A D F + PD VT++ VLSAC H G
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGG 308
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 47/170 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEM-QTSNIRPDEFTIVR 77
G ++ AR FAQ+P + W ++I GY +++ +E + LF ++ +T P+ FT+
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 78 IL------TAY---------------------------MYCKCGDVEKAQRVLRKMLRKD 104
+L TA+ Y KC ++ A++V +M ++
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 105 KFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
WTAMI G A I+PD +T V V+SAC G
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAG 207
>gi|218191827|gb|EEC74254.1| hypothetical protein OsI_09463 [Oryza sativa Indica Group]
Length = 788
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/184 (34%), Positives = 91/184 (49%), Gaps = 52/184 (28%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT +VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 315 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 374
Query: 69 RPDEFTIVRILTAY----------------------------------MYCKCGDVEKAQ 94
DE TIV +L+A MY K G ++ AQ
Sbjct: 375 EADEATIVTVLSACVGYGSIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 434
Query: 95 RVLRKMLRKDKFT----WTAMIVGL----------AISDPFPT--IRPDEVTYVGVLSAC 138
V + D F + AMI GL A+ D + +RPD++T+VGVLSAC
Sbjct: 435 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDGMGSLGLRPDKITFVGVLSAC 492
Query: 139 THNG 142
H+G
Sbjct: 493 RHSG 496
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y + G +AR F +MP RD V + +I Y++ +A +F M
Sbjct: 174 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVQSCCINDAFEVFRIMV 233
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGD------VEKAQRVLRKMLRKDKF 106
S +RPD +T+ +L A C + V+ V R+ML F
Sbjct: 234 ESGLRPDGWTVTALLGA-----CAELQDLRAVKAVHGVARRMLEPQVF 276
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
N++ T V Y G + A++ F+ + + + L+ AMI+G R +A+ LF
Sbjct: 411 NRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIALF 470
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
M + +RPD+ T V +L+A
Sbjct: 471 DGMGSLGLRPDKITFVGVLSA 491
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S T +VS Y +V+IAR F MPE+D V W+AMI GY+ N+ EAL+LF
Sbjct: 71 MPRKDLVSSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLF 130
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ IR DE T++ +++A M+ KC
Sbjct: 131 NGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLHICNALIDMFAKC 190
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVGVL 135
G + A V +M K+ TWT+MI A+ D ++R P+EVT++ +L
Sbjct: 191 GGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 250
Query: 136 SACTHNG 142
AC H G
Sbjct: 251 YACCHVG 257
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +++A F +MP ++ + WT+MI + + +L LF +M+ P+E T + +L
Sbjct: 191 GGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEVTFLSLL 250
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK 103
Y C G V + + + M+++
Sbjct: 251 --YACCHVGLVYEGRLLFSSMVQQ 272
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 51/147 (34%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y + +++A + + +MP +D V TAM+ Y R NR
Sbjct: 49 SALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSRYAR-NR----------------- 90
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------ 123
VE A+ + M KD +W+AMI G S+ P
Sbjct: 91 -------------------KVEIARSIFDGMPEKDVVSWSAMISGYVDSNQ-PNEALSLF 130
Query: 124 -------IRPDEVTYVGVLSACTHNGN 143
IR DEVT + V+SAC + G+
Sbjct: 131 NGMQECGIRSDEVTMLSVISACANLGS 157
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KD ++W +++G + ++D AR+ F + E+D V W AMI GY+ +EAL++F
Sbjct: 204 MPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIF 263
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
EM+ + PD TI+ +L+A
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR-----------PDEVTY 131
MY KCG +++A V R M +D TW +IVGLA+ ++ P+EVT+
Sbjct: 324 MYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALHHAEGSVEMFEEMQRLKVWPNEVTF 383
Query: 132 VGVLSACTHNG 142
+GV+ AC+H+G
Sbjct: 384 IGVILACSHSG 394
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ N G + IA + F + V W++M GY + + EA+ LF EM PD+ +
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM------PDKDQV 210
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL--------AISDPFPTIR-- 125
+ KC +++ A+ + + KD TW AMI G A+S F +R
Sbjct: 211 AWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALS-IFKEMRDA 269
Query: 126 ---PDEVTYVGVLSACTHNGN 143
PD VT + +LSAC G+
Sbjct: 270 GEHPDVVTILSLLSACAVLGD 290
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 90/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++ YI G+++ A+ F +MPERD V W +MI GY+++ + AL LF
Sbjct: 317 MPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYARALALF 376
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ +N+ + T++ +L A MY KC
Sbjct: 377 REMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKC 436
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTI-------RPDEVTYVG 133
G + A V ++ K W AMIV LA+ F T+ RP+ VT++G
Sbjct: 437 GHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIG 496
Query: 134 VLSACTHNG 142
VL AC+H G
Sbjct: 497 VLIACSHKG 505
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D +V Y G +D+AR F +M E+ W MI Y ++N F A +L
Sbjct: 257 DQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEKTITSWNVMISAYDQINDFDSADSLIGS 316
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISD-- 119
M N+ I R Y + G +E A+ V ++M +D +W +MI G + I D
Sbjct: 317 MPGKNVVSWNMLIAR------YIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQIKDYA 370
Query: 120 ---------PFPTIRPDEVTYVGVLSACTHNG 142
+ ++T + VL AC G
Sbjct: 371 RALALFREMEIANVEATDITLISVLGACAETG 402
>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
gi|223947871|gb|ACN28019.1| unknown [Zea mays]
gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
Length = 651
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW ++SGY+ G+V+ A+ F MP++D V W+AMI G + N+ EAL +F M+
Sbjct: 334 DHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWSAMIAGCVHNNQSSEALNVFDSMR 393
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I+PD+ T+V +++A MY KCG +E
Sbjct: 394 AHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKYQYNITIVLGTSLIDMYMKCGCME 453
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSAC 138
A V + K W A+IVGLA++ D F T P+E+T+ GVLSAC
Sbjct: 454 AALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMEATGTAVPNEITFTGVLSAC 513
Query: 139 THNG 142
H G
Sbjct: 514 RHGG 517
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/219 (23%), Positives = 80/219 (36%), Gaps = 76/219 (34%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----------------------------- 35
D +SW I++ Y+ G V+ A + F +MPER
Sbjct: 171 DAVSWNTILATYVRDGDVEQAVKVFTRMPERSAAAVSAMVALFARRGMVEEARGVFDGAE 230
Query: 36 --DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------------ 81
D WTAM+ + R + F EAL +F +M+ DE +V ++ A
Sbjct: 231 HRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEV 290
Query: 82 ---------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----- 115
+MY C DV A+R+ D F+W +MI G
Sbjct: 291 CHGLVVRAGLGSRVNVQNVLIHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGR 350
Query: 116 -----AISDPFPTIRPDEVTYVGVLSACTHNGNETFVIN 149
A+ D P D V++ +++ C HN + +N
Sbjct: 351 VEDAKALFDVMPD--KDNVSWSAMIAGCVHNNQSSEALN 387
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V AR+ F P D V W ++ Y+R +A+ +F M P+
Sbjct: 155 GCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVFTRM------PERSAAAVSA 208
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTIRP-----D 127
++ + G VE+A+ V +D FTWTAM+ +D F +R D
Sbjct: 209 MVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALAVFSDMREEGWPVD 268
Query: 128 EVTYVGVLSACTHNG 142
E V V++AC +G
Sbjct: 269 EAVMVSVVAACAKSG 283
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 66/186 (35%), Positives = 86/186 (46%), Gaps = 49/186 (26%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V +WT +VS Y RG+V++AR+ F QM ERD V WTAMI GY F+EAL LF E++
Sbjct: 250 VAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELED 309
Query: 66 SNIRPDEFTIVRILTAY-----------------------------------MYCKCGDV 90
+ PDE +V L+A MY KCG +
Sbjct: 310 LGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSI 369
Query: 91 EKAQRVLRKML--RKDKFTWTAMIVGLA-------ISDPFPTIR-----PDEVTYVGVLS 136
E A V K K F + +++ GLA F +R PDEVTYV +L
Sbjct: 370 EAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLC 429
Query: 137 ACTHNG 142
AC H+G
Sbjct: 430 ACGHSG 435
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/206 (24%), Positives = 73/206 (35%), Gaps = 79/206 (38%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G A + F + P RD V + +I+G +R R ++ +F EM+ + PDE+T
Sbjct: 125 YFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTF 184
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLR-- 98
V +L+A MY KCG +E A+RV+R
Sbjct: 185 VALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNG 244
Query: 99 ------------------------------KMLRKDKFTWTAMIVGLAISDPFPT----- 123
+M +D +WTAMI G + F
Sbjct: 245 NGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELF 304
Query: 124 -------IRPDEVTYVGVLSACTHNG 142
+ PDEV V LSAC G
Sbjct: 305 VELEDLGMEPDEVVVVAALSACARLG 330
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+V Y G ++ A F + + + L+ +++ G R A+ LF EM+ +
Sbjct: 359 VVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLE 418
Query: 70 PDEFTIVRILTAYMYCKCGD---VEKAQRVLRKML 101
PDE T V +L C CG V+ +R+ ML
Sbjct: 419 PDEVTYVALL-----CACGHSGLVDHGKRLFESML 448
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW +++ Y G+++ AR+ F ++P++D V W AMI GY+ +EAL +F
Sbjct: 205 MPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M+ RPD+ T++ IL+A MY K
Sbjct: 265 DAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAK 324
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
CG + A V + M +KD +W ++I GLA+ ++P+E+T+V V
Sbjct: 325 CGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAV 384
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 385 LVACSHAG 392
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 49/152 (32%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V+ W+ + +GY RG++D+ARQ F +MP +D V W MI Y
Sbjct: 177 REVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAY---------------- 220
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----- 118
K G++EKA+++ ++ +KD TW AMI G +S
Sbjct: 221 ---------------------AKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLNKE 259
Query: 119 --DPFPTI-----RPDEVTYVGVLSACTHNGN 143
+ F + RPD+VT + +LSA G+
Sbjct: 260 ALEMFDAMRDLGQRPDDVTMLSILSASADLGD 291
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 33/137 (24%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
VS + G +D A Q FAQ+ + D +W MI G + + A++L+ +M+ +RPD+
Sbjct: 54 VSAIVVSGTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDK 113
Query: 73 FTIVRILTA---------------------------------YMYCKCGDVEKAQRVLRK 99
FT +L A Y + CGD+ A+ +
Sbjct: 114 FTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDA 173
Query: 100 MLRKDKFTWTAMIVGLA 116
+++ W+A+ G A
Sbjct: 174 SAKREVVPWSALTAGYA 190
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + DV+SW ++SGY N G+V++ + F +MP R+ W +I GY+R F+EAL F
Sbjct: 82 MPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECF 141
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M + P+++T+V +L+A MY K
Sbjct: 142 KRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAK 201
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG +EKA V + KD TW +I LA+ +D RPD VT+VG+
Sbjct: 202 CGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGI 261
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 262 LSACTHMG 269
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V +WT +V+ ++ + AR+ F P+ D VLW ++ GY+ + A LF
Sbjct: 20 MRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGDMVAARELF 79
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M ++ + +L+ Y G+VE +V +M ++ ++W +I G +
Sbjct: 80 DRMPDCDV----MSWNTVLSG--YANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGL 133
Query: 121 FP-------------TIRPDEVTYVGVLSACTHNGN 143
F + P++ T V VLSAC+ G+
Sbjct: 134 FKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGD 169
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 27/169 (15%)
Query: 1 MKNKDVISW----TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 56
M +DV+SW T ++ Y G + +ARQ F + ++ V WTAMI G +R NR E
Sbjct: 220 MMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEG 279
Query: 57 LTLFPEMQTSNIRPDEFT-----------IVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105
LF MQ NI P+E T I+ MY KCGD+ A R+ + + +D
Sbjct: 280 TKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 339
Query: 106 FTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACTHNG 142
W A+I G A+ D F ++P+++T++G+L AC+H G
Sbjct: 340 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 388
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW+ +++GY G V AR+ F +MP ++ V TAMI+GY + + + AL LF
Sbjct: 206 MPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQPKAALALF 265
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+++ + I PD T+V +++A M+ KC
Sbjct: 266 RDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKC 325
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G++E+A R++ + D + +TA+I GLA ++PD +T+VGVL
Sbjct: 326 GNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDPITFVGVL 385
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 386 TACSHTG 392
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V T +V + G ++ A F ++P+ D +TA+I G + AL++F M
Sbjct: 310 RNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERM 369
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
Q ++PD T V +LTA + G V+K M+R
Sbjct: 370 QVQAVKPDPITFVGVLTACSH--TGLVDKGLEYWEAMVR 406
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 92/188 (48%), Gaps = 49/188 (26%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW +V GY+ G+V++A F +M R+ + W ++I G ++ +E+L +F EM
Sbjct: 193 RDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESLEIFHEM 252
Query: 64 QTSN----IRPDEFTIVRILTA---------------------------------YMYCK 86
Q + ++PD+ TI +L+A MY K
Sbjct: 253 QFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGK 312
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CGDV++A + M KD WTAMI A+ D F ++P+ VT+VG+
Sbjct: 313 CGDVQQAIEIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGL 372
Query: 135 LSACTHNG 142
LSAC+H+G
Sbjct: 373 LSACSHSG 380
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y ++ AR+ F +MP R+ V WTAMI G+ RV EA+ LF EMQ + I+
Sbjct: 131 TSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQ 190
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T+V +++A MY KCG +E+A++V
Sbjct: 191 PDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQV 250
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACTHNG 142
M KD W++MI+G A D F + PD VT++ VLSAC H G
Sbjct: 251 FVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGG 308
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 47/170 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEM-QTSNIRPDEFTIVR 77
G ++ AR FAQ+P + W ++I GY +++ +E + LF ++ +T P+ FT+
Sbjct: 38 GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97
Query: 78 ILTAY---------------------------------MYCKCGDVEKAQRVLRKMLRKD 104
+L A Y KC ++ A++V +M ++
Sbjct: 98 VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157
Query: 105 KFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
WTAMI G A I+PD +T V V+SAC G
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAG 207
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +VS Y G ++ A + F ++P R+ V W+ M+ Y + N EA+ +F
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIF 353
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
+M + + P + T+V +L+A M+ K
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAK 413
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPTIR--PDEVTYVGV 134
CGDV A R+ R M K+ +W MIV A+ F I PDE+TY+GV
Sbjct: 414 CGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGV 473
Query: 135 LSACTHNG 142
LSAC+H+G
Sbjct: 474 LSACSHSG 481
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 34/147 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ V+ +V Y + + AR+ F +M +RD V WT ++DGY R EA +F M
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223
Query: 64 QTSNIR-PDEFTIVRILTAY---------------------------------MYCKCGD 89
+ P+E T+V +A M+ KCG
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGC 283
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V A+ + M KD ++WT+M+ A
Sbjct: 284 VASAKEIFDGMPIKDVYSWTSMVSAYA 310
Score = 42.7 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F M +++ V W MI + + EAL LF + + I PDE T + +L
Sbjct: 415 GDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVL 474
Query: 80 TAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGLAISDPFPTIR---- 125
+A + G V + + ++M + + MI VGL + + F R
Sbjct: 475 SACSH--SGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGL-LEEAFEVARSMPV 531
Query: 126 -PDEVTYVGVLSACTHNGN 143
DE + +L+AC +GN
Sbjct: 532 GADEAGWGALLNACRMHGN 550
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ V++WT +++G++ G++++A +YF +MP ++ V W AMI GY+ + L LF M
Sbjct: 159 RSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRM 218
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
S RP+ ++ +L MYCKCGD+
Sbjct: 219 VESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDL 278
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVLSAC 138
E A ++ M +KD TW AMI G A F +R PD +T+V VLSAC
Sbjct: 279 EDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSAC 338
Query: 139 THNG 142
H G
Sbjct: 339 NHAG 342
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW ++SG+ G +D AR+ F MP R+ V W AMI GY+ A LF
Sbjct: 94 MPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLF 153
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
++ ++T +M K G +E A++ +M K+ TW AMI G
Sbjct: 154 EVAPVRSV----VAWTAMITGFM--KFGKIELAEKYFEEMPMKNLVTWNAMIAG 201
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ S+ +++ Y++ V+ AR +F QMP +D W MI G+ + +A LF M
Sbjct: 67 DIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMP 126
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
N + +++ Y+ + GD++ A+++ + WTAMI G
Sbjct: 127 VRN----SVSWNAMISGYV--ESGDLDLAKQLFEVAPVRSVVAWTAMITGF 171
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL-RVNRFREALTLF 60
K+ +VIS +++ +I G ++ A + F M + V W +M+ GY R + + A LF
Sbjct: 1 KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ PD F+ +L Y++ DVE A+ +M KD +W MI G +
Sbjct: 61 DRIP----EPDIFSYNIMLACYLH--NADVESARLFFDQMPVKDTASWNTMISGFS 110
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 1 MKNKDVISWTDIVSGYIN-RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M K ++W +++GY N RG++ +ARQ F ++PE D + M+ YL A
Sbjct: 31 MTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLF 90
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F +M D + +++ + + G +++A+ + M ++ +W AMI G
Sbjct: 91 FDQMPVK----DTASWNTMISG--FSQNGMMDQARELFLVMPVRNSVSWNAMISG 139
>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
Length = 590
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V +A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 263 MPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVF 322
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M+ S++ PDE ++V +L+A MY K
Sbjct: 323 NHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSK 382
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CG ++ A RV + K W AMI GLA+ F +I+PD +T+VGV
Sbjct: 383 CGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGV 442
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 443 LNACSHSG 450
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +++I+W ++ GY R VD+A + F +MPE+D + W +MI GY++ R +A LF
Sbjct: 201 EKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLF 260
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
N+ P + + Y K G V A+ + +M +D + +M+ G +
Sbjct: 261 ------NVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRY 314
Query: 119 -----------DPFPTIRPDEVTYVGVLSACTHNGNETFVIN 149
+ + PDE + V VLSA G + I+
Sbjct: 315 HMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAID 356
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL-RVNRFREAL 57
M +D +S+ ++ GY+ G V+ A + F MP +R+ + W +MI GY R + A
Sbjct: 167 MPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAE 226
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
LF EM P++ I Y K G +E A+ + M R+D TW MI G
Sbjct: 227 KLFDEM------PEKDLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDG 277
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 8 SWTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+W+D+ + YI G + ARQ F +MPERD V + +MIDGY++ A LF
Sbjct: 137 TWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFD 196
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M + + T ++ Y + V+ A+++ +M KD +W +MI G
Sbjct: 197 LMPRE--KRNLITWNSMIGGYAQ-RADGVDVAEKLFDEMPEKDLISWNSMIGG 246
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F + + W AMI G A + +++ +I+PD
Sbjct: 376 LIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPD 435
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPTIR- 125
T V +L A + G V++ M RK K + M+ LA S R
Sbjct: 436 HITFVGVLNACSHS--GLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARN 493
Query: 126 --------PDEVTYVGVLSACTHN 141
P++V + L+AC+H+
Sbjct: 494 LIEGMPIEPNDVIWRTFLTACSHH 517
>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
Length = 588
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 253 MPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIF 312
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PDE T+V +L+A MY K
Sbjct: 313 SDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSK 372
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CG +++A V ++ K W AMI GLAI F +I+PD++T+VG+
Sbjct: 373 CGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGI 432
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 433 LNACSHSG 440
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY V+IA + FA+MPE+D + W ++IDGY++ R +A LF
Sbjct: 193 KNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYV 252
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V KA+ + +M +D + +M+ G
Sbjct: 253 MP----RRDVVTWATMIDG--YAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNM 306
Query: 115 -----LAISDPFPTIRPDEVTYVGVLSACTHNG 142
+ + + PDE T V VLSA G
Sbjct: 307 EALEIFSDMEKESHLSPDETTLVIVLSAIAQLG 339
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 34/142 (23%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + ARQ F +MP+RD V + +MIDGY++ + RE L
Sbjct: 128 WSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDL 187
Query: 60 FPEMQTSNIR-----------PDEFTIVRILTAYM--------------YCKCGDVEKAQ 94
P+ + I D I L A M Y K G +E A+
Sbjct: 188 MPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAK 247
Query: 95 RVLRKMLRKDKFTWTAMIVGLA 116
+ M R+D TW MI G A
Sbjct: 248 DLFYVMPRRDVVTWATMIDGYA 269
>gi|255564188|ref|XP_002523091.1| magnesium/proton exchanger, putative [Ricinus communis]
gi|223537653|gb|EEF39276.1| magnesium/proton exchanger, putative [Ricinus communis]
Length = 1015
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ D+ SW I++ + G VD+AR F MPER+ + W+ MI+G+++ ++EAL LF
Sbjct: 142 IAQPDLPSWNSIINASVKVGLVDVARGLFDVMPERNVITWSCMINGFVKCGEYKEALALF 201
Query: 61 PEMQTSNIR---PDEFTIVRILTAY---------------------------------MY 84
EMQ +R P+EFT+ +L+A MY
Sbjct: 202 REMQMLEVRDVKPNEFTMSSVLSACGRLGALEHGKWAHAYIEKCEMKIDIVLGTSLIDMY 261
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTY 131
KCG +++A+ V + KD W+AMI GLA+ + F +RP+ VT+
Sbjct: 262 AKCGSIDRARLVFDNLGSNKDVMAWSAMISGLAMHGYGEEGLELFSKMVNQGLRPNNVTF 321
Query: 132 VGVLSACTHNG 142
+ VL AC H G
Sbjct: 322 LAVLYACVHGG 332
>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
[Vitis vinifera]
Length = 836
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V+SW + +G+I G V+ A + F Q+PER+ V W MI G ++ + F +A+ LF
Sbjct: 394 MSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELF 453
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I+ D T++ I +A M+ +C
Sbjct: 454 REMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARC 513
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVL 135
GD + A +V KM +D WTA I +A+ ++PD V +V VL
Sbjct: 514 GDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVL 573
Query: 136 SACTHNGN 143
+AC+H G
Sbjct: 574 TACSHGGQ 581
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 45/179 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV ++ Y G +D + F M ER+ V WT++I GY R +R +EA++LF EM
Sbjct: 164 EDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEM 223
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ IRP T+V +++A MY KCG +
Sbjct: 224 VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAI 283
Query: 91 EKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGVLSA 137
+ A+R+ + + ++ + ++ LAI D RPD VT + +SA
Sbjct: 284 DAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 50/169 (29%)
Query: 21 QVDIARQYFAQMPE---RDYVLW--TAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+D AR+ F E D L+ ++I GY REA+ L+ M + P+ +T
Sbjct: 75 SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
+L+ + Y +CG ++ +V M
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194
Query: 103 KDKFTWTAMIVGLAISD-PFPT-----------IRPDEVTYVGVLSACT 139
++ +WT++I G A D P IRP VT V V+SAC
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACA 243
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V + G A Q F +M ERD WTA I A LF +M ++
Sbjct: 504 TALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVK 563
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML------RKDKFTWTAMIVGLA--ISDPF 121
PD V++LTA + G VE+ + M + + + ++G A + + F
Sbjct: 564 PDVVLFVQVLTACSH--GGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAF 621
Query: 122 PTIR-----PDEVTYVGVLSACTHNGN 143
I+ P++V + +L+AC + N
Sbjct: 622 DLIKSMPMEPNDVVWGSLLAACRVHKN 648
>gi|255541270|ref|XP_002511699.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548879|gb|EEF50368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 474
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +ISW ++V GY G VDIAR++F MP+RD V AM+ GY++ EAL +F
Sbjct: 281 MPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIF 340
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+MQ SN+ PD T++ +L+A MY K
Sbjct: 341 HDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSK 400
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGV 134
CG E A V + K W AMI GLAI +PD++T++G+
Sbjct: 401 CGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDITFIGL 460
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 461 LNACGHAG 468
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 4 KDVISWTDIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++++SW ++SGY+ + ++A F +MPERD + W +MIDG + R +A LF
Sbjct: 221 RNLVSWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDT 280
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M P+ I Y K G V+ A++ M +D AM+ G
Sbjct: 281 M------PERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCM 334
Query: 115 --LAISDPF---PTIRPDEVTYVGVLSACTHNGN 143
L I + PD T + VLSA G+
Sbjct: 335 EALGIFHDMQRESNLCPDNATLLIVLSAIAQLGH 368
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ +++GY+ G +D+ARQ + MP R+ V W +++ GY+R N F A
Sbjct: 185 MPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFELAW 244
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF +M P+ I K G +E AQ + M + +W M+ G A
Sbjct: 245 NLFEKM------PERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWANMVDGYA 297
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV ++ Y+ +D ARQ F +MP RD V + +MI GY++ A L+
Sbjct: 156 GSDVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDV 215
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N R + + +L+ YM G E A + KM +D +W +MI G A
Sbjct: 216 MPI-NWR-NLVSWNSLLSGYMRSDNG-FELAWNLFEKMPERDLISWNSMIDGCA 266
>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
Length = 612
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV---------- 50
M KD+ISW ++ GY+ G+++ A+ F +MP+RD V W M+DGY ++
Sbjct: 247 MPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLF 306
Query: 51 --------------------NRF-REALTLFPEMQT-SNIRPDEFTIVRILTAYM----- 83
NR+ +EA+ +F +M+ S++ PDE T+V +L+A
Sbjct: 307 DRMPLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRL 366
Query: 84 ----------------------------YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
Y KCG ++K+ RV ++ K W AMI GL
Sbjct: 367 SKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGL 426
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
AI F +I+PD++T++GVL+AC+H+G
Sbjct: 427 AIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSG 465
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 20/155 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW ++SGY R V++A++ F +MPE+D + W ++IDGY++ R +A +LF
Sbjct: 216 EKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----- 115
+M P + Y K G V +A+ + +M +D + +MI G
Sbjct: 276 NKM------PKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRY 329
Query: 116 ---AIS-----DPFPTIRPDEVTYVGVLSACTHNG 142
AI + + PDE T V VLSA G
Sbjct: 330 HKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLG 364
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 60/142 (42%), Gaps = 34/142 (23%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
W+D+ + YI G + ARQ F +MP RD V + +MIDGY++ A LF
Sbjct: 153 WSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDL 212
Query: 63 M--QTSNI------------RPDEFTIVRILTAYM--------------YCKCGDVEKAQ 94
M + N+ R D + + L M Y K G +E A+
Sbjct: 213 MPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAK 272
Query: 95 RVLRKMLRKDKFTWTAMIVGLA 116
+ KM ++D TW M+ G A
Sbjct: 273 SLFNKMPKRDVVTWATMVDGYA 294
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/185 (34%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV ++ Y+ GQ +ARQ F MP ++ V W +MI G F+EAL +F
Sbjct: 270 HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRR 329
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQT ++PD T+V +L + MY KCG
Sbjct: 330 MQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGS 389
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSA 137
+++A V + M KD +++TAMIVG LAI P +RPD VT VGVLSA
Sbjct: 390 IDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSA 449
Query: 138 CTHNG 142
C+H G
Sbjct: 450 CSHAG 454
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 50/175 (28%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ + F Q P D + WT +I Y ++ EA+ F M N D T+
Sbjct: 183 YAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTL 239
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
V +L+A MY KCG A+++ M
Sbjct: 240 VVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLM 299
Query: 101 LRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNGN 143
K+ +W +MI GLA F ++PD VT VGVL++C + G+
Sbjct: 300 PVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGD 354
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G +D A F M +D +TAMI G+ + AL +F EM +RPD
Sbjct: 380 LVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPD 439
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T+V +L+A + G +E+ +R + M R
Sbjct: 440 HVTLVGVLSACSH--AGLLEEGRRHFQDMSR 468
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + WT ++ Y G ++ AR F QM ++D V WT MI R +E +LF ++
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM 289
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
S +RP+E+T +L A ++Y KCG+ E
Sbjct: 290 GSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTE 349
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTI-----RPDEVTYVGVLSACT 139
A+RV +M R D +WT++IVG A + F ++ +PDE+T+VGVLSACT
Sbjct: 350 TARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACT 409
Query: 140 HNG 142
H G
Sbjct: 410 HAG 412
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 50/184 (27%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ SW ++SGY N G+++ AR+ F +MP RD W A+I GY+ + EAL LF M
Sbjct: 127 KDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMM 186
Query: 64 QT------------------------------------SNIRPDEFTIVRILTAYMYCKC 87
Q S + DE +L +Y KC
Sbjct: 187 QENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLD--LYGKC 244
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPF--PTIRPDEVTYVGVL 135
G + +A+ + +M KD +WT MI G ++ +RP+E T+ GVL
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304
Query: 136 SACT 139
+AC
Sbjct: 305 NACA 308
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G + AR+ F QMP D V WT++I GY + + AL F + S +
Sbjct: 336 SALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTK 395
Query: 70 PDEFTIVRILTAYMYC---------------KCGDVEKAQR---VLRKMLRKDKFTWTAM 111
PDE T V +L+A + K G V A V+ + R +F
Sbjct: 396 PDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAEN 455
Query: 112 IVGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
I+ D P ++PD+ + +L C +GN
Sbjct: 456 II-----DNMP-MKPDKFLWASLLGGCRIHGN 481
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+ +I+ + + ++ A Y ++P+ L++ +I LR + + + SN
Sbjct: 35 FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNF 94
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
P R++ +MY KCG + AQ + ++ +KD +W MI G A
Sbjct: 95 IPGIVISNRLI--HMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYA 140
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTA-----MIDGYLRVNRFREALTL 59
D I++ ++S + G VDI +YF + E+ ++ TA +ID R RF+EA +
Sbjct: 397 DEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENI 456
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKC-GDVEKAQRVLRKML 101
M ++PD+F +L C+ G++E A+R + +
Sbjct: 457 IDNMP---MKPDKFLWASLLGG---CRIHGNIELAERAAKALF 493
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A+ F ++P++D W MI GY V R +A LF EM D
Sbjct: 104 LIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMP----HRD 159
Query: 72 EFTIVRILTAYM 83
F+ +++ Y+
Sbjct: 160 NFSWNAVISGYV 171
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 82/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT +V G G VD AR+ F MPER+ + W AMI GY++ RF +AL +F +M+
Sbjct: 160 DVVSWTTMVGGLCRLGLVDDARKLFDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMR 219
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I + F + A MYCKCG VE
Sbjct: 220 ALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVE 279
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPF--------PTIRPDEVTYVGVLSACT 139
+A V + + K +W MI GLA+ D + PD+VT V VL+AC
Sbjct: 280 EAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACA 339
Query: 140 HNG 142
H G
Sbjct: 340 HTG 342
>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 642
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+VISW ++ GYI G + AR F QMP ++ V W+ MI GY R + +AL LF
Sbjct: 286 MPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELF 345
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+ +I+PDE I+ I++A MY KC
Sbjct: 346 ERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKC 405
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPF--PTIRPDEVTYVGVL 135
G +EKA ++ KD ++ MI LA + D I+PD VT++GVL
Sbjct: 406 GSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVL 465
Query: 136 SACTHNG 142
+AC H G
Sbjct: 466 TACNHGG 472
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW ++SGY N +VDIAR++F +MPER+ V WT+MI GY++ EA LF
Sbjct: 162 MCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLF 221
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
M ++ + + YM GD A+ + KM D +W MI G
Sbjct: 222 DSMPVKDLASWNVMV----SGYM--DIGDCVNARIIFGKMPIHDTGSWNIMISGF 270
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ SW +VSGY++ G AR F +MP D W MI G+ + A F
Sbjct: 224 MPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFF 283
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-D 119
M P++ I + Y K GD A+ + +M K+ TW+ MI G A +
Sbjct: 284 DRM------PNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQ 337
Query: 120 PFPT-----------IRPDEVTYVGVLSACTHNG 142
P I+PDE +G++SAC+ G
Sbjct: 338 PLKALELFERFKEQDIKPDETFILGIISACSQLG 371
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+I ++ ++ +VD ARQ F +M E+D V W MI GY +R A F M
Sbjct: 135 DLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMP 194
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N+ I Y K GD+ +AQ + M KD +W M+ G
Sbjct: 195 ERNVVSWTSMICG------YVKAGDMAEAQVLFDSMPVKDLASWNVMVSG 238
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G D A + F ++ + + LWT++I GY+ ++ EA +LF +M+ I FTI
Sbjct: 45 YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
+L A ++ +C V+ A++ +M
Sbjct: 105 SSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCE 164
Query: 103 KDKFTWTAMIVGLAISD 119
KD +W MI G +D
Sbjct: 165 KDIVSWNMMISGYGNND 181
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ +T ++ Y G ++ A Q F +D + ++ MI R+A+ LF +MQ
Sbjct: 391 DLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQ 450
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKM 100
+NI+PD T + +LTA C G V++ ++ ++M
Sbjct: 451 RANIKPDSVTFLGVLTA---CNHGGLVDEGRKYFKQM 484
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT+++ Y G ++ A F +P +D V WTAM+ GY + R +EAL F
Sbjct: 204 MSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYF 263
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
+MQ + DE T+ +++A MY
Sbjct: 264 QKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYS 323
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-----------SDPFPT-IRPDEVTYVG 133
KCG ++A +V M ++ F++++MI+G A+ D T IRP++VT++G
Sbjct: 324 KCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIG 383
Query: 134 VLSACTHNG 142
+LSAC+H G
Sbjct: 384 ILSACSHAG 392
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ +V+ + ++ Y G D A + F M ER+ +++MI GY R AL LF +
Sbjct: 309 SGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHD 368
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGL 115
M + IRP++ T + IL+A + G VE+ +++ KM + D + ++G
Sbjct: 369 MLKTEIRPNKVTFIGILSACSH--AGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGR 426
Query: 116 A--ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
A + + ++ P+ + +L AC +GN
Sbjct: 427 AGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461
>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14820-like, partial [Brachypodium
distachyon]
Length = 498
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD++S T +V GY G+++IAR F M E+D V W+AMI Y N+ E L LF
Sbjct: 155 MQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAENNQPSEVLNLF 214
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + PDE T++ +++A M+ KC
Sbjct: 215 NKMQGCGVSPDEITMLSVISACANIGSLDKARWIHSIVGNHGFYKILSICNALIDMFSKC 274
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G + A + M RK+ TWT+MI A+ P+ + P+ VT++ +L
Sbjct: 275 GSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLL 334
Query: 136 SACTHNG 142
AC H G
Sbjct: 335 YACCHAG 341
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D T +V Y +V AR+ F MPERD V W M+D Y +RE L L +
Sbjct: 25 DEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNYRETLLLLNK 84
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+ S + PD+ + +L+ MY C D
Sbjct: 85 MKRSRVVPDQVILATVLSTCGHTRHLRSGKTIHSYIQVSDIFVDARLSSALINMYASCMD 144
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP--------DEVTYVGVLSACTHN 141
+E A ++ M RKD + TAM+ G A + R D V++ ++SA N
Sbjct: 145 MEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEKDVVSWSAMISAYAEN 204
Query: 142 GNETFVINSCN 152
+ V+N N
Sbjct: 205 NQPSEVLNLFN 215
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + +A F MP ++ + WT+MI + ALTLF +M+ + P+ T + +L
Sbjct: 275 GSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLVLL 334
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK 103
Y C G V + + + ML++
Sbjct: 335 --YACCHAGLVYEGRSLFECMLQE 356
>gi|255541290|ref|XP_002511709.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548889|gb|EEF50378.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 450
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +ISW ++V GY G VDIAR++F MP+RD V AM+ GY++ EAL +F
Sbjct: 257 MPERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCMEALGIF 316
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+MQ SN+ PD T++ +L+A MY K
Sbjct: 317 HDMQRESNLCPDNATLLIVLSAIAQLGHIEKGVEIHCYIQENGFSLEEKLGVALIDMYSK 376
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGV 134
CG E A V + K W AMI GLAI +PD++T++G+
Sbjct: 377 CGSAENAMLVFEGIKGKTADHWNAMINGLAIHGMGELALHFLIEMERVGSKPDDITFIGL 436
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 437 LNACGHAG 444
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 4 KDVISWTDIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++++SW ++SGY+ + ++A F +MPERD + W +MIDG + R +A LF
Sbjct: 197 RNLVSWNSLLSGYMRSDNGFELAWNLFEKMPERDLISWNSMIDGCAKRGRMEDAQALFDT 256
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M P+ I Y K G V+ A++ M +D AM+ G
Sbjct: 257 M------PERTIISWANMVDGYAKLGYVDIARKFFDNMPDRDVVACNAMMSGYVQNGYCM 310
Query: 115 --LAISDPF---PTIRPDEVTYVGVLSACTHNGN 143
L I + PD T + VLSA G+
Sbjct: 311 EALGIFHDMQRESNLCPDNATLLIVLSAIAQLGH 344
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ +++GY+ G +D+ARQ + MP R+ V W +++ GY+R N F A
Sbjct: 161 MPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMPINWRNLVSWNSLLSGYMRSDNGFELAW 220
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA- 116
LF +M P+ I K G +E AQ + M + +W M+ G A
Sbjct: 221 NLFEKM------PERDLISWNSMIDGCAKRGRMEDAQALFDTMPERTIISWANMVDGYAK 274
Query: 117 -----ISDPFPTIRPDE--VTYVGVLSACTHNG 142
I+ F PD V ++S NG
Sbjct: 275 LGYVDIARKFFDNMPDRDVVACNAMMSGYVQNG 307
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y+ +D ARQ F +MP RD V + +MI GY++ A L+ M
Sbjct: 134 DVFLQNCLIGLYVKCRCIDYARQVFDKMPMRDSVSYNSMIAGYVKHGNIDLARQLYDVMP 193
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
N R + + +L+ YM G E A + KM +D +W +MI G A
Sbjct: 194 I-NWR-NLVSWNSLLSGYMRSDNG-FELAWNLFEKMPERDLISWNSMIDGCA 242
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 90/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+++SW ++ GY G++ +A++ F M ERD W++ IDGY++ +REA+ +F
Sbjct: 175 MQGKNLVSWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVF 234
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + +E T+V +L+A MY KC
Sbjct: 235 EKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAKC 294
Query: 88 GDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
G +E+A V R + + D F W AMI GLA IR DE+TY+
Sbjct: 295 GAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGIRSDEITYLC 354
Query: 134 VLSACTHNG 142
+L+AC H G
Sbjct: 355 LLAACAHGG 363
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SW ++ GY+ G++DIA F +M E++ + WT MI GY++ + +EAL LF EMQ
Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ 239
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S++ PD ++ L+A MY KCG++E
Sbjct: 240 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEME 299
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGL--------AISDPFPT----IRPDEVTYVGVLSACT 139
+A V + + +K WTA+I G AIS I+P+ +T+ VL+AC+
Sbjct: 300 EALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACS 359
Query: 140 HNG 142
+ G
Sbjct: 360 YTG 362
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A + F + ++ WTA+I GY REA++ F EMQ I+P+
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T +LTA Y G VE+ + + M R
Sbjct: 348 VITFTAVLTACSY--TGLVEEGKLIFYSMER 376
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW+ ++SGY G ++ ARQ F MP R+ V W AMI GY + ++ +A+ LF
Sbjct: 219 MMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELF 278
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+MQ + P++ T+V +L+A MY K
Sbjct: 279 RQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAK 338
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPF--------PTIRPDEVTYVGV 134
CG V +A+ V +M +D +W+ +I+GLA+ ++ F + P++++++G+
Sbjct: 339 CGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGL 398
Query: 135 LSACTHNG 142
L+ACTH G
Sbjct: 399 LTACTHAG 406
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVL-WTAMIDGYLRVNRFREALTL 59
++ D +SW ++ GY+ G++D+A F +MPE++ + WT MI GY++ +EAL L
Sbjct: 171 IQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQL 230
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F EMQ SN+ PD ++ L+A MY K
Sbjct: 231 FHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAK 290
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGL--------AISDPFPT----IRPDEVTYVGV 134
CG++E+A V + M K WTA+I G AIS ++P+ +T+ V
Sbjct: 291 CGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAV 350
Query: 135 LSACTHNG 142
L+AC++ G
Sbjct: 351 LTACSYTG 358
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F M + +WTA+I GY REA++ F EMQ ++P+
Sbjct: 284 LIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPN 343
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T +LTA Y G VE+ + V + R
Sbjct: 344 AITFTAVLTACSY--TGLVEEGKSVFNTIER 372
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 47/185 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFPE 62
D+I T ++ Y G V+ AR F M ER+ V W MI Y++ F A+++F +
Sbjct: 64 DMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQ 123
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ+ N++P E T+V +L+A MYCKCG
Sbjct: 124 MQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGA 183
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+E A V + RK+ F W ++IVGL ++ I+PD VT+VG+LS
Sbjct: 184 LEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSG 243
Query: 138 CTHNG 142
C+H+G
Sbjct: 244 CSHSG 248
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W+ ++SGY +G V AR F ++P R+ V W ++I GY + EAL F
Sbjct: 121 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 180
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ PDE TI +L+A MY KC
Sbjct: 181 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 240
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVL 135
GD+ A+ + M +++ W +MI G AI F + PDE+T++ VL
Sbjct: 241 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 300
Query: 136 SACTHNG 142
SAC H G
Sbjct: 301 SACAHGG 307
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M + ++W +++ G+ G + AR++F +P R+ V WT M+DGY R A
Sbjct: 57 MSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAARE 116
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F M N F +++ Y CK G+V++A+ + ++ ++ W ++I G A +
Sbjct: 117 VFEGMPQRNF----FAWSSMISGY--CKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQN 170
Query: 119 -------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+ F ++ PDEVT VLSAC+ G
Sbjct: 171 GFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLG 206
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D +SW +++GY G+V++ + F +MPER+ W +I GY++ F E L F
Sbjct: 233 MPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESF 292
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M ++ P++FT+V +L+A MY K
Sbjct: 293 KRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAK 352
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGV 134
CG +E A V + RKD +W +I GLAI P PD VT+VG+
Sbjct: 353 CGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGI 412
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 413 LSACTHMG 420
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ WT I++GYI G V R+ F PERD V+W+ +I GY+ A LF
Sbjct: 171 MHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELF 230
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M P+ T+ Y G+VE ++V +M ++ F+W +I G +
Sbjct: 231 DKM------PNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGL 284
Query: 121 FPT-------------IRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC+ G
Sbjct: 285 FSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLG 319
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 33/127 (25%)
Query: 21 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
++ AR+ F ++P+ + W AM GYL+ R+ + LF E+ P+ FT I+
Sbjct: 59 RIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIK 118
Query: 81 AY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFT 107
+ MY K G VE A +V +M ++
Sbjct: 119 SCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVV 178
Query: 108 WTAMIVG 114
WTA+I G
Sbjct: 179 WTAIING 185
>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
Length = 617
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW ++ GY+ G+++ A+ F MP RD V W MIDGY ++ +A TLF
Sbjct: 251 MPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLF 310
Query: 61 PEM--------------------------------QTSNIRPDEFTIVRILTAY------ 82
+M + S++ PDE T+V +L+A
Sbjct: 311 DQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRL 370
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A V + K W AMI GL
Sbjct: 371 SKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGL 430
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
AI F +I+PD++T+VGVL+AC+H+G
Sbjct: 431 AIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSG 469
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW I+SGY VDIA FA+MPE+D + W +MIDGY++ R +A LF
Sbjct: 222 KNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDA 281
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V +A+ + +M +D ++ +M+ G
Sbjct: 282 MP----RRDVVTWATMIDG--YAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHM 335
Query: 115 -----LAISDPFPTIRPDEVTYVGVLSACTHNG 142
+ + + PDE T V VLSA G
Sbjct: 336 EALEIFSDMEKESHLSPDETTLVIVLSAIAQLG 368
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 36/137 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTLFPE------ 62
++ Y+ G + ARQ F +MP+RD V + +MIDGY++ + RE L P
Sbjct: 166 LIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLI 225
Query: 63 ---------MQTSNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQRVLRK 99
QTS D I L A M Y K G +E A+ +
Sbjct: 226 SWNSIISGYAQTS----DGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDA 281
Query: 100 MLRKDKFTWTAMIVGLA 116
M R+D TW MI G A
Sbjct: 282 MPRRDVVTWATMIDGYA 298
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SG++ GQ+ AR F +M ++ WTA++ GY R+ + +AL F
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFF 237
Query: 61 PEMQTSNIRPDEFTIVRIL---------------------------------TAYMYCKC 87
MQ I PDE ++V +L MY KC
Sbjct: 238 RRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKC 297
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +++ +R+ +M +D +W+ MIVGLA I P +T+VG+L
Sbjct: 298 GSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLL 357
Query: 136 SACTHNG 142
+AC H G
Sbjct: 358 TACAHAG 364
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D R+ F QM ERD + W+ MI G R REA+ LF EMQ + I P
Sbjct: 290 LIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPS 349
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA-------- 116
T V +LTA + G + + R M R + + ++GL+
Sbjct: 350 IITFVGLLTACAH--AGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALE 407
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P +PD + +LS+C +GN
Sbjct: 408 LVKKMPR-KPDSPIWGSLLSSCRSHGN 433
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T +++ Y QV +AR F M +++ V W+AM+ GY RV EAL LF EMQ +
Sbjct: 214 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 273
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
PDE T+V +++A MY KCG +E+A+
Sbjct: 274 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 333
Query: 96 VLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
V M+ KD W+AMIVG AI D +RP+ VT++GVLSAC H+G
Sbjct: 334 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 392
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ AR F M E+D W+AMI G+ +AL LF M +R
Sbjct: 316 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 375
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQR 95
P+ T + +L+A + G VE +R
Sbjct: 376 PNNVTFIGVLSACAH--SGLVEDGRR 399
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/179 (34%), Positives = 86/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T +++ Y QV +AR F M +++ V W+AM+ GY RV EAL LF EMQ +
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGV 224
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
PDE T+V +++A MY KCG +E+A+
Sbjct: 225 EPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARG 284
Query: 96 VLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
V M+ KD W+AMIVG AI D +RP+ VT++GVLSAC H+G
Sbjct: 285 VFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSG 343
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ AR F M E+D W+AMI G+ +AL LF M +R
Sbjct: 267 TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVR 326
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQR 95
P+ T + +L+A + G VE +R
Sbjct: 327 PNNVTFIGVLSACAH--SGLVEDGRR 350
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 52/190 (27%)
Query: 5 DVISWTDIVSGYINRG---QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
D +SW I++GY+ +G QV A + F +M E+D V W+A+I GY + + EAL +F
Sbjct: 194 DSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 253
Query: 62 EMQTSNIRPDEFTIVRILTAY-------------------------------------MY 84
EM + +R DE +V +L+A MY
Sbjct: 254 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMY 313
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYV 132
KCG VE A V M K +W A+I+GLA++ D F ++ P+E+T++
Sbjct: 314 MKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFM 373
Query: 133 GVLSACTHNG 142
GVL AC H G
Sbjct: 374 GVLGACRHMG 383
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 79/198 (39%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT------- 74
+D + Q F ++ + +W M+ Y++ N +AL L+ M +N+ PD +T
Sbjct: 79 LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 138
Query: 75 -IVRILT-------------------------AYMYCKCGDVEKAQ-------------- 94
VR+L MY CG++ A+
Sbjct: 139 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSW 198
Query: 95 --------------------RVLRKMLRKDKFTWTAMIVGLAISDPFPT----------- 123
++ +M KD +W+A+I G + +
Sbjct: 199 NSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNAN 258
Query: 124 -IRPDEVTYVGVLSACTH 140
+R DEV V VLSAC H
Sbjct: 259 GMRLDEVVVVSVLSACAH 276
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 48/188 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+D+ SW ++SGY G++D ARQ F +MPE+D V WT MI G L+V F EAL +F
Sbjct: 165 NRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHN 224
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M + P+E+T+ L A MY KCG+
Sbjct: 225 MLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGE 284
Query: 90 VEKAQRVLRK--MLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
+E A ++ L++ + W AMI G A+ + P++VT+V +L
Sbjct: 285 LEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALL 344
Query: 136 SACTHNGN 143
+AC+H GN
Sbjct: 345 NACSH-GN 351
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++V T ++ Y+ G ++ A F+ MPE+D V W+ MI GY ++AL LF +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ+ N++PD +T+V +L+A MY KCG
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
V +A + M +KD+ W AM+VGL+++ IRPDE T++G+L
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426
Query: 138 CTHNG 142
CTH G
Sbjct: 427 CTHGG 431
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV T ++S Y+ D A + F +P+++ V WTA+I GY+ FREA+ F +
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ ++PD F++V++L A MY KCG+
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSA 137
+E+A + M KD +W+ MI G A + D F ++PD T VGVLSA
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325
Query: 138 CTHNG 142
C G
Sbjct: 326 CATLG 330
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 45/179 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ ++ G + ++ F+Q+ E + LW MI G + + F +A+ L+ M+ P+
Sbjct: 54 ILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPN 113
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
FTI +L A +Y KC + + A +V
Sbjct: 114 NFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFD 173
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNGNET 145
+ K+ +WTA+I G S F ++PD + V VL+AC G+ T
Sbjct: 174 DIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V A + F M ++D V+W AM+ G + +LF ++ IR
Sbjct: 355 TALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIR 414
Query: 70 PDEFTIVRILTAYMYCKC---GDVEKAQRVLRKMLR 102
PDE T + +L C C G V + ++ M R
Sbjct: 415 PDENTFIGLL-----CGCTHGGFVNEGRQFFNNMKR 445
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VI T ++ Y+ +D AR F +MP RD V W+ MI GY + R E+L LF M
Sbjct: 338 QNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERM 397
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +N +P+E T+V +L+A MY KCG V
Sbjct: 398 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHV 457
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPT--------IRPDEVTYVGVLSAC 138
+A+ V +M +K TW +MI GLA++ D I+P+EVT+V +L+AC
Sbjct: 458 ARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTAC 517
Query: 139 THNG 142
TH G
Sbjct: 518 THAG 521
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++GY G V+ AR+ F MP R W +MI Y FREALTLF
Sbjct: 235 MPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLF 294
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
+M P+ TI + + MY KC
Sbjct: 295 DQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCR 354
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
+++A+ +M R+D W+ MI G + + P ++ +P+EVT VGVLS
Sbjct: 355 AIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLS 414
Query: 137 ACTHNGNE 144
AC G++
Sbjct: 415 ACAQLGSD 422
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRP 70
++ Y G V AR F +M ++ V W +MI G L +N F E A+ L+ +M I+P
Sbjct: 447 LIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRG-LALNGFAEDAIALYRKMVGDGIQP 505
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+E T V +LTA + G V+K +M +K
Sbjct: 506 NEVTFVALLTACTH--AGLVDKGIAFFEEMKKK 536
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + TA++D Y + AL F EM + P I Y K GDVE+A+R
Sbjct: 208 DVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITG------YSKSGDVEEARR 261
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+ M R+ +W +MI A F P+ +T V S C G+
Sbjct: 262 LFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGD 321
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 83/185 (44%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W+ + Y G+VD AR F +MP RD V WTAM++ Y R E LF
Sbjct: 194 DADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVR 253
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M S I+P+EFT +L A +MY K GD
Sbjct: 254 MLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGD 313
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTI-----------RPDEVTYVGVLSA 137
+ A RV R M + D +WTAMI G A + P + RPD VT+VGVLSA
Sbjct: 314 MGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSA 373
Query: 138 CTHNG 142
C H G
Sbjct: 374 CAHAG 378
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 51/196 (26%)
Query: 1 MKNKDVISWTDIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
+ + DV S+ +V+ G RG AR F +MP RD+ W+A++ + R + R AL
Sbjct: 87 LPSTDVCSYNTLVAALGRSPRGLAS-ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALA 145
Query: 59 LFP----------------------------------EMQTSNIRP--DEFTIVRILTAY 82
++ E+ +R D +V A
Sbjct: 146 IYRRMLREPGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALAD 205
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVT 130
MY KCG V+ A+ V +M +D +WTAM+ L + I+P+E T
Sbjct: 206 MYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFT 265
Query: 131 YVGVLSACTHNGNETF 146
Y GVL AC +E
Sbjct: 266 YAGVLRACAEFTSEKL 281
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G + A + F MP+ D V WTAMI GY + + EAL F + S R
Sbjct: 302 SALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCR 361
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF-------TWTAMIVGLAISDPFP 122
PD T V +L+A + G V+K + + KD++ + +I L+ S F
Sbjct: 362 PDHVTFVGVLSACAH--AGLVDKGLSIFHSI--KDEYGIEHTADHYACVIDLLSRSGLFE 417
Query: 123 ---------TIRPDEVTYVGVLSACTHNGN 143
+++P++ + +L C + N
Sbjct: 418 RAEEMINTMSVKPNKFLWASLLGGCRIHKN 447
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y G V+ AR+ F M ER+ V WT+MI GY ++ +F++A+ LF +MQ + ++
Sbjct: 99 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVDLFRDMQITGMK 158
Query: 70 PDEFTIVRILT---------------AY------------------MYCKCGDVEKAQRV 96
D+ TI +++ AY MY KCGD+ KA +
Sbjct: 159 ADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDITKAHEI 218
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFP------TIRPDEVTYVGVLSACTHNG 142
+ ++D F+WTAMI+G ++ D F + P+EVT++GVL++C+H G
Sbjct: 219 FCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGG 277
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQM---PER--DYVLWTAMI----DGYLRVNRFRE 55
D +SW I+SGY+ G + A Q F QM P R D L A++ G +V R
Sbjct: 24 DTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKVGRLCH 83
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+L + + MY KCG VE A++V M ++ WT+MI G
Sbjct: 84 SLVVVNGAGINCYMGSSLI-------SMYAKCGLVEDARKVFHGMHERNVVCWTSMISGY 136
Query: 116 AISDPFPT------------IRPDEVTYVGVLSACTHNG 142
F ++ D+ T V+S+C G
Sbjct: 137 TQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMG 175
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ ++ Y G + A + F + +RD WTAMI G+ EAL LF +
Sbjct: 193 GKELSVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFAQ 252
Query: 63 MQ-TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
M+ + P+E T + +LT+ + G VE+ ++M
Sbjct: 253 MEGEGKVMPNEVTFLGVLTSCSH--GGLVEQGFHHFQRM 289
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+WT +V GY RG++ AR+ F MP R+ V W M+ GY+ + EAL F
Sbjct: 218 MPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCF 277
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
+M + ++P+E +V IL+A MY K
Sbjct: 278 NDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAK 337
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTI-----RPDEVTYVGV 134
CG ++ A+RV + ++D TWT+MI GL++ F + +PD++T +GV
Sbjct: 338 CGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGV 397
Query: 135 LSACTHNG 142
L+ C+H+G
Sbjct: 398 LNGCSHSG 405
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++D AR+ F + +RD + WT+MI G E L F EM +
Sbjct: 329 TALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFK 388
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA--ISDP 120
PD+ T++ +L + G VE+ + M+ + + + ++G A +
Sbjct: 389 PDDITLLGVLNGCSH--SGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESA 446
Query: 121 FPTIR-----PDEVTYVGVLSACTHNGN 143
F I+ PD V + +LSAC +G+
Sbjct: 447 FEAIKSMPMEPDVVAWRALLSACRIHGD 474
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +SWT ++ GY N G VD AR+ F +D +W AMI GY++ N F+E L +F
Sbjct: 166 MPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ + + PDE IV IL+A MY KC
Sbjct: 226 RLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKC 285
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++ A+ + +M ++D W AMI G+A+ I+PD +T++ V
Sbjct: 286 GHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVW 345
Query: 136 SACTHNG 142
AC+++G
Sbjct: 346 XACSNSG 352
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G +D+A+ F +M +RD V W AMI G A+ LF EM+ + I+
Sbjct: 276 TGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIK 335
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T + + A G V++ R+ +M
Sbjct: 336 PDNITFIAVWXA--CSNSGMVDEGIRIWNRM 364
Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 44/130 (33%), Gaps = 49/130 (37%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
ARQ F +MPE V WT MI Y Y
Sbjct: 159 ARQVFDEMPELSAVSWTVMI-------------------------------------YGY 181
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYV 132
GDV+ A+ + KD W AMI G ++ F + PDE V
Sbjct: 182 ANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIV 241
Query: 133 GVLSACTHNG 142
+LSAC H G
Sbjct: 242 TILSACAHMG 251
>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
Length = 579
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 66/219 (30%), Positives = 96/219 (43%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV---------- 50
M KD+ISW ++ GY+ G+++ A+ F +P RD V W MIDGY ++
Sbjct: 213 MPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLF 272
Query: 51 --------------------NRFR-EALTLFPEMQT-SNIRPDEFTIVRILTAY------ 82
NRF EAL +F +M+ S++ PDE T+V +L+A
Sbjct: 273 DQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRL 332
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A V + K W AMI GL
Sbjct: 333 SKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGL 392
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
AI F +I+PD++T+VGVL+AC+H+G
Sbjct: 393 AIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSG 431
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 22/154 (14%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY + VDIA + FA+MPE+D + W +MIDGY++ R +A LF
Sbjct: 184 KNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDM 243
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF- 121
+ R D T ++ Y K G V +A+ + +M +D + +M+ G + + F
Sbjct: 244 VP----RRDVVTWATMIDG--YAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGY-VQNRFH 296
Query: 122 -------------PTIRPDEVTYVGVLSACTHNG 142
+ PDE T V VLSA G
Sbjct: 297 MEALEIFSDMEKESHLSPDETTLVIVLSAIAQLG 330
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
W+D+ + Y+ G + ARQ F +MP+RD V + +MIDGY++ A LF
Sbjct: 119 WSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELF-- 176
Query: 63 MQTSNIRPDEFTIV----RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
++ P E + +++ Y G V+ A ++ +M KD +W +MI G
Sbjct: 177 ----DLMPREMKNLISWNSLISGYAQTSEG-VDIASKLFAEMPEKDLISWNSMIDG 227
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SWT ++ GY G D AR F MP ++ W +I Y + + +EAL +F
Sbjct: 288 MPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIF 347
Query: 61 PEMQTSNI-RPDEFTIVRILTAY---------------------------------MYCK 86
E+Q S I +PDE T+V L+A MY K
Sbjct: 348 NELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAK 407
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CG +EKA V + +D + W+AMI GL + D F ++P+ VT+ V
Sbjct: 408 CGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNV 467
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 468 LCACSHAG 475
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 33/145 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ +V Y G + +A + F + +D V W +MI + + N +AL LF +M+
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+ P+ T+V +L+A MY KCG V+
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA 116
AQ++ +M +D F+WT M+ G A
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYA 304
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 50/140 (35%), Gaps = 50/140 (35%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G VD A++ F +MPERD WT M+DGY
Sbjct: 272 YTKCGSVDDAQKLFDEMPERDVFSWTIMLDGY---------------------------- 303
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF---P 122
K GD + A+ V M K+ W +I LAI +
Sbjct: 304 ---------AKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSK 354
Query: 123 TIRPDEVTYVGVLSACTHNG 142
+PDEVT V LSAC G
Sbjct: 355 IAKPDEVTLVSTLSACAQLG 374
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 46/163 (28%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFTIVRILT 80
+D AR F Q+P+ + W +I Y + ++ +F ++ P++FT ++
Sbjct: 75 LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134
Query: 81 A---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFT 107
A Y CGD+ A+R+ + + KD +
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194
Query: 108 WTAMIVGLA------------ISDPFPTIRPDEVTYVGVLSAC 138
W +MI A + + P+ VT VGVLSAC
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSAC 237
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ AR F MP++ V WTA++ GY F A+ F
Sbjct: 179 MQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF 238
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
MQ PD+ +IV +L A Y YC KC
Sbjct: 239 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKC 298
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGV 134
G +++A ++ M KD +W+ M+ GLA + T++P+ +T+VG+
Sbjct: 299 GCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGL 358
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 359 LSACSHAG 366
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W+ ++SGY +G V AR F ++P R+ V W ++I GY + EAL F
Sbjct: 250 MPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ PDE TI +L+A MY KC
Sbjct: 310 GKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKC 369
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVL 135
GD+ A+ + M +++ W +MI G AI F + PDE+T++ VL
Sbjct: 370 GDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 429
Query: 136 SACTHNG 142
SAC H G
Sbjct: 430 SACAHGG 436
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M + ++W +++ G+ G + AR++F +P R+ V WT M+DGY R A
Sbjct: 186 MSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAARE 245
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F M N F +++ Y CK G+V++A+ + ++ ++ W ++I G A +
Sbjct: 246 VFEGMPQRNF----FAWSSMISGY--CKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQN 299
Query: 119 -------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+ F ++ PDEVT VLSAC+ G
Sbjct: 300 GFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLG 335
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 45/170 (26%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
G ++ AR+ F +M + D V W+AMI GY+RV R +A+ LF EMQ + PDE T+V
Sbjct: 61 GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120
Query: 78 ILTAY---------------------------------MYCKCGDVEKAQRVLRKMLRKD 104
+L+A M+ KCGDV+KA + R M ++
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180
Query: 105 KFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
+WT++I GLA+ + PD+V ++G+LSAC+H+G
Sbjct: 181 IVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSG 230
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G VD A F M ER+ V WT++I G R EA+ +F EM S + PD+ + +L
Sbjct: 164 GDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLL 223
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKD 104
+A + G V+K +R M RKD
Sbjct: 224 SACSH--SGLVDKGKRYFDSM-RKD 245
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 71 DEFTIVRILTAYMYCKC----GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFP 122
DE + L +MYC C G +E A++V +M + D +W+AMI G SD
Sbjct: 43 DEVNVQNTLV-HMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAIN 101
Query: 123 TIR--------PDEVTYVGVLSACTHNG 142
R PDE+T V VLSACT G
Sbjct: 102 LFREMQIKGVCPDEITMVSVLSACTGLG 129
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+ T +++ Y G +D AR+ F MP +D++ W AMIDGY + R EAL LF
Sbjct: 191 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 250
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M S + PDE I+ L+A MYCK
Sbjct: 251 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 310
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG +E A V + KD W AMI G A+ + F +R P ++T++G+
Sbjct: 311 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 370
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 371 LNACSHSG 378
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A F + ++D V+W AMI+GY R+AL +F ++++ +
Sbjct: 302 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 361
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
P + T + +L A + G V++ + + M + + + ++G A I +
Sbjct: 362 PTDITFIGLLNACSH--SGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEA 419
Query: 121 FP-----TIRPDEVTYVGVLSACTHNGN 143
F TI PD V +V +L+AC + N
Sbjct: 420 FHLVQSMTIAPDTVMWVSLLAACRLHKN 447
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+ T +++ Y G +D AR+ F MP +D++ W AMIDGY + R EAL LF
Sbjct: 190 MPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLF 249
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M S + PDE I+ L+A MYCK
Sbjct: 250 RWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCK 309
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG +E A V + KD W AMI G A+ + F +R P ++T++G+
Sbjct: 310 CGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGL 369
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 370 LNACSHSG 377
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A F + ++D V+W AMI+GY R+AL +F ++++ +
Sbjct: 301 TALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLW 360
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
P + T + +L A + G V++ + + M + + + ++G A I +
Sbjct: 361 PTDITFIGLLNACSH--SGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEA 418
Query: 121 FP-----TIRPDEVTYVGVLSACTHNGN 143
F TI PD V +V +L+AC + N
Sbjct: 419 FHLVQSMTIAPDTVMWVSLLAACRLHKN 446
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 47/186 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV + T ++S Y G+++ A + F ++P+R V WTA+ GY R REA+ LF +
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 63 MQTSNIRPDEFTIVRILTA---------------YM------------------YCKCGD 89
M ++PD + IV++L+A YM Y KCG
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLS 136
+EKA+ V M+ KD TW+ MI G A S+ FP ++PD+ + VG LS
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYA-SNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 137 ACTHNG 142
+C G
Sbjct: 322 SCASLG 327
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y G+++ AR F M E+D V W+ MI GY + +E + LF +M N++
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD+F+IV L++ MY KCG + + V
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 97 LRKMLRKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSACTHNG 142
++M KD A I GLA + F I PD T++G+L C H G
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428
>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
Length = 413
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ Y+ G+VD A + F +MP+ D + WTAMI+G+++ EAL F
Sbjct: 81 MEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKGFHEEALVWF 140
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 141 REMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNNSLIDLYCRC 200
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ V KM ++ +W ++IVG A + PD VT+ G L
Sbjct: 201 GCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTFTGAL 260
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 261 TACSHVG 267
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ AR+ F +M +R V W ++I G E+L F +MQ PD T
Sbjct: 197 YCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNPDAVTF 256
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI---------SDPFP---- 122
LTA + G VE+ + + M R K + G + D
Sbjct: 257 TGALTACSH--VGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKLVQS 314
Query: 123 -TIRPDEVTYVGVLSACTHNGNET 145
+++P+EV +L+AC +GN T
Sbjct: 315 MSMKPNEVVIGSLLAACRTHGNNT 338
>gi|255550516|ref|XP_002516308.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544538|gb|EEF46055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 599
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V Y ++D A + F +MP ++ V WT++I G+ + +AL LF
Sbjct: 160 MFERDVVSWTSMVDAYARASRMDDAFRLFMEMPVKNTVSWTSLIAGFAKNGHSYKALELF 219
Query: 61 PEMQTSNIRPDEFTIVRILTAY------------------------------------MY 84
+MQ N+ P FT V +L A MY
Sbjct: 220 LQMQEENVLPSAFTFVTVLGACADLALIERGKQIHGHIIRSSGRTDLFNMYVYNALIDMY 279
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYV 132
CKCGD++ ++ + M KD +W ++I GLA + R P+ VT+
Sbjct: 280 CKCGDMKSSKSLFEGMSEKDIVSWNSLITGLAQNGHAEESLDLFRKMVEGNRLPNHVTFS 339
Query: 133 GVLSACTHNG 142
GVLSAC+H G
Sbjct: 340 GVLSACSHTG 349
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K++ SW ++ GY G D AR F +MPE + + + ++I G L + R + +
Sbjct: 71 KNIHSWNTMIGGYARVGLFDNARDLFDKMPEPNLISYNSLISGSLDLLRQVHGAAILIGL 130
Query: 64 QTSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
EF ++ + A + Y KCG + + +M +D +WT+M+ A
Sbjct: 131 --------EFNVI-VYNALIDSYGKCGQHNTSYCIFSRMFERDVVSWTSMVDAYA 176
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ ++ Y G + A + F ++P RD V WT ++ GY++ N+F++AL F +M
Sbjct: 243 DGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDML 302
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ N+ P++FT+ +L+A MY KCG ++
Sbjct: 303 SDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGSID 362
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPT-----------IRPDEVTYVGVLSACT 139
+A RV M K+ +TWT +I GLA+ D I+P+EVT+VGVL+AC+
Sbjct: 363 EALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACS 422
Query: 140 HNG 142
H G
Sbjct: 423 HGG 425
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ + N G V+ ARQ F + P +D V WTA+I+GY++ + EAL F +M+
Sbjct: 141 DLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMR 200
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
+ D T+ IL A MY KCG
Sbjct: 201 LRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHC 260
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSAC 138
E A +V ++ +D WT ++ G S+ F + P++ T VLSAC
Sbjct: 261 EDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSAC 320
Query: 139 THNG 142
G
Sbjct: 321 AQMG 324
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N +V T +V Y G +D A + F MP ++ WT +I+G AL +F
Sbjct: 342 NMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCC 401
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
M S I+P+E T V +L A + G VE+ +R+ M
Sbjct: 402 MLKSGIQPNEVTFVGVLAACSH--GGFVEEGKRLFELM 437
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 47/186 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV + T ++S Y G+++ A + F ++PER V WTA+ GY + REA+ LF +
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKK 202
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M +RPD + IV++L+A +Y KCG
Sbjct: 203 MVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLS 136
+EKA+ V M KD TW+ MI G A S+ FP ++PD+ + VG LS
Sbjct: 263 MEKARSVFDSMGEKDIVTWSTMIQGYA-SNSFPKEGIEFFLQMLQENLKPDQFSIVGFLS 321
Query: 137 ACTHNG 142
+C G
Sbjct: 322 SCASLG 327
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y G+++ AR F M E+D V W+ MI GY + +E + F +M N++
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLK 310
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD+F+IV L++ MY KCG + + V
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 97 LRKMLRKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSACTHNG 142
++M KD A I GLA + F I PD T++G+L C H G
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/181 (28%), Positives = 89/181 (49%), Gaps = 45/181 (24%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
+SWT ++SGY G V+ AR F + P +D +W ++I GY++ N F+E L +F MQ++
Sbjct: 172 VSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQST 231
Query: 67 NIRPDEFTIVRILTAY---------------------------------MYCKCGDVEKA 93
+ PDE +V IL A MY KCG ++ A
Sbjct: 232 GLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIA 291
Query: 94 QRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHN 141
+++ M ++D W AMI G+A++ ++PD++T++ + +AC+++
Sbjct: 292 KKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYS 351
Query: 142 G 142
G
Sbjct: 352 G 352
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G +DIA++ F M +RD + W AMI G AL LF EM+ + ++
Sbjct: 276 TGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVK 335
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD+ T + I TA Y G +A R+L M
Sbjct: 336 PDDITFIAIFTACSY--SGMAHEAIRLLNSM 364
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 53/152 (34%), Gaps = 55/152 (36%)
Query: 9 WTDIVSG------YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
W DI G Y + G V AR F +MP V WT MI GY +V
Sbjct: 137 WFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKV------------ 184
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
GDVE A+ + + KD+ W ++I G ++ F
Sbjct: 185 -------------------------GDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFK 219
Query: 123 T------------IRPDEVTYVGVLSACTHNG 142
+ PDE V +L AC H G
Sbjct: 220 EGLQMFRLMQSTGLEPDEAILVSILCACAHLG 251
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y G + AR+ F P+RD V W AMI GY+R ++A+ LF +M
Sbjct: 209 KDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQM 268
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 269 QAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCG 328
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLS 136
+ A V M K+ TW ++I GLA+ D F ++PDE+T+V VL
Sbjct: 329 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLV 388
Query: 137 ACTHNG 142
AC+H G
Sbjct: 389 ACSHGG 394
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 87/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV++W +V Y G A ++F +MP +++ V W M+ + R EAL LF EM
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 246
Query: 64 QTSNIRPDEFTIV---------------RILTAYM------------------YCKCGDV 90
Q + +RPD+ T V R L AYM Y KCG V
Sbjct: 247 QAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAV 306
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSAC 138
++A V M R+D +T+T+MI+GLA+ D + P+EVT +GVL+AC
Sbjct: 307 DQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTAC 366
Query: 139 THNG 142
H G
Sbjct: 367 CHAG 370
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 69/179 (38%), Gaps = 48/179 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEM------- 63
+V Y+ RG++ AR P RD V TAM+ G+ R EA+ LF M
Sbjct: 91 LVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAVVLFFAMADDRCVA 150
Query: 64 ----------------------QTSNIRPDEFTIVRILTAY-----MYCKCGDVEKAQRV 96
+ ++ R E + + A+ MY KCGD A R
Sbjct: 151 IDAVAAAAAFSACAQIGDLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRW 210
Query: 97 LRKM-LRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
R+M ++K+ +W M+ A + +RPD+ T+V L AC G
Sbjct: 211 FRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLG 269
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G VD A + F M RD +T+MI G R +AL+LF MQ + + P+E T+
Sbjct: 300 YAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTL 359
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
+ +LTA C G VE+ + L M
Sbjct: 360 LGVLTA--CCHAGLVEEGLQQLNAM 382
>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 517
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 48/195 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW ++ N G + AR F MP+++ + W MI GYL + EA+ LF EM
Sbjct: 180 KDIVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEM 239
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ N D T+ +L+A MY KCG +
Sbjct: 240 KAGNHEADHLTVTLVLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTI 299
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPT--IRPDEVTYVGVLSAC 138
+++ V K KD + W A+I GLA+ D +RPDE+T++G+LSAC
Sbjct: 300 QRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSAC 359
Query: 139 THNGNETFVINSCNL 153
+H + V C L
Sbjct: 360 SH---RSLVQEGCRL 371
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 20/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+ W +++ Y + GQ+D A + F MP +D + MI GY ++ + A ++F
Sbjct: 115 MGVKDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIF 174
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYC-KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS- 118
+ + IV + + C GD+ A+ + M +K+ TW MI G +
Sbjct: 175 DRIHAKD-------IVSWNSMILACTNVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQ 227
Query: 119 ------DPFPTIR-----PDEVTYVGVLSACTHNG 142
D F ++ D +T VLSAC H G
Sbjct: 228 LYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLG 262
>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
Length = 577
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW ++ GY+ G+++ A+ F MP RD V W MIDGY ++ +A TLF
Sbjct: 219 MPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLF 278
Query: 61 PEM--------------------------------QTSNIRPDEFTIVRILTAY------ 82
+M + S++ PDE T+V +L+A
Sbjct: 279 DQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRL 338
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A RV + K W AMI GL
Sbjct: 339 TKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGL 398
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
A+ F +I+PD +T+VGVL+AC+H+G
Sbjct: 399 AVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSG 437
Score = 68.6 bits (166), Expect = 8e-10, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +++I+W ++ GY R V++A + F +MPE+D + W +MI GY++ R +A LF
Sbjct: 188 EKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLF 247
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
++ P + + Y K G V +A+ + +M +D + +M+ G +
Sbjct: 248 ------DVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRY 301
Query: 119 -----------DPFPTIRPDEVTYVGVLSACTHNGNETFVIN 149
+ + PDE T V VLSA G T I+
Sbjct: 302 HIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAID 343
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL-RVNRFREAL 57
M +D +S+ ++ GY+ G V+ A + F MP +R+ + W +MI GY R + A
Sbjct: 154 MPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVAS 213
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
LF EM P++ I Y K G +E A+ + M R+D TW MI G
Sbjct: 214 KLFDEM------PEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDG 264
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 8 SWTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+W+D+ + Y+ G + ARQ F +MP+RD V + +MIDGY++ A LF
Sbjct: 124 TWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFD 183
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M + + T ++ Y + V A ++ +M KD +W +MI G
Sbjct: 184 LMPRE--KRNLITWNSMIGGYAQ-RADGVNVASKLFDEMPEKDLISWNSMIGG 233
Score = 36.6 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 18/145 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F + + W AMI G A + +++ +I+PD
Sbjct: 363 LIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPD 422
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAIS-------- 118
T V +L A + G V++ M RK K + M+ LA S
Sbjct: 423 HITFVGVLNACSHS--GLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKN 480
Query: 119 --DPFPTIRPDEVTYVGVLSACTHN 141
+ P I P++V + L+AC+H+
Sbjct: 481 LIEEMP-IEPNDVIWRTFLNACSHH 504
>gi|255539647|ref|XP_002510888.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550003|gb|EEF51490.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M N+DV+SW ++ GY+ G +D + F +M R+ + W ++I G+++ R +EAL
Sbjct: 169 MSNRDVVSWNSMIIGYLRSGDLDQSLNLFRKMKINRNVITWNSIITGFVQGGRPKEALEF 228
Query: 60 FPEMQ--------TSNIRPDEFTIVRILTAY----------------------------- 82
F EMQ + +RPD+ TI +L+A
Sbjct: 229 FHEMQCLRDDDGINNKVRPDKITIASVLSACAHLGAIDHGKWVHSYLRRSGLECDMVIGT 288
Query: 83 ----MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRP 126
MY KCG +++A V R+M KD WTAMI A++ D F ++P
Sbjct: 289 ALVDMYGKCGCLQRAYEVFREMSEKDTLAWTAMISVFALNGFGKEAFDMFNEMEAGGVKP 348
Query: 127 DEVTYVGVLSACTHNG 142
+ VT+VG+LSAC H+G
Sbjct: 349 NLVTFVGLLSACAHSG 364
>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D I+WT ++ GY+ G V A F MPE+D V WT MI G++R F EA LF
Sbjct: 328 MPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLF 387
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM T +RP T + A MY KC
Sbjct: 388 SEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSLISMYAKC 447
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G++ A R+ +M+ D +W +MI+G + + F + P+ VT++GVL
Sbjct: 448 GEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVL 507
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 508 SACSHAG 514
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 6/115 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SW ++ G I G ++ AR F + P ++ W MI GY R EA LF
Sbjct: 98 MPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALF 157
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
EM+ N+ T +++ YC+ G+VE+ + R M +++ +WTAMI G
Sbjct: 158 DEMEDRNV----ITWTSMVSG--YCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGF 206
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
++ WT ++S Y G VD AR F MPER+ V + A++ G L+ R EA+ LF EM
Sbjct: 10 IVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPE 69
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEK---AQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
N+ + M C D K A+ + +M ++ +W AMIVGL +
Sbjct: 70 RNV---------VSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLE 120
Query: 123 TIR--------PDEVTYVGVLSACTHNG 142
R + ++ G+++ NG
Sbjct: 121 AARMVFDESPVKNAASWNGMIAGYAENG 148
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +S+ ++SG + G++ A + F +MPER+ V WT+M+ G + EA +LF
Sbjct: 36 MPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVVSWTSMLCGLADAGKICEAKSLF 95
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
EM N+ IV ++ + GD+E A+ V + K+ +W MI G A
Sbjct: 96 EEMPDRNVVSWNAMIVGLI------RNGDLEAARMVFDESPVKNAASWNGMIAGYA 145
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++VI+WT +VSGY G+V+ F MP+R+ V WTAMI G+ + +AL LF
Sbjct: 160 MEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLF 219
Query: 61 PEMQ-TSNIRPDEFTIVRILTA 81
EM+ ++I P+ T + + A
Sbjct: 220 LEMKRGADITPNIETFISLAYA 241
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 42/121 (34%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++GYI G +D A+ F MP RD + WT+MIDGYL + EA +LF
Sbjct: 308 MINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLF----------- 356
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTY 131
+Y M KD WT MI G ++ F E TY
Sbjct: 357 -----------LY---------------MPEKDAVAWTTMISGHVRNELFA-----EATY 385
Query: 132 V 132
+
Sbjct: 386 L 386
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 44/187 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +++ Y G+++ AR+ F + P +D V W AM+ GY+ N +EAL LF
Sbjct: 199 MPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELF 258
Query: 61 PEMQTSNIRPDEFTIVRILTAY--------------------------------MYCKCG 88
EM PDE T++ +L+A MY KCG
Sbjct: 259 DEMCEVGECPDEVTMLSLLSACADLGDXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCG 318
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTIR--------PDEVTYVGVLS 136
++ K V + KD +W ++I GLA + R PDE+T+VGVL+
Sbjct: 319 NIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLA 378
Query: 137 ACTHNGN 143
AC+H GN
Sbjct: 379 ACSHTGN 385
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + +A F + D V W+A+I GY + A LF EM + D + ++
Sbjct: 156 GDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMP----KRDLVSWNVMI 211
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPTIR--PD 127
TAY K G++E A+R+ + KD +W AM+ G L + D + PD
Sbjct: 212 TAYT--KHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGECPD 269
Query: 128 EVTYVGVLSACTHNGN 143
EVT + +LSAC G+
Sbjct: 270 EVTMLSLLSACADLGD 285
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 33/125 (26%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A Q FAQ+P+ D +W I G + + A+ L+ +M +++PD FT +L A
Sbjct: 60 AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
+ KCGD++ A + + D W+A+
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSAL 179
Query: 112 IVGLA 116
I G A
Sbjct: 180 IAGYA 184
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + F + ++D V W ++I G E+L LF EMQ + + PD
Sbjct: 310 LVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPD 369
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI---------SDPFP 122
E T V +L A + G+V++ R M K K G + + F
Sbjct: 370 EITFVGVLAACSH--TGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFD 427
Query: 123 -----TIRPDEVTYVGVLSACTHNGN 143
I P+ + + +L AC +G+
Sbjct: 428 FIASMKIEPNAIVWRSLLGACKVHGD 453
>gi|255564351|ref|XP_002523172.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537579|gb|EEF39203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +S +++GY+ +G +D+A F Q+ ++D VLW M+ GY++ R +AL LF +M
Sbjct: 254 KDAVSHAILINGYVEKGLIDLASDIFYQIFDKDLVLWNVMLHGYIKAKRPIDALELFKKM 313
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ PDE T+V IL A MY KCG
Sbjct: 314 DNEGLIPDENTMVGILAACASLSDLQYGRVVHMFINRNDIKQDIFVKTALIDMYFKCGSP 373
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSAC 138
E+A KM KD FTWTA+I GLA + + F I+P+E T+V L++C
Sbjct: 374 EEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQMEEQGIQPNEATFVSALTSC 433
Query: 139 THNG 142
H+G
Sbjct: 434 RHSG 437
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ T ++ Y G + A F +M +D WTA+I+G AL LF +M
Sbjct: 355 QDIFVKTALIDMYFKCGSPEEALVTFYKMEYKDVFTWTAVIEGLANNGYGNVALNLFKQM 414
Query: 64 QTSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLR----KDKFTWTAMIVG---- 114
+ I+P+E T V LT+ C+ G V++ ++ RKM+ + +F ++
Sbjct: 415 EEQGIQPNEATFVSALTS---CRHSGLVKEGCQMFRKMVEVYKLQPRFEHFGCLIDVLSR 471
Query: 115 ---LAISDPF-PTIRPDE--VTYVGVLSAC 138
LA + F +RP+E Y VLSAC
Sbjct: 472 AGLLAQAYEFVKLLRPEERLAAYKIVLSAC 501
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLW-TAMIDGYLRVNRFREALTLFP 61
+ D+ ++ Y + Q++ AR F +M ERD W T M Y N + + LF
Sbjct: 116 DSDIYVQNALLHFYGSIKQLNYARLLFDKMYERDITSWNTFMGASYASSNSVIDLMDLFK 175
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGD 89
+ + + D+ T+V + +A+ +C +
Sbjct: 176 RLISEGVGADKITLVILFSAFAQAQCDE 203
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 49/189 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S T +++GY +RG AR+ F ++ ERD V W AMI GY+ R+ EAL LF E
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKE 186
Query: 63 MQTSNIRPDEFTIVRILTAY-------------------------------------MYC 85
M +N+RPDE T+V +++A +Y
Sbjct: 187 MMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYS 246
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP--------TIR----PDEVTYVG 133
KCGDVE A + + KD +W +I G ++ + +R P++VT +
Sbjct: 247 KCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLS 306
Query: 134 VLSACTHNG 142
VL AC H G
Sbjct: 307 VLPACAHLG 315
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G V+ A F + +D V W +I GY N ++EAL LF EM S P+
Sbjct: 241 LIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPN 300
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ +L A MY KCGD+E A +V
Sbjct: 301 DVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQV 360
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML + +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 361 FNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSG 418
Score = 55.5 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M R W AMI G+ R A LF M+ + +
Sbjct: 342 TSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVE 401
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT- 123
PD+ T V +L+A + G ++ +++ + M + T + MI L S F
Sbjct: 402 PDDITFVGLLSACSH--SGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEA 459
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 460 EEMIHTMPMEPDGVIWCSLLKACKKHGN 487
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW +++GY+ G + A++ F QMPER V W +MI GY R +F +AL LF
Sbjct: 237 MPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLF 296
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +I P+ TI+ ++A MY KC
Sbjct: 297 EVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKC 356
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G V+ A RV R + +K WT++IVGL + ++P +T++GVL
Sbjct: 357 GSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVL 416
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 417 NACSHAG 423
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++KDV+SW ++ GY G++++A + F +MPE+D WT +IDG + + A +F
Sbjct: 175 MEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVF 234
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N + ++ YM K GD A+ + +M + TW +MI G +
Sbjct: 235 DRMPIRN----SVSWNAMINGYM--KAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQ 288
Query: 121 FPT------------IRPDEVTYVGVLSACT 139
F I P+ T +G +SA +
Sbjct: 289 FTKALKLFEVMLREDISPNYTTILGAVSAAS 319
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + +VS Y G++++ R+ F +M ++D V W ++IDGY R AL +F EM
Sbjct: 148 DKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMP 207
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
D F+ ++ K G +E A+ V +M ++ +W AMI G
Sbjct: 208 EK----DSFSWTILIDG--LSKSGKLEAARDVFDRMPIRNSVSWNAMING 251
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A F + E V W +I Y+ R +A+ LF ++ + PD FT+ +L
Sbjct: 68 AHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKL-LCDFVPDSFTLPCVLKGCAR 126
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY KCG++E ++V +M KD +W ++
Sbjct: 127 LGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSL 186
Query: 112 IVGLA 116
I G A
Sbjct: 187 IDGYA 191
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 84/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+ ++W ++SGY G V ARQ F +MP RD W+AMI Y+ +R AL LF
Sbjct: 116 MPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALLLF 175
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
+M + I PD+ IL MY
Sbjct: 176 QDMIINGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLVDMYA 235
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTIR-----PDEVTYVG 133
KCG ++ A ++ M ++ TWTA+I GLA F T+R P+E T+ G
Sbjct: 236 KCGFLKYACQIFNLMSERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPNEFTFTG 295
Query: 134 VLSACTHNG 142
VLSAC H G
Sbjct: 296 VLSACVHAG 304
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 50/146 (34%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y+ +AR F +MP ++ V W MI GY
Sbjct: 95 TSLLHSYVLH-SFQLARLVFDEMPHKNSVTWNTMISGY---------------------- 131
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-----------LAIS 118
K GDV A+++ +M +D +W+AMI L
Sbjct: 132 ---------------SKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALLLFQ 176
Query: 119 DPFPT-IRPDEVTYVGVLSACTHNGN 143
D I PD++ +L+ C H G+
Sbjct: 177 DMIINGINPDQMAAGSILNGCAHMGS 202
>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
Length = 612
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/219 (29%), Positives = 93/219 (42%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW ++ GY+ G+++ A+ F MP RD V W MIDGY ++ EA TLF
Sbjct: 254 MPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLF 313
Query: 61 PEM--------------------------------QTSNIRPDEFTIVRILTAY------ 82
+M + S++ PDE ++V +L+A
Sbjct: 314 DQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRL 373
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A RV + K W AMI GL
Sbjct: 374 SKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGL 433
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
A+ F +I+PD +T+VGVL+AC+H+G
Sbjct: 434 AVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSG 472
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +++I+W ++ GY R V++A + F +MPE+D + W +MI GY++ R +A LF
Sbjct: 223 EKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLF 282
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
++ P + + Y K G V +A+ + +M +D + +M+ G +
Sbjct: 283 ------DVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRY 336
Query: 119 -----------DPFPTIRPDEVTYVGVLSACTHNGNETFVIN 149
+ + PDE + V VLSA G + I+
Sbjct: 337 HMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAID 378
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYL-RVNRFREAL 57
M +D +S+ ++ GY+ G V+ A + F MP +R+ + W +MI GY R + A
Sbjct: 189 MPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAA 248
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
LF EM P++ I Y K G +E A+ + M R+D TW MI G
Sbjct: 249 KLFDEM------PEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDG 299
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 8 SWTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+W+D+ + YI G + ARQ F +MP+RD V + +MIDGYL+ A LF
Sbjct: 159 TWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFG 218
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M + + T ++ Y + V A ++ +M KD +W +MI G
Sbjct: 219 LMPRE--KRNLITWNSMIGGYAQ-RADGVNVAAKLFDEMPEKDLISWNSMIGG 268
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F + + W AMI G A + +++ +I+PD
Sbjct: 398 LIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPD 457
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP---- 122
T V +L A + G V++ M RK K + M+ LA S
Sbjct: 458 HITFVGVLNACSHS--GLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKN 515
Query: 123 -----TIRPDEVTYVGVLSACTHN 141
I P++V + L+AC+H+
Sbjct: 516 LIEGMPIEPNDVIWRTFLTACSHH 539
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W ++ + G ++ A + F +MP RD V W ++I GY ++ R+ +AL +F
Sbjct: 217 MPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVF 276
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + P E T+V +L A MY KC
Sbjct: 277 REMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKC 336
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR--PDEVTYVGVLSAC 138
G +E A+++ M +D W AMIVG ++ + F +R PD VT++GVL AC
Sbjct: 337 GSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMRVEPDHVTFLGVLIAC 396
Query: 139 THNG 142
+H G
Sbjct: 397 SHGG 400
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G +++ARQ F M RD W AMI G+ R+AL LF M+ + PD
Sbjct: 329 LVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELFDAMR---VEPD 385
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104
T + +L A C G + RV + + +D
Sbjct: 386 HVTFLGVLIA---CSHGGLVDEGRVYFRSMTED 415
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 99.8 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY +RG ++ A + F ++P +D V W A I GY ++EAL LF +
Sbjct: 166 HRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKK 225
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +L+A +Y KCG+
Sbjct: 226 MMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGE 285
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A + + + KD +W +I G + + +P++VT + +LSA
Sbjct: 286 LETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSA 345
Query: 138 CTHNG 142
C H G
Sbjct: 346 CAHLG 350
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F + +D + W +I GY +N ++EAL LF +M S +P+
Sbjct: 276 LIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPN 335
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL+A MY KCGD+E AQ+V
Sbjct: 336 DVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQV 395
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML + +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 396 FDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSG 453
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A+Q F M R W AMI G+ R A +F M+ + I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M R K + MI S F
Sbjct: 437 PDDITFVGLLSACSH--SGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEA 494
Query: 123 -------TIRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 495 EKMINTMEMEPDGVIWCSLLKACKMHGN 522
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W ++ + G +D A + F++MPERD V W ++I GY ++ ++ +AL +F
Sbjct: 204 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 263
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + I+P E T+V +L A MY KC
Sbjct: 264 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 323
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSAC 138
G ++ A++V +M +D W AMIVG ++ + F + I P+ VT++GVL+AC
Sbjct: 324 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMKIEPNPVTFLGVLTAC 383
Query: 139 THNG 142
+H G
Sbjct: 384 SHGG 387
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W ++ + G +D A + F++MPERD V W ++I GY ++ ++ +AL +F
Sbjct: 190 MPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIF 249
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + I+P E T+V +L A MY KC
Sbjct: 250 QEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKC 309
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSAC 138
G ++ A++V +M +D W AMIVG ++ + F + I P+ VT++GVL+AC
Sbjct: 310 GMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMKIEPNPVTFLGVLTAC 369
Query: 139 THNG 142
+H G
Sbjct: 370 SHGG 373
>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09410-like [Glycine max]
Length = 669
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ +WT +++ ++ G +D AR+ F Q+PE++ W MIDGY R + EAL LF
Sbjct: 308 MPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNLF 367
Query: 61 PEMQTSNIRPDEFTIVRILTA------------------------------YMYCKCGDV 90
M S RP+E T+ ++T+ +Y K GD+
Sbjct: 368 VLMLRSCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTNALITLYSKSGDL 427
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSAC 138
A+ V ++ KD +WTAMIV + I+PDEVT+VG+LSAC
Sbjct: 428 CSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPDEVTFVGLLSAC 487
Query: 139 THNG 142
+H G
Sbjct: 488 SHVG 491
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT +V G+ G +D A ++F MPE++ + WTAM+ YL F EA LF
Sbjct: 184 MPERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
EM N+R I L A V++A + M ++ +WTAM+ GLA
Sbjct: 244 LEMPERNVRSWNIMISGCLRA------NRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKM 297
Query: 117 --ISDPFPTIRP--DEVTYVGVLSACTHNG 142
I+ + + P D + +++AC G
Sbjct: 298 IGIARKYFDLMPYKDMAAWTAMITACVDEG 327
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +S+ +++ Y+ + A F +MP+R+ V +AMIDGY +V R +A +F
Sbjct: 91 MPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAESAMIDGYAKVGRLDDARKVF 150
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N F+ +++ Y CG +E+A + +M ++ +WT +++G A
Sbjct: 151 DNMTQRN----AFSWTSLISGYF--SCGKIEEALHLFDQMPERNVVSWTMVVLGFA 200
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++ + ++ GY G++D AR+ F M +R+ WT++I GY + EAL LF
Sbjct: 122 MPQRNVVAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLF 181
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M P+ + + + + G ++ A R M K+ WTAM+
Sbjct: 182 DQM------PERNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMV 227
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78
G++D AR+ F +MP+RD V + +MI YL+ EA T+F EM N+ + I
Sbjct: 78 HGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNVVAESAMIDG- 136
Query: 79 LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y K G ++ A++V M +++ F+WT++I G
Sbjct: 137 -----YAKVGRLDDARKVFDNMTQRNAFSWTSLISG 167
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + AR F Q+ +D V WTAMI Y AL +F M S I+PD
Sbjct: 417 LITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARMLVSGIKPD 476
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA-----ISD 119
E T V +L+A + G V + +R+ + + + ++ I+G A D
Sbjct: 477 EVTFVGLLSACSH--VGLVHQGRRLFDSIKGTYNLTPKAEHYSCLVDILGRAGLVDEAMD 534
Query: 120 PFPTIRP---DEVTYVGVLSACTHNGN 143
TI P DE V +L AC +G+
Sbjct: 535 VVATIPPSARDEAVLVALLGACRLHGD 561
>gi|255551991|ref|XP_002517040.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543675|gb|EEF45203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 92/183 (50%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G D A + F +MP ++ V W+A+I GY++ NRF++AL LF +M
Sbjct: 231 DVYIGSSLLDMYCKCGYCDDACKLFNEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDML 290
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+++RP++ T+ +LTA MY KCG +
Sbjct: 291 LTDVRPNQCTLSSVLTASAQLGALDRGRWVHDYIDRNSLEMNSILGTALIDMYAKCGCIS 350
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPT-----------IRPDEVTYVGVLSACT 139
+A V K+ K+ +TWTAMI GLA+ D + ++P+ VT+VG+L+AC
Sbjct: 351 EAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQPNGVTFVGILNACA 410
Query: 140 HNG 142
H G
Sbjct: 411 HGG 413
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 74/177 (41%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ + N G V A Q + P R+ V WTAMIDGY+R + + F +M++ ++ D
Sbjct: 136 LITAFSNCGCVQFAHQVLDESPHRNLVTWTAMIDGYVRNGFPVDGIKCFKKMRSMGVKID 195
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
E T+V +L A MYCKCG + A ++
Sbjct: 196 EITVVSVLCAAGMAGDVWFGRWVHGFYVESGRVKWDVYIGSSLLDMYCKCGYCDDACKLF 255
Query: 98 RKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSACTHNG 142
+M K+ W+A+I G + F +RP++ T VL+A G
Sbjct: 256 NEMPVKNIVCWSALIAGYVQCNRFKDALLLFQDMLLTDVRPNQCTLSSVLTASAQLG 312
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G + A F ++ ++ WTAMI+G +L LF M ++ ++
Sbjct: 337 TALIDMYAKCGCISEAYVVFNKLHIKNVYTWTAMINGLAMHGDALSSLNLFSHMISNGVQ 396
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
P+ T V IL A C G + R L M++
Sbjct: 397 PNGVTFVGILNA---CAHGGLVHIGRGLFDMMKH 427
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
W I+SG+ Q + Y+ M D + ++ Y ++ R+ ++ +
Sbjct: 64 WNTIISGFSISFQPQKSLLYYTIMRRIGILPDNQTYNLLLKSYPQLEN-RKPFDIYAHIV 122
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT- 123
+ D ++TA+ C C V+ A +VL + ++ TWTAMI G + + FP
Sbjct: 123 KYGLDFDNSVTNSLITAFSNCGC--VQFAHQVLDESPHRNLVTWTAMIDGY-VRNGFPVD 179
Query: 124 ------------IRPDEVTYVGVLSACTHNGNETF 146
++ DE+T V VL A G+ F
Sbjct: 180 GIKCFKKMRSMGVKIDEITVVSVLCAAGMAGDVWF 214
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+ ++W ++ GY+ +G++D A + F +MPER + WTAMI+G+++ EAL F
Sbjct: 131 MEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEEALVWF 190
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ+S + PD I+ +L A ++C+C
Sbjct: 191 REMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRC 250
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE AQ V M ++ +W ++IV + + +P+ VT+ G L
Sbjct: 251 GCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGAL 310
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 311 TACSHVG 317
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 57/154 (37%), Gaps = 51/154 (33%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ T I+ Y G+V AR F M ++ + W MIDGY+R
Sbjct: 105 VMVGTAIIGMYSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRK--------------- 149
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF---- 121
G ++ A ++ +M + +WTAMI G + F
Sbjct: 150 ----------------------GKIDDAYKLFDEMPERGLISWTAMINGF-VKKGFHEEA 186
Query: 122 ---------PTIRPDEVTYVGVLSACTHNGNETF 146
+ PD V + VL+ACT+ G +F
Sbjct: 187 LVWFREMQSSGVEPDYVAIIAVLAACTNLGALSF 220
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V++A+ F M +R V W ++I + E+L F MQ +P+ T L
Sbjct: 251 GCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKPNAVTFTGAL 310
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV-GLAISDPFPTI 124
TA + G VE+ R + M ++ D ++ + L + P +
Sbjct: 311 TACSHV--GLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMP-M 367
Query: 125 RPDEVTYVGVLSACTHNGNETFV 147
+P+EV +L+AC +GN T +
Sbjct: 368 KPNEVVIGSLLAACRTHGNNTVL 390
>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 515
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKDV+SW +++GY N G ++ + F +MPER+ W +I GY F E L+ F
Sbjct: 287 MPNKDVMSWNTLLNGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSF 346
Query: 61 PEMQTSNIR-PDEFTIVRILTAY---------------------------------MYCK 86
M I P++ T+V +L+A MY K
Sbjct: 347 KRMLVDGIVVPNDATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAK 406
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG+VE A V + + +KD +W +I GLA+ +D +PD +T++GV
Sbjct: 407 CGNVENAIVVFKSLDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGV 466
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 467 LCACTHMG 474
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT ++ G+I ++ AR+ F P+RD VLW MI GY+ + A LF
Sbjct: 225 MIERNVVAWTSMIKGFILCNDIETARRLFELAPQRDVVLWNIMISGYIDIGDLVRAQELF 284
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M D + +L Y GD+E +R+ +M ++ F+W +I G A
Sbjct: 285 HKMPNK----DVMSWNTLLNG--YANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGC 338
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC G
Sbjct: 339 FLEVLSSFKRMLVDGIVVPNDATLVTVLSACARLG 373
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
A + F +M ER+ V WT+MI G++ N A LF + P ++ + Y
Sbjct: 218 AYRVFGEMIERNVVAWTSMIKGFILCNDIETARRLF------ELAPQRDVVLWNIMISGY 271
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
GD+ +AQ + KM KD +W ++ G A
Sbjct: 272 IDIGDLVRAQELFHKMPNKDVMSWNTLLNGYA 303
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 53/134 (39%), Gaps = 33/134 (24%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
A + F Q+PE + W AM+ GY + RE + LF +M + +I P+ F+ ++ +
Sbjct: 117 AHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVK 176
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
+Y + A RV +M+ ++ WT+M
Sbjct: 177 INAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSM 236
Query: 112 IVGLAISDPFPTIR 125
I G + + T R
Sbjct: 237 IKGFILCNDIETAR 250
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY +RG +D A++ F ++P +D V W AMI GY + R++EAL LF E
Sbjct: 141 HRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNE 200
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +++PDE T+ +L+ +Y KCG+
Sbjct: 201 MMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGE 260
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E+A + + KD +W +I G A + P++VT + +L A
Sbjct: 261 MERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPA 320
Query: 138 CTHNG 142
C H G
Sbjct: 321 CAHLG 325
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F + +D + W +I GY +N +EAL +F EM P+
Sbjct: 251 LIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPN 310
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL A MY KCG++E A +V
Sbjct: 311 DVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQV 370
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
+L K + AMI G A+ I PD++T+VG+LSAC+H G
Sbjct: 371 FDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAG 428
Score = 41.2 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F + + AMI G+ R A L M+ I
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIE 411
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + D+ +++ + M + + MI L S F
Sbjct: 412 PDDITFVGLLSACSHAGLSDL--GRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA 469
Query: 123 -------TIRPDEVTYVGVLSACTHNGN 143
T+ PD V + +L AC + N
Sbjct: 470 EELINSMTMEPDGVIWGSLLKACKIHKN 497
>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D++SW +++ GY G+VDIAR F +MPERD V + AM+ GY++ EAL +F
Sbjct: 284 MPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIF 343
Query: 61 PEMQTS-NIRPDEFTIVRILTAY---------------------------------MYCK 86
MQ+ N D T++ L+A MY K
Sbjct: 344 YGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSK 403
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFP--------TIRPDEVTYVGV 134
CG +E A V + K W A+I GLAI F + PD++T++G+
Sbjct: 404 CGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGL 463
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 464 LNACGHAG 471
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 1 MKNKDVISWTDIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
++ +++ISW ++ GY + + +A Q FA+MPERD + W +MIDG ++ R +A L
Sbjct: 221 LEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGL 280
Query: 60 FPEMQTSNIRPDEFTIVRILTAYM---YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F M +I + A M Y K G V+ A+ + +M +D + AM+ G
Sbjct: 281 FDRMPNRDI---------VSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGG 329
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 40/169 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP--EMQTSNI- 68
++S Y+ G + A Q F +MP+RD V + +MIDGY++ R A +F ++ N+
Sbjct: 168 LISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERNLI 227
Query: 69 -----------RPDEFTIVRILTAYM--------------YCKCGDVEKAQRVLRKMLRK 103
D + L A M KCG +E AQ + +M +
Sbjct: 228 SWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNR 287
Query: 104 DKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACTHNG 142
D +W MI G A + D P D V Y ++ NG
Sbjct: 288 DIVSWANMIDGYAKNGRVDIARSLFDEMP--ERDVVAYNAMMGGYVQNG 334
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW ++SGY GQ+ A+ F M ++ V WTAMI GY + + EA+ F
Sbjct: 170 MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFF 229
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ + I PDE +++ +L + MY KC
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKC 289
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G + +A ++ +M KD +W+ MI G A + F ++P+ +T++G+L
Sbjct: 290 GVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLL 349
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 350 SACSHVG 356
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A Q F QM +D + W+ MI GY A+ F EMQ + ++P+
Sbjct: 282 LIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPN 341
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLR--KMLRKD-----KFTWTAMIV----------- 113
T + +L+A C V Q LR M+R+D K ++
Sbjct: 342 GITFLGLLSA-----CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLER 396
Query: 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ I+ P ++PD + +LS+C GN
Sbjct: 397 AVEITKTMP-MKPDSKIWGSLLSSCRTPGN 425
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK 92
P V A+ID Y++ + +A +F EM ++ + +L+ Y + G ++K
Sbjct: 140 PRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDV----ISWNSLLSGY--ARLGQMKK 193
Query: 93 AQRVLRKMLRKDKFTWTAMIVG-------LAISDPF-----PTIRPDEVTYVGVLSACTH 140
A+ + ML K +WTAMI G + D F I PDE++ + VL +C
Sbjct: 194 AKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQ 253
Query: 141 NGN 143
G+
Sbjct: 254 LGS 256
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W ++++GY+ G + +AR+ F +MP RD + W+ ++ GY++ AL +F M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+RP++ +V L+A MY KCG V
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPT--IRPDEVTYVGVLSAC 138
A+ V M R+D F W AMI GLA + + F + + P VT+VGVL+ C
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390
Query: 139 THNG 142
+ +G
Sbjct: 391 SRSG 394
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G V +AR+ F M RD W AMI G R+A+ LF + + P
Sbjct: 320 LVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPT 379
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT--- 123
T V +L + G V + +R + ++ K + + M+ L + P
Sbjct: 380 NVTFVGVLNGC--SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIE 437
Query: 124 ------IRPDEVTYVGVLSACTHNG 142
I PD V + +LS+C +G
Sbjct: 438 LIEGMHIAPDPVLWGTILSSCKTHG 462
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W ++++GY+ G + +AR+ F +MP RD + W+ ++ GY++ AL +F M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+RP++ +V L+A MY KCG V
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPT--IRPDEVTYVGVLSAC 138
A+ V M R+D F W AMI GLA + + F + + P VT+VGVL+ C
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390
Query: 139 THNG 142
+ +G
Sbjct: 391 SRSG 394
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G V +AR+ F M RD W AMI G R+A+ LF + + P
Sbjct: 320 LVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPT 379
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT--- 123
T V +L + G V + +R + ++ K + + M+ L + P
Sbjct: 380 NVTFVGVLNGC--SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIE 437
Query: 124 ------IRPDEVTYVGVLSACTHNG 142
I PD V + +LS+C +G
Sbjct: 438 LIEGMHIAPDPVLWGTILSSCKTHG 462
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W ++++GY+ G + +AR+ F +MP RD + W+ ++ GY++ AL +F M
Sbjct: 211 RDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNM 270
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+RP++ +V L+A MY KCG V
Sbjct: 271 VEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCV 330
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPT--IRPDEVTYVGVLSAC 138
A+ V M R+D F W AMI GLA + + F + + P VT+VGVL+ C
Sbjct: 331 AVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGC 390
Query: 139 THNG 142
+ +G
Sbjct: 391 SRSG 394
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G V +AR+ F M RD W AMI G R+A+ LF + + P
Sbjct: 320 LVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPT 379
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT--- 123
T V +L + G V + +R + ++ K + + M+ L + P
Sbjct: 380 NVTFVGVLNGC--SRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIE 437
Query: 124 ------IRPDEVTYVGVLSACTHNG 142
I PD V + +LS+C +G
Sbjct: 438 LIEGMHIAPDPVLWGTILSSCKTHG 462
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +V+GY +RG ++ AR F ++P +D V W AMI GY+ ++EAL LF E
Sbjct: 126 HRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKE 185
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A Y KCG+
Sbjct: 186 MMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGE 245
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A + + KD +W +I G + + P++VT + +L A
Sbjct: 246 METACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHA 305
Query: 138 CTHNG 142
C H G
Sbjct: 306 CAHLG 310
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F + +D + W +I GY +N ++EAL LF EM S P+
Sbjct: 236 LIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPN 295
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL A MY KCGD+E A +V
Sbjct: 296 DVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQV 355
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML K W AMI G A+ D F +R PD++T+VG+LSAC+H G
Sbjct: 356 FNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAG 413
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M + W AMI G+ R A +F M+ + I+
Sbjct: 337 TSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIK 396
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M K T + MI L S F
Sbjct: 397 PDDITFVGLLSACSH--AGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEA 454
Query: 123 -------TIRPDEVTYVGVLSACTHNGN 143
T+ PD V + +L AC +GN
Sbjct: 455 EEMISTMTMEPDGVIWCSLLKACKMHGN 482
>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
Length = 664
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ISWT +++GY N GQ+ A F MP+RD V WT M+ G+++ F EA LF EM
Sbjct: 318 RDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEM 377
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ + P T +L A MY KCG++
Sbjct: 378 RVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEI 437
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTI--------RPDEVTYVGVLSAC 138
A + KM+ +D +W +MI+G + S+ P+ VT++G+LSAC
Sbjct: 438 GDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSAC 497
Query: 139 THNG 142
+H G
Sbjct: 498 SHAG 501
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW ++ G I GQ++ AR+ F +MP + V W MI GY +R EA LF
Sbjct: 164 MPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLF 223
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N+ T +++ Y C+ G+V++ + +KM ++ +WTAMI G A
Sbjct: 224 DGMGDRNV----VTWTSMISGY--CRAGNVQEGYCLFQKMPERNVVSWTAMIGGFA 273
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 12/115 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL-TL 59
M +++V++WT ++SGY G V F +MPER+ V WTAMI G+ ++EAL ++
Sbjct: 226 MGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALNSM 285
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Q+ N ++ Y+ + G +EKAQ + + +DK +WT+MI G
Sbjct: 286 SYNTQSCN---------SMINGYI--RIGQLEKAQSLFDTIPVRDKISWTSMING 329
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+++ ++SGY+ G++ A ++F +MPER+ V WT+++ G R EA LF
Sbjct: 102 MPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELF 161
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N+ +V ++ + G +E+A+RV +M K + +W MI G A
Sbjct: 162 NVMPERNVVSWNSMLVGLI------RSGQLEEARRVFNEMPVKSQVSWNVMIAGYA 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ WT ++S + G +D AR F MPER+ V + AM+ GY++ R +A F EM
Sbjct: 76 VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
N+ + + A G + +A+ + M ++ +W +M+VGL S R
Sbjct: 136 RNVVSWTSLLCGLANA------GRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEAR 189
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 93/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K K+ SW ++ G++ G++ A + F +MPER + WT +I+G++++ F EAL F
Sbjct: 74 LKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWF 133
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ S + PD TIV +L+A +Y +C
Sbjct: 134 RKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRC 193
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G +E A++V KM + +W ++I GLA + + F + +P++V++ G L
Sbjct: 194 GAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGAL 253
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 254 TACSHTG 260
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRPDEFT 74
Y G +++ARQ F +M ER V W ++I G L N F EAL F MQ +P++ +
Sbjct: 190 YSRCGAIELARQVFEKMGERTLVSWNSIIGG-LAANGFTEEALEHFDLMQKQGFKPNDVS 248
Query: 75 IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT----WTAMIVGL-----AISDPFPTI- 124
LTA + G V++ + M R K + IV L + D +
Sbjct: 249 FTGALTACSH--TGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQ 306
Query: 125 ----RPDEVTYVGVLSACTHNGN 143
+P+EV +L+AC G+
Sbjct: 307 NMPMKPNEVVVGSLLAACRTRGD 329
>gi|297739162|emb|CBI28813.3| unnamed protein product [Vitis vinifera]
Length = 500
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 25/155 (16%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+V Y + G ++ A F + PE D V W+ MI+GY++ +RF+E L LF +M I P
Sbjct: 213 LVQMYASCGLIESAGLVFDRTPECDDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEP 272
Query: 71 DEFTI----------VRILTAY--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+E + VR+ TA MY KCG VE+A V KM K+ W+AMI GLAI+
Sbjct: 273 NESVLVNALKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAIN 332
Query: 119 D------------PFPTIRPDEVTYVGVLSACTHN 141
++P+EVT++G+L+AC+H+
Sbjct: 333 GQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHS 367
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V+ A + F +M E++ + W+AMI+G + ++AL LF +M+ ++
Sbjct: 292 TALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVK 351
Query: 70 PDEFTIVRILTAYMYCKCGD 89
P+E T + IL A + K D
Sbjct: 352 PNEVTFIGILNACSHSKLVD 371
>gi|242072866|ref|XP_002446369.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
gi|241937552|gb|EES10697.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
Length = 474
Score = 99.4 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+S+ ++ Y+N G+V +AR+ F +MP RD W +I G + R EA+ LF M+
Sbjct: 162 DVVSYNALMHAYVNAGRVGVAREVFEEMPVRDATSWGTVIAGCAKAGRLEEAVLLFDRMR 221
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
RPD +V +L+ +Y KCG VE
Sbjct: 222 EEGFRPDSVALVAVLSCCAQLGALDKGQEVHEYIKLSRTSPNVFLCTGLVDLYAKCGCVE 281
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
+A+ V ++ FTW A+IVGLA+ I+ D VT++GVL AC+
Sbjct: 282 EAREVFEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQMLADGIQSDGVTFLGVLIACS 341
Query: 140 HNG 142
HNG
Sbjct: 342 HNG 344
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ-TSNI 68
+ +V+ Y G + ARQ F Q+ ++D W+A+I GY++ NR EAL LF E+ SN+
Sbjct: 219 SALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNM 278
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
RP+E TI+ +++A M+ KCGD++ A+R
Sbjct: 279 RPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKR 338
Query: 96 VLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
+ M KD +W +M+ GLA+ ++PDE+T++GVL+AC+H G
Sbjct: 339 IFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAG 397
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 46/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + D+ T +++ Y G + AR F +M R+ V+WT+MI GY++ + EAL L+
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLY 168
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ PDE T+ +++A MY KC
Sbjct: 169 KKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKC 228
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVTYVGV 134
GD++ A++V ++ KD + W+A+I G ++ +RP+EVT + V
Sbjct: 229 GDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAV 288
Query: 135 LSACTHNGN 143
+SAC G+
Sbjct: 289 ISACAQLGD 297
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTL 59
DV++W ++ ++N A Q + +M ER D + +++ G + F+ L
Sbjct: 42 DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
++ + D + +L MY CGD++ A+ + +M ++K WT+MI G + +
Sbjct: 102 HGQVVKYMLHSDLYIETTLLN--MYAACGDLKSARFLFERMGHRNKVVWTSMISGY-MKN 158
Query: 120 PFPT-------------IRPDEVTYVGVLSACT 139
P PDEVT ++SAC
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N ++I T I+ Y G++ IAR F +MP+R+ V W +MI+ Y + R +EAL LF +
Sbjct: 244 NSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFD 303
Query: 63 MQTSNIRPDEFTIVRILT---------------AY------------------MYCKCGD 89
M TS + PD+ T + +L+ AY MY K G+
Sbjct: 304 MWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGE 363
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR------PDEVTYVGVLS 136
+ AQ++ + +KD WT+MI GLA+ F T++ PD +TY+GVL
Sbjct: 364 LGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLF 423
Query: 137 ACTHNG 142
AC+H G
Sbjct: 424 ACSHVG 429
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 52/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y++ + + F +P+ + V WT +I GY++ N+ EAL +F +M
Sbjct: 138 DAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMS 197
Query: 65 TSNIRPDEFTIVRILTA----------------------------------------YMY 84
N+ P+E T+V L A MY
Sbjct: 198 HWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILATAILEMY 257
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVTYV 132
KCG ++ A+ + KM +++ +W +MI + L + PD+ T++
Sbjct: 258 AKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVYPDKATFL 317
Query: 133 GVLSACTH 140
VLS C H
Sbjct: 318 SVLSVCAH 325
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y G++ A++ F+ + ++D V+WT+MI+G EAL++F MQ
Sbjct: 347 DISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQ 406
Query: 65 T-SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
S++ PD T + +L A + G VE+A++ R M
Sbjct: 407 EDSSLVPDHITYIGVLFACSH--VGLVEEAKKHFRLM 441
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 64/167 (38%), Gaps = 45/167 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ A Q+ +W +MI G++ + R ++ L+ +M + PD FT +L
Sbjct: 52 GDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVL 111
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A +MY C D++ +V + + +
Sbjct: 112 KACCVIADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVV 171
Query: 107 TWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLSACTHN 141
WT +I G ++ P+ ++ P+E+T V L AC H+
Sbjct: 172 AWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHS 218
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SW ++ GY G++DIA F +M E++ + WT MI GY++ +EAL LF EMQ
Sbjct: 209 DAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQ 268
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S++ PD ++ L+A MY KCGD+
Sbjct: 269 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMG 328
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGL--------AISDPFPT----IRPDEVTYVGVLSACT 139
+A V + + RK WTA+I G AIS I+P+ +T+ VL+AC+
Sbjct: 329 EALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACS 388
Query: 140 HNG 142
+ G
Sbjct: 389 YTG 391
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F + + WTA+I GY REA++ F EMQ I+P+
Sbjct: 317 LIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T +LTA Y G VE+ + + M R
Sbjct: 377 VITFTTVLTACSY--TGLVEEGKLIFYNMER 405
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY G +++AR F +MP ++ V WT ++ GY ++A+ F
Sbjct: 69 MPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRSF 128
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + ++PD+ T++ IL + MY KC
Sbjct: 129 EQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKC 188
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G V++A V M +KD +W M+ GLA+ RPD+VT V VL
Sbjct: 189 GQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVL 248
Query: 136 SACTHNG 142
AC H G
Sbjct: 249 CACVHAG 255
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ G + G++ A + F +MP +D V W ++DGY++ +A LF
Sbjct: 7 MDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNKAFGLF 66
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
M P+ + YCK GD+E A+ + +M K+ +WT ++ G A+
Sbjct: 67 ESM------PERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGL 120
Query: 120 -----------PFPTIRPDEVTYVGVLSACTHNG 142
++PD+ T + +L++C +G
Sbjct: 121 AKDAIRSFEQMEEAGLKPDDGTVISILASCAESG 154
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y GQVD A F M ++D V W M+ G +AL LF M+ RPD
Sbjct: 181 LVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPD 240
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+ T+V +L A ++ G V++ R M R
Sbjct: 241 KVTLVAVLCACVH--AGFVDEGIRYFNNMER 269
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M NK V+SW ++ Y A + F +M + W MI+G++ + + EAL+L
Sbjct: 136 MVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSL 195
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F EMQ S ++ D+ T+ +L A MY K
Sbjct: 196 FNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAK 255
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG +E A RV ++M KD TWTA+IVGLA+ ++PD +T+VGV
Sbjct: 256 CGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGV 315
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 316 LAACSHAG 323
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ +V+ W ++ G + G + A+ F +MP R V W MI GY + F EA+ LF
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQ 259
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
EMQ+SNI P+ T+V +L A MY KCG
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCG 319
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
++KA +V + +++ TW+A+I A+ + P++V Y+G+LS
Sbjct: 320 SIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379
Query: 137 ACTHNG 142
AC+H G
Sbjct: 380 ACSHAG 385
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 2 KNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + + +V Y G +D A Q F +P+R+ + W+A+I + R +A+
Sbjct: 298 KNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAM 111
F M + + P++ + IL+A + G VE+ + M+ R + +
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSH--AGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVD 415
Query: 112 IVGLA--ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
++G A + + IR PD+V + +L AC + N
Sbjct: 416 LLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKN 454
>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 624
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V+GY G V+ AR+ F +MP R+ W+ MI+GY + N F +A+ LF
Sbjct: 180 MPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ + +E +V ++++ MY +C
Sbjct: 240 ELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++EKA RV ++ KD +W+++I GLA+ P ++T VL
Sbjct: 300 GEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVL 359
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 360 SACSHGG 366
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 25/142 (17%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV +V Y N G + A + F QMP RD V WT+M+ GY + +A +F EM
Sbjct: 153 DVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMP 212
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
N+ FT ++ Y C EKA + M R+ +
Sbjct: 213 HRNL----FTWSIMINGYAKNNC--FEKAIDLFELMKREG-------------------V 247
Query: 125 RPDEVTYVGVLSACTHNGNETF 146
+E V V+S+C H G F
Sbjct: 248 VANETVMVSVISSCAHLGALEF 269
>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
mitochondrial-like [Vitis vinifera]
Length = 743
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ISWT +++GY N GQ+ A F MP+RD V WT M+ G+++ F EA LF EM
Sbjct: 397 RDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEM 456
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ + P T +L A MY KCG++
Sbjct: 457 RVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEI 516
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTI--------RPDEVTYVGVLSAC 138
A + KM+ +D +W +MI+G + S+ P+ VT++G+LSAC
Sbjct: 517 GDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSAC 576
Query: 139 THNG 142
+H G
Sbjct: 577 SHAG 580
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW ++ G I GQ++ AR+ F +MP + V W MI GY +R EA LF
Sbjct: 164 MPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLF 223
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N+ T +++ Y C+ G+V++ + +KM ++ +WTAMI G A +
Sbjct: 224 DGMGDRNV----VTWTSMISGY--CRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGF 277
Query: 121 FPT-------------IRPDEVTYVGVLSACTHNG 142
+ ++P++ T++ + AC G
Sbjct: 278 YKEALLLFLEMKGNYDMKPNDETFISLAYACAGIG 312
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+++ ++SGY+ G++ A ++F +MPER+ V WT+++ G R EA LF
Sbjct: 102 MPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELF 161
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N+ +V ++ + G +E+A+RV +M K + +W MI G A
Sbjct: 162 NVMPERNVVSWNSMLVGLI------RSGQLEEARRVFNEMPVKSQVSWNVMIAGYA 211
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ WT ++S + G +D AR F MPER+ V + AM+ GY++ R +A F EM
Sbjct: 76 VVCWTSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE 135
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
N+ + + A G + +A+ + M ++ +W +M+VGL S R
Sbjct: 136 RNVVSWTSLLCGLANA------GRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEAR 189
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 90/186 (48%), Gaps = 46/186 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V +WT ++SG + G++D AR+ F QMP ++ V WTAMIDGY++ + EA LF
Sbjct: 184 MRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLF 243
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M Q N+RP+E+T+V ++ A MY K
Sbjct: 244 ERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSK 303
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG ++ A+ V M + TW MI L + F + PD +T+VGV
Sbjct: 304 CGYLDDARTVFDMMQVRTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAITFVGV 363
Query: 135 LSACTH 140
LSAC +
Sbjct: 364 LSACVY 369
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFPEMQTSNI 68
T ++ Y G +D AR F M R W MI L V+ +R EAL+LF EM+ +N
Sbjct: 295 TALIDMYSKCGYLDDARTVFDMMQVRTLATWNTMITS-LGVHGYRDEALSLFDEMEKANE 353
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T V +L+A +Y D+E AQ+ M
Sbjct: 354 VPDAITFVGVLSACVYMN--DLELAQKYFNLM 383
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + M++ Y + + +F +M+ N+ F +++ + CG ++ A+
Sbjct: 157 DLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNV----FAWTTVISGLV--ACGKLDTARE 210
Query: 96 VLRKMLRKDKFTWTAMIVG-LAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
+ +M K+ +WTAMI G + P +RP+E T V ++ ACT G
Sbjct: 211 LFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMG 270
Query: 143 N 143
+
Sbjct: 271 S 271
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD ++WT ++ GY + AR+ MP++D V W A+I Y + + EAL +F
Sbjct: 295 MEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVF 354
Query: 61 PEMQ-TSNIRPDEFTIVRILTA---------------------------------YMYCK 86
E+Q NI+ ++ T+V L+A +MY K
Sbjct: 355 HELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSK 414
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CGD+EKA+ V + ++D F W+AMI GLA+ D F ++P+ VT+ V
Sbjct: 415 CGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNV 474
Query: 135 LSACTHNG 142
AC+H G
Sbjct: 475 FCACSHTG 482
Score = 79.7 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 43/187 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF +M+
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +++ T+V +L+A MY KCG +E
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG- 142
A+R+ M KD TWT M+ G AIS+ + R D V + ++SA NG
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGK 346
Query: 143 -NETFVI 148
NE ++
Sbjct: 347 PNEALLV 353
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW ++SGY G V AR+ F MP +D V W AM+ Y V + E L +F
Sbjct: 202 MEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVF 261
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M S RPD FT+V +L+A MY K
Sbjct: 262 NMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSK 321
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG ++KA V R ++D TW ++I GL++ + +P+ +T++GV
Sbjct: 322 CGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 381
Query: 135 LSACTHNG 142
LSAC H G
Sbjct: 382 LSACNHVG 389
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV +++ Y G +IAR+ +MP RD V W +++ YL EA LF EM+
Sbjct: 144 DVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEME 203
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------I 117
N+ F I Y G V++A+ V M KD +W AM+ A +
Sbjct: 204 ERNVESWNFMISG------YAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEV 257
Query: 118 SDPFPTI------RPDEVTYVGVLSACTHNGN 143
+ F + RPD T V VLSAC G+
Sbjct: 258 LEVFNMMLDDSAERPDGFTLVNVLSACASLGS 289
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++D A + F +RD W ++I G ++AL +F EM +
Sbjct: 313 TALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFK 372
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+ T + +L+A + G +++A+++ M
Sbjct: 373 PNGITFIGVLSACNH--VGLLDQARKLFEMM 401
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW ++SGY GQ+ A+ F M ++ V WTAMI GY + + EA+ F
Sbjct: 170 MSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFF 229
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ + I PDE +++ +L + MY KC
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKC 289
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFPT--------IRPDEVTYVGVL 135
G + +A ++ + KD +W+ MI G A F T ++P+ +T++G+L
Sbjct: 290 GMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLL 349
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 350 SACSHVG 356
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A Q F Q +D + W+ MI GY A F EMQ + ++P+
Sbjct: 282 LIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPN 341
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLR--KMLRKD-----KFTWTAMIV----------- 113
T + +L+A C V Q+ L+ M+R+D K ++
Sbjct: 342 GITFLGLLSA-----CSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLER 396
Query: 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ I+ P ++PD + +LS+C GN
Sbjct: 397 AVEITKTMP-VKPDSKIWGSLLSSCRTKGN 425
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK 92
P V A+ID Y++ + +A +F EM ++ + +L+ Y + G ++K
Sbjct: 140 PRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDV----ISWNSLLSGY--ARLGQMKK 193
Query: 93 AQRVLRKMLRKDKFTWTAMIVG-------LAISDPF-----PTIRPDEVTYVGVLSACTH 140
A+ + M+ K +WTAMI G + D F I PDE++ + VL +C H
Sbjct: 194 AKGLFHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAH 253
Query: 141 NGN 143
G+
Sbjct: 254 LGS 256
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ +V+ W ++ G + G + A+ F +MP+R V W MI GY + F EA+ LF
Sbjct: 200 QDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQ 259
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
EMQ+SNI P+ T+V +L A MY KCG
Sbjct: 260 EMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCG 319
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
+++A +V + +++ TW+A+I A+ + P++V Y+G+LS
Sbjct: 320 SIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILS 379
Query: 137 ACTHNG 142
AC+H G
Sbjct: 380 ACSHAG 385
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 19/159 (11%)
Query: 2 KNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + + +V Y G +D A Q F +P+R+ + W+A+I + R +A+
Sbjct: 298 KNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAII 357
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAM 111
F M + + P++ + IL+A + G VE+ + M+ R + +
Sbjct: 358 HFHLMGKAGVTPNDVAYIGILSACSH--AGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVD 415
Query: 112 IVGLA--ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
++G A + + IR PD+V + +L AC + N
Sbjct: 416 LLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKN 454
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 88/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V Y G ++ A + F +P+++ V WTA+I GY+ V +FREA+ +F +
Sbjct: 146 DVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLL 205
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+ PD FTIVR+L+A MY KCG++E
Sbjct: 206 EMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNME 265
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
KA+ V M KD +W AMI G A++ D F ++PD T VGVLSAC
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACA 325
Query: 140 HNG 142
G
Sbjct: 326 RLG 328
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V T +V Y G ++ AR F MPE+D V W AMI GY +EA+ LF +M
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q N++PD +T+V +L+A +Y KCG +
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
+A V + M KD+ W A+I GLA++ I+PD T++G+L C
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425
Query: 139 THNG 142
TH G
Sbjct: 426 THAG 429
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 62/163 (38%), Gaps = 45/163 (27%)
Query: 26 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY--- 82
R F Q+ + + LW MI G + + F +A+ + M++ P+ FT +L A
Sbjct: 66 RFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARL 125
Query: 83 ------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+Y KCG +E A +V + K+ +WTA+I
Sbjct: 126 LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185
Query: 113 VGLAISDPFP------------TIRPDEVTYVGVLSACTHNGN 143
G F + PD T V VLSACT G+
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGD 228
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G + A + F M E+D V+W A+I G + + LF +++ I+
Sbjct: 353 TALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIK 412
Query: 70 PDEFTIVRILTAYMYCKC---GDVEKAQRVLRKMLR 102
PD T + +L C C G V++ +R M R
Sbjct: 413 PDGNTFIGLL-----CGCTHAGLVDEGRRYFNSMYR 443
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW ++SGY G VD AR F M E++ V W+ MI GY R ++ +A+ LF +M
Sbjct: 191 RDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQM 250
Query: 64 Q-TSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
Q + P++ T+V +L+A MY KCG
Sbjct: 251 QHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGC 310
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPF--------PTIRPDEVTYVGVLSA 137
V +A+ V +M +D +W+ +I+GLA+ ++ F + P++++++G+L+A
Sbjct: 311 VLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTA 370
Query: 138 CTHNG 142
CTH G
Sbjct: 371 CTHAG 375
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 90/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +S+T +++GY++ G VD AR+ F ++P +D V W AMI GY++ RF EAL F M
Sbjct: 191 RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRM 250
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q +++ P++ T+V +L+A MY KCG++
Sbjct: 251 QEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEI 310
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVG---LAISDPF---------PTIRPDEVTYVGVLSAC 138
A+++ M KD W MI G L++ + + P++VT++ VL AC
Sbjct: 311 GTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPAC 370
Query: 139 THNG 142
G
Sbjct: 371 ASLG 374
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 53/194 (27%), Positives = 73/194 (37%), Gaps = 86/194 (44%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++KDVI W MI GY ++ + EAL LF
Sbjct: 320 MEDKDVILW-------------------------------NTMIGGYCHLSLYEEALVLF 348
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------------------------------YM 83
M N+ P++ T + +L A M
Sbjct: 349 EVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVM 408
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDE 128
Y KCG VE A++V R M + +W AMI GLA I++ F +PD+
Sbjct: 409 YAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGF---QPDD 465
Query: 129 VTYVGVLSACTHNG 142
+T+VGVLSACT G
Sbjct: 466 ITFVGVLSACTQAG 479
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V WT I+ Y G V++A Q F M R W AMI G AL LF EM
Sbjct: 398 NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMI 457
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISD 119
+PD+ T V +L+A + G VE R M + + + MI LA S
Sbjct: 458 NEGFQPDDITFVGVLSACT--QAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSG 515
Query: 120 PFP---------TIRPDEVTYVGVLSACTHNGNETF 146
F + PD + +L+AC +G F
Sbjct: 516 KFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEF 551
>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 544
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 85/182 (46%), Gaps = 46/182 (25%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
++WT +V+G+ G V+ AR+ F +MPERD V W AMI G + EAL LF M
Sbjct: 109 VTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEE 168
Query: 67 NIRPDEFTIVRILTAY---------------------------------MYCKCGDVEKA 93
P+ T+V +L+A MY KCG VE A
Sbjct: 169 GFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELA 228
Query: 94 QRVLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYVGVLSACTH 140
V + ++ TW AMI GLA++ D F T+ PDEVT+VGVL AC+H
Sbjct: 229 LEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSH 288
Query: 141 NG 142
G
Sbjct: 289 AG 290
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 20/143 (13%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+ GY + G+V AR+ F MP RD V + +MI GY A LF + + P
Sbjct: 53 IQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERV----LAPTP 108
Query: 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT--------- 123
T ++ + C+ GDVE A+RV +M +D +W AMI G + + P
Sbjct: 109 VTWTSMVAGF--CRAGDVESARRVFEEMPERDLVSWNAMISG-CVGNRLPVEALCLFRWM 165
Query: 124 ----IRPDEVTYVGVLSACTHNG 142
P+ T V VLSACT G
Sbjct: 166 MEEGFVPNRGTVVSVLSACTGAG 188
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 45/194 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW+ ++ GY++ G+++ A+Q F MPE++ V WT +I+G+ + + A++ +
Sbjct: 222 MPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM ++P+E+TI +L+A MY KC
Sbjct: 282 FEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKC 341
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVL 135
G+++ A V M KD +WTAMI G A+ F +PDEV ++ VL
Sbjct: 342 GELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401
Query: 136 SACTHNGNETFVIN 149
+AC ++ +N
Sbjct: 402 TACLNSSEVDLGLN 415
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+V Y GQ+ A Q F + P+R ++W +I+GY R A TLF M N
Sbjct: 167 LVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERN 226
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT---- 123
T+++ Y G++ +A+++ M K+ +WT +I G + + + T
Sbjct: 227 -SGSWSTLIK-----GYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAIST 280
Query: 124 --------IRPDEVTYVGVLSACTHNG 142
++P+E T VLSAC+ +G
Sbjct: 281 YFEMLEKGLKPNEYTIAAVLSACSKSG 307
>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
Length = 614
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 279 MPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIF 338
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PDE T+V +L+A MY K
Sbjct: 339 SDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSK 398
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
CG +++A V + K W AMI GLAI +I PD +T+VGV
Sbjct: 399 CGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGV 458
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 459 LNACSHSG 466
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY V+IA + FA+MPE+D + W ++I GY++ R +A LF
Sbjct: 219 KNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHV 278
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V KA+ + +M +D + +M+ G
Sbjct: 279 MP----RRDVVTWATMIDG--YAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHM 332
Query: 115 -----LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + + PDE T V VLSA G
Sbjct: 333 EALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQ 366
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ ++ GYI G ++ AR+ F MP ++ + W +MI GY + + A
Sbjct: 183 MPQRDSVSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIAS 242
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF EM P++ I Y Y K G +E A+ + M R+D TW MI G A
Sbjct: 243 KLFAEM------PEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYA 295
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 89/186 (47%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N +VI T IV Y G + AR F +MP R+ V W +MI Y + + EAL LF +
Sbjct: 245 NFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSD 304
Query: 63 MQTSNIRPDEFTIV---------------RILTAY------------------MYCKCGD 89
M+ + PD+ T + + L AY MY K GD
Sbjct: 305 MRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGD 364
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR------PDEVTYVGVLS 136
E+AQ+V ++ +KD WT++I+GLA+ F ++ PDE+TY+GVLS
Sbjct: 365 AERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLS 424
Query: 137 ACTHNG 142
AC+H G
Sbjct: 425 ACSHVG 430
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 47/183 (25%)
Query: 4 KDVISWTDIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+DVI + +V Y + G ++ A+ F Q+ +W +MI GY EALT++
Sbjct: 35 QDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYR 94
Query: 62 EMQTSNIRPDEFTIVRILTA---------------------------------YMYCKCG 88
EM+ PD FT +L A MY CG
Sbjct: 95 EMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACG 154
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLS 136
D+E A +V + + + WT++I G +D P +R P+E+T V VL
Sbjct: 155 DMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLV 214
Query: 137 ACT 139
AC
Sbjct: 215 ACA 217
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 52/190 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + T ++ Y G ++ A + F +P+ + V WT++I G + + EA+ ++ +M+
Sbjct: 139 DVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKDME 198
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------------MY 84
++ P+E T+V +L A MY
Sbjct: 199 LWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMY 258
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMI-----VGLAIS--DPFPTIR-----PDEVTYV 132
KCG ++ A+ + KM ++ W +MI G A D F +R PD+ T++
Sbjct: 259 AKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKATFL 318
Query: 133 GVLSACTHNG 142
V+ AC H G
Sbjct: 319 CVIGACAHLG 328
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 63/187 (33%), Positives = 86/187 (45%), Gaps = 53/187 (28%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT +V G + G+VD AR+ F MPER+ V W AM+ GY++ RF +AL +F EM+
Sbjct: 170 DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTGRFLDALEVFDEMR 229
Query: 65 T-----------------------------------SNIRPDEFTIVRILTAY--MYCKC 87
S I D+ ++ TA MYCKC
Sbjct: 230 ARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDD----KLATAVVDMYCKC 285
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPF--------PTIRPDEVTYVGVL 135
G VE+A RV + + +W MI G A+ D + PD+VT V VL
Sbjct: 286 GCVEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAPDDVTLVNVL 345
Query: 136 SACTHNG 142
+AC H G
Sbjct: 346 TACAHAG 352
>gi|255581780|ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528667|gb|EEF30682.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++SW +++GY+ G +A + F +MPE++ + W +M+ GY RF+EAL LF
Sbjct: 230 MPSRNLVSWNAMINGYMKAGDFVLASELFDKMPEKNLISWNSMVAGYDLNERFKEALDLF 289
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + P+ T+V +A MY KC
Sbjct: 290 LTMLERDFTPNHATLVSTFSAVSGLASLSTGKWMHSYMVKNGFQLDGVLATSLINMYSKC 349
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++E A V + + +K WTA+IVGL + +RP +T++GVL
Sbjct: 350 GNIESALSVFQLITKKKLGHWTAIIVGLGMHGMADNALEFFHEMCRTGMRPHAITFIGVL 409
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 410 NACSHAG 416
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KD++SW ++ GY+ GQV++ + F +MPERD WT +IDG+ + + A LF
Sbjct: 168 MDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMPERDLFSWTVLIDGFSKCGKVDVARELF 227
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M + N+ + ++ YM K GD A + KM K+ +W +M+ G +++
Sbjct: 228 DKMPSRNL----VSWNAMINGYM--KAGDFVLASELFDKMPEKNLISWNSMVAGYDLNER 281
Query: 121 FPT------------IRPDEVTYVGVLSACT 139
F P+ T V SA +
Sbjct: 282 FKEALDLFLTMLERDFTPNHATLVSTFSAVS 312
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V+ Y +D A++ F M ++D V W ++IDGY++ + + LF EM
Sbjct: 146 SSLVNMYSKCKDIDSAKKVFLSMDDKDLVSWNSLIDGYVKCGQVELGMKLFEEMP----E 201
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
D F+ ++ + KCG V+ A+ + KM ++ +W AMI G
Sbjct: 202 RDLFSWTVLIDG--FSKCGKVDVARELFDKMPSRNLVSWNAMING 244
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 60/189 (31%), Positives = 87/189 (46%), Gaps = 43/189 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W ++S Y+ G+VD A +F +MP RD V WT +I G R EA+ LF
Sbjct: 215 MPERTVAAWNCMLSAYVRCGEVDAALHFFGEMPGRDAVAWTTVIAGCANAGRAAEAVDLF 274
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
M+ + ++ D T+V +LTA +MY +
Sbjct: 275 WRMRKARVKDDAVTMVALLTACAELGDLQLGRWVHARVDQDGQDQRIVLLDNALIHMYVR 334
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI--RPDEVTYVGVLSA 137
CG VE A + +M R+ +WT MI GLAI + F + RPD T + VL A
Sbjct: 335 CGAVEDAHCMFLRMPRRSTVSWTTMISGLAIHGRAEEALELFRRMEERPDGATLLAVLWA 394
Query: 138 CTHNGNETF 146
C+H+G F
Sbjct: 395 CSHSGKVDF 403
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 21/147 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G V+ A F +MP R V WT MI G R EAL LF M+ RPD
Sbjct: 328 LIHMYVRCGAVEDAHCMFLRMPRRSTVSWTTMISGLAIHGRAEEALELFRRMEE---RPD 384
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI----------VGLA 116
T++ +L A + G V+ A R M R T + M+ L
Sbjct: 385 GATLLAVLWACSH--SGKVDFAWRYFESMERLYGITPEIHHYGCMVDMLCRSRRLYEALE 442
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+++ P ++ +E + +LS C GN
Sbjct: 443 LAETMP-LQSNEAVWGALLSGCKREGN 468
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 49/146 (33%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y GQ+ A + F +MPER W M+ Y+R
Sbjct: 193 TSLLDMYATAGQLGDAGKVFDEMPERTVAAWNCMLSAYVR-------------------- 232
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF- 121
CG+V+ A +M +D WT +I G A + D F
Sbjct: 233 -----------------CGEVDAALHFFGEMPGRDAVAWTTVIAGCANAGRAAEAVDLFW 275
Query: 122 ----PTIRPDEVTYVGVLSACTHNGN 143
++ D VT V +L+AC G+
Sbjct: 276 RMRKARVKDDAVTMVALLTACAELGD 301
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ S ++ + GQ DIA++ F +M RD V W +MI GY+R RF +AL++F M
Sbjct: 133 DLFSMNLVIESLVKGGQCDIAKKVFGKMSVRDVVTWNSMIGGYVRNLRFFDALSIFRRML 192
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ + PD FT ++TA MY KCG ++
Sbjct: 193 SAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAKCGRID 252
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
+++V ++ R W AMI GLAI + PD +T++G+L+AC+
Sbjct: 253 VSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPDSITFIGILTACS 312
Query: 140 HNG 142
H G
Sbjct: 313 HCG 315
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G++D++RQ F ++ +W AMI G +A +F M+ ++ PD
Sbjct: 241 LIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATLVFSRMEMEHVLPD 300
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVL-----RKMLRKDKFTWTAMI--VGLA--ISDPFP 122
T + ILTA + CG VE+ ++ R M++ + M+ +G A + + +
Sbjct: 301 SITFIGILTACSH--CGLVEEGRKYFGMMQNRFMIQPQLEHYGTMVDLLGRAGLMEEAYA 358
Query: 123 TIR-----PDEVTYVGVLSAC 138
I+ PD V + +LSAC
Sbjct: 359 VIKEMRMEPDIVIWRALLSAC 379
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ++W +++ RG +D A +F +MP ++ WT+MI G+++ + EA+ LF
Sbjct: 71 MPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLF 130
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+++ +RP+E T+V +L A MY KC
Sbjct: 131 MKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKC 190
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +E A+RV +M + +W+AMI GLA+ ++P+ VT++G+L
Sbjct: 191 GCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLL 250
Query: 136 SACTHNG 142
AC+H G
Sbjct: 251 HACSHMG 257
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G ++ AR+ F +M ER V W+AMI G + EAL LF EM ++P+
Sbjct: 183 LIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPN 242
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +L A + G +++ +R M
Sbjct: 243 GVTFIGLLHACSH--MGLIDEGRRFFASM 269
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W ++ Y G ++ AR F +M ERD V WT MI YL+ R E LF
Sbjct: 283 DSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRH 342
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ SNI P++FT +L A +MY KCGD
Sbjct: 343 LMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGD 402
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
+E A+ V + + D F+WT+++VG A +PD + ++GVLSA
Sbjct: 403 IENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSA 462
Query: 138 CTHNG 142
C H G
Sbjct: 463 CAHAG 467
Score = 82.0 bits (201), Expect = 8e-14, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 81/186 (43%), Gaps = 50/186 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ SW ++SGY+ G + AR F +MP RD WTA+I G ++ NR EAL L+
Sbjct: 179 MVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELY 238
Query: 61 PEMQTSN------------------------------------IRPDEFTIVRILTAYMY 84
MQ + + DE +L MY
Sbjct: 239 RLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD--MY 296
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPF--PTIRPDEVTYV 132
KCG +E+A+ + KM +D +WT MI G A+ I P++ T+
Sbjct: 297 GKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFA 356
Query: 133 GVLSAC 138
GVL+AC
Sbjct: 357 GVLNAC 362
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G ++ A+ F +P+ D WT+++ GY + + +AL F + S +PD
Sbjct: 393 LVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPD 452
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT----AMIVGL-----------A 116
+ +L+A + G V+K + K T T A I+ L +
Sbjct: 453 GIAFIGVLSACAHA--GLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAES 510
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
I + P I+PD+ + +L C +GN
Sbjct: 511 IINEMP-IKPDKYIWAALLGGCRIHGN 536
Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 9/71 (12%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP--------DEVTYVGV 134
MY KCG + A++V +M+ +D +W MI G F R D ++ +
Sbjct: 162 MYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAI 221
Query: 135 LSACT-HNGNE 144
+S C HN E
Sbjct: 222 ISGCVQHNRPE 232
>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
Length = 408
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 16/154 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++SG++ G V+ A F++MP RD V W +M+ Y + + EAL LF
Sbjct: 1 MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+MQ + +IV MY KCG + A +V M KD W +I G+AI
Sbjct: 61 DQMQAVGVN----SIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGH 116
Query: 121 F------------PTIRPDEVTYVGVLSACTHNG 142
+ P+++T+V +LSAC+H G
Sbjct: 117 VKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAG 150
>gi|242049246|ref|XP_002462367.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
gi|241925744|gb|EER98888.1| hypothetical protein SORBIDRAFT_02g024490 [Sorghum bicolor]
Length = 532
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 43/185 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W +++ Y+ G+VD A ++F +MP RD V WT MI G R EA+ LF
Sbjct: 204 MLTRAVAAWNCMLAAYVRCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRAAEAVDLF 263
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
M+ + ++ D T+V +LTA +MY K
Sbjct: 264 WRMRKARVKDDTVTMVALLTACAELGDLELGRWVHARVDLEGSQWRTVLLDNALIHMYLK 323
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPTI--------RPDEVTYVGVLSA 137
CG +E A+ + M R+ +WT MI GLAI P + RPD T + VL A
Sbjct: 324 CGAIEDARCLFGMMPRRSTVSWTTMISGLAIHGHPQEALNLFHRMQDRPDGATMLAVLRA 383
Query: 138 CTHNG 142
C+H G
Sbjct: 384 CSHAG 388
Score = 52.0 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 21/147 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G ++ AR F MP R V WT MI G +EAL LF MQ RPD
Sbjct: 317 LIHMYLKCGAIEDARCLFGMMPRRSTVSWTTMISGLAIHGHPQEALNLFHRMQD---RPD 373
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM---------------LRKDKFTWTAMIVGLA 116
T++ +L A + G ++ A+ M + W + L
Sbjct: 374 GATMLAVLRACSH--AGRIDDARWYFESMEGVYGINPEIQHYGCMVDMLCRWRRLNEALE 431
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P +P+E + +LS C +GN
Sbjct: 432 LVEKMP-FQPNEGVWGAILSGCRRDGN 457
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 24 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83
+A A E +V+ T+++ Y + +A +F EM T + +L AY+
Sbjct: 166 LASGMLAPTGESGHVM-TSLVGVYAAARQLEDARKVFDEMLTRAVAAWNC----MLAAYV 220
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTY 131
+CG+V+ A R +M R+D WT MI G A + D F ++ D VT
Sbjct: 221 --RCGEVDAALRFFGEMPRRDAVAWTTMIGGCANAGRAAEAVDLFWRMRKARVKDDTVTM 278
Query: 132 VGVLSACTHNGN 143
V +L+AC G+
Sbjct: 279 VALLTACAELGD 290
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKDV+SW +++GY + G V + F +MPER+ W A+I GY R F E L+ F
Sbjct: 174 MPNKDVMSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAF 233
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M + P++ T+V +L+A MY K
Sbjct: 234 KRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAK 293
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG VE A V + M KD +W +I GLA+ + F ++ PD +T++G+
Sbjct: 294 CGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGI 353
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 354 LCACTHMG 361
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+WT +++GYI + AR+ F PERD VLW MI GY+ A LF
Sbjct: 112 MIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELF 171
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M ++ + +L Y GDV +R+ +M ++ F+W A+I G +
Sbjct: 172 DKMPNKDV----MSWNTVLNG--YASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGC 225
Query: 121 FP-------------TIRPDEVTYVGVLSACTHNG 142
F T+ P++ T V VLSAC G
Sbjct: 226 FSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 33/123 (26%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
A + F Q+PE + +W AM GY + ++ + LF +M+ ++ P+ FT IL +
Sbjct: 4 AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY G + A RV +M+ ++ WTAM
Sbjct: 64 INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAM 123
Query: 112 IVG 114
I G
Sbjct: 124 ING 126
>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
Length = 625
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 48/186 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D SW +VSGY G ++ AR+ F +MPER V W+AMID +R F EAL +F +M
Sbjct: 183 DAFSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMM 242
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
+ RPD + +L A MYCKCG
Sbjct: 243 GNGFRPDAVVLSSVLKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCG 302
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFPTIR--------PDEVTYVGVLS 136
+++A V + +D W AMI GLA++ R P+E T+V VL
Sbjct: 303 CMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLC 362
Query: 137 ACTHNG 142
ACTH G
Sbjct: 363 ACTHTG 368
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+ T +V Y G +D A F + +D VLW AMI G + AL LF M
Sbjct: 287 NVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRML 346
Query: 65 TSNIRPDEFTIVRILTAYMYCKC---GDVEKAQRVLRKM 100
P+E T V +L C C G V++ + + R M
Sbjct: 347 DMGFVPNESTFVVVL-----CACTHTGRVDEGKEIFRSM 380
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T +++ Y +V +AR F M +++ W+AMI GY RV EAL LF EMQ +++
Sbjct: 167 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 226
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
PDE T+V +++A MY KCG +E+A+
Sbjct: 227 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 286
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
V M +D W+AMIVGLAI +RP+ VT++GVLSAC H+G
Sbjct: 287 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSG 345
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T +++ Y +V +AR F M +++ W+AMI GY RV EAL LF EMQ +++
Sbjct: 170 TGLLNLYAKCEEVALARTVFDGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADV 229
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
PDE T+V +++A MY KCG +E+A+
Sbjct: 230 NPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKG 289
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
V M +D W+AMIVGLAI +RP+ VT++GVLSAC H+G
Sbjct: 290 VFDAMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNVTFIGVLSACAHSG 348
>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
Length = 597
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVI+W ++ GY G + A+ F Q+P RD V + +M+ GY++ EAL LF
Sbjct: 262 MPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELF 321
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PDE T+V +L+A MY K
Sbjct: 322 IKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSK 381
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFP--------TIRPDEVTYVGV 134
CG ++ A V + + K+ W A+I GLAI F +I+PD++T++GV
Sbjct: 382 CGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGV 441
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 442 LNACSHSG 449
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY V+IA + F++MPE+D + W +MIDGY++ R +A LF
Sbjct: 202 KNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDV 261
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS---- 118
M R D T ++ Y K G + +A+ + ++ +D + +M+ G +
Sbjct: 262 MP----RRDVITWATMIDG--YAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHM 315
Query: 119 ---------DPFPTIRPDEVTYVGVLSACTHNG 142
+ + PDE T V VLSA G
Sbjct: 316 EALELFIKMEKESHLSPDETTLVIVLSAIAQLG 348
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 34/142 (23%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + +RQ F +MP+RD V + +MIDGY++ + RE L
Sbjct: 137 WSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDL 196
Query: 60 FPEMQTSNIR-----------PDEFTIVRILTAYM--------------YCKCGDVEKAQ 94
P+ + I D I L + M Y K G +E A+
Sbjct: 197 MPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAK 256
Query: 95 RVLRKMLRKDKFTWTAMIVGLA 116
+ M R+D TW MI G A
Sbjct: 257 DLFDVMPRRDVITWATMIDGYA 278
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G D A + F +MP R+ V W A+I GY++ NR++EAL +F EM
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I P++ T+ LTA MY KCG V+
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPT-----------IRPDEVTYVGVLSACT 139
+A V K+ KD + WTAMI GLA+ D + ++P+ VT++GVLSAC
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
Query: 140 HNG 142
H G
Sbjct: 419 HGG 421
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 46/185 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +VS + + G VD +R+ F + ++D V WTA+I+G LR R EAL F EM+
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
+S + DE TIV +L A MY KCG
Sbjct: 197 SSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
+ A +V +M ++ +W A+I G + + I P++ T L+AC
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTAC 316
Query: 139 THNGN 143
G+
Sbjct: 317 AQLGS 321
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G VD A F ++P +D WTAMI+G +L LF +M S ++
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQ 404
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
P+ T + +L+A + G V++ + R M+
Sbjct: 405 PNGVTFLGVLSACAH--GGLVDEGLELFRLMI 434
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y G + AR+ F P+RD V W AMI GY+R ++A+ LF +M
Sbjct: 210 KDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQM 269
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 270 QAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCG 329
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLS 136
+ A V M K+ TW ++I GLA+ ++PDE+T+V VL+
Sbjct: 330 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLA 389
Query: 137 ACTHNG 142
AC+H G
Sbjct: 390 ACSHGG 395
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y G + AR+ F P+RD V W AMI GY+R ++A+ LF +M
Sbjct: 210 KDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQM 269
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q +PD T++ +L+A MY KCG
Sbjct: 270 QAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCG 329
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLS 136
+ A V M K+ TW ++I GLA+ ++PDE+T+V VL+
Sbjct: 330 SMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLA 389
Query: 137 ACTHNG 142
AC+H G
Sbjct: 390 ACSHGG 395
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ YI G+V+ A F + +D + W +I GY +N ++EAL LF EM S P+
Sbjct: 276 LIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 335
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
E T++ IL A MY KCGD+E AQ+V
Sbjct: 336 EVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQV 395
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML + +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 396 FDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSG 453
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T ++ GY + G + A++ F ++P +D V W A+I GY ++EAL LF E
Sbjct: 166 HRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKE 225
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N++PDE T+V +L+A +Y KCG+
Sbjct: 226 MMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + KD +W +I G + + P+EVT + +L A
Sbjct: 286 VETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPA 345
Query: 138 CTHNG 142
C H G
Sbjct: 346 CAHLG 350
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A+Q F M R W AMI G+ R A +F M+ I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M K T + MI L S F
Sbjct: 437 PDDITFVGLLSACSH--SGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEA 494
Query: 123 -------TIRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC +GN E+F N
Sbjct: 495 EEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQN 532
>gi|125524637|gb|EAY72751.1| hypothetical protein OsI_00617 [Oryza sativa Indica Group]
Length = 425
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + + SWT ++SG + GQVD AR F MPERD + WTAMIDGY++V RFR+AL F
Sbjct: 222 MQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETF 281
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
MQ +R DEFT+V ++TA
Sbjct: 282 RYMQICKVRADEFTMVSVVTA 302
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 18/110 (16%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A++D Y A LF MQ ++ I ++ + G V++A+ + M
Sbjct: 201 ALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLV------RSGQVDRARDLFDHMP 254
Query: 102 RKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSACT 139
+D WTAMI G D T +R DE T V V++AC
Sbjct: 255 ERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G D A + F +MP R+ V W A+I GY++ NR++EAL +F EM
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I P++ T+ LTA MY KCG V+
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI-SDPFPT-----------IRPDEVTYVGVLSACT 139
+A V K+ KD + WTAMI GLA+ D + ++P+ VT++GVLSAC
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418
Query: 140 HNG 142
H G
Sbjct: 419 HGG 421
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 78/185 (42%), Gaps = 46/185 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +VS + + G VD +R+ F + ++D V WTA+I+G LR R EAL F EM+
Sbjct: 137 DAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMR 196
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
+S + DE T+V +L A MY KCG
Sbjct: 197 SSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYC 256
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
+ A +V +M ++ +W A+I G + + I P++ T L+AC
Sbjct: 257 DDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTAC 316
Query: 139 THNGN 143
G+
Sbjct: 317 AQLGS 321
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G VD A F ++P +D WTAMI+G +L LF +M S ++
Sbjct: 345 TALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQ 404
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
P+ T + +L+A + G V++ + R M+
Sbjct: 405 PNGVTFLGVLSACAH--GGLVDEGLELFRLMI 434
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT ++ Y G + AR F +P +D V WTAM+ GY + +AL +F
Sbjct: 171 MPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVF 230
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
++ + DE T+V +++A MY
Sbjct: 231 RRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYS 290
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-----------DPFPT-IRPDEVTYVG 133
KCG+VE+A V + M ++ F++++MIVG AI D T ++P+ VT+VG
Sbjct: 291 KCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVG 350
Query: 134 VLSACTHNG 142
VL+AC+H G
Sbjct: 351 VLTACSHAG 359
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 49/148 (33%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G + AR F +MPERD + WT +I Y R+
Sbjct: 151 VIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRI--------------------- 189
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPTIRP- 126
GD+ A+ + + KD TWTAM+ G A + D R
Sbjct: 190 ----------------GDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRL 233
Query: 127 -------DEVTYVGVLSACTHNGNETFV 147
DEVT VGV+SAC G +
Sbjct: 234 RDEGVEIDEVTLVGVISACAQLGASKYA 261
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+ + ++ Y G V+ A F M ER+ +++MI G+ R R A+ LF +M
Sbjct: 278 NVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDML 337
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ ++P+ T V +LTA + G V++ Q++ M
Sbjct: 338 ETGVKPNHVTFVGVLTACSH--AGLVDQGQQLFASM 371
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 76/215 (35%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA------- 56
K+V++WT ++ GY ++G+++ AR F MP+R++ +W++MI GY ++ +EA
Sbjct: 85 KNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRV 144
Query: 57 ------------------------LTLFPEMQTSNIRPDEFTIVRILTAY---------- 82
L F +MQ PDE T+V +L+A
Sbjct: 145 PVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGK 204
Query: 83 -----------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
MY KCGD+ A+ + +M K+ W +MI G A+
Sbjct: 205 DVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHG 264
Query: 120 PFPTI------------RPDEVTYVGVLSACTHNG 142
+PDE+T++ VLSAC H G
Sbjct: 265 KTKEALEFFGRMEESNEKPDEITFLSVLSACVHGG 299
Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 20/154 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALT 58
M ++ +SW +++ G+ G + AR+ F ++P ++ V WT MIDGY A
Sbjct: 49 MSTRNAVSWIEMIDGFARSGDMVAARRTFNEVPFELKNVVTWTVMIDGYASKGEMEAARL 108
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
LF +M N F +++ Y CK G+V++A+ + ++ ++ W ++I G + +
Sbjct: 109 LFEDMPQRNF----FVWSSMISGY--CKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQN 162
Query: 119 -------DPFPTIR-----PDEVTYVGVLSACTH 140
D F ++ PDEVT VGVLSAC
Sbjct: 163 GFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQ 196
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + AR F +M ++ W +MI G+ + +EAL F M+ SN +PD
Sbjct: 225 LVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPD 284
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD------KFTWTAMIVGLA--ISDPFPT 123
E T + +L+A ++ G VE + KM R + ++G A I D +
Sbjct: 285 EITFLSVLSACVH--GGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHL 342
Query: 124 I-----RPDEVTYVGVLSAC 138
I +P++ + L AC
Sbjct: 343 IKSMPMKPNDTVWGAFLGAC 362
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 42/176 (23%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W ++ + G +D A + F++MPERD V W ++I GY ++ ++ +AL +F EMQ + I
Sbjct: 81 WNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGI 140
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
+P E T+V +L A MY KCG ++ A++
Sbjct: 141 QPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKK 200
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSACTHNG 142
V +M +D W AMIVG ++ + F + I P+ VT++GVL+AC+H G
Sbjct: 201 VFDRMSMRDITCWNAMIVGFSVHGCSREALELFDSMKIEPNPVTFLGVLTACSHGG 256
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MKNKDVIS----WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 56
++NK +++ ++ Y G +D+A++ F +M RD W AMI G+ REA
Sbjct: 170 LQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREA 229
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTA 81
L LF M+ I P+ T + +LTA
Sbjct: 230 LELFDSMK---IEPNPVTFLGVLTA 251
>gi|414589212|tpg|DAA39783.1| TPA: hypothetical protein ZEAMMB73_012385 [Zea mays]
Length = 590
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G++D AR F QMP+++ V W AMI GY R+ +AL F
Sbjct: 272 MDRKDVVSWTAMVSAYAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLRYDDALCTF 331
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
+M PDE T+V +++A M+ K
Sbjct: 332 QQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALVDMFAK 391
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
CGDV +A V KM + TWT MI G A + F + D+ +V
Sbjct: 392 CGDVGRAHLVFNKMKTRCTITWTTMISGFAYNGQFREALLVYNDMCREGVTLDDTVFVAA 451
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 452 LGACAHGG 459
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 19/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW IV+ + G + AR F +MP RD + W MI GY A +LF
Sbjct: 210 MPERNVVSWNTIVAAFTRAGDMVSARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLF 269
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----LA 116
M R D + +++A Y K G+++ A+ + +M K+ +W AMI G L
Sbjct: 270 DIMD----RKDVVSWTAMVSA--YAKIGELDSARVLFDQMPDKNLVSWNAMITGYNHNLR 323
Query: 117 ISDPFPTIR---------PDEVTYVGVLSACTHNGN 143
D T + PDE T V V+SAC G+
Sbjct: 324 YDDALCTFQQMMLEGRFMPDEATLVSVVSACAQLGS 359
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V IARQ F +M RD V W +++ Y+ A+ LF M N+ TIV
Sbjct: 167 GDVGIARQVFDEMANRDVVSWNSIVGVYMSNGDAAGAMELFEAMPERNVVSWN-TIVAAF 225
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI--------RPDEVTY 131
T + GD+ A+ V +M +D +W MI G A S + R D V++
Sbjct: 226 T-----RAGDMVSARAVFDRMPIRDAISWNLMISGYATSGNVESAWSLFDIMDRKDVVSW 280
Query: 132 VGVLSA 137
++SA
Sbjct: 281 TAMVSA 286
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S T +VSGY V AR F++M +R+ V W A+I GY + EAL LF
Sbjct: 310 MSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF 369
Query: 61 PEMQTSNIRPDEFTIVRILTA---------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
++ +I P +T +L + MY KCG +E RV KM +D +W A+
Sbjct: 370 RLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAI 429
Query: 112 IVGLAI----SDPFPTIR--------PDEVTYVGVLSACTHNG 142
IVG A ++ R PD VT +GVL AC+H G
Sbjct: 430 IVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAG 472
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W ++S G +D A + F MPE D W +M+ G+ + +RF E+L F
Sbjct: 76 MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + +E++ L+A MY KC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G V A+ V M+ ++ TW ++I + P + PDEVT V+
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVV 255
Query: 136 SACT 139
SAC
Sbjct: 256 SACA 259
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y+ G ++ + F +M ERD V W A+I GY + EAL +F +M
Sbjct: 391 DIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKML 450
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR------KDKFTWTAMIVGLA-- 116
+PD T++ +L A + G VE+ + M KD +T ++G A
Sbjct: 451 VCGEKPDHVTMIGVLCACSHA--GLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGC 508
Query: 117 ------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P + PD V + +L+AC +GN
Sbjct: 509 LNEAKNLIEAMP-VNPDAVVWGSLLAACKVHGN 540
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 42/180 (23%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G V A + F+ M ER+ V W ++I Y + EAL +F M
Sbjct: 181 DVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMM 240
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
S + PDE T+ +++A MY KC V
Sbjct: 241 DSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKV 300
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
+A+RV +M ++ + T+M+ G A + R + V++ +++ T NG
Sbjct: 301 NEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNG 360
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ + V+S T +++ Y + G +D AR F +P +D+V W AMIDGY + R EAL LF
Sbjct: 448 LPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLF 507
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M S + PDE T+V +L+A MYCK
Sbjct: 508 RRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCK 567
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG + A V + KD W AMI G A+ + F R P ++T++G+
Sbjct: 568 CGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGL 627
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 628 LNACSHSG 635
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G + A F + ++D V+W AMI+GY R+AL +F + + +
Sbjct: 559 TALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGLW 618
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
P + T + +L A + G VE+ + + M R+ + + ++G A I +
Sbjct: 619 PTDITFIGLLNACSH--SGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEA 676
Query: 121 F-----PTIRPDEVTYVGVLSACTHNGN 143
F I PD V +V +L+AC + N
Sbjct: 677 FCLVQSMKITPDAVMWVSLLAACRLHKN 704
>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 605
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW+ +V GY G +D+AR F + P ++ VLWT +I GY + +EA+ L
Sbjct: 247 MAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLC 306
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ S +R D+ + IL A MY KC
Sbjct: 307 DEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYAKC 366
Query: 88 GDVEKAQRVLRKM-LRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGV 134
G V+ A RV M KD +W +MI G I + F T+ +PD T++G+
Sbjct: 367 GCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTFIGL 426
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 427 LCACTHAG 434
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW +V G + G +D A + F +MPERD V W M+DG+ + +A LF
Sbjct: 185 MEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLF 244
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M +I + Y K GD++ A+ + + K+ WT +I G A
Sbjct: 245 ERMAERDIVSWSTMVCG------YSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQ 298
Query: 117 ------ISDPF--PTIRPDEVTYVGVLSACTHNG 142
+ D +R D+ ++ +L+AC +G
Sbjct: 299 VKEAMNLCDEMEKSGLRLDDGFFISILAACAESG 332
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y G V++A + F+ M ERD V W +M+ G ++ AL +F EM
Sbjct: 158 DIFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMP 217
Query: 65 -----TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ N D FT K G+++KA ++ +M +D +W+ M+ G +
Sbjct: 218 ERDRVSWNTMLDGFT-----------KAGEMDKAFKLFERMAERDIVSWSTMVCGYS 263
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+S T +++GY +RG V AR+ F + ERD V W AMI GY+ + EAL LF EM
Sbjct: 147 RDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEM 206
Query: 64 QTSNIRPDEFTIVRILTAY----------------------------------MYCKCGD 89
+N+RPDE T+V +L+A +Y KCGD
Sbjct: 207 MRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGD 266
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + KD +W +I G + + P++VT + VL A
Sbjct: 267 VEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 326
Query: 138 CTHNG 142
C H G
Sbjct: 327 CAHLG 331
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 79/174 (45%), Gaps = 47/174 (27%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+IA F + +D V W +I GY +N ++EAL LF EM S P++ T+
Sbjct: 261 YSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTM 320
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
+ +L A MY KCGD+E A +V M
Sbjct: 321 LSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSM 380
Query: 101 LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+ K +W AMI G A+ D F +R PD++T VG+LSAC+H+G
Sbjct: 381 MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSG 434
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M + W AMI G+ R A LF M+ + I
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT- 123
PD+ T+V +L+A + G ++ + + + + + T + MI L + F
Sbjct: 418 PDDITLVGLLSACSH--SGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEA 475
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 476 EEIIHMMPMEPDGVIWCSLLKACKMHGN 503
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K V+SWT +++G I +++ AR F RD ++WTAM+ Y + N +A LF
Sbjct: 288 LTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLF 347
Query: 61 PEMQTSNIRPDEFTIVRILT---------------AY------------------MYCKC 87
+M+TS +RP + TIV +L+ +Y MY KC
Sbjct: 348 DQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKC 407
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
GD+ A R+ + + +D W A+I G A+ D F ++P+++T++G+L
Sbjct: 408 GDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLL 467
Query: 136 SACTHNG 142
AC+H G
Sbjct: 468 HACSHAG 474
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 35/158 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV ++ Y V+ AR F +M ERD V W+ MI R F AL L E
Sbjct: 156 DRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE 215
Query: 63 MQTSNIRPDEFTIVRILTAY-----------------------------------MYCKC 87
M +RP E +V ++ + MY KC
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
G + A+++ + +K +WTAMI G S+ R
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEAR 313
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D I T +V Y G ++ A + F + RD +W A+I G+ EAL +F EM+
Sbjct: 393 DCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEME 452
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
++P++ T + +L A + G V + +++ KM+
Sbjct: 453 RQGVKPNDITFIGLLHACSH--AGLVTEGKKLFEKMVH 488
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 14/142 (9%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W +++ Y R Q A +AQ+ + D+ + M L+ L E+ +
Sbjct: 92 WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151
Query: 69 RP--DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP---- 122
+ D V MY +C VE A+ V KM+ +D +W+ MI L+ + F
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211
Query: 123 --------TIRPDEVTYVGVLS 136
+RP EV V +++
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVN 233
>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 491
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW ++ Y + G + AR+ F MP R+ W++M+ G +R NR EAL +F
Sbjct: 165 MPERNVVSWNAMLGAYASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVF 224
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + P+E +V ++A MY KC
Sbjct: 225 SEMIGMGVVPNESALVSAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKC 284
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G + A RV M K+ ++W +MI GLA++ +RP+++T++G+L
Sbjct: 285 GGIHNAVRVFAAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLL 344
Query: 136 SACTHNG 142
AC+H+G
Sbjct: 345 GACSHSG 351
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 89/198 (44%), Gaps = 56/198 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW ++SGY G+V+ + F +MP R+ W +I GY+R F+EAL F
Sbjct: 245 MPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECF 304
Query: 61 PEM-----------QTSNIRPDEFTIVRILTAY--------------------------- 82
M + P+++T+V +LTA
Sbjct: 305 KRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFV 364
Query: 83 ------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTI-------- 124
MY KCG +EKA V + KD TW +I GLA ++D
Sbjct: 365 GNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGE 424
Query: 125 RPDEVTYVGVLSACTHNG 142
RPD VT+VG+LSACTH G
Sbjct: 425 RPDGVTFVGILSACTHMG 442
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ER-DYVLWTAMIDGYLRVNRFREALTL 59
KD+I+W I++G G V A F +M ER D V + ++ + R L
Sbjct: 391 KDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLH 450
Query: 60 FPEMQTSNIRPDEFTIVRILTAY-----MYCKCGDVEKAQRVLRKM-LRKDKFTWTAMI 112
F M D+++IV + Y + + G ++KA ++RKM + D W A++
Sbjct: 451 FQSM------VDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALL 503
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 12 IVSGYINRGQVDIARQY--FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
++ Y RG V +A Y FA+M +++ WTA++ ++ A LF ++
Sbjct: 161 LIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLF------DLA 214
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
P ++ + Y + GD+ A+ + +M +D +W ++ G A
Sbjct: 215 PQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYA 261
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++G + ++D AR+ F + E+D V W AMI GY+ +EAL +F
Sbjct: 170 MPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 229
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
EM+ + PD TI+ +L+A
Sbjct: 230 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 289
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR-----------PDEVTY 131
MY KCG +++A V R + +D TW +IVGLA+ +I P+EVT+
Sbjct: 290 MYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEGSIEMFEEMQRLKVWPNEVTF 349
Query: 132 VGVLSACTHNG 142
+GV+ AC+H+G
Sbjct: 350 IGVILACSHSG 360
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ N G + IA + F + V W++M GY + + EA+ LF EM D+
Sbjct: 123 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAW 178
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPTIR 125
++T + CK +++ A+ + + KD TW AMI G L I F +R
Sbjct: 179 NVMITGCLKCK--EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGI---FKEMR 233
Query: 126 -----PDEVTYVGVLSACTHNGN 143
PD VT + +LSAC G+
Sbjct: 234 DAGEHPDVVTILSLLSACAVLGD 256
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++SG++ G V+ A F++MP RD V W +M+ Y + + EAL LF
Sbjct: 123 MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 182
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ ++P E T+V +L+A MY KC
Sbjct: 183 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 242
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G + A +V M KD W +I G+AI ++ P+++T+V +L
Sbjct: 243 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAML 302
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 303 SACSHAG 309
Score = 85.5 bits (210), Expect = 6e-15, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 18/152 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+SW ++ GY+ RG++ R F +M RD + W +I+GY V + EA LF E
Sbjct: 63 DRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLFDE 122
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV--------- 113
M N+ + +L+ ++ KCG+VE+A + +M +D +W +M+
Sbjct: 123 MPERNL----VSWNSMLSGFV--KCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 176
Query: 114 -GLAISDPFPT--IRPDEVTYVGVLSACTHNG 142
LA+ D ++P E T V +LSAC H G
Sbjct: 177 EALALFDQMRAVGVKPTEATVVSLLSACAHLG 208
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +A Q F M +D + W +I G +EA LF EM+ +++
Sbjct: 233 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVE 292
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P++ T V +L+A + G V++ Q++L M
Sbjct: 293 PNDITFVAMLSACSH--AGMVDEGQKLLDCM 321
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 87/180 (48%), Gaps = 45/180 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G++ AR+ F ++ E+D V W +MI GY R+ +A+ LF EM+ + PD
Sbjct: 167 LITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEMRDAGFEPD 226
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
E T+V IL A MY KCGD+ A+RV
Sbjct: 227 EMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVFD 286
Query: 99 KMLRKDKFTWTAMIVGLA---ISDP----FPTIR-----PDEVTYVGVLSACTHNGNETF 146
+M++KD TW AMI G A +SD F +R PD++T VGVLSAC G F
Sbjct: 287 RMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDF 346
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 47/180 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G + AR+ F +M ++D V W AMI GY + EA+ LF M+ S +
Sbjct: 266 SALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVN 325
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD+ T+V +L+A MY KCG ++ A RV
Sbjct: 326 PDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRV 385
Query: 97 LRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M +K++ +W AMI LA +S +RP++++++GVLSAC H G
Sbjct: 386 FEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAG 445
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D+ T ++ Y G +D A + F MP+++ V W AMI R +E+L+LF M
Sbjct: 362 DIYVSTALIDMYAKCGSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMS 421
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----DKFTWTAMIVGL--- 115
+ +RP++ + + +L+A ++ G V++ +++ M K + +V L
Sbjct: 422 KEGGAVRPNDISFIGVLSACVH--AGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLAR 479
Query: 116 --AISDPFPTI-----RPDEVTYVGVLSAC 138
+ + + I +PDEV +L AC
Sbjct: 480 AGHVHEAWDFIEKMPEKPDEVVLGALLGAC 509
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ +SW +++G++ G++++A Q F +MP RD + WTA+I+G L+ +AL F +M
Sbjct: 159 KNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQM 218
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q S + D +I+ +L A MY +CG +
Sbjct: 219 QRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCI 278
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVLSAC 138
E A++V KM ++ +W ++IVG A++ + F + +PD V+Y G L+AC
Sbjct: 279 EFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTAC 338
Query: 139 THNG 142
+H G
Sbjct: 339 SHAG 342
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 4 KDVISWTD-IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFP 61
KD I ++ ++ Y G ++ ARQ F +M +R V W ++I G+ VN F E+L F
Sbjct: 259 KDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGF-AVNGFADESLEFFX 317
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT----WTAMIVGL-- 115
MQ +PD + LTA + G V K + M K T IV L
Sbjct: 318 AMQKEGFKPDGVSYTGALTACSH--AGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYG 375
Query: 116 ---AISDPFPTI-----RPDEVTYVGVLSACTHNGN 143
+ D I +P+EV +L+AC +G+
Sbjct: 376 RAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGD 411
>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 638
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+SW ++ G++ GQ+ +A++ F +MPE+D + W +I G ++ +AL F E
Sbjct: 197 SRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKE 256
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ +RP+E +V +L A MY KCG
Sbjct: 257 LGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGC 316
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSA 137
+++++ + +M KDK++W MI G LA+ + F T P VT++GVL+A
Sbjct: 317 IDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTA 376
Query: 138 CTHNG 142
C+ G
Sbjct: 377 CSRAG 381
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 89/189 (47%), Gaps = 59/189 (31%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+SW +++GY+ G++++A + F +MPERD V AMIDGY +
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK----------- 218
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + +RPD IV +L+A MY K
Sbjct: 219 -EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSK 277
Query: 87 CGDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVG 133
CG +E A V R + R++ W +MI GLAI D F I P+E+T++G
Sbjct: 278 CGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLG 337
Query: 134 VLSACTHNG 142
+LS C+H G
Sbjct: 338 LLSTCSHGG 346
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYV-LWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G ++ A F + R + W +MI G REAL +F EM+ +I P
Sbjct: 271 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 330
Query: 71 DEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDK 105
+E T + +L+ C G VE+ Q M K K
Sbjct: 331 NEITFLGLLST---CSHGGLVEEGQFYFESMHEKYK 363
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++G + ++D AR+ F + E+D V W AMI GY+ +EAL +F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 263
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
EM+ + PD TI+ +L+A
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR-----------PDEVTY 131
MY KCG +++A V R + +D TW +IVGLA+ +I P+EVT+
Sbjct: 324 MYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEGSIEMFEEMQRLKVWPNEVTF 383
Query: 132 VGVLSACTHNG 142
+GV+ AC+H+G
Sbjct: 384 IGVILACSHSG 394
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ N G + IA + F + V W++M GY + + EA+ LF EM D+
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAW 212
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPTIR 125
++T + KC +++ A+ + + KD TW AMI G L I F +R
Sbjct: 213 NVMITGCL--KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGI---FKEMR 267
Query: 126 -----PDEVTYVGVLSACTHNGN 143
PD VT + +LSAC G+
Sbjct: 268 DAGEHPDVVTILSLLSACAVLGD 290
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 46/173 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y N G V A + F +MPE+D V W ++I+G+ + EAL L+ EM + I+PD FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 76 VRILTA---------------YM------------------YCKCGDVEKAQRVLRKMLR 102
V +L+A YM Y +CG VE+A+ + +M+
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 103 KDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSACTHNG 142
K+ +WT++IVGLA++ + + P E+T+VG+L AC+H G
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCG 338
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 58/154 (37%), Gaps = 46/154 (29%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFT---IVRILTA------------- 81
+W +I GY + A +L+ EM+ S + PD T +++ +T
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 82 -----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP---- 120
++Y CGDV A +V KM KD W ++I G A +
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 121 --------FPTIRPDEVTYVGVLSACTHNGNETF 146
I+PD T V +LSAC G T
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ K+VISWT +V GY G VD AR F MPE++ + W AMI GY + R +AL LF
Sbjct: 246 MRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLF 305
Query: 61 PEMQTS-NIRPDEFTIVRILTAY---------------------------------MYCK 86
EM+ + ++ +E T+V +L A MY K
Sbjct: 306 CEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAK 365
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGV 134
CG++ KA+ V +M KD +W A+I G ++ + F + P+++T V
Sbjct: 366 CGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSV 425
Query: 135 LSACTHNG 142
LSAC H G
Sbjct: 426 LSACNHCG 433
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ GY G + AR+ F M +RD + MIDGY+++ R A LF
Sbjct: 184 MSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDLF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+M+ N+ I + Y + GDV++A+ + M K+ +W AMI G
Sbjct: 244 DKMRVKNV------ISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRG 291
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y+ G V AR+ F +M R V WTA+I GY R EA LF M
Sbjct: 157 DLYVGTSLVDMYVKFGDVGFARKVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMV 216
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
++ I Y K G ++ A+ + KM K+ +WT+M+ G +
Sbjct: 217 DRDVAAFNVMIDG------YVKMGRMDLARDLFDKMRVKNVISWTSMVHGYS 262
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SWT +++ Y N V AR+ F +MPER + ++AMI Y+R NRFREAL LF
Sbjct: 149 MGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRGNRFREALDLF 208
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
E+ + I P + ++ +L A M+ K
Sbjct: 209 RELFSVKIEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFK 268
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
CG +E A V K WTAM+ GLA+ + F ++P+ VT+V +
Sbjct: 269 CGSIEHALLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVAL 328
Query: 135 LSACTHNG 142
LS C+H+G
Sbjct: 329 LSGCSHSG 336
>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 89/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW +V G G + +ARQ F MP+RD + W+++IDGY++ + +A+ +F
Sbjct: 175 MPVKNLVSWNSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVF 234
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ S +P+E T+V +L A MY KC
Sbjct: 235 DKMRVSGPKPNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKC 294
Query: 88 GDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
G + +A V R + + D W AMI GLA F ++PDE+TY+
Sbjct: 295 GAINEAFDVFRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKEMNFVGVKPDEITYLS 354
Query: 134 VLSACTHNG 142
+L AC H G
Sbjct: 355 LLHACAHGG 363
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+WT +V+GY ++ AR+YF MPER V W AM+ GY + EAL LF
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 248
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + I PDE T V +++A MY K
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKF 308
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGV 134
GD++ A+++ M ++ TW +MI G A + + PDEVT V V
Sbjct: 309 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 368
Query: 135 LSACTHNG 142
+SAC H G
Sbjct: 369 ISACGHLG 376
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-I 68
T ++ Y G +D AR+ F MP R+ V W +MI GY + + A+ LF EM T+ +
Sbjct: 299 TALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKL 358
Query: 69 RPDEFTIVRILTA---------------------------------YMYCKCGDVEKAQR 95
PDE T+V +++A +MY +CG +E A+R
Sbjct: 359 TPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKR 418
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
V ++M +D ++ +I G A I PD VT++GVL+AC+H G
Sbjct: 419 VFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAG 477
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
++ Y G + AR+ F ++P ER W AM+ GY + +A LF M N+
Sbjct: 136 VIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV- 194
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISD 119
T ++T Y K D+E A+R M + +W AM+ G A + D
Sbjct: 195 ---ITWTAMVTGY--AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFD 249
Query: 120 PF--PTIRPDEVTYVGVLSACTHNGN 143
I PDE T+V V+SAC+ G+
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGD 275
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ A++ F +M RD V + +I G+ EA+ L M+ I PD T
Sbjct: 407 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 466
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
+ +LTA + G +E+ ++V +
Sbjct: 467 IGVLTACSH--AGLLEEGRKVFESI 489
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+S T + +GY++ G +D+AR F QM +D V W +MI Y++ ++A+ LF +M
Sbjct: 238 RDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKM 297
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + PDE T+V +L A MY KCG +
Sbjct: 298 ENEMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALIDMYAKCGSL 357
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
E+A KM +D FTWT I GLA I+P++ T+V VL AC
Sbjct: 358 EEAMVTFYKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQATFVSVLMAC 417
Query: 139 THNG 142
+ +G
Sbjct: 418 SRSG 421
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 69/214 (32%), Gaps = 79/214 (36%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV ++ Y + GQV AR+ F MP RD W ++ Y + E L LF
Sbjct: 106 DSDVYVGNALLHLYGSTGQVTDARRLFDGMPHRDLASWNTLLGAY--NDNAVEVLVLFKR 163
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M I D ++V + +A +Y KCG+
Sbjct: 164 MMYEGIGGDHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGE 223
Query: 90 VEKAQR--------------------------------VLRKMLRKDKFTWTAMIVG-LA 116
++ AQ + +M KD +W +MI +
Sbjct: 224 MDAAQSLFVEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVK 283
Query: 117 ISDPFPTI-----------RPDEVTYVGVLSACT 139
P I PDE T V VL+AC
Sbjct: 284 AKHPKKAIELFRKMENEMVEPDETTMVSVLAACA 317
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ +SW +++G++ G++++A Q F +MP RD + WTA+I+G L+ +AL F +M
Sbjct: 159 KNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQM 218
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q S + D +I+ +L A MY +CG +
Sbjct: 219 QRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCI 278
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
E A++V KM ++ +W ++IVG A++ +PD V+Y G L+AC
Sbjct: 279 EFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTAC 338
Query: 139 THNG 142
+H G
Sbjct: 339 SHAG 342
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 4 KDVISWTD-IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFP 61
KD I ++ ++ Y G ++ ARQ F +M +R V W ++I G+ VN F E+L F
Sbjct: 259 KDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGF-AVNGFADESLEFFY 317
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT----WTAMIVGL-- 115
MQ +PD + LTA + G V K + M K T IV L
Sbjct: 318 AMQKEGFKPDGVSYTGALTACSH--AGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYG 375
Query: 116 ---AISDPFPTI-----RPDEVTYVGVLSACTHNGN 143
+ D I +P+EV +L+AC +G+
Sbjct: 376 RAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGD 411
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 51/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LF EMQ
Sbjct: 162 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 221
Query: 65 TSNIRPDEFTIVRILTA------------------------------------YMYCKCG 88
S PD +T+ +L+A MYCKCG
Sbjct: 222 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 280
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGV 134
+ A++V + M ++D +W AMI+G A + D +RP+ VT+VG+
Sbjct: 281 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 340
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 341 LIACNHRG 348
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 48/195 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y GQ+D A + F +M ER+ V W ++I GY++ + EAL F M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +PD+ TIV L A MY K G V
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+A+ V ++ KD +W ++I G A++ P I PDEVT+ G+LSAC
Sbjct: 506 PEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565
Query: 139 THNGNETFVINSCNL 153
H G FV NL
Sbjct: 566 NHGG---FVDQGLNL 577
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 25/141 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF---REAL 57
M K+++SW ++ Y+ Q+D A + F +MPE+D V WTAMI+GY+RV + RE L
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318
Query: 58 TLFP----EMQTSNI-------RPDE----FTIVRILTAYM-------YCKCGDVEKAQR 95
L P QT+ I R DE F+ + + + Y CG ++A R
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALR 378
Query: 96 VLRKMLRKDKFTWTAMIVGLA 116
+ ++M+ KD +W MI A
Sbjct: 379 LFQEMVCKDMVSWNTMIAAYA 399
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V GY+ G +D A +F ++P + V W M+ G+ R EA LF
Sbjct: 197 MGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM T N+ I Y + ++ A ++ +M KD +WTAMI G
Sbjct: 257 NEMPTKNLVSWNAMI------GAYVRENQIDDAYKLFMEMPEKDSVSWTAMING 304
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V+SW I+SGY G++ + Q+F M ER+ V W M+DGY+ V A F ++
Sbjct: 169 KNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI 228
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
T N+ + V +L+ + + G + +A+ + +M K+ +W AMI
Sbjct: 229 PTPNV----VSWVTMLSGFAH--YGRMTEARNLFNEMPTKNLVSWNAMI 271
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ + T +++GY+ G++D A + F+Q+ RD V W +MI GY R EAL LF
Sbjct: 321 MPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLF 380
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM + D + ++ AY + G ++KA + +M ++ +W ++I G
Sbjct: 381 QEM----VCKDMVSWNTMIAAY--AQAGQMDKALEMFNEMQERNVVSWNSLITG 428
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++++ ++S Y G++ AR+ F MP+R+ V W +MI GYL +A LF
Sbjct: 41 MTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLF 100
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-RKDKFTWTAMIVGLAISD 119
M + D ++ ++T Y + G++EKA+ + + ++D A+I G A
Sbjct: 101 DRM----FKRDIYSWTLMITC--YTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKR 154
Query: 120 PFPTIRP--DE------VTYVGVLSACTHNG 142
F + DE V++ +LS T NG
Sbjct: 155 LFREAKKLFDEMLVKNVVSWNSILSGYTKNG 185
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + +++GY + A++ F +M ++ V W +++ GY + + + L F M
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
N+ + L Y GD++ A +K+ + +W M+ G A
Sbjct: 198 GERNV------VSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFA 244
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREA 56
+KNKDV+SW +++GY G A + F MP R D V +T ++ +
Sbjct: 515 IKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQG 574
Query: 57 LTLFPEM-QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
L LF M +T +I+P ++ + + G +E+A +++ M
Sbjct: 575 LNLFKSMTETYSIKPQSEHYACVIN--LLGRVGRLEEAVEIVQGM 617
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 95/179 (53%), Gaps = 47/179 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y GQV+ AR+ F MP+R+ V WT+MI GY ++ + +EA+ LF +MQ + ++
Sbjct: 235 SSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVK 294
Query: 70 PDEFTIVRILT---------------AY------------------MYCKCGDVEKAQRV 96
D+ TI +++ AY MY KCGD++KA +
Sbjct: 295 VDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDI 354
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPT------IRPDEVTYVGVLSACTHNG 142
M+++D F+WT +I+G A + D F + P+E+T++GVL++C+H G
Sbjct: 355 FCGMVKRDNFSWT-VIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGG 412
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 16/120 (13%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER-----DYVLWTAMI----DGYLRVNRFR 54
D +SW I++GYI+ G + A Q F+QM + D L A++ ++V +
Sbjct: 159 SDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLC 218
Query: 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
AL + T+ + + +++ MY KCG VE A+R+ M ++ WT+MI G
Sbjct: 219 HAL-----LVTNGFEINCYMGSSLIS--MYAKCGQVEDARRIFDGMPDRNAVCWTSMISG 271
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/220 (30%), Positives = 95/220 (43%), Gaps = 78/220 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR------ 54
M N+DV+SW +++GY+ G++++A + F +MPERD V AMIDGY + R
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVF 229
Query: 55 -------------------------EALTLFPEMQTSNIRPDEFTIVRILTAY------- 82
+AL LF EM + +RPD IV +L+A
Sbjct: 230 ETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVE 289
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKML-RKDKFTWTAMIVG 114
MY KCG +E A V R + R++ W +MI G
Sbjct: 290 EGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISG 349
Query: 115 LAIS-------DPFPT-----IRPDEVTYVGVLSACTHNG 142
LAI D F I P+E+T++G+LS C+H G
Sbjct: 350 LAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGG 389
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V YI+ G++++AR+ F +MP RD V W +MI GYL+ A LF EM P+
Sbjct: 150 MVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEM------PE 203
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------LAISDPFPT- 123
+ Y KCG E A++V M KD TWT+MI + D F
Sbjct: 204 RDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREM 263
Query: 124 ----IRPDEVTYVGVLSA 137
+RPD V VLSA
Sbjct: 264 LSLGLRPDGPAIVSVLSA 281
Score = 38.5 bits (88), Expect = 0.88, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYV-LWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G ++ A F + R + W +MI G REAL +F EM+ +I P
Sbjct: 314 LIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEP 373
Query: 71 DEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDK 105
+E T + +L+ C G VE+ Q M K K
Sbjct: 374 NEITFLGLLST---CSHGGLVEEGQFYFESMHEKYK 406
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD ++WT ++ GY + AR+ MP++D V W A+I Y + + EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352
Query: 61 PEMQ-TSNIRPDEFTIVRILTA---------------------------------YMYCK 86
E+Q N++ ++ T+V L+A +MY K
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CGD+EK++ V + ++D F W+AMI GLA+ D F ++P+ VT+ V
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472
Query: 135 LSACTHNG 142
AC+H G
Sbjct: 473 FCACSHTG 480
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 43/187 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF +M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +++ T+V +L+A MY KCG +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG- 142
A+R+ M KD TWT M+ G AIS+ + R D V + ++SA NG
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 143 -NETFVI 148
NE ++
Sbjct: 345 PNEALIV 351
Score = 38.9 bits (89), Expect = 0.80, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT-SNIRPDEFTIVRI 78
++ AR+ F ++P+ + W +I Y ++ F +M + S P+++T +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 79 LTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDK 105
+ A + Y CGD++ A +V + KD
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 106 FTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152
+W +MI G + P ++ VT VGVLSAC N F C+
Sbjct: 198 VSWNSMINGF-VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V+SWT +++G + G++D AR+ F ++P ++ V WTAMI+GY++ + +A LF
Sbjct: 180 MRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M N+RP+EFT+V ++ A MY KC
Sbjct: 240 ERMLIDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G ++ A +V M ++ TW M+ + D F + PD +T+VGVL
Sbjct: 300 GSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAITFVGVL 359
Query: 136 SACTH 140
SAC
Sbjct: 360 SACVQ 364
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G +D A + F M R+ W M+ + E L LF EM+ + +
Sbjct: 290 TALVDMYSKCGSLDAAVKVFGLMEVRNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVV 349
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
PD T V +L+A + + D+E Q+ M T
Sbjct: 350 PDAITFVGVLSACV--QINDLELGQKYFSLMTEHYSLT 385
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 34/140 (24%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G++D A F Q+ + D W MI Y ++++ LF +M PD+FT ++
Sbjct: 66 GKIDYASLVFDQLNDPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVI 125
Query: 80 TA---------------------------------YMYCKC-GDVEKAQRVLRKMLRKDK 105
A +Y K GDV+ +V KM ++
Sbjct: 126 NACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNV 185
Query: 106 FTWTAMIVGLAISDPFPTIR 125
+WT +I GL T R
Sbjct: 186 VSWTTVIAGLVACGKLDTAR 205
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG ++ A+ V ++ K+ +WTAMI G +D +RP+E T V +
Sbjct: 198 CGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSL 257
Query: 135 LSACTHNGN 143
+ ACT G+
Sbjct: 258 IKACTDLGS 266
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 51/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LF EMQ
Sbjct: 242 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 301
Query: 65 TSNIRPDEFTIVRILTA------------------------------------YMYCKCG 88
S PD +T+ +L+A MYCKCG
Sbjct: 302 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 360
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGV 134
+ A++V + M ++D +W AMI+G A + D +RP+ VT+VG+
Sbjct: 361 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 420
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 421 LIACNHRG 428
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY +RG ++ A++ F ++P +D V W AMI GY +++AL LF E
Sbjct: 138 HRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKE 197
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N++PDE T+ +++A +Y KCG+
Sbjct: 198 MMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGE 257
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A +L + KD +W +I G + + P++VT + +L A
Sbjct: 258 VETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 317
Query: 138 CTHNG 142
C H G
Sbjct: 318 CAHLG 322
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 50/177 (28%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+V+ A + + +D + W +I GY +N ++EAL LF EM S P++ T+
Sbjct: 252 YSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 311
Query: 76 VRILTAY-------------------------------------MYCKCGDVEKAQRVL- 97
+ IL A MY KCGD++ A +V
Sbjct: 312 LSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSD 371
Query: 98 RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+ TW AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 372 SSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSG 428
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 17/149 (11%)
Query: 10 TDIVSGYINRGQVDIARQYF-AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T ++ Y G +D A Q + R W AMI G+ R A +F M+ + I
Sbjct: 351 TSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGI 410
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT 123
PD+ T V +L+A + G ++ + + R M + T + MI L S F
Sbjct: 411 EPDDITFVGLLSACSH--SGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKE 468
Query: 124 ---------IRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 469 AEEMINTMPMEPDGVIWCSLLKACKIHGN 497
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 46/173 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y N G V A + F +MPE+D V W ++I+G+ + EAL L+ EM + I+PD FTI
Sbjct: 33 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 92
Query: 76 VRILTA---------------YM------------------YCKCGDVEKAQRVLRKMLR 102
V +L+A YM Y +CG VE+A+ + +M+
Sbjct: 93 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 152
Query: 103 KDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSACTHNG 142
K+ +WT++IVGLA++ + + P E+T+VG+L AC+H G
Sbjct: 153 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCG 205
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEV 129
++Y CGDV A +V KM KD W ++I G A + I+PD
Sbjct: 31 HLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGF 90
Query: 130 TYVGVLSACTHNGNETF 146
T V +LSAC G T
Sbjct: 91 TIVSLLSACAKIGALTL 107
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 85/178 (47%), Gaps = 45/178 (25%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W ++ GY G VDIAR F QM + D + + ++I GY+ R REAL LF +M+ +
Sbjct: 307 WNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGL 366
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
D FT+V +LTA MY KCG VE+A
Sbjct: 367 GADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMV 426
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIRPD-----EVTYVGVLSACTHN 141
++M +D TW+AMI GLA + + F ++ D VTY+ VL+AC+H+
Sbjct: 427 AFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHS 484
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 66/145 (45%), Gaps = 34/145 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDV++WT ++SG G +D AR+ A+ P R+ V WT +I GY R R EA+ F M
Sbjct: 169 KDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ I PDE T++ +L+A MY KCGD
Sbjct: 229 LSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDT 288
Query: 91 EKAQRVLRKMLR-KDKFTWTAMIVG 114
+A+ V + R + W AMI G
Sbjct: 289 GRAREVFDALGRGRGPQPWNAMIDG 313
Score = 39.3 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV T ++ Y+ G+V+ A F QM RD W+AMI G + AL F M
Sbjct: 403 RDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWM 462
Query: 64 QTSNIRPDEFTIVRILTA 81
+ + T + +LTA
Sbjct: 463 KCDGFHANSVTYIAVLTA 480
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 49/139 (35%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ Y G AR+ F + +D V WT +I G
Sbjct: 146 IIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGL------------------------ 181
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT- 123
K G ++ A+R+L + ++ TWT +I G + + D F +
Sbjct: 182 -------------AKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSM 228
Query: 124 ----IRPDEVTYVGVLSAC 138
I PDEVT +G+LSAC
Sbjct: 229 LSDGIAPDEVTVIGMLSAC 247
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y + +A + F ++ +R+ V W+ MI GY R+ EAL LF +MQ + +
Sbjct: 131 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 190
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PDE T+V +++A MY KCG +E+A+ V
Sbjct: 191 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 250
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACTHNG 142
M KD W++MIVGLAI+ + F ++P+ VT++GVLSAC H+G
Sbjct: 251 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSG 308
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T +V+ Y G ++ A++ F MP +D W++MI G L +N E AL F M+ + +
Sbjct: 232 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG-LAINGLAEDALEEFFRMEEAKV 290
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+P+ T + +L+A + G V + +R ML
Sbjct: 291 KPNHVTFIGVLSACAH--SGLVSEGRRYWSSMLE 322
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 48/195 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD++SW +++ Y GQ+D A + F +M ER+ V W ++I GY++ + EAL F M
Sbjct: 386 KDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +PD+ TIV L A MY K G V
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+A+ V ++ KD +W ++I G A++ P I PDEVT+ G+LSAC
Sbjct: 506 PEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSAC 565
Query: 139 THNGNETFVINSCNL 153
H G FV NL
Sbjct: 566 NHGG---FVDQGLNL 577
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 25/141 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF---REAL 57
M K+++SW ++ Y+ Q+D A + F +MPE+D V WTAMI+GY+RV + RE L
Sbjct: 259 MPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREIL 318
Query: 58 TLFP----EMQTSNI-------RPDE----FTIVRILTAYM-------YCKCGDVEKAQR 95
L P QT+ I R DE F+ + + + Y CG ++A R
Sbjct: 319 NLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALR 378
Query: 96 VLRKMLRKDKFTWTAMIVGLA 116
+ ++M+ KD +W MI A
Sbjct: 379 LFQEMVCKDMVSWNTMIAAYA 399
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V GY+ G +D A +F ++P + V W M+ G+ R EA LF
Sbjct: 197 MGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM T N+ I Y + ++ A ++ +M KD +WTAMI G
Sbjct: 257 NEMPTKNLVSWNAMI------GAYVRENQIDDAYKLFMEMPEKDSVSWTAMING 304
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 6/109 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V+SW I+SGY G++ + Q+F M ER+ V W M+DGY+ V A F ++
Sbjct: 169 KNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKI 228
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
T N+ + V +L+ + + G + +A+ + +M K+ +W AMI
Sbjct: 229 PTPNV----VSWVTMLSGFAH--YGRMTEARNLFNEMPTKNLVSWNAMI 271
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ + T +++GY+ G++D A + F+Q+ RD V W +MI GY R EAL LF
Sbjct: 321 MPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLF 380
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM + D + ++ AY + G ++KA + +M ++ +W ++I G
Sbjct: 381 QEM----VCKDMVSWNTMIAAY--AQAGQMDKALEMFNEMQERNVVSWNSLITG 428
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++++ ++S Y G++ AR+ F MP+R+ V W +MI GYL +A LF
Sbjct: 41 MTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLF 100
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-RKDKFTWTAMIVGLAISD 119
M + D ++ ++T Y + G++EKA+ + + ++D A+I G A
Sbjct: 101 DRM----FKRDIYSWTLMITC--YTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKR 154
Query: 120 PFPTIRP--DE------VTYVGVLSACTHNG 142
F + DE V++ +LS T NG
Sbjct: 155 LFREAKKLFDEMLVKNVVSWNSILSGYTKNG 185
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + +++GY + A++ F +M ++ V W +++ GY + + + L F M
Sbjct: 138 QDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM 197
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
N+ + L Y GD++ A +K+ + +W M+ G A
Sbjct: 198 GERNV------VSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFA 244
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW ++ G + G+V A F QM ERD + WT+MI G+++ F +AL F
Sbjct: 153 MHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWF 212
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + + PD TI+ +L A MY +C
Sbjct: 213 REMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRC 272
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G + A++V +M ++ +W +MIVG A++ RPD V++ G L
Sbjct: 273 GCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGAL 332
Query: 136 SACTHNG 142
+AC+H+G
Sbjct: 333 TACSHSG 339
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 4 KDVISWTD-IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KD I ++ ++ Y G + +ARQ F QMP+R V W +MI G+ EAL F
Sbjct: 256 KDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNL 315
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----- 117
M+ RPD + LTA + G V++ + M R K + G +
Sbjct: 316 MRKEGFRPDGVSFTGALTACSH--SGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSR 373
Query: 118 ----SDPFPTI-----RPDEVTYVGVLSACTHNGN 143
D I +P+EV +L+AC +G+
Sbjct: 374 AGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGD 408
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 85/171 (49%), Gaps = 46/171 (26%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDEFTIV 76
R ++ AR+ F +M +RD V W+AMI GY R+ R +A+ LF EMQ + RPDE T+V
Sbjct: 184 GRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMV 243
Query: 77 RILTAY---------------------------------MYCKCGDVEKAQRVLRKMLRK 103
+L+A M+ KCGDV+KA ++ R M +
Sbjct: 244 SVLSACTDLGALELGKWVESYIEKEKVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKDR 303
Query: 104 DKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
+WT++I GLA+ + PD+V ++G+LSAC+H+G
Sbjct: 304 TIVSWTSVIAGLAMHGRGLEAVEFFEEMIKSGVLPDDVAFIGLLSACSHSG 354
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 40/76 (52%), Gaps = 16/76 (21%)
Query: 82 YMYCKCG--DVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF---------PTIRP 126
+MYC CG +E A+ V +M ++D +W+AMI G A SD RP
Sbjct: 179 HMYC-CGRDGIEFAREVFDEMCKRDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRP 237
Query: 127 DEVTYVGVLSACTHNG 142
DE+T V VLSACT G
Sbjct: 238 DEITMVSVLSACTDLG 253
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ ++W ++S Y G++ +AR+ F MP+RD V W +MI GY + ++ LF EM
Sbjct: 323 RNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEM 382
Query: 64 QTS-NIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ +I+PDE TI +L+A +MY KCG
Sbjct: 383 ISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGS 442
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVLSA 137
V A R+ + M +D ++ +I G A ++ I PD VTY+GVL+A
Sbjct: 443 VADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
Query: 138 CTHNG 142
C+H G
Sbjct: 503 CSHAG 507
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 78/220 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++I+WT +V+GY G ++ AR+YF +MPER V W AM Y + +EAL LF
Sbjct: 187 MPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLF 246
Query: 61 PEMQTSNIRPDEFT-------------------IVR-------ILTAY-------MYCKC 87
+M I PD+ T I+R +L ++ M+ K
Sbjct: 247 HQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKF 306
Query: 88 GDVEKAQRVLRK--------------------------------MLRKDKFTWTAMIVGL 115
G++E A+ + + M ++D +W +MI G
Sbjct: 307 GNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366
Query: 116 AISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
A + I+PDEVT VLSAC H G
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIG 406
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ Y GQVD+AR F QM ER W +MI G + EA+ LF M NI
Sbjct: 136 ILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI--- 192
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPT------- 123
T ++T Y K GD+E A+R +M + +W AM A + P
Sbjct: 193 -ITWTSMVTG--YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249
Query: 124 ----IRPDEVTYVGVLSACTHNGNETFV 147
I PD+ T+V +S+C+ G+ T
Sbjct: 250 LEEGITPDDTTWVVTISSCSSIGDPTLA 277
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y + +A + F ++ +R+ V W+ MI GY R+ EAL LF +MQ + +
Sbjct: 200 TALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVV 259
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PDE T+V +++A MY KCG +E+A+ V
Sbjct: 260 PDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEV 319
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACTHNG 142
M KD W++MIVGLAI+ + F ++P+ VT++GVLSAC H+G
Sbjct: 320 FDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSG 377
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T +V+ Y G ++ A++ F MP +D W++MI G L +N E AL F M+ + +
Sbjct: 301 TALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG-LAINGLAEDALEEFFRMEEAKV 359
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+P+ T + +L+A + G V + +R ML
Sbjct: 360 KPNHVTFIGVLSACAH--SGLVSEGRRYWSSML 390
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY ++EAL LF +
Sbjct: 151 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 210
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A +Y KCG+
Sbjct: 211 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 270
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + KD +W +I G + + P++VT + +L A
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 138 CTHNG 142
C H G
Sbjct: 331 CAHLG 335
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+V+ A F + +D + W +I GY +N ++EAL LF EM S P+
Sbjct: 261 LIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 320
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL A MY KCGD+E A++V
Sbjct: 321 DVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQV 380
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML + +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 381 FDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSG 438
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A+Q F M R W AMI G+ + A LF +M+ + I
Sbjct: 362 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 421
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT- 123
PD+ T V +L+A + G ++ + + R M + K T + MI L F
Sbjct: 422 PDDITFVGLLSACSH--SGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEA 479
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC + N
Sbjct: 480 KEMIRTMPMEPDGVIWCSLLKACKMHNN 507
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ ++W ++S Y G++ +AR+ F MP+RD V W +MI GY + ++ LF EM
Sbjct: 323 RNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEM 382
Query: 64 QTS-NIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ +I+PDE TI +L+A +MY KCG
Sbjct: 383 ISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGS 442
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVLSA 137
V A R+ + M +D ++ +I G A ++ I PD VTY+GVL+A
Sbjct: 443 VADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTA 502
Query: 138 CTHNG 142
C+H G
Sbjct: 503 CSHAG 507
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 78/220 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++I+WT +V+GY G ++ AR+YF +MPER V W AM Y + +EAL LF
Sbjct: 187 MPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLF 246
Query: 61 PEMQTSNIRPDEFT-------------------IVR-------ILTAY-------MYCKC 87
+M I PD+ T I+R +L ++ M+ K
Sbjct: 247 HQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKF 306
Query: 88 GDVEKAQRVLRK--------------------------------MLRKDKFTWTAMIVGL 115
G++E A+ + + M ++D +W +MI G
Sbjct: 307 GNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGY 366
Query: 116 AISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
A + I+PDEVT VLSAC H G
Sbjct: 367 AQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIG 406
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 18/148 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ Y GQVD+AR F QM ER W +MI G + EA+ LF M NI
Sbjct: 136 ILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNI--- 192
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPT------- 123
T ++T Y K GD+E A+R +M + +W AM A + P
Sbjct: 193 -ITWTSMVTG--YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQM 249
Query: 124 ----IRPDEVTYVGVLSACTHNGNETFV 147
I PD+ T+V +S+C+ G+ T
Sbjct: 250 LEEGITPDDTTWVVTISSCSSIGDPTLA 277
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 55/197 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+SW +++GY+ D AR+ F MP R+ V WT M+ G R + R+AL LF
Sbjct: 102 MPQRSVVSWNSMLAGYVRCADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLF 161
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------------Y 82
EM+ + + D+ +V L+A +
Sbjct: 162 GEMRRACVELDQVALVAALSACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIH 221
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT----------IR 125
MY CG + +A +V KM RK +WT+MI+ A D F T +R
Sbjct: 222 MYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVR 281
Query: 126 PDEVTYVGVLSACTHNG 142
PDE+T++GVL AC+H G
Sbjct: 282 PDEITFIGVLCACSHAG 298
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-----QTS 66
++ Y + G + A Q F +MP + V WT+MI + + +EAL LF M +
Sbjct: 219 LIHMYASCGILHEAYQVFVKMPRKSTVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVD 278
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTW 108
+RPDE T + +L A + G V++ ++ M K TW
Sbjct: 279 GVRPDEITFIGVLCACSH--AGFVDEGHQIFASM----KHTW 314
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 46/173 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y N G V A + F +MPE+D V W ++I+G+ + EAL L+ EM + I+PD FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 76 VRILTA---------------YM------------------YCKCGDVEKAQRVLRKMLR 102
V +L+A YM Y +CG VE+A+ + +M+
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 103 KDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSACTHNG 142
K+ +WT++IVGLA++ + + P E+T+VG+L AC+H G
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCG 338
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 56/154 (36%), Gaps = 46/154 (29%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTA---------------- 81
+W +I GY + A +L+ EM+ S + PD T ++ A
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 82 -----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP---- 120
++Y CGDV A +V KM KD W ++I G A +
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 121 --------FPTIRPDEVTYVGVLSACTHNGNETF 146
I+PD T V +LSAC G T
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G++ +AR+ F +MP +D V W+ MI G+ F +A F
Sbjct: 198 MPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFF 257
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
E++ +RP+E ++ +L+A Y KC
Sbjct: 258 REVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKC 317
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G+++ A+ V MLR+ +WTAMI G+A+ I+PD +T++ +L
Sbjct: 318 GNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISIL 377
Query: 136 SACTHNG 142
AC+H G
Sbjct: 378 YACSHAG 384
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY ++EAL LF +
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A +Y KCG+
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A + ++ KD +W +I G + + P++VT + +L A
Sbjct: 317 LETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 138 CTHNG 142
C H G
Sbjct: 377 CAHLG 381
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F ++P +D + W +I GY +N ++EAL LF EM S P+
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL A MY KCGD+E A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+L K +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F + + W AMI G+ R + LF M+ I+
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M + K T + MI L S F
Sbjct: 468 PDDITFVGLLSACSH--SGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 525
Query: 123 -------TIRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC +GN E+F N
Sbjct: 526 EEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +++ I +G + A F++MPER+ WT+MI GY++ + +EA+ LF
Sbjct: 189 MPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLF 248
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + ++ +E T+V +L A MY KC
Sbjct: 249 AKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC 308
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +E+A +V +M + +W+AMI GLA+ I P+ VT++G+L
Sbjct: 309 GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368
Query: 136 SACTHNG 142
AC+H G
Sbjct: 369 HACSHMG 375
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G ++ A + F +M ER V W+AMI G R EAL LF +M I P+
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T + +L A + G + + +R M R
Sbjct: 361 GVTFIGLLHACSH--MGLISEGRRFFASMTR 389
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY +RG + A++ F ++P +D V W AMI GY ++EAL LF E
Sbjct: 127 HRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEE 186
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M N+RPDE T V +L+A +Y KCG+
Sbjct: 187 MMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGE 246
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + + KD +W +I G + + P++VT + VL A
Sbjct: 247 VETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPA 306
Query: 138 CTHNG 142
C H G
Sbjct: 307 CAHLG 311
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 47/174 (27%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+V+ A F + +D + W +I GY +N ++EAL LF EM S P++ T+
Sbjct: 241 YSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 300
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
+ +L A MY KCGD+E A +V M
Sbjct: 301 LSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM 360
Query: 101 LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
L K +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 361 LHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSG 414
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M + W AMI G+ R + LF M+ I
Sbjct: 338 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIE 397
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M + K T + MI L S F
Sbjct: 398 PDDITFVGLLSACSH--SGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 455
Query: 123 -------TIRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC +GN E+F N
Sbjct: 456 EEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQN 493
>gi|255541938|ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 319
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 86/190 (45%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ I+W +++GY G +D AR +F +MP RD W+AMI Y+ R+ L LF
Sbjct: 1 MPERNTITWNTMITGYSRSGNIDKARAFFEEMPLRDVGSWSAMITAYINHGRWDRGLLLF 60
Query: 61 PEMQT-SNIRPDEFTIVRILTAY-----------------------------------MY 84
EM T S ++PD+ T+ +L+ MY
Sbjct: 61 REMMTNSELKPDQVTVGTVLSGCTHMGFLGLLVGKSAHGFIMKNRWELNVEIGTVLVDMY 120
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYV 132
KCG ++ A RV M ++ TWTA+I G A IRP+E+T+
Sbjct: 121 VKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNELTFT 180
Query: 133 GVLSACTHNG 142
G+L+ C H+G
Sbjct: 181 GILNVCAHSG 190
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 1 MKNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 57
MKN+ +V T +V Y+ G + A + F M ER+ + WTA+I G + E L
Sbjct: 102 MKNRWELNVEIGTVLVDMYVKCGYLKNAIRVFDLMKERNVMTWTALICGAAQHGYSEETL 161
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
+LF MQ + IRP+E T IL + G VE+ ++ R
Sbjct: 162 SLFNMMQEAKIRPNELTFTGILNVCAH--SGLVEEGKKYFR 200
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 88/187 (47%), Gaps = 46/187 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
N ++I T I+ Y G IAR F +MP+R+ V W +MI+ Y + R +EAL LF
Sbjct: 232 SNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFF 291
Query: 62 EMQTSNIRPDEFTIVRILT---------------AY------------------MYCKCG 88
+M TS I PD+ T + +L+ AY MY K G
Sbjct: 292 DMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALLDMYAKTG 351
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR------PDEVTYVGVL 135
+ AQ++ + ++D WT+MI GLA+ F T+ PD +TY+GVL
Sbjct: 352 GLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMHEDSSLVPDHITYIGVL 411
Query: 136 SACTHNG 142
AC+H G
Sbjct: 412 FACSHVG 418
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 52/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y++ + + F +P + V WT +I GY+ N+ EAL +F +M
Sbjct: 127 DAYTATGLLHMYVSCADMKSGLKVFDNIPIWNVVAWTCLIAGYVNNNQPYEALKVFKDMS 186
Query: 65 TSNIRPDEFTIVRIL---------------------TAY-------------------MY 84
+ P+E T+V L Y MY
Sbjct: 187 HCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAGYDPFMSTSNSNIILATAILEMY 246
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVTYV 132
KCG + A+ + KM +++ +W +MI + L I PD+ T++
Sbjct: 247 AKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHKEALDLFFDMWTSGIYPDKATFL 306
Query: 133 GVLSACTH 140
VLS C H
Sbjct: 307 SVLSVCAH 314
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D+ T ++ Y G + A++ F+ + +RD V+WT+MI+G EAL +F M
Sbjct: 336 DISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQTMH 395
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ S++ PD T + +L A + G VE+A++ R M
Sbjct: 396 EDSSLVPDHITYIGVLFACSH--VGLVEEAKKHFRLM 430
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV++ ++ G G+VD +R+ F MP R V W +MI GY+R R EAL LF +MQ
Sbjct: 189 DVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQ 248
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ P EFT+V +L+A MYCKCG +
Sbjct: 249 GERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIV 308
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
KA V + W ++I+GLA++ ++PD V+++GVL+AC
Sbjct: 309 KAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACK 368
Query: 140 HNG 142
+ G
Sbjct: 369 YIG 371
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEM 63
+VI T I+ Y G + A + F P R W ++I G L +N + R+A+ F ++
Sbjct: 290 NVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIG-LALNGYERKAIEYFSKL 348
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA 116
+ S+++PD + + +LTA Y G V KA+ M+ K +T ++G A
Sbjct: 349 EASDLKPDHVSFIGVLTACKY--IGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQA 406
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P ++ D + + +LS+C +GN
Sbjct: 407 ALLEEAEQLIKGMP-LKADFIIWGSLLSSCRKHGN 440
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93
E+D + +I Y EA +F E+ ++ I+ + KCG+V+K+
Sbjct: 156 EKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGL------AKCGEVDKS 209
Query: 94 QRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHN 141
+R+ M + + TW +MI G + + P E T V +LSAC H
Sbjct: 210 RRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHL 269
Query: 142 G 142
G
Sbjct: 270 G 270
>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 629
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 95/188 (50%), Gaps = 50/188 (26%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N++V+ WT +VSGY + G V+ R F +MP+R+ +AM+ GY+R + F E + LF E
Sbjct: 184 NRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNSAMVSGYVRNSFFSEGVQLFRE 243
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
++ + ++ + +V +L A Y
Sbjct: 244 LKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFY 303
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG V+ A++V KML KD TW+AMI+GLAI+ + F + +P+EVT+V
Sbjct: 304 AKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFV 363
Query: 133 GVLSACTH 140
GVL+AC H
Sbjct: 364 GVLTACNH 371
Score = 39.7 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 20/140 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV + +++ + G + +ARQ F + R+ V WT+++ GY E +F +
Sbjct: 153 SSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDK 212
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M N E + +++ Y+ + + ++ R++ +KDK G A
Sbjct: 213 MPQRN----EASNSAMVSGYV--RNSFFSEGVQLFRELKKKDK--------GRA------ 252
Query: 123 TIRPDEVTYVGVLSACTHNG 142
++ + V VL+ACT G
Sbjct: 253 RVKFNGALLVSVLNACTVMG 272
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78
RG A F MP + + ++I Y ++F ++L++F +M NIRP+ T +
Sbjct: 71 RGDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTL 130
Query: 79 LTA 81
+ +
Sbjct: 131 VKS 133
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +++ I +G + A F++MPER+ WT+MI GY++ + +EA+ LF
Sbjct: 189 MPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLF 248
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + ++ +E T+V +L A MY KC
Sbjct: 249 AKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKC 308
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +E+A +V +M + +W+AMI GLA+ I P+ VT++G+L
Sbjct: 309 GCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLL 368
Query: 136 SACTHNG 142
AC+H G
Sbjct: 369 HACSHMG 375
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G ++ A + F +M ER V W+AMI G R EAL LF +M I P+
Sbjct: 301 LIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPN 360
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T + +L A + G + + +R M R
Sbjct: 361 GVTFIGLLHACSH--MGLISEGRRFFASMTR 389
>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 622
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V+GY G V+ AR+ F +MP R+ W+ MI+GY + N F +A+ LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 61 PEMQTSNIRPDEFTIVRILT-------------AY--------------------MYCKC 87
M+ + +E +V +++ AY M+ +C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR------------PDEVTYVGVL 135
GD+EKA V + D +W+++I GLA+ P +VT+ VL
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 358 SACSHGG 364
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT +V G G VD AR+ F MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + F L A MYCKCG V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSACT 139
+A RV + + TW MI G A+ D + PD+VT + VL+AC
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 140 HNG 142
H G
Sbjct: 343 HAG 345
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G VD A + F +P R W MI G+ R +AL LF +M+ + +
Sbjct: 269 TAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVA 328
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PD+ T++ +LTA + G+V + +R L ++ +
Sbjct: 329 PDDVTLLNVLTACAH--AGEVSEGRRYLNHIVSR 360
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++ V+S+T +++GY +RG AR+ F ++ +D V W AMI GY+ ++EAL L+ E
Sbjct: 136 HRHVVSYTALITGYASRGYTKSARKLFDEILVKDIVSWNAMISGYVETFNYKEALELYKE 195
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N++PDE T+V +++A MY KCG+
Sbjct: 196 MVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSKCGE 255
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A R+ + ++ KD +W +I G + + P++VT + VLSA
Sbjct: 256 METACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSA 315
Query: 138 CTHNG 142
C H G
Sbjct: 316 CAHLG 320
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 47/174 (27%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+++ A + F + +D + W +I G+ +N ++EAL LF EM S P++ T+
Sbjct: 250 YSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQEMLRSGESPNDVTM 309
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
+ +L+A MY KCGD+E A +V M
Sbjct: 310 LSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSM 369
Query: 101 LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
L + +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 370 LARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSG 423
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M R W AMI G+ + A LF +M+ S I
Sbjct: 347 TSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDLFSKMRKSGIE 406
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
PD+ T V +L+A + G ++ + + M + K T
Sbjct: 407 PDDITFVGLLSACSH--SGMLDLGRHIFSSMTQDYKIT 442
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 82/172 (47%), Gaps = 45/172 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + A + F M ERD V W +MI+G+ R EALTLF EM + PD FT+
Sbjct: 163 YAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTV 222
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
V +L+A +Y KCG + +AQRV +M
Sbjct: 223 VSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSE 282
Query: 103 KDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
++ +WT++IVGLA++ + F + P E+T+VGVL AC+H G
Sbjct: 283 RNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCG 334
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRPDEFT 74
Y G + A++ F++M ER+ V WT++I G L VN F EAL LF EM+ + P E T
Sbjct: 264 YAKCGAIREAQRVFSEMSERNAVSWTSLIVG-LAVNGFGEEALELFKEMEGQGLVPSEIT 322
Query: 75 IVRILTAYMYCKCGDVEKAQRVLRKM 100
V +L Y CG +++ R+M
Sbjct: 323 FVGVL--YACSHCGMLDEGFEYFRRM 346
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 22/160 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREA 56
+ N +V +W I+ GY A ++ QM E D + ++ + RE
Sbjct: 78 IHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREG 137
Query: 57 LTLFPEMQTSNIRP--DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ + IR + V+ ++Y CGD E A +V M +D W +MI G
Sbjct: 138 ----EAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMING 193
Query: 115 LAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
A++ + PD T V +LSA G
Sbjct: 194 FALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELG 233
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S T +++ Y G++D AR F M ERD V W MIDGY + EAL LF
Sbjct: 119 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 178
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + +P+E T++ +L+A MY KC
Sbjct: 179 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 238
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G +E A+ V K+ KD W +MIVG A+ F + + P +T++G+L
Sbjct: 239 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 298
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 299 SACGHSG 305
>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
Length = 587
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 256 MPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 315
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M+ S++ PDE T+V +L+A M+ K
Sbjct: 316 NNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMHSK 375
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFP--------TIRPDEVTYVGV 134
CG +++A V + K W AMI GLAI F +I+PD++T++GV
Sbjct: 376 CGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQIERCSIKPDDITFIGV 435
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 436 LNACSHSG 443
Score = 75.5 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY V+IA + FA+MPE+D + W ++IDGY++ R +A LF
Sbjct: 196 KNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYV 255
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V KA+ + +M +D + +M+ G
Sbjct: 256 MP----RRDVVTWATMIDG--YAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHM 309
Query: 115 --LAISDPFPT---IRPDEVTYVGVLSACTHNG 142
L I + + PDE T V VLSA G
Sbjct: 310 EALEIFNNMEKDSHLSPDETTLVIVLSAIAQLG 342
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 60/142 (42%), Gaps = 34/142 (23%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + ARQ F +MP+RD V + +MIDGY++ + RE L
Sbjct: 131 WSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDL 190
Query: 60 FPEMQTSNIR-----------PDEFTIVRILTAYM--------------YCKCGDVEKAQ 94
P+ + I D I L A M Y K G +E A+
Sbjct: 191 MPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAK 250
Query: 95 RVLRKMLRKDKFTWTAMIVGLA 116
+ M R+D TW MI G A
Sbjct: 251 DLFYVMPRRDVVTWATMIDGYA 272
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 51/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LF EMQ
Sbjct: 176 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 235
Query: 65 TSNIRPDEFTIVRILTA------------------------------------YMYCKCG 88
S PD +T+ +L+A MYCKCG
Sbjct: 236 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 294
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGV 134
+ A++V + M ++D +W AMI+G A + D +RP+ VT+VG+
Sbjct: 295 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 354
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 355 LIACNHRG 362
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ + DV++ ++ GY G++D +R F M R V W +MI GY+R + EAL LF
Sbjct: 192 LYDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELF 251
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ EFT+V +L A MYCKC
Sbjct: 252 NKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKC 311
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGV 134
G VE A V R+ W ++I+GLA++ + ++PD V+++GV
Sbjct: 312 GSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGV 371
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 372 LTACKHLG 379
Score = 39.7 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ A + F +MP + W +I + R + + A++LF +M S I+P T +
Sbjct: 75 GNINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVF 134
Query: 80 TAYMYCKCGDVE-KAQ---RVLRKMLRKDKFTWTAMI 112
A Y + G AQ RV++ L+ D+F +I
Sbjct: 135 KA--YAQLGHAHYGAQLHGRVVKLGLQNDQFICNTII 169
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY + G + A++ F ++P +D V W AMI GY ++EAL LF E
Sbjct: 129 HRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKE 188
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +L+A +Y KCG
Sbjct: 189 MMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQ 248
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + KD +W +I G + + P++VT V +L A
Sbjct: 249 VETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPA 308
Query: 138 CTHNG 142
C H G
Sbjct: 309 CAHLG 313
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/178 (33%), Positives = 82/178 (46%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y GQV+ A F + +D V W +I GY +N ++EAL LF EM S P+
Sbjct: 239 LIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ TIV IL A MY KCGD+E A +V
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQV 358
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML K +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 359 FNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSG 416
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M + W AMI G+ R LF M+ + I
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIE 399
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT- 123
PD+ T V +L+A + G ++ + + + M + T + MI L S F
Sbjct: 400 PDDITFVGLLSACSH--SGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEA 457
Query: 124 --------IRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC +GN E+F N
Sbjct: 458 KEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARN 495
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S T +++ Y G++D AR F M ERD V W MIDGY + EAL LF
Sbjct: 185 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 244
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + +P+E T++ +L+A MY KC
Sbjct: 245 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 304
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G +E A+ V K+ KD W +MIVG A+ F + + P +T++G+L
Sbjct: 305 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGIL 364
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 365 SACGHSG 371
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 39/172 (22%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y + G++D + F + WTA+I G+ +AL + +M T + P+ FT
Sbjct: 72 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131
Query: 76 VRIL---------------------------TAYM--YCKCGDVEKAQRVLRKMLRKDKF 106
IL T + Y + GDV AQ++ M K
Sbjct: 132 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 191
Query: 107 TWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG--NETFVI 148
+ TAM+ A R D V + ++ T NG NE V+
Sbjct: 192 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 243
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 51/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LF EMQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 65 TSNIRPDEFTIVRILTA------------------------------------YMYCKCG 88
S PD +T+ +L+A MYCKCG
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGV 134
+ A++V + M ++D +W AMI+G A + D +RP+ VT+VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 364 LIACNHRG 371
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT +++GY G AR+ F +MPER+ V W+ MI GY R N F +A+ F +Q
Sbjct: 182 DVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQ 241
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +E +V ++++ MY +CG+VE
Sbjct: 242 AEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVE 301
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
KA V ++ KD WTA+I GLA+ P ++T+ VL+AC+
Sbjct: 302 KAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACS 361
Query: 140 HNG 142
H G
Sbjct: 362 HAG 364
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 MKNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 57
M+NK ++I T +V Y G V+ A F Q+PE+D + WTA+I G +AL
Sbjct: 276 MRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKAL 335
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
F EM P + T +LTA + G VE+ + M R
Sbjct: 336 WYFSEMAKKGFVPRDITFTAVLTACSH--AGMVERGLEIFESMKR 378
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 52/151 (34%), Gaps = 49/151 (32%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +V Y + G ++ AR F +M D V WT MI GY R + A LF M
Sbjct: 150 QDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRM 209
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
N+ TW+ MI G A ++ F
Sbjct: 210 PERNL-------------------------------------VTWSTMISGYARNNCFEK 232
Query: 124 ------------IRPDEVTYVGVLSACTHNG 142
+ +E VGV+S+C H G
Sbjct: 233 AVETFEALQAEGVVANETVMVGVISSCAHLG 263
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT +V+GYI G V AR+ F +MPE++ V W+ MI GY + + F +A+ L+ +Q
Sbjct: 178 DVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQ 237
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + +E +V ++ + MY +CG ++
Sbjct: 238 SEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSID 297
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
KA V ++ +D +WT +I G A+ + P E+T+ VLSAC+
Sbjct: 298 KAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACS 357
Query: 140 HNG 142
H G
Sbjct: 358 HGG 360
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 1 MKNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 57
++NK ++I T +V Y G +D A F Q+P RD + WT +I G+ +AL
Sbjct: 272 LRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLR 102
F M+ + + P E T +L+A C G VE+ + M R
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSA---CSHGGLVERGLELFESMKR 374
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 55/152 (36%), Gaps = 49/152 (32%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV +V+ Y G + A F ++ D V WT+M+ GY++
Sbjct: 145 DSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIK------------- 191
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF- 121
GDV A+++ KM K+ TW+ MI G A + F
Sbjct: 192 ------------------------SGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFD 227
Query: 122 -----------PTIRPDEVTYVGVLSACTHNG 142
+ +E V V+++C H G
Sbjct: 228 KAIELYFLLQSEGVHANETVMVSVIASCAHLG 259
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 45/163 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
A++ F + P +D V W+AMI GY R A+TLF EMQ + + PDE T+V +L+A
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
M+ KCGDV++A +V R+M + +WT+M
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405
Query: 112 IVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
IVGLA+ + PD+V ++GVLSAC+H+G
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSG 448
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G VD A + F +M R V WT+MI G R EA+ +F EM + PD+ + +L
Sbjct: 382 GDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVL 441
Query: 80 TAYMYCKCGDVEKAQRVLRKM 100
+A + G V+K M
Sbjct: 442 SACSH--SGLVDKGHYYFNTM 460
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 53/162 (32%)
Query: 33 PERDYVLWTAMIDGYLRVNRFR-EALTLFPEMQTSNIRPDEFTIVRILTA---------- 81
P D L+ +I + + + AL + M+ + P++FT +L A
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246
Query: 82 -----------------------YMYCKC------GDVEKAQRVLRKMLRKDKFTWTAMI 112
+MYC C G V A++V + KD TW+AMI
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMI 305
Query: 113 VGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
G A + + PDE+T V VLSAC G
Sbjct: 306 GGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLG 347
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 85/183 (46%), Gaps = 49/183 (26%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
W +++GY G + AR F MPE RD V WT +I GY + + EA+TLF M
Sbjct: 196 WNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTHSPNEAITLFRIMLLQ 255
Query: 67 NIRPDEFTIVRILTAY-----------------------------------MYCKCGDVE 91
N++PDE I+ +L+A MY K GD+
Sbjct: 256 NVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVPLCNSLIDMYAKSGDIS 315
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
KA+++ + M K TWT +I GLA+ D F ++P+EVT + VLSAC+
Sbjct: 316 KARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKPNEVTLIAVLSACS 375
Query: 140 HNG 142
H G
Sbjct: 376 HVG 378
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + ARQ F M + + WT +I G +EAL +F M+ + ++P+
Sbjct: 304 LIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKARVKPN 363
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
E T++ +L+A + G VE + + M K
Sbjct: 364 EVTLIAVLSACSH--VGLVELGRNIFTSMRSK 393
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K +I T ++SGY G V AR F QM ERD V W+AMI GY ++ +EAL LF
Sbjct: 283 LSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLF 342
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM PD+ T++ +++A MY KC
Sbjct: 343 DEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKC 402
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++ KA+ V M RK+ +W++MI A+ + I P+ VT++GVL
Sbjct: 403 GNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVL 462
Query: 136 SACTHNG 142
AC H G
Sbjct: 463 YACGHAG 469
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 76/209 (36%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +++ Y + ++ AR F +M D V W +IDGY + + +AL LF +M++S+++
Sbjct: 160 TGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMK 219
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQR- 95
PD + +L+A MY CG ++ A++
Sbjct: 220 PDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKI 279
Query: 96 ------------------------------VLRKMLRKDKFTWTAMIVGLAISD-PFPTI 124
+ +M+ +D W+AMI G A SD P +
Sbjct: 280 YDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEAL 339
Query: 125 R-----------PDEVTYVGVLSACTHNG 142
+ PD++T + V+SAC+H G
Sbjct: 340 KLFDEMLQKRSVPDQITMLSVISACSHVG 368
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + AR+ F MP ++ + W++MI+ + A+ LF M+ NI P+
Sbjct: 395 LIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPN 454
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT 109
T + +L Y G VE+ +++ M+ + + T
Sbjct: 455 GVTFIGVL--YACGHAGLVEEGEKLFSSMINEHGISPT 490
>gi|242048094|ref|XP_002461793.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
gi|241925170|gb|EER98314.1| hypothetical protein SORBIDRAFT_02g008110 [Sorghum bicolor]
Length = 601
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D AR F QMP+++ V W AMI GY +R+ EAL F
Sbjct: 269 MDRKDVVSWTAMVSAYAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDEALRTF 328
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
+M PDE T+V +++A M+ K
Sbjct: 329 QQMMLEGRFMPDEATLVSVVSACAQLGSVEYCNWISSYISKSNTHITVALGNALIDMFAK 388
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
CGDV +A+ KM + TWT MI G A + F + D+ ++
Sbjct: 389 CGDVGRARLAFDKMKTRCVITWTTMISGFAYNGQFREALLIYSDICREGVTLDDTIFIAA 448
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 449 LAACAHGG 456
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 23/162 (14%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V+SW IV+ + G + A F +MP RD + W MI GY A TLF M
Sbjct: 210 RNVVSWNTIVAAFTRAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLM 269
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
R D + +++A Y K GD++ A+ + +M K+ +W AMI G + +
Sbjct: 270 D----RKDVVSWTAMVSA--YAKIGDLDSARVLFDQMPDKNLVSWNAMITGYNHNSRYDE 323
Query: 124 -------------IRPDEVTYVGVLSACTHNGNETFVINSCN 152
PDE T V V+SAC G+ + CN
Sbjct: 324 ALRTFQQMMLEGRFMPDEATLVSVVSACAQLGS----VEYCN 361
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A + F +PER+ V W ++ + R A +F
Sbjct: 176 MADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWNTIVAAFTRAGDMVSAHAVF 235
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M P I L Y G+VE A+ + M RKD +WTAM+ A
Sbjct: 236 DRM------PIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSWTAMVSAYAKIGD 289
Query: 121 FPTIR------PDE--VTYVGVLSACTHN 141
+ R PD+ V++ +++ HN
Sbjct: 290 LDSARVLFDQMPDKNLVSWNAMITGYNHN 318
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V +AR+ F M +RD V W +++ Y+ A+ LF + N+ TIV
Sbjct: 164 GDVGVARKVFDGMADRDVVSWNSIVGVYMSSGDTTGAMELFEAIPERNVVSWN-TIVAAF 222
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI--------RPDEVTY 131
T + GD+ A V +M +D +W MI G A S + R D V++
Sbjct: 223 T-----RAGDMVSAHAVFDRMPIRDAISWNLMISGYAGSGNVESARTLFDLMDRKDVVSW 277
Query: 132 VGVLSACTHNGN 143
++SA G+
Sbjct: 278 TAMVSAYAKIGD 289
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DVI T++V Y G V IARQ F +MP RD V W AMI + + +EAL + +
Sbjct: 137 DADVIVCTNLVKCYSAMGSVCIARQVFDKMPARDLVAWNAMISCFSQQGLHQEALQTYNQ 196
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M++ N+ D FT+V ++++ MY KCG
Sbjct: 197 MRSENVDIDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGS 256
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPF--------PTIRPDEVTYVGVLSA 137
+++A + +M RKD FTW +MIVG + S+ I+P+ VT++G+L
Sbjct: 257 LDQAILIFDRMQRKDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCG 316
Query: 138 CTHNG 142
C+H G
Sbjct: 317 CSHQG 321
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +++G++ G V+ A F++MP RD V W +M+ Y + + EAL LF
Sbjct: 318 MPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 377
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ ++P E T+V +L+A MY KC
Sbjct: 378 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 437
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G + A +V M KD W +I G+AI + P+++T+V +L
Sbjct: 438 GKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAIL 497
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 498 SACSHAG 504
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW ++ GY+ ++ AR F +M RD + W MI+GY V + EA LF EM
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEM 318
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV---------- 113
N+ + +L ++ KCG+VE A + +M +D +W +M+
Sbjct: 319 PERNL----VSWNSMLAGFV--KCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 372
Query: 114 GLAISDPFPT--IRPDEVTYVGVLSACTHNG 142
LA+ D ++P E T V +LSAC H G
Sbjct: 373 ALALFDQMRAVGVKPTEATVVSLLSACAHLG 403
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +A Q F M +D + W +I G +EA LF EM+ + +
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P++ T V IL+A + G V++ Q++L M
Sbjct: 488 PNDITFVAILSACSH--AGMVDEGQKLLDCM 516
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV++WT+++ Y G +D A + F +P +D V WT+M+ GY + ++AL F
Sbjct: 170 MPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFF 229
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
+M+ + + DE T+V ++A MY
Sbjct: 230 RKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYS 289
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVG 133
KCG+VE+A V + M + F++++MIVG A+ + I+P+ VT+VG
Sbjct: 290 KCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVG 349
Query: 134 VLSACTHNG 142
+ +AC+H G
Sbjct: 350 LFTACSHAG 358
>gi|357119066|ref|XP_003561267.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 588
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KDV+SWT ++S Y G +D+A++ F QMP ++ V W AMI GY +R+ EAL F
Sbjct: 262 QKDVVSWTAMISAYAKIGNLDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQL 321
Query: 63 MQTSN-IRPDEFTIVRILTAY---------------------------------MYCKCG 88
M RPDE T+V +++A M+ KCG
Sbjct: 322 MMLEGRFRPDEATLVSVVSACAQLGSAEYCSWVSSFIRKNNNDLTVALGNALIDMFAKCG 381
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
DV +AQ + M + TWT MI GL + + D+ ++ VL+
Sbjct: 382 DVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDMCREGVGLDDTVFIAVLA 441
Query: 137 ACTHNG 142
AC+H G
Sbjct: 442 ACSHGG 447
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 73/190 (38%), Gaps = 50/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDVISW IV Y++ G V A + F MPER+ V W ++ + RV A +F
Sbjct: 167 MIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVVSWNTVVASFARVGDMASAQAVF 226
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M T N I L Y GDVE A+ + + +KD +WTAMI A
Sbjct: 227 DRMPTRN------AISWNLMISGYAAGGDVEAARSIFYQTDQKDVVSWTAMISAYAKIGN 280
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 281 LDLAKELFDQMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 340
Query: 137 ACTHNGNETF 146
AC G+ +
Sbjct: 341 ACAQLGSAEY 350
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
D+ N G V ARQ F +M E+D + W +++ Y+ + A+ LF M N+
Sbjct: 146 DVYHKCSNPGYVGDARQVFDEMIEKDVISWNSIVGVYMSSGDVKGAMELFEVMPERNVVS 205
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP--------FP 122
+ + + GD+ AQ V +M ++ +W MI G A +
Sbjct: 206 WNTVVAS------FARVGDMASAQAVFDRMPTRNAISWNLMISGYAAGGDVEAARSIFYQ 259
Query: 123 TIRPDEVTYVGVLSACTHNGN 143
T + D V++ ++SA GN
Sbjct: 260 TDQKDVVSWTAMISAYAKIGN 280
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 16/132 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A+ F+ M R + WT MI G + REAL ++ +M + D+ + +L
Sbjct: 381 GDVGRAQLIFSGMKSRCVITWTTMISGLGFNGQCREALLVYNDMCREGVGLDDTVFIAVL 440
Query: 80 TAYMYCKCGD-VEKAQRVLRKML-------RKDKFTWTAMIVGLA-----ISDPFPTIRP 126
A C G + + + R+M+ R + + ++G A +S I P
Sbjct: 441 AA---CSHGGFLHEGWSIFRQMVELHGIKPRMEHYGCIVDLLGRAELIEYVSKKIVEIEP 497
Query: 127 DEVTYVGVLSAC 138
+Y ++S C
Sbjct: 498 FSSSYQVLVSNC 509
>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g45350, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
Length = 613
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 278 MPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 337
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PD+ T+V +L A MY K
Sbjct: 338 SDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSK 397
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CG ++ A V + K W AMI GLAI F +++PD++T+VGV
Sbjct: 398 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGV 457
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 458 LNACSHSG 465
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW ++SGY VDIA + FA MPE+D + W +MIDGY++ R +A L
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F M R D T ++ Y K G V A+ + +M +D + +M+ G
Sbjct: 275 FDVMP----RRDVVTWATMIDG--YAKLGFVHHAKTLFDQMPHRDVVAYNSMMAG 323
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 36/143 (25%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + ++RQ F +MP+RD V + +MIDGY++ + RE L
Sbjct: 153 WSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDL 212
Query: 60 FPEMQTSNI------------RPDEFTIVRILTAYM--------------YCKCGDVEKA 93
P M+ N+ D I L A M Y K G +E A
Sbjct: 213 MP-MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDA 271
Query: 94 QRVLRKMLRKDKFTWTAMIVGLA 116
+ + M R+D TW MI G A
Sbjct: 272 KGLFDVMPRRDVVTWATMIDGYA 294
>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
Length = 606
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 271 MPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 330
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PD+ T+V +L A MY K
Sbjct: 331 SDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSK 390
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CG ++ A V + K W AMI GLAI F +++PD++T+VGV
Sbjct: 391 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGV 450
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 451 LNACSHSG 458
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW ++SGY VDIA + FA MPE+D + W +MIDGY++ R +A L
Sbjct: 208 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 267
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F M R D T ++ Y K G V A+ + +M +D + +M+ G
Sbjct: 268 FDVMP----RRDVVTWATMIDG--YAKLGFVHHAKTLFDQMPHRDVVAYNSMMAG 316
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 36/143 (25%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + ++RQ F +MP+RD V + +MIDGY++ + RE L
Sbjct: 146 WSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDL 205
Query: 60 FPEMQTSNI------------RPDEFTIVRILTAYM--------------YCKCGDVEKA 93
P M+ N+ D I L A M Y K G +E A
Sbjct: 206 MP-MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDA 264
Query: 94 QRVLRKMLRKDKFTWTAMIVGLA 116
+ + M R+D TW MI G A
Sbjct: 265 KGLFDVMPRRDVVTWATMIDGYA 287
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT +V+ Y G ++ A Q F MP R+ V W+ MI Y ++N+ EA+ LF
Sbjct: 306 MEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLF 365
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + + P + T+V +L+A M+ K
Sbjct: 366 REMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAK 425
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
CGDV +A ++ +M ++ +W MI+ A+ I PD++T++G+
Sbjct: 426 CGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGL 485
Query: 135 LSACTHNG 142
L++C+H+G
Sbjct: 486 LASCSHSG 493
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 34/139 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
+V Y N +D A + F +MPERD V WT ++DGY R EA LF M +RP
Sbjct: 184 LVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRP 243
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
+ T+V ++A M+ KCG V A+ V
Sbjct: 244 NAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVF 303
Query: 98 RKMLRKDKFTWTAMIVGLA 116
M KD ++WT+M+ A
Sbjct: 304 DGMEVKDVYSWTSMVNAYA 322
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 58/194 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PE------------------- 34
M +DV+SWT +V GY G D A + F +M P
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263
Query: 35 --------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
R L A++D + + R A +F M+ ++ ++ ++
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDV----YSWTSMVN 319
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-ISDPFPT-----------IRPDE 128
AY KCGD+E A+++ + M R++ +W+ MI + ++ P + P +
Sbjct: 320 AY--AKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPID 377
Query: 129 VTYVGVLSACTHNG 142
T V VLSAC G
Sbjct: 378 ATLVSVLSACAQLG 391
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F +M ER+ V W MI + + EA+ LF +++ NI PD+ T + +L
Sbjct: 427 GDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLL 486
Query: 80 TAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGLAISDPFPTIR---- 125
+ + G V + +R ++M + + MI VGL + + F R
Sbjct: 487 ASCSH--SGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGL-LEEAFEVARGMPM 543
Query: 126 -PDEVTYVGVLSACTHNGN 143
DE + +L+AC +GN
Sbjct: 544 EADEAGWGALLNACRMHGN 562
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT +V+ Y G ++ A Q F MP R+ V W+ MI Y ++N+ EA+ LF
Sbjct: 306 MEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLF 365
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + + P + T+V +L+A M+ K
Sbjct: 366 REMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAK 425
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
CGDV +A ++ +M ++ +W MI+ A+ I PD++T++G+
Sbjct: 426 CGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGL 485
Query: 135 LSACTHNG 142
L++C+H+G
Sbjct: 486 LASCSHSG 493
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 34/139 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
+V Y N +D A + F +MPERD V WT ++DGY R EA LF M +RP
Sbjct: 184 LVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRP 243
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
+ T+V ++A M+ KCG V A+ V
Sbjct: 244 NAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVF 303
Query: 98 RKMLRKDKFTWTAMIVGLA 116
M KD ++WT+M+ A
Sbjct: 304 DGMEVKDVYSWTSMVNAYA 322
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 58/194 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PE------------------- 34
M +DV+SWT +V GY G D A + F +M P
Sbjct: 204 MPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAF 263
Query: 35 --------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
R L A++D + + R A +F M+ ++ ++ ++
Sbjct: 264 GIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDV----YSWTSMVN 319
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-ISDPFPT-----------IRPDE 128
AY KCGD+E A+++ + M R++ +W+ MI + ++ P + P +
Sbjct: 320 AY--AKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPID 377
Query: 129 VTYVGVLSACTHNG 142
T V VLSAC G
Sbjct: 378 ATLVSVLSACAQLG 391
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F +M ER+ V W MI + + EA+ LF +++ NI PD+ T + +L
Sbjct: 427 GDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLL 486
Query: 80 TAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGLAISDPFPTIR---- 125
+ + G V + +R ++M + + MI VGL + + F R
Sbjct: 487 ASCSH--SGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGL-LEEAFEVARGMPM 543
Query: 126 -PDEVTYVGVLSACTHNGN 143
DE + +L+AC +GN
Sbjct: 544 EADEAGWGALLNACRMHGN 562
>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62260, mitochondrial; Flags: Precursor
gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
Length = 656
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D SW +VSGY + G V++AR YF + PE+ V W ++I Y + ++EA+ LF
Sbjct: 338 MPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLF 397
Query: 61 PEMQTSNIRPDEFTIVRILTAY--------------------------------MYCKCG 88
M +PD T+ +L+A MY +CG
Sbjct: 398 IRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCG 457
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
++ +++R+ +M L+++ TW AMI G A + F +++ P +T+V VL
Sbjct: 458 EIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVL 517
Query: 136 SACTHNG 142
+AC H G
Sbjct: 518 NACAHAG 524
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V+SW ++ Y+ G V AR F QM +RD + W MIDGY+ V+R +A LF EM
Sbjct: 279 KNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEM 338
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI----------- 112
P+ + Y G+VE A+ K K +W ++I
Sbjct: 339 ------PNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKE 392
Query: 113 -VGLAISDPFPTIRPDEVTYVGVLSACT 139
V L I +PD T +LSA T
Sbjct: 393 AVDLFIRMNIEGEKPDPHTLTSLLSAST 420
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQV---DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 57
M +DV++W ++SGY++ G + + AR+ F +MP RD W MI GY + R EAL
Sbjct: 97 MPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEAL 156
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
LF +M P+ + +C+ G+V+ A + RKM KD A++ GL
Sbjct: 157 LLFEKM------PERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGL 208
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR---EAL 57
++ ++ ++W ++SGY+ R +++ AR+ F MP+RD V W MI GY+ R EA
Sbjct: 66 LEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEAR 125
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
LF EM + D F+ +++ Y K + +A + KM ++ +W+AMI G
Sbjct: 126 KLFDEMPSR----DSFSWNTMISG--YAKNRRIGEALLLFEKMPERNAVSWSAMITGF 177
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV +++ Y G++ +R+ F +M +R+ + W AMI GY EAL LF M
Sbjct: 442 DVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSM 501
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96
+++ I P T V +L A + D KAQ V
Sbjct: 502 KSNGIYPSHITFVSVLNACAHAGLVDEAKAQFV 534
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
I G + AR F ++ R+ V W MI GY++ +A LF M + D T
Sbjct: 51 IRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP----KRDVVTWN 106
Query: 77 RILTAYMYCKCGDV---EKAQRVLRKMLRKDKFTWTAMIVGLA 116
+++ Y+ CG + E+A+++ +M +D F+W MI G A
Sbjct: 107 TMISGYV--SCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYA 147
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 56
M ++ +SW+ +++G+ G+VD A F +MP +D A++ G ++ R EA
Sbjct: 162 MPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEA 217
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G+ G+++ AR F QMP R+ V WT +IDGY R + EA+ LF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M I P E T++ ++ A +Y K
Sbjct: 61 RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
G V+ + +V +ML R++ +WT++I G A+ + F IRP+ +T++ V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180
Query: 135 LSACTHNG 142
++AC+H G
Sbjct: 181 INACSHGG 188
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK+K+ ++ ++ Y G + A++ F Q+P +D + W++MI Y + + F ++L LF
Sbjct: 572 MKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 631
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + ++PD I +L+A M+ KC
Sbjct: 632 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKC 691
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVL 135
G +++A +V +M KD +W ++I+GLA D I RP+EVT++GVL
Sbjct: 692 GCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVL 751
Query: 136 SACTH 140
AC +
Sbjct: 752 IACAN 756
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 76/214 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y G + AR F +M +D V W ++I GY + NRF+E L LF MQ
Sbjct: 444 DIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFELMQ 503
Query: 65 TSNIRPDEFTIVRILTA--------------------------YM-------YCKCGDVE 91
++ D+ T+V++++A Y+ YC+ G ++
Sbjct: 504 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQ 563
Query: 92 KAQRVLRKML-------------------------------RKDKFTWTAMIVGLAISDP 120
A++V +M KD +W++MI + +
Sbjct: 564 SAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 623
Query: 121 F------------PTIRPDEVTYVGVLSACTHNG 142
F ++PD V VLSAC H G
Sbjct: 624 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLG 657
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 45/164 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A + F Q+ LW ++ G + + ++A+ + + Q ++PD T +L A
Sbjct: 363 AHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAK 422
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
++Y CGD+ A+ + +ML KD +W ++
Sbjct: 423 TYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSL 482
Query: 112 IVGLAISDPFP------------TIRPDEVTYVGVLSACTHNGN 143
I G + + F ++ D+VT V V+SACTH G+
Sbjct: 483 IGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGD 526
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 59/151 (39%), Gaps = 35/151 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLRVNRFREA 56
M+ KD +SW I+ G N G D A F M P + V + ++ +E
Sbjct: 704 MEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEG 763
Query: 57 LTLFPEMQT-SNIRPDE---FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
L F M+T N+ P +V IL+ + G +EKA+ + +M
Sbjct: 764 LDHFERMKTVHNLEPQMKHYGCVVGILS-----RAGQLEKAKNFINEM------------ 806
Query: 113 VGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 807 ----------PLAPDPVVWRILLGACKTHGN 827
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+ W ++ G+ G VD F QM ER V W +I + R EAL LF
Sbjct: 168 MSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELF 227
Query: 61 PEMQTSNIRPDEFTIVRILT---------------AY-------------------MYCK 86
+M+ +PDE T+V +L +Y YCK
Sbjct: 228 QQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCK 287
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
CG++EKA + +KM K +W +I+G A++ D F +R P++ T+V V
Sbjct: 288 CGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAV 347
Query: 135 LSACTHNG 142
L+AC H+G
Sbjct: 348 LTACVHSG 355
>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 90/186 (48%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++ +W ++S Y G + AR F +MPERD V W MI GY + + A+ LF E
Sbjct: 251 SRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTMISGYAQNGQSAMAIELFKE 310
Query: 63 M-QTSNIRPDEFTIVRILTA---------------------------------YMYCKCG 88
M + +PDE T+V I++A +MY KCG
Sbjct: 311 MIDAKDSQPDEVTMVSIISACGHLGALELGTWIVNFISEYRIELTISGYNALIFMYSKCG 370
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVLS 136
++++AQR+ ++M +D ++ ++I G A +S + PD VTY+GVL+
Sbjct: 371 NMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLLLSMKEEGVDPDHVTYIGVLT 430
Query: 137 ACTHNG 142
AC+H G
Sbjct: 431 ACSHAG 436
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 78/217 (35%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VI+WT +V+G+ ++D AR+YF MP ++ V W A+I GY + EAL LF M
Sbjct: 119 RNVITWTAMVTGFSKIKELDSARKYFDDMPVKNIVSWNAIISGYAQNGFVEEALKLFNHM 178
Query: 64 QTSNIRPDEFTIVRILTAYMYC---------------------------------KCGDV 90
++P+E T ++++ C KCG++
Sbjct: 179 IRLGVQPNETTWATVISSCSSCGDPCRAESFVKLLDKRKIKMNYFVKTALLDMNAKCGNL 238
Query: 91 EKAQRVLR--------------------------------KMLRKDKFTWTAMIVGLAIS 118
E A+ + KM +D +W MI G A +
Sbjct: 239 EAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSARDLFDKMPERDAVSWNTMISGYAQN 298
Query: 119 -------DPFPTI------RPDEVTYVGVLSACTHNG 142
+ F + +PDEVT V ++SAC H G
Sbjct: 299 GQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLG 335
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + W ++ GY G A F+ PER+ + WTAM+ G+ ++ A F
Sbjct: 85 MTERSLADWNSMICGYWKCGNETEACSLFSMTPERNVITWTAMVTGFSKIKELDSARKYF 144
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M NI + I++ Y + G VE+A ++ M+R
Sbjct: 145 DDMPVKNI----VSWNAIISG--YAQNGFVEEALKLFNHMIR------------------ 180
Query: 121 FPTIRPDEVTYVGVLSACTHNGN----ETFV 147
++P+E T+ V+S+C+ G+ E+FV
Sbjct: 181 -LGVQPNETTWATVISSCSSCGDPCRAESFV 210
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S T +++ Y G++D AR F M ERD V W MIDGY + EAL LF
Sbjct: 132 MPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLF 191
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + +P+E T++ +L+A MY KC
Sbjct: 192 RRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKC 251
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVL 135
G +E A+ V K+ KD W +MIVG A+ F + + P +T++G+L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 312 SACGHSG 318
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 61/172 (35%), Gaps = 39/172 (22%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y + G++D + F + WTA+I G+ +AL + +M T + P+ FT
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78
Query: 76 VRILTAY-----------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
IL +Y + GDV AQ++ M K
Sbjct: 79 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138
Query: 107 TWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG--NETFVI 148
+ TAM+ A R D V + ++ T NG NE V+
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVL 190
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 85/183 (46%), Gaps = 49/183 (26%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW +VSG+I VD AR+ F MPERD W+ MI GY + ++ R AL LF +M S
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
I+P+E T+V + +A MY KCG + A
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSAL 720
Query: 95 RVLRKMLRKDKFT---WTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLSACT 139
+ + +R F+ W A+I GLA D F I+P+ +T++GVLSAC
Sbjct: 721 QFFNQ-IRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACC 779
Query: 140 HNG 142
H G
Sbjct: 780 HAG 782
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 76/213 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++SW +++GY G VD+AR+ F ++P++D + W MIDGY+ +NR EAL ++
Sbjct: 462 MPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMY 521
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M S + +E +V +++A + Y C
Sbjct: 522 RAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAAC 581
Query: 88 GDVE-------------------------------KAQRVLRKMLRKDKFTWTAMIVGLA 116
G ++ +A+++ M +D F+W+ MI G A
Sbjct: 582 GMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYA 641
Query: 117 ISDP------------FPTIRPDEVTYVGVLSA 137
+D I+P+EVT V V SA
Sbjct: 642 QTDQSRIALELFHKMVASGIKPNEVTMVSVFSA 674
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 33/143 (23%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
IS +V GY GQ+D AR+ F MP++ V +T MI G ++ FREAL +F +M++
Sbjct: 336 ISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSD 395
Query: 67 NIRPDEFTIVRILTAY---------------------------------MYCKCGDVEKA 93
+ P++ T+V ++ A YC C V +A
Sbjct: 396 GVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEA 455
Query: 94 QRVLRKMLRKDKFTWTAMIVGLA 116
+R+ +M + +W M+ G A
Sbjct: 456 RRLFDRMPEVNLVSWNVMLNGYA 478
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 18/114 (15%)
Query: 41 TAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
++I+ Y + ++A LF T N P I+ Y K G ++ A+++ M
Sbjct: 308 NSLINMYAKRGSIKDAQLLFDACPTLN--PISCNIM----VCGYAKAGQLDNARKLFDIM 361
Query: 101 LRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
K ++T MI+GL ++ F + P+++T V V+ AC+H G
Sbjct: 362 PDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFG 415
>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
Length = 632
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D A++ F MP ++ V W AMI GY +R+ EAL F
Sbjct: 269 MDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 328
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 329 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAK 388
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
CGDV +AQ + KM + TWT MI G A + + D ++
Sbjct: 389 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAA 448
Query: 135 LSACTHNG 142
L+ACTH G
Sbjct: 449 LAACTHGG 456
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 75/196 (38%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+SW IV Y++ G A F MPER+ V W ++ G+ R A T+F
Sbjct: 176 MVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVTARTVF 235
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M P + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 236 DRM------PSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 289
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 290 LDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 349
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 350 ACAQLGS----VEYCN 361
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A+ F +M R + WT MI G+ REAL ++ M + D + L
Sbjct: 390 GDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAAL 449
Query: 80 TAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLAIS--------DPFPTI 124
A + G +++ + +M+ R + + ++G A + + P +
Sbjct: 450 AACTH--GGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMP-L 506
Query: 125 RPDEVTYVGVLSACTHNGNETFV 147
P V +V +LS+C +GN +
Sbjct: 507 EPSVVIWVTLLSSCVAHGNAELI 529
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M +D +SW I+SGY+ GQV+ AR F +MP R+ V WTAMI+GY + F E L+L
Sbjct: 154 MGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSL 213
Query: 60 FPEMQTS--NIRPDEFTIVRILTAY---------------------------------MY 84
F +M S ++P+ T+V +L+A MY
Sbjct: 214 FRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMY 273
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYV 132
KCGDVEKA R+ + K+ +W A+I G +++P+E+T V
Sbjct: 274 SKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLV 333
Query: 133 GVLSACTHNG 142
VLSAC G
Sbjct: 334 NVLSACAGLG 343
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T +V Y G++D A F + E+D LW AMI G R++L +F +M
Sbjct: 363 NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMV 422
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD----KFTWTAMIVGL----- 115
+ ++P++ T + +L+A + G VE+ + M K K A +V L
Sbjct: 423 RAGVQPNDVTFIGVLSACNH--SGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAG 480
Query: 116 AISDPFPTIR-----PDEVTYVGVLSAC 138
+ + + ++ PD + + +LSAC
Sbjct: 481 HLKEAYELVQNMLIPPDSIIWGALLSAC 508
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 49/180 (27%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
I+ Y G++ AR+ F +MPE +D V WTAMIDG++R AL F MQ N
Sbjct: 171 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 230
Query: 68 IRPDEFTIVRILTA---------------------------------YMYCKCGDVEKAQ 94
+RP+EFTIV +L+A MY +CG +++AQ
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290
Query: 95 RVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
V +M +D T+ MI GL+++ +RP VT+VGVL+AC+H G
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 350
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 49/170 (28%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+D A + F + L+TA+IDG++ + +A+ L+ M +I PD + + IL A
Sbjct: 80 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 139
Query: 82 ---------------------------------YMYCKCGDVEKAQRVLRKM----LRKD 104
+Y KCG++ A+RV +M + KD
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 199
Query: 105 KFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
WTAMI G ++ +RP+E T V VLSAC+ G
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 249
>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Vitis vinifera]
Length = 635
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++V GY G++DIAR F +MPERD + AM+ GY++ EAL F
Sbjct: 279 MPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFF 338
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M + + PD T++ L+A MY K
Sbjct: 339 HDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGVALIDMYAK 398
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGV 134
CG ++ A V + K W A+I GLAI ++PD++T++GV
Sbjct: 399 CGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGV 458
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 459 LNACNHAG 466
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNR-FREAL 57
M +D +S+ ++ GY+ G V AR+ F MP +++ + W +MI GY R R A
Sbjct: 183 MMKRDSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAW 242
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF EM ++ I + KCG +E A + +M ++D +W M+ G A
Sbjct: 243 ELFEEMPKRDLISWNSMIDGCV------KCGKMENAHHLFNQMPKRDVVSWANMVDGYA 295
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 13/118 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW ++SGY + + +A + F +MP+RD + W +MIDG ++ + A L
Sbjct: 216 MEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHL 275
Query: 60 FPEMQTSNIRPDEFTIVRILTAYM---YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F +M ++ + A M Y K G+++ A+ + +M +D + AM+ G
Sbjct: 276 FNQMPKRDV---------VSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAG 324
Score = 38.5 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRP 70
++ Y G +D A F + ++ W A+I G L ++ E A LF EM+ ++P
Sbjct: 392 LIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGG-LAIHGLGEVAFELFMEMEKLFVKP 450
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--------DKFTWTAMIVGLA------ 116
D+ T + +L A C + K + +++R+ + I+G A
Sbjct: 451 DDITFIGVLNA---CNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEA 507
Query: 117 --ISDPFPTIRPDEVTYVGVLSACTHNGNET 145
+ P I P++V + +LSAC ++ N T
Sbjct: 508 KKFVEKMP-IEPNDVVWRTLLSACRNHENFT 537
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW ++ GY+ ++ AR F +M RD + W MI+GY + EAL LF +M
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ ++P E T+V +L+A MY KCG +
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
A +V M KD W +I G+AI + P+++T+V +LSAC
Sbjct: 350 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 409
Query: 139 THNG 142
+H G
Sbjct: 410 SHAG 413
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +A Q F M +D + W +I G +EA LF EM+ + +
Sbjct: 337 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 396
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P++ T V IL+A + G V++ Q++L M
Sbjct: 397 PNDITFVAILSACSH--AGMVDEGQKLLDCM 425
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 49/187 (26%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ SW I+ G + IAR+ F QMPE++ + W+ MI GY+ ++ AL+LF +Q
Sbjct: 125 DLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQ 184
Query: 65 T---SNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
T S +RP+EFT+ +L+A MY KCG
Sbjct: 185 TLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCG 244
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVL 135
+E+A+ + + KD W+AMI ++ + F +RP+ VT+V VL
Sbjct: 245 SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL 304
Query: 136 SACTHNG 142
AC H G
Sbjct: 305 CACVHGG 311
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV+ T ++ Y G ++ A+ F + PE+D + W+AMI + E L LF M
Sbjct: 229 DVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARM 288
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+RP+ T V +L A ++ G V + ++M+ +
Sbjct: 289 VNDGVRPNAVTFVAVLCACVH--GGLVSEGNEYFKRMMNE 326
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 86/185 (46%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ V+ T ++ Y G V +AR F + E++ W MI+G++ + + EAL LF E
Sbjct: 219 GRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFRE 278
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQT I+ D+ T+ +L A MY KCG
Sbjct: 279 MQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGS 338
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSA 137
+E A +V +M KD TWTA+I+GLA+ ++PD +T+VGVL+A
Sbjct: 339 IETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAA 398
Query: 138 CTHNG 142
C+H G
Sbjct: 399 CSHAG 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE-M 63
D + +++ Y N G + AR+ F +M ++ V W MI + + ++ EA+ LF M
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++ N++P+E T+V +LTA +YCKCG V
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
+ A+ + K K+ F+W MI G + I+ D+VT +L AC
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298
Query: 139 THNG 142
TH G
Sbjct: 299 THLG 302
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ A F MP++ V WTAM+ GY V + A+ F
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
MQT PD+ +IV +L A Y YC KC
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGV 134
G +++A ++ M KD +W+ +I GLA + +RP+ +T+VG+
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 135 LSACTHNG 142
LSAC++ G
Sbjct: 360 LSACSYAG 367
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ A F MP++ V WTAM+ GY V + A+ F
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
MQT PD+ +IV +L A Y YC KC
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGV 134
G +++A ++ M KD +W+ +I GLA + +RP+ +T+VG+
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 135 LSACTHNG 142
LSAC++ G
Sbjct: 360 LSACSYAG 367
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SW ++S + GQ+ A F MP++ V WTAM+ GY V + A+ F
Sbjct: 180 MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAF 239
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------YMYC--------------------KC 87
MQT PD+ +IV +L A Y YC KC
Sbjct: 240 RSMQTEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGV 134
G +++A ++ M KD +W+ +I GLA + +RP+ +T+VG+
Sbjct: 300 GCIDQALQLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGL 359
Query: 135 LSACTHNG 142
LSAC++ G
Sbjct: 360 LSACSYAG 367
>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 572
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 52/192 (27%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ +W +V+ Y G ++ AR+ F +MPER+ + W+ +I+GY+ +++EAL LF E
Sbjct: 124 SKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 183
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
MQ + P++FT+ +L+A MY
Sbjct: 184 MQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMY 243
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAI----SDPFP---------TIRPDEVT 130
KCG +E+A+RV + +KD ++AMI LA+ + F I P+ VT
Sbjct: 244 AKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVT 303
Query: 131 YVGVLSACTHNG 142
+VG+L AC H G
Sbjct: 304 FVGILGACVHRG 315
>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 408
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+++ T +V GY G+V+IA F MP +D V W+AMI GY ++ EAL LF +M
Sbjct: 74 KEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLFHDM 133
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q S ++PDE T++ +++A M+ KCG +
Sbjct: 134 QRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKCGSL 193
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
A V M +K+ TWT++I A+ I+P+ VT++G+L AC
Sbjct: 194 TLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLLYAC 253
Query: 139 THNG 142
H G
Sbjct: 254 CHAG 257
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + +A F MP+++ V WT++I R ALTLF M++ I+P+ T + +L
Sbjct: 191 GSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLL 250
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDK-------------FTWTAMIVGLAISDPFPT--I 124
Y C G VE+ + + + M+++ + A ++G A +D + +
Sbjct: 251 --YACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQA-ADLIQSMHL 307
Query: 125 RPDEVTYVGVLSACTHNGN 143
RP+ V + +L+AC +G+
Sbjct: 308 RPNVVIWGSLLAACRMHGD 326
>gi|48716351|dbj|BAD22962.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 758
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 52/184 (28%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT +VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 312 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 371
Query: 69 RPDEFTIVRILTAY----------------------------------MYCKCGDVEKAQ 94
DE TIV +L+A MY K G ++ AQ
Sbjct: 372 EADEATIVTVLSACVGYGNIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 431
Query: 95 RVLRKMLRKDKFT----WTAMIVGL----------AISDPFPT--IRPDEVTYVGVLSAC 138
V + D F + AMI GL A+ D + + PD++T+V VLSAC
Sbjct: 432 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDEMGSLGLHPDKITFVCVLSAC 489
Query: 139 THNG 142
H+G
Sbjct: 490 RHSG 493
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 71/220 (32%), Gaps = 81/220 (36%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y + G +AR F +MP RD V + +I Y+ +A +F M
Sbjct: 171 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVHSCCSSDAFEVFRIMV 230
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
S +RPD +T+ ++ A Y KC
Sbjct: 231 DSGLRPDGWTVTALIGACAELQDLRAAKAVHGVARRMLEPRVFHSGEVATSLVDAYVKCR 290
Query: 89 DVEKAQRV---------------------------------LRKMLRKDKFTWTAMIVGL 115
+E A++V +M KD WTA+I G
Sbjct: 291 SMELARQVFDLAGDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 350
Query: 116 AISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+ + DE T V VLSAC GN
Sbjct: 351 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGN 390
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
N++ T V Y G + A++ F+ + + + L+ AMI+G R +A+ LF
Sbjct: 408 NRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIALF 467
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
EM + + PD+ T V +L+A
Sbjct: 468 DEMGSLGLHPDKITFVCVLSA 488
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ +++ W ++ GY+ G AR F +M +R V W MI GY F++A+ +F
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
EM+ +IRP+ T+V +L A MY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLS 136
+EKA V ++ R++ TW+AMI G AI D F +RP +V Y+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 137 ACTHNG 142
AC+H G
Sbjct: 384 ACSHGG 389
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G ++ A F ++P + + W+AMI+G+ + +A+ F +M+
Sbjct: 308 DDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR 367
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISD 119
+ +RP + + +LTA + G VE+ +R +M+ D + M+ L S
Sbjct: 368 QAGVRPSDVAYINLLTACSH--GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSG 425
Query: 120 PFPT---------IRPDEVTYVGVLSACTHNGN 143
I+PD+V + +L AC GN
Sbjct: 426 LLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFPEMQTSN-IRPDEF 73
++ +D A + F QMP+R+ W +I G+ + + A+TLF EM + + P+ F
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRF 129
Query: 74 TIVRILTAYMYCKCGDVEKAQRV----LRKMLRKDKFTWTAMI 112
T +L A K G +++ +++ L+ D+F + ++
Sbjct: 130 TFPSVLKA--CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLV 170
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+ T+++ Y G ++ A + F +MP RD V W +MI Y + EAL ++ +
Sbjct: 158 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 217
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ SN+ D FT+V +L++ MY KCG
Sbjct: 218 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 277
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI------------SDPFPTIRPDEVTYVGVLSA 137
+ A + M ++D FTW +MIVG + S +RP+ +T++G+L
Sbjct: 278 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 337
Query: 138 CTHNG 142
C+H G
Sbjct: 338 CSHQG 342
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/183 (32%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ G VD AR+ F MP+RD+V W AM+ GY+RV R REAL LF EMQ
Sbjct: 189 DVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQ 248
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + E T+V +LTA MY KCG V
Sbjct: 249 KAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVT 308
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
+ V M ++ +TWT+ + GLA++ + P+ VT+V VL C+
Sbjct: 309 MSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCS 368
Query: 140 HNG 142
G
Sbjct: 369 VAG 371
Score = 40.8 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G V ++ + F M ER+ WT+ + G E L LF M+++ +
Sbjct: 295 TALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGME 354
Query: 70 PDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRKDK 105
P+ T V +L C G VE+ + M K K
Sbjct: 355 PNGVTFVAVLRG---CSVAGLVEEGRACFDSMKDKHK 388
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+ T+++ Y G ++ A + F +MP RD V W +MI Y + EAL ++ +
Sbjct: 140 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 199
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ SN+ D FT+V +L++ MY KCG
Sbjct: 200 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 259
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI------------SDPFPTIRPDEVTYVGVLSA 137
+ A + M ++D FTW +MIVG + S +RP+ +T++G+L
Sbjct: 260 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 319
Query: 138 CTHNG 142
C+H G
Sbjct: 320 CSHQG 324
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 51/187 (27%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W +++GY+ G V +AR+ F MP RD V W+ +I GY++ AL +F M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++ +E IV L+A MY KCG V
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYVGVL 135
A+ V M R+D F W +MI GLA +S+ F P +T+VGVL
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFC---PTSITFVGVL 373
Query: 136 SACTHNG 142
+AC+ G
Sbjct: 374 NACSRTG 380
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G V A++ F MP RD W +MI G +A+ LF + + P
Sbjct: 306 LIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPT 365
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIVGLAI 117
T V +L A + G V++ +R + M K D + ++
Sbjct: 366 SITFVGVLNA--CSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVE 423
Query: 118 SDPFPTIRPDEVTYVGVLSACTHNG 142
I PD V + +LSAC +G
Sbjct: 424 LIEGMRIPPDPVLWGTILSACKRHG 448
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 51/187 (27%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W +++GY+ G V +AR+ F MP RD V W+ +I GY++ AL +F M
Sbjct: 197 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNM 256
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++ +E IV L+A MY KCG V
Sbjct: 257 VAQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSV 316
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYVGVL 135
A+ V M R+D F W +MI GLA +S+ F P +T+VGVL
Sbjct: 317 AAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFC---PTSITFVGVL 373
Query: 136 SACTHNG 142
+AC+ G
Sbjct: 374 NACSRTG 380
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 16/145 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G V A++ F MP RD W +MI G +A+ LF + + P
Sbjct: 306 LIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPT 365
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIVGLAI 117
T V +L A + G V++ +R + M K D + ++
Sbjct: 366 SITFVGVLNA--CSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVE 423
Query: 118 SDPFPTIRPDEVTYVGVLSACTHNG 142
I PD V + +LSAC +G
Sbjct: 424 LIEGMRIPPDPVLWGTILSACKRHG 448
>gi|297600128|ref|NP_001048529.2| Os02g0818800 [Oryza sativa Japonica Group]
gi|255671357|dbj|BAF10443.2| Os02g0818800, partial [Oryza sativa Japonica Group]
Length = 601
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 52/184 (28%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT +VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 296 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 355
Query: 69 RPDEFTIVRILTAY----------------------------------MYCKCGDVEKAQ 94
DE TIV +L+A MY K G ++ AQ
Sbjct: 356 EADEATIVTVLSACVGYGNIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 415
Query: 95 RVLRKMLRKDKFT----WTAMIVGL----------AISDPFPT--IRPDEVTYVGVLSAC 138
V + D F + AMI GL A+ D + + PD++T+V VLSAC
Sbjct: 416 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDEMGSLGLHPDKITFVCVLSAC 473
Query: 139 THNG 142
H+G
Sbjct: 474 RHSG 477
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 71/220 (32%), Gaps = 81/220 (36%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y + G +AR F +MP RD V + +I Y+ +A +F M
Sbjct: 155 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVHSCCSSDAFEVFRIMV 214
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
S +RPD +T+ ++ A Y KC
Sbjct: 215 DSGLRPDGWTVTALIGACAELQDLRAAKAVHGVARRMLEPRVFHSGEVATSLVDAYVKCR 274
Query: 89 DVEKAQRV---------------------------------LRKMLRKDKFTWTAMIVGL 115
+E A++V +M KD WTA+I G
Sbjct: 275 SMELARQVFDLAGDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 334
Query: 116 AISDPFPT------------IRPDEVTYVGVLSACTHNGN 143
+ + DE T V VLSAC GN
Sbjct: 335 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGN 374
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
N++ T V Y G + A++ F+ + + + L+ AMI+G R +A+ LF
Sbjct: 392 NRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIALF 451
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
EM + + PD+ T V +L+A
Sbjct: 452 DEMGSLGLHPDKITFVCVLSA 472
>gi|222623920|gb|EEE58052.1| hypothetical protein OsJ_08887 [Oryza sativa Japonica Group]
Length = 779
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 89/184 (48%), Gaps = 52/184 (28%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT +VSGY + DIA++ F +MPE+D V WTA+I G++R R++EA+ LF EM+ +
Sbjct: 272 WTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGF 331
Query: 69 RPDEFTIVRILTAY----------------------------------MYCKCGDVEKAQ 94
DE TIV +L+A MY K G ++ AQ
Sbjct: 332 EADEATIVTVLSACVGYGNIDLAKRLHCLVGRDGLINRNAKLATTFVDMYAKHGCIQTAQ 391
Query: 95 RVLRKMLRKDKFT----WTAMIVGL----------AISDPFPT--IRPDEVTYVGVLSAC 138
V + D F + AMI GL A+ D + + PD++T+V VLSAC
Sbjct: 392 EVFSGV--DDDFKTLELFNAMINGLARCKFGEKAIALFDEMGSLGLHPDKITFVCVLSAC 449
Query: 139 THNG 142
H+G
Sbjct: 450 RHSG 453
Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 48/220 (21%), Positives = 71/220 (32%), Gaps = 81/220 (36%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y + G +AR F +MP RD V + +I Y+ +A +F M
Sbjct: 131 DVFAANSLLHFYGSFGLHSLARNLFDEMPARDTVSFNTLISSYVHSCCSSDAFEVFRIMV 190
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
S +RPD +T+ ++ A Y KC
Sbjct: 191 DSGLRPDGWTVTALIGACAELQDLRAAKAVHGVARRMLEPRVFHSGEVATSLVDAYVKCR 250
Query: 89 DVEKAQRV---------------------------------LRKMLRKDKFTWTAMIVGL 115
+E A++V +M KD WTA+I G
Sbjct: 251 SMELARQVFDLAGDNARNARLWTTMVSGYARAQEFDIAQRLFHEMPEKDTVAWTALIGGF 310
Query: 116 AISDPFPT------------IRPDEVTYVGVLSACTHNGN 143
+ + DE T V VLSAC GN
Sbjct: 311 VRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGN 350
Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLF 60
N++ T V Y G + A++ F+ + + + L+ AMI+G R +A+ LF
Sbjct: 368 NRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIALF 427
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
EM + + PD+ T V +L+A
Sbjct: 428 DEMGSLGLHPDKITFVCVLSA 448
>gi|414879049|tpg|DAA56180.1| TPA: hypothetical protein ZEAMMB73_301223 [Zea mays]
Length = 534
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D S ++ GY G V AR+ F +MP +D V TAMI+GY + R + AL LF
Sbjct: 206 MPTRDTASSMVLIVGYCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRPKVALALF 265
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+++ + I PD T+V +++A M+ KC
Sbjct: 266 RDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNEKVLTALVDMHAKC 325
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G++E+A R++ R D + +TA+I GLA I+P +T+VGVL
Sbjct: 326 GNIEQALSAFREIPRPDAYPYTALISGLATHGHENLALSVFERMRAEDIKPHPITFVGVL 385
Query: 136 SACTHNGN 143
+AC+H GN
Sbjct: 386 TACSHAGN 393
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +S+ ++ + V A FA MP R V W AM+ Y+ A +F EM
Sbjct: 148 DAVSFNSLLCAHARNASVRPAESLFAAMPTRTQVSWNAMVVLYVSAGDLAAACRVFDEMP 207
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----- 119
T + IV YCKCG V+ A+ + KM KD TAMI G A +
Sbjct: 208 TRDTASSMVLIVG------YCKCGLVQNARELFDKMPTKDLVARTAMINGYAQTGRPKVA 261
Query: 120 -------PFPTIRPDEVTYVGVLSACTHNGN 143
I PD T VGV+SA + G+
Sbjct: 262 LALFRDLEAAGIEPDGATMVGVISAVSQIGS 292
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T +++ Y +V +AR F M E ++ V W++MI GY R+ EAL LF +MQ +
Sbjct: 166 TGLLNLYARCEEVALARNVFDGMVEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGV 225
Query: 69 RPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQR 95
PDE T+V +++A MY KCG +E+A+
Sbjct: 226 NPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKS 285
Query: 96 VLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
V M+ +D W+AMIVGLA+ D +RP+ VT+VGVLSAC H+G
Sbjct: 286 VFDSMVERDTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNNVTFVGVLSACAHSG 344
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+ T+++ Y G ++ A + F +MP RD V W +MI Y + EAL ++ +
Sbjct: 533 DQDVVLCTNLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQ 592
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ SN+ D FT+V +L++ MY KCG
Sbjct: 593 MRISNVGFDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGS 652
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI------------SDPFPTIRPDEVTYVGVLSA 137
+ A + M ++D FTW +MIVG + S +RP+ +T++G+L
Sbjct: 653 LASALSIFNSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCG 712
Query: 138 CTHNG 142
C+H G
Sbjct: 713 CSHQG 717
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y+ ++ A + F +MP ++ V W AMI G R+REAL F MQ
Sbjct: 247 DVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQ 306
Query: 65 TSNIRPDEFTIVRILT---------------AYM------------------YCKCGDVE 91
++PDE T+V +L AYM Y KCG ++
Sbjct: 307 DKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSID 366
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI-----------SDPFPT-IRPDEVTYVGVLSACT 139
+A RV M R+D +++TAMI GLA+ S+ F I P+EVT++G+L AC+
Sbjct: 367 EAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426
Query: 140 HNG 142
H G
Sbjct: 427 HGG 429
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 46/169 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + ++ F + P RD V WT +I + + + A+ F EM +R D T+V +L
Sbjct: 160 GSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVL 219
Query: 80 TAY----------------------------------MYCKCGDVEKAQRVLRKMLRKDK 105
+A MY KC D+ A +V +M K+
Sbjct: 220 SACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNV 279
Query: 106 FTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACTHNG 142
TW AMI GLA D F ++PDEVT VGVL++C + G
Sbjct: 280 VTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLG 328
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G +D A + F M RD +TAMI G A +F EM I P+E T
Sbjct: 359 YAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTF 418
Query: 76 VRILTAYMYCKCGD-VEKAQRVLRKM-----LRKDKFTWTAMIVGLAISDPFPT------ 123
+ +L A C G V + ++ +M LR + MI L +
Sbjct: 419 LGLLMA---CSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIH 475
Query: 124 ---IRPDEVTYVGVLSACTHNGN 143
IRPD +L AC +GN
Sbjct: 476 KMEIRPDVFACGALLGACRIHGN 498
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW+ +V ++ G+++ AR F QMPERD V WT M+ Y + REAL L+ M
Sbjct: 168 DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML 227
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPDE T+V +++A MY KCG ++
Sbjct: 228 DKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMD 287
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGVLSACT 139
+A +V M RK TW +MI A + D F + PD VT++ VL+A
Sbjct: 288 RAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 347
Query: 140 HNG 142
H G
Sbjct: 348 HVG 350
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D A Q F M + V W +MI +A LF M + PD
Sbjct: 276 LIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPD 335
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD-----------------KFTWTAMIVG 114
T + +LTAY + G V++ R+ M R + W
Sbjct: 336 GVTFLAVLTAYAH--VGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFE 393
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
L S P P+ ++V + +L+AC +G+
Sbjct: 394 LITSMPLPS---NDVVWGVLLAACRKHGD 419
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W+ ++ Y G +D AR F ++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ S RP+E+T +L A MY KCG+
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTI-----------RPDEVTYVGVLSA 137
+E A+ V+ + D +WT++I G A + P + +PD VT+V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 138 CTHNG 142
CTH G
Sbjct: 430 CTHAG 434
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 46/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ SW +V+GY G ++ AR+ F +M E+D WTAM+ GY++ ++ EAL L+
Sbjct: 146 MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY 205
Query: 61 PEMQ-TSNIRPDEFTIV--------------------RILTAY-------------MYCK 86
MQ N RP+ FT+ I+ A MY K
Sbjct: 206 SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 265
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPF--PTIRPDEVTYVGV 134
CG +++A+ + K++ KD +WT+MI G ++ RP+E T+ GV
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325
Query: 135 LSACT 139
L+AC
Sbjct: 326 LNACA 330
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G ++ A+ P+ D V WT++I G + + EAL F + S +
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPTI 124
PD T V +L+A + G VEK + K + + +T ++ LA S F +
Sbjct: 418 PDHVTFVNVLSACTH--AGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQL 475
Query: 125 ---------RPDEVTYVGVLSACTHNGN 143
+P + + VL C+ GN
Sbjct: 476 KSVISEMPMKPSKFLWASVLGGCSTYGN 503
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 42/124 (33%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
++ W ++ Y G + AR+ F +MP RD W M++GY V
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEV--------------- 164
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
G +E+A+++ +M KD ++WTAM+ G D +
Sbjct: 165 ----------------------GLLEEARKLFDEMTEKDSYSWTAMVTGYVKKD-----Q 197
Query: 126 PDEV 129
P+E
Sbjct: 198 PEEA 201
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 87/215 (40%), Gaps = 76/215 (35%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-------------- 49
K+V++WT +V GY G+++ AR+ F MPER+ +W++MI GY +
Sbjct: 174 KNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWV 233
Query: 50 ----------------VNRFRE-ALTLFPEMQTSNIRPDEFTIVRILTAY---------- 82
N F E AL F M PDEFT+V +L+A
Sbjct: 234 PVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGK 293
Query: 83 -----------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
MY KCGD+ A+ V K+ F W AMI G AI+
Sbjct: 294 QIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAING 353
Query: 120 PF------------PTIRPDEVTYVGVLSACTHNG 142
IRPD +T++ VLSAC H G
Sbjct: 354 KCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRG 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 22/158 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M+ K ++W+ ++ G+ G + AR+ F ++P ++ V WT M+DGY R+ A
Sbjct: 138 MQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAARE 197
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+F M P+ V + Y K G+V +A V + ++ W +MI G +
Sbjct: 198 VFEMM------PERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGY-VQ 250
Query: 119 DPF-------------PTIRPDEVTYVGVLSACTHNGN 143
+ F PDE T V VLSAC G+
Sbjct: 251 NGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGH 288
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 50/130 (38%), Gaps = 39/130 (30%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DVI T +++ Y G V AR F MPER+ V W AMI GYLR
Sbjct: 79 SDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRN------------- 125
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
GD E A V KM K + TW+ MI G A + T
Sbjct: 126 ------------------------GDTESAYLVFEKMQGKTQVTWSQMIGGFARNGDIAT 161
Query: 124 IRP--DEVTY 131
R DEV +
Sbjct: 162 ARRLFDEVPH 171
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G + AR F E++ W AMI G+ + E L F M+ SNIR
Sbjct: 312 SGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIR 371
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T + +L+A + G V +A V+ KM
Sbjct: 372 PDGITFLTVLSACAH--RGLVTEALEVISKM 400
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 58/189 (30%), Positives = 89/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV SWT +++GY G + AR+ F +MPER+ V W AMI GY + ++ EAL LF
Sbjct: 314 MERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELF 373
Query: 61 PEM-QTSNIRPDEFTIVRILTAY----------------------------------MYC 85
M + P E T+V +L+A MY
Sbjct: 374 HNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYA 433
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVG 133
KCG ++ A ++ M K+ +W +MI L + D ++PD +T++G
Sbjct: 434 KCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIG 493
Query: 134 VLSACTHNG 142
VLSAC++ G
Sbjct: 494 VLSACSYGG 502
Score = 80.1 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ ++ Y+ G + ARQ F + +D V WT MI+GY R N EA+ LF
Sbjct: 184 DSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNS 243
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +S+++P+E T++ +L+A MY KCG
Sbjct: 244 MLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGC 303
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ A+ + M R+D F+WT+++ G A
Sbjct: 304 LTTAREIFNNMERRDVFSWTSLLNGYA 330
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW ++ GY+ G + AR+ F MP R+ V WT +I Y ++ + EA+ +F MQ
Sbjct: 137 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 196
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I PD ++ +L+A MY KCG V+
Sbjct: 197 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVK 256
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTIR--------PDEVTYVGVLSACT 139
KA V M +K TWT MI G A+ S+ R P+++T++ VLS C+
Sbjct: 257 KALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCS 316
Query: 140 HNG 142
H G
Sbjct: 317 HVG 319
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY ++EAL LF +
Sbjct: 154 HRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 213
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A +Y KCG+
Sbjct: 214 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGE 273
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A + + KD +W +I G + + P++VT + +L A
Sbjct: 274 LETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 333
Query: 138 CTHNG 142
C H G
Sbjct: 334 CAHLG 338
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F +P +D + W +I GY +N ++EAL LF EM S P+
Sbjct: 264 LIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 323
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL A MY KCGD+E A +V
Sbjct: 324 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQV 383
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+L K +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 384 FNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSG 441
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F + + W AMI G+ R + +F M+ + I
Sbjct: 365 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIE 424
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M + K T + MI L S F
Sbjct: 425 PDDITFVGLLSACSH--SGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 482
Query: 123 -------TIRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC +GN E+F N
Sbjct: 483 EEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQN 520
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V W +++ Y + A+ F MP+R+ + WTA+I GY +NR +A+ +F M
Sbjct: 175 RNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTM 234
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q N+ PDE T++ +L+A MY K G++
Sbjct: 235 QLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNI 294
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLSAC 138
++A + M K TWT MI GLA+ + F ++P+E+T++ VLSAC
Sbjct: 295 KRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPNEITFIAVLSAC 354
Query: 139 THNG 142
+H G
Sbjct: 355 SHVG 358
>gi|242077724|ref|XP_002448798.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
gi|241939981|gb|EES13126.1| hypothetical protein SORBIDRAFT_06g033370 [Sorghum bicolor]
Length = 577
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+VISWT ++ + G R F +MPER+ V W ++ Y R RF +AL +F
Sbjct: 239 MPVKNVISWTTMIRALSDAGDFAGMRGLFDRMPERNLVSWNCILSSYTRHGRFWQALQMF 298
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
P M + PD FT+V +L+A MY C
Sbjct: 299 PRMLLEGLNPDSFTVVSVLSACENLRKLRLGRWIHANLVTPALQVHAEVGTALVEMYAMC 358
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVL 135
GDV +A V KM KD F+W MI LA+ F +R P+ T++GVL
Sbjct: 359 GDVARAFVVFLKMYSKDVFSWNVMIRALAVHRRADDALRLFGVMRKQGFGPNHFTFMGVL 418
Query: 136 SACTH 140
AC +
Sbjct: 419 LACRY 423
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS Y+ G V AR+ F M RD V W AM+ Y+R A LF M N+
Sbjct: 188 MVSVYVRAGDVTSAREVFDAMETRDVVSWNAMLTAYVRTADIVAAKELFAAMPVKNV-IS 246
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF---------- 121
T++R L+ GD + + +M ++ +W ++ F
Sbjct: 247 WTTMIRALS-----DAGDFAGMRGLFDRMPERNLVSWNCILSSYTRHGRFWQALQMFPRM 301
Query: 122 --PTIRPDEVTYVGVLSAC 138
+ PD T V VLSAC
Sbjct: 302 LLEGLNPDSFTVVSVLSAC 320
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 14/141 (9%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +++ Y+ RG + AR+ F ++ L M+ Y+R A +F M+T ++
Sbjct: 155 SSLLAFYVARGSLGDARRVFDGFRDKSIGLSNRMVSVYVRAGDVTSAREVFDAMETRDV- 213
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR---- 125
+ +LTAY+ + D+ A+ + M K+ +WT MI L+ + F +R
Sbjct: 214 ---VSWNAMLTAYV--RTADIVAAKELFAAMPVKNVISWTTMIRALSDAGDFAGMRGLFD 268
Query: 126 --PDE--VTYVGVLSACTHNG 142
P+ V++ +LS+ T +G
Sbjct: 269 RMPERNLVSWNCILSSYTRHG 289
>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
Length = 596
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 20/160 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KDVISW ++SGY G +D A F QMPE++Y W A+I GY+ + A F
Sbjct: 216 ISKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SD 119
M P+ ++ I Y KCGDV+ A ++ ++ +KD T+ AMI A S
Sbjct: 276 DAM------PERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQ 329
Query: 120 P-------------FPTIRPDEVTYVGVLSACTHNGNETF 146
P + I+PD++T V+SAC+ G+ F
Sbjct: 330 PRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRF 369
Score = 82.4 bits (202), Expect = 5e-14, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW +++GY G VD A + F Q+ ++D + + AMI + + ++ R+AL LF
Sbjct: 278 MPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLF 337
Query: 61 PEM--QTSNIRPDEFTIVRILTAY---------------------------------MYC 85
EM +NI+PD+ T+ +++A +Y
Sbjct: 338 SEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYA 397
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
KCG V+KA + + +KD ++AMI G I+ I P+ T+ G
Sbjct: 398 KCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTG 457
Query: 134 VLSACTHNG 142
+L+AC H G
Sbjct: 458 LLTACNHAG 466
Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 6/105 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G ++ A++ F ++ E++ V W +++ G+L+ EA +F ++ +
Sbjct: 163 TALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQIS----K 218
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
D + +++ Y K GD+++A + ++M K+ +W A+I G
Sbjct: 219 KDVISWNSMISG--YAKIGDMDRACVLFQQMPEKNYSSWNALISG 261
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VI T ++ Y+ +D AR+ F +MP RD V W+ MI GY R E+L LF M
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +N +P+E T+V +L+A MY KCG V
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPT--------IRPDEVTYVGVLSAC 138
+A+ V +M +K W +MI GLA++ D ++P+E+T++ +L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 139 THNG 142
TH G
Sbjct: 422 THAG 425
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 44/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++GY G V+ AR+ F MP + W +MI Y F+EALTLF
Sbjct: 139 MPIKDPIPMNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLF 198
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
+M P+ TI + + MY KC
Sbjct: 199 DQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCR 258
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
+++A+R +M R+D W+ MI G + + P ++ +P+EVT VGVLS
Sbjct: 259 AIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLS 318
Query: 137 ACTHNGNE 144
AC G++
Sbjct: 319 ACAQLGSD 326
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRP 70
++ Y G V AR F +M ++ + W +MI G L +N F E A+ L+ EM ++P
Sbjct: 351 LIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRG-LALNGFAEDAIALYGEMVGDGVQP 409
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105
+E T + +LTA + G V+K ++M +K+K
Sbjct: 410 NEITFLALLTACTH--AGLVDKGMAFFQEM-KKNK 441
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VI T ++ Y+ +D AR+ F +MP RD V W+ MI GY R E+L LF M
Sbjct: 242 QNVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERM 301
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +N +P+E T+V +L+A MY KCG V
Sbjct: 302 KATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHV 361
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPT--------IRPDEVTYVGVLSAC 138
+A+ V +M +K W +MI GLA++ D ++P+E+T++ +L+AC
Sbjct: 362 ARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTAC 421
Query: 139 THNG 142
TH G
Sbjct: 422 THAG 425
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 44/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I ++ GY G V+ AR+ F MP + W +MI Y F+EALTLF
Sbjct: 139 MPIKDPIPMNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLF 198
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
+M P+ TI + + MY KC
Sbjct: 199 DQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCR 258
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
+++A+R +M R+D W+ MI G + + P ++ +P+EVT VGVLS
Sbjct: 259 AIDEARREFDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLS 318
Query: 137 ACTHNGNE 144
AC G++
Sbjct: 319 ACAQLGSD 326
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRP 70
++ Y G V AR F +M ++ + W +MI G L +N F E A+ L+ EM ++P
Sbjct: 351 LIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRG-LALNGFAEDAIALYGEMVGDGVQP 409
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105
+E T + +LTA + G V+K ++M +K+K
Sbjct: 410 NEITFLALLTACTH--AGLVDKGMAFFQEM-KKNK 441
>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
Length = 1822
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V+ G VD AR F MP+RD+V W+AMI GY+ V R REAL LF EM
Sbjct: 1384 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 1443
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ E T+V +LTA MY KCG V
Sbjct: 1444 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVV 1503
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V M ++ +TWT+ + GLA++ I+P+ V++V VL C+
Sbjct: 1504 TAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCS 1563
Query: 140 HNG 142
G
Sbjct: 1564 MAG 1566
>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
gi|194690792|gb|ACF79480.1| unknown [Zea mays]
Length = 617
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V+ G VD AR F MP+RD+V W+AMI GY+ V R REAL LF EM
Sbjct: 179 DVVCVTAMVAALAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEML 238
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ E T+V +LTA MY KCG V
Sbjct: 239 SAGTTVGEATLVSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVV 298
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V M ++ +TWT+ + GLA++ I+P+ V++V VL C+
Sbjct: 299 TAMEVFESMAERNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCS 358
Query: 140 HNG 142
G
Sbjct: 359 MAG 361
>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW I+ GYI G VD AR F QMPE++ V W+ MI GY + +L L+
Sbjct: 287 MQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLY 346
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+ I+PDE + I++A MY KC
Sbjct: 347 KTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKC 406
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPF---------PTIRPDEVTYVGVL 135
G++E+A +V + +KD ++ +I A +S+ I+PD V ++GVL
Sbjct: 407 GNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVL 466
Query: 136 SACTHNG 142
+AC H G
Sbjct: 467 TACNHGG 473
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 76/214 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +D +SW +++GY N G+VDIAR+ F +M ER+ + WT+MI GY++ EA LF
Sbjct: 163 MEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLF 222
Query: 61 PEMQTSNIRPDEFTIVRILTAYMY-----------------------------CKCG--- 88
M ++ + + +AYM CK G
Sbjct: 223 ERMPEKDLASWKVMV----SAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMD 278
Query: 89 ----------------------------DVEKAQRVLRKMLRKDKFTWTAMIVGLA-ISD 119
DV+ A+ V +M K+ W+ MI G A
Sbjct: 279 AAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGH 338
Query: 120 PFPT-----------IRPDEVTYVGVLSACTHNG 142
P+ + I+PDE +G++SAC+ G
Sbjct: 339 PYSSLKLYKTFKEQGIKPDETFALGIISACSQLG 372
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 33/132 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V A + F + PE + LWTA+I G+ N++ A F +M NI P FTI
Sbjct: 46 YSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTI 105
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
+L A ++ +CG++ A+++ +M
Sbjct: 106 ASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEE 165
Query: 103 KDKFTWTAMIVG 114
+D +W +MI G
Sbjct: 166 RDAVSWNSMITG 177
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ ++ ++ G++ ARQ F +M ERD V W +MI GY R A LF M+
Sbjct: 136 DLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRME 195
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
N+ + ++ Y+ K GD+ +A+ + +M KD +W M+
Sbjct: 196 ERNV----ISWTSMIQGYV--KAGDLLEARVLFERMPEKDLASWKVMV 237
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F + ++D ++ +I + +A++LF EMQ +NI+
Sbjct: 397 TSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIK 456
Query: 70 PDEFTIVRILTAYMYCKCGD-VEKAQRVLRKML 101
PD + +LTA C G V + +R+ R+M+
Sbjct: 457 PDGVAFLGVLTA---CNHGGLVGEGRRLFRQMI 486
>gi|354805181|gb|AER41600.1| CRR4 [Oryza glaberrima]
Length = 540
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D A + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 171 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 230
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 231 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 290
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CGDV +AQ + KM + TWT MI G A + D ++ D+ ++
Sbjct: 291 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 350
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 351 LAACAHGG 358
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A +F MPER+ V W ++ G+ R+ A +F
Sbjct: 78 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTAWAVF 137
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M + N + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 138 DRMPSRN------AVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 191
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 192 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 251
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 252 ACAQLGS----VEYCN 263
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 52/194 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +V+ W +++GY+ RG D AR+ F +MPER+ WT M+ G+ + + + AL+LF
Sbjct: 191 MPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLF 250
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------------------------------YM 83
+M+ + + D+ +V L+A +M
Sbjct: 251 DQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHM 310
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDE 128
Y CG ++ A +V ++ +++ +W+++I G A + +RPDE
Sbjct: 311 YASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDE 370
Query: 129 VTYVGVLSACTHNG 142
+T++G L+AC+H G
Sbjct: 371 ITFIGALTACSHAG 384
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN---I 68
++ Y + G +D+A + F ++P+R+ V W+++I G+ + EA+ +F M S +
Sbjct: 307 LIHMYASCGVMDLAYKVFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEV 366
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV- 113
RPDE T + LTA + G + R+ + M + D + ++
Sbjct: 367 RPDEITFIGALTACSH--AGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTE 424
Query: 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGNETFV 147
L++ + P ++P+ + +LS C + N+ V
Sbjct: 425 ALSLIESMP-MKPNNAVWGALLSGCRLHKNDEIV 457
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 10 TDIVSGYINRGQ-----VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
T++++ Y N G + AR F +MP+ + V W +++ GY+R F A +F EM
Sbjct: 164 TNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMP 223
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
N+R +TI+ + + G + A + +M R +
Sbjct: 224 ERNVRT--WTIM----VAGFAQNGQCKLALSLFDQMRRAG-------------------V 258
Query: 125 RPDEVTYVGVLSACTHNGNETF 146
D+V V LSAC G+ T
Sbjct: 259 ELDQVALVAALSACAELGDLTL 280
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 46/173 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y N G V A + F +MPE+D V W ++I+G+ + EAL L+ EM I+PD FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTI 225
Query: 76 VRILTA---------------YM------------------YCKCGDVEKAQRVLRKMLR 102
V +L+A YM Y +CG VE+A+ + +M+
Sbjct: 226 VSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 103 KDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSACTHNG 142
K+ +WT++IVGLA++ + + P E+T+VG+L AC+H G
Sbjct: 286 KNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCG 338
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 57/154 (37%), Gaps = 46/154 (29%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTA---------------- 81
+W +I GY + A++L+ EM+ S + PD T +L A
Sbjct: 87 IWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSV 146
Query: 82 -----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP---- 120
++Y CGDV A +V KM KD W ++I G A +
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 121 --------FPTIRPDEVTYVGVLSACTHNGNETF 146
I+PD T V +LSAC G T
Sbjct: 207 LALYTEMDLKGIKPDGFTIVSLLSACAKIGALTL 240
>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Glycine max]
Length = 836
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 87/188 (46%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W +++G + G +++A + F +M ERD V W MI ++V+ F EA+ LF
Sbjct: 393 MPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELF 452
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I D T+V I +A M+ +C
Sbjct: 453 REMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRC 512
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
GD A V ++M ++D WTA I +A+ ++PD+V +V +L
Sbjct: 513 GDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572
Query: 136 SACTHNGN 143
+AC+H G+
Sbjct: 573 TACSHGGS 580
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 80/184 (43%), Gaps = 45/184 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y G+VD+ R+ F M ER+ V WT++I+GY + +EA++LF +M
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMG 223
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + P+ T+V +++A MY KCGD+
Sbjct: 224 EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDIC 283
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSACT 139
A+++ + K+ + ++ L I D RPD+VT + ++AC
Sbjct: 284 AARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343
Query: 140 HNGN 143
G+
Sbjct: 344 QLGD 347
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V + G A F +M +RD WTA I A+ LF EM ++
Sbjct: 503 TALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVK 562
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI------------ 112
PD+ V +LTA + G V++ +++ M +R + M+
Sbjct: 563 PDDVVFVALLTACSH--GGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEA 620
Query: 113 VGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
V L S P I P++V + +L+AC + N
Sbjct: 621 VDLIQSMP---IEPNDVVWGSLLAACRKHKN 648
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 45/146 (30%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA----------------- 81
++ +I GY +A+ L+ +M I PD++T +L+A
Sbjct: 97 MYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAV 156
Query: 82 ----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL--------AI 117
+ Y +CG V+ +++ ML ++ +WT++I G A+
Sbjct: 157 LKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAV 216
Query: 118 SDPF----PTIRPDEVTYVGVLSACT 139
S F + P+ VT V V+SAC
Sbjct: 217 SLFFQMGEAGVEPNPVTMVCVISACA 242
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 47/186 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ SW ++ GY+ G++ A++ F +M ERD V WT +I GY++V F+EAL LF E
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 239
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M + P+EFT+ L A MY KCG+
Sbjct: 240 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 299
Query: 90 VEKAQRVLRKM--LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
++ A +V L+ + W AMI G A+ D F ++ P++VT+V +L
Sbjct: 300 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 359
Query: 136 SACTHN 141
+AC+H
Sbjct: 360 NACSHG 365
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 16 YINRGQVDIARQYFAQMPERDYVL------WTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
Y G++D A + F +Y L W AMI GY + +EA+ LF +M+ +
Sbjct: 294 YAKCGEIDFAAKVF----HDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVS 349
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P++ T V +L A + K VE+ + + M
Sbjct: 350 PNKVTFVALLNACSHGKL--VEEGRGYFKSM 378
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 52/190 (27%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K KDV W+ +VSGY G++ +AR+ F +MP +D V WT ++ GY++ R++EAL LF
Sbjct: 265 KVKDVRVWSVMVSGYARVGEIGMARKLFDEMPNKDLVAWTVLVGGYVQAGRYKEALGLFE 324
Query: 62 EMQTSNIRPDEFTIVRILTA----------------------------------YMYCKC 87
EM+ + + DE T+V +L+A ++Y K
Sbjct: 325 EMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQNGLVSRNARVATSFVHIYAKH 384
Query: 88 GDVEKAQRVLRKMLRKDKFT----WTAMIVGLA----------ISDPFPT--IRPDEVTY 131
G ++ A V R + D+F + AMI GLA + D + ++PD++T+
Sbjct: 385 GCIQTAMDVFRGI--TDEFKTVELFNAMIHGLAHHGYGEKAISLFDKMESLGLQPDDITF 442
Query: 132 VGVLSACTHN 141
VG+L AC+ +
Sbjct: 443 VGILCACSRS 452
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 86/215 (40%), Gaps = 76/215 (35%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-------- 55
KDV+ WT +V GY +G+++ AR+ F MPER+Y +W++M+ GY + E
Sbjct: 179 KDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRI 238
Query: 56 -----------------------ALTLFPEMQTSNIRPDEFTIVRILTAY---------- 82
AL F EM PDEFT+V +L+A
Sbjct: 239 PVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGK 298
Query: 83 -----------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
MY KCGD+ A+ V ++ F W AMI G A++
Sbjct: 299 QMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNG 358
Query: 120 PF------------PTIRPDEVTYVGVLSACTHNG 142
IR D VT++ VLSAC H G
Sbjct: 359 QCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGG 393
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 51/188 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-------------------------- 34
M ++V++W ++ GY+ G A F +MP
Sbjct: 112 MPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTARKFF 171
Query: 35 -------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87
+D V+WT M+DGY + +A +F M P+ V YCK
Sbjct: 172 DKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELM------PERNYFVWSSMVCGYCKK 225
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
GDV +A+ + R++ ++ W +MI G + + F + PDE T V VL
Sbjct: 226 GDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVL 285
Query: 136 SACTHNGN 143
SAC G+
Sbjct: 286 SACAQLGD 293
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
DV T IV+ Y G V AR+ F MPER+ V W AMI GYLR + AL F EM
Sbjct: 85 DVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMP 144
Query: 64 ------------------QTSNIR------PDEFTIVRILTAYM--YCKCGDVEKAQRVL 97
T R P E V I T + Y K G++E A+ V
Sbjct: 145 GKTRVSWSQMIGGFARNGDTLTARKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVF 204
Query: 98 RKMLRKDKFTWTAMIVG 114
M ++ F W++M+ G
Sbjct: 205 ELMPERNYFVWSSMVCG 221
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G + AR F ER+ W AMI G+ + E L MQ SNIR
Sbjct: 317 SGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIR 376
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
D T + +L+A + G + +A V+ KM
Sbjct: 377 LDAVTFITVLSACAH--GGLMSEALEVISKM 405
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW+ +V ++ G+++ AR F QMPERD V WT M+ Y + REAL L+ M
Sbjct: 136 DVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTML 195
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPDE T+V +++A MY KCG ++
Sbjct: 196 DKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMD 255
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGVLSACT 139
+A +V M RK TW +MI A + D F + PD VT++ VL+A
Sbjct: 256 RAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYA 315
Query: 140 HNG 142
H G
Sbjct: 316 HVG 318
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D A Q F M + V W +MI +A LF M + PD
Sbjct: 244 LIDMYAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPD 303
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD-----------------KFTWTAMIVG 114
T + +LTAY + G V++ R+ M R + W
Sbjct: 304 GVTFLAVLTAYAH--VGLVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFE 361
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
L S P P+ ++V + +L+AC +G+
Sbjct: 362 LITSMPLPS---NDVVWGVLLAACRKHGD 387
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SWT ++ GY G++D A + F MP R+ V W MI G+L R+ EALT F
Sbjct: 239 MSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFF 298
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M + + P+E +V +L+A MY K
Sbjct: 299 CNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAK 358
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CG ++ A RV + ++D ++T+MI GL+ D + P+E+T +GV
Sbjct: 359 CGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGV 418
Query: 135 LSACTHNG 142
L+ C+H+G
Sbjct: 419 LNGCSHSG 426
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 72/175 (41%), Gaps = 36/175 (20%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++D A + F + +RD + +T+MI G ++AL +F +M N+
Sbjct: 350 TALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVM 409
Query: 70 PDEFTIVRILTAYMYC----------------------------------KCGDVEKAQR 95
P+E TI+ +L + + G +E+A
Sbjct: 410 PNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALE 469
Query: 96 VLRKM-LRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVIN 149
V++ M + D W A++ I + ++++G L + HNG E + N
Sbjct: 470 VVKTMPMEPDIVIWRALLSASRIHHNV-NLGEQIISHIGQLKSSDHNGGEVLLSN 523
>gi|296089328|emb|CBI39100.3| unnamed protein product [Vitis vinifera]
Length = 483
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 24/163 (14%)
Query: 4 KDVISWTDIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
KDV +V N+ G V+ AR+ F QMPE++ V W+ MI GY + N F +A+ LF
Sbjct: 100 KDVYVQNSLVHMGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKV 159
Query: 63 MQTSNIRPDE--------FTIVRILTAY---MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
+Q+ +R +E T+ IL MY +CG ++KA V + +D +WTA+
Sbjct: 160 LQSQGVRANETVMVIKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTAL 219
Query: 112 IVGLAIS-------DPFPT-----IRPDEVTYVGVLSACTHNG 142
I GLA+ F T + P ++T+ VLSAC+H G
Sbjct: 220 IAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGG 262
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW ++SGY G V A++ F MP RD V W AM+ Y V + E L +F
Sbjct: 232 MEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVF 291
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M S +PD FT+V +L+A MY K
Sbjct: 292 NKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG ++KA V R ++D TW ++I L++ + +P+ +T++GV
Sbjct: 352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Query: 135 LSACTHNG 142
LSAC H G
Sbjct: 412 LSACNHVG 419
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV +V+ Y G +IAR+ +MP RD V W +++ YL EA LF EM+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------I 117
N+ F I Y G V++A+ V M +D +W AM+ A +
Sbjct: 234 ERNVESWNFMISG------YAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEV 287
Query: 118 SDPF------PTIRPDEVTYVGVLSACTHNGN 143
+ F T +PD T V VLSAC G+
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGS 319
>gi|242063508|ref|XP_002453043.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
gi|241932874|gb|EES06019.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
Length = 578
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 52/190 (27%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K KD W+ ++SGY G++ +AR F +MP +D V WT ++ GY++ R +EAL LF
Sbjct: 266 KTKDARIWSVMMSGYARAGEIYMARNLFDEMPNKDLVAWTVLVGGYVQAGRCKEALQLFE 325
Query: 62 EMQTSNIRPDEFTIVRILTA----------------------------------YMYCKC 87
EM+ + + DE T+V +L+A ++Y K
Sbjct: 326 EMEATGLEADEVTVVTVLSACVQHGAIGLAKRLHRRVNQNGLVSRNARVATSFVHIYAKH 385
Query: 88 GDVEKAQRVLRKMLRKDKFT----WTAMIVGLA----------ISDPFPT--IRPDEVTY 131
G ++ A V R + D+F + AMI GLA + D T ++PD++T+
Sbjct: 386 GCIQTAMDVFRGV--TDEFKTVELFNAMIHGLAHHGYGEKAISLFDEMETLELQPDDITF 443
Query: 132 VGVLSACTHN 141
VGVL AC+H+
Sbjct: 444 VGVLCACSHS 453
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 68/201 (33%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVL--WT----------------- 41
M D +S+ ++S Y+ G V+ A F M E + L WT
Sbjct: 159 MPASDTVSFNTLISSYVQSGCVERALGVFRDMVEGGFRLDEWTITALLGACAGLGDLMVA 218
Query: 42 -----------------------AMIDGYLR---VNRFREALTLFPEMQTSNIRPDEFTI 75
++D Y++ V R A LF D+
Sbjct: 219 KAAHGFASRALRHTLFDSAEVVIGLVDMYVKCGAVQLSRRAFNLFG---------DKTKD 269
Query: 76 VRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT 123
RI + M Y + G++ A+ + +M KD WT ++ G L + +
Sbjct: 270 ARIWSVMMSGYARAGEIYMARNLFDEMPNKDLVAWTVLVGGYVQAGRCKEALQLFEEMEA 329
Query: 124 --IRPDEVTYVGVLSACTHNG 142
+ DEVT V VLSAC +G
Sbjct: 330 TGLEADEVTVVTVLSACVQHG 350
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 89/196 (45%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++SGY GQ+ A F +MPERD W A+I GY + F EAL+LF
Sbjct: 217 MTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLF 276
Query: 61 PEMQT-------SNIRPDEFTIVRILTAY------------------------------- 82
M RP++ T V L+A
Sbjct: 277 RRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNAL 336
Query: 83 --MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT--------------IRP 126
MY KCG +++A+RV + L + +W +MI LA+ ++P
Sbjct: 337 VDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTCGSGVKP 396
Query: 127 DEVTYVGVLSACTHNG 142
DEVT++G+L+ACTH G
Sbjct: 397 DEVTFIGLLNACTHGG 412
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++++SW ++G I G+V++A F QMP R V WT +IDGY R N+ +ALTLF
Sbjct: 198 MQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLF 257
Query: 61 PEM-QTSNIRPDEFTIVRILTAY----------------------------------MYC 85
+M + I P E T++ I A +Y
Sbjct: 258 RKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITNALLDLYA 317
Query: 86 KCGDVEKAQRVLRKM--LRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTY 131
KCG + R +++ R++ +WT+ I G A++ + F + +RP+ VT+
Sbjct: 318 KCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHVTF 377
Query: 132 VGVLSACTHNG 142
+GVLSAC+H G
Sbjct: 378 LGVLSACSHGG 388
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 16 YINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y G + ++F ++P+ R+ V WT+ I G+ REAL F M+ + +RP+
Sbjct: 316 YAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGLRPNHV 375
Query: 74 TIVRILTAYMYCKCGD-VEKAQRVLRKMLR 102
T + +L+A C G VE+ KM++
Sbjct: 376 TFLGVLSA---CSHGGLVEEGINFFVKMVK 402
>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
Length = 539
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 90/186 (48%), Gaps = 47/186 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ SW ++ GY+ G++ A++ F +M ERD V WT +I GY++V F+EAL LF E
Sbjct: 95 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 154
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M + P+EFT+ L A MY KCG+
Sbjct: 155 MLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGE 214
Query: 90 VEKAQRVLRKM--LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
++ A +V L+ + W AMI G A+ D F ++ P++VT+V +L
Sbjct: 215 IDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALL 274
Query: 136 SACTHN 141
+AC+H
Sbjct: 275 NACSHG 280
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 16 YINRGQVDIARQYFAQMPERDYVL------WTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
Y G++D A + F +Y L W AMI GY + +EA+ LF +M+ +
Sbjct: 209 YAKCGEIDFAAKVF----HDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVS 264
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P++ T V +L A + K VE+ + + M
Sbjct: 265 PNKVTFVALLNACSHGKL--VEEGRGYFKSM 293
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 86/180 (47%), Gaps = 49/180 (27%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
I+ Y G++ AR+ F +MPE +D V WTAMIDG++R AL F MQ N
Sbjct: 178 IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN 237
Query: 68 IRPDEFTIVRILTA---------------------------------YMYCKCGDVEKAQ 94
+RP+EFTIV +L+A MY +CG +++AQ
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 297
Query: 95 RVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
V +M +D T+ MI GL+++ +RP VT+VGVL+AC+H G
Sbjct: 298 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGG 357
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 49/170 (28%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+D A + F + L+TA+IDG++ + EA+ L+ M +I PD + + IL A
Sbjct: 87 IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKA 146
Query: 82 ---------------------------------YMYCKCGDVEKAQRVLRKM----LRKD 104
+Y KCG++ A+RV +M + KD
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 206
Query: 105 KFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
WTAMI G ++ +RP+E T V VLSAC+ G
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 256
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 52/194 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +V+ W +++GY+ RG D AR+ F +MPER+ WT M+ G+ + + + AL+LF
Sbjct: 191 MPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLF 250
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------------------------------YM 83
+M+ + + D+ +V L+A +M
Sbjct: 251 DQMRRAGVELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHM 310
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDE 128
Y CG ++ A ++ ++ +++ +W+++I G A + +RPDE
Sbjct: 311 YASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDE 370
Query: 129 VTYVGVLSACTHNG 142
+T++G L+AC+H G
Sbjct: 371 ITFIGALTACSHAG 384
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN---I 68
++ Y + G +D+A + F ++P+R+ V W+++I G+ + EA+ +F M S +
Sbjct: 307 LIHMYASCGAMDLAYKLFEEIPQRNTVSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEV 366
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--------------DKFTWTAMIV- 113
RPDE T + LTA + G + R+ + M + D + ++
Sbjct: 367 RPDEITFIGALTACSH--AGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTE 424
Query: 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGNETFV 147
L++ + P ++P+ + +LS C + N+ V
Sbjct: 425 ALSLIESMP-MKPNNAVWGALLSGCRLHKNDEIV 457
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 30/142 (21%)
Query: 10 TDIVSGYINRGQ---VDIARQY--FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
T++++ Y N G D+ R F +MP+ + V W +++ GY+R F A +F EM
Sbjct: 164 TNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMP 223
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
N+R +TI+ + + G + A + +M R +
Sbjct: 224 ERNVRT--WTIM----VAGFAQNGQCKLALSLFDQMRR-------------------AGV 258
Query: 125 RPDEVTYVGVLSACTHNGNETF 146
D+V V LSAC G+ T
Sbjct: 259 ELDQVALVAALSACAELGDLTL 280
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++GY+ G ++ A F QMP +D + WT MI GY + R+REA+ +F
Sbjct: 961 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 1020
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I PDE T+ +++A MY KC
Sbjct: 1021 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 1080
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E+A V + +K+ F W ++I GLA +++P+ VT+V V
Sbjct: 1081 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 1140
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 1141 TACTHAG 1147
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 908 TTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 965
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
E T ++ YM G++E+A+ + +M KD +WT MI G + + +
Sbjct: 966 --EATSNCLINGYM--GLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFY 1021
Query: 122 ----PTIRPDEVTYVGVLSACTHNG 142
I PDEVT V+SAC H G
Sbjct: 1022 KMMEEGIIPDEVTMSTVISACAHLG 1046
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 1066 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 1125
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+++P+ T V + TA + G V++ +R+ R M+
Sbjct: 1126 MESVKPNAVTFVSVFTACTH--AGLVDEGRRIYRSMI 1160
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K ++ T ++SGY G V AR F +M E+D V W+AMI GY + EAL LF
Sbjct: 278 LPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLF 337
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I PD+ T++ +++A MY KC
Sbjct: 338 NEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKC 397
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++ KA+ V M RK+ +W++MI A+ + I P+ VT++GVL
Sbjct: 398 GNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVL 457
Query: 136 SACTHNG 142
AC+H G
Sbjct: 458 YACSHAG 464
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 76/216 (35%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + +++ Y G++ AR F +M RD V W MIDGY + + L L+ E
Sbjct: 148 HADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEE 207
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+TS PD + +L+A MY CG
Sbjct: 208 MKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGA 267
Query: 90 -------------------------------VEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
V+ A+ + +M+ KD W+AMI G A S
Sbjct: 268 MHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAES 327
Query: 119 -DPFPTIR-----------PDEVTYVGVLSACTHNG 142
P ++ PD++T + V+SAC + G
Sbjct: 328 YQPLEALQLFNEMQRRRIVPDQITMLSVISACANVG 363
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 22/148 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + AR+ F MP ++ + W++MI+ + A+ LF M+ NI P+
Sbjct: 390 LIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPN 449
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI------------VG 114
T + +L Y G VE+ Q+ M+ + + + + M+ +
Sbjct: 450 GVTFIGVL--YACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAME 507
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNG 142
L + PFP P+ + + ++SAC ++G
Sbjct: 508 LIETMPFP---PNVIIWGSLMSACQNHG 532
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVT 130
MY CG + A+ + KM +D TW MI G + + + + PD +
Sbjct: 160 MYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAII 219
Query: 131 YVGVLSACTHNGNETF 146
VLSAC H GN ++
Sbjct: 220 LCTVLSACAHAGNLSY 235
>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 515
Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 50/188 (26%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N++V+ WT +VSGY + G V+ AR F +MP R+ ++AM+ GY+R F E + LF E
Sbjct: 148 NRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRE 207
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
++ + ++ + +V +L A Y
Sbjct: 208 LKKKDKGCACLKFNGALLVSVLNACTMVGAFEEGKWIHSYVEENGLEYDLELGTALIDFY 267
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG V+ A++V KM KD TW+AMI+GLAI+ + F + +P+EVT+V
Sbjct: 268 MKCGWVKGAEKVFNKMPVKDVATWSAMILGLAINGNNKMALELFEKMEKVGPKPNEVTFV 327
Query: 133 GVLSACTH 140
GVL+AC H
Sbjct: 328 GVLTACNH 335
Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 20/140 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV + +++ + + +ARQ F + R+ V WT+++ GY EA +F +
Sbjct: 117 SSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDK 176
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M N E + +++ Y+ + G + ++ R++ +KDK G A
Sbjct: 177 MPLRN----EASYSAMVSGYV--RNGFFSEGVQLFRELKKKDK--------GCA------ 216
Query: 123 TIRPDEVTYVGVLSACTHNG 142
++ + V VL+ACT G
Sbjct: 217 CLKFNGALLVSVLNACTMVG 236
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++GY+ G ++ A F QMP +D + WT MI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I PDE T+ +++A MY KC
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E+A V + +K+ F W ++I GLA +++P+ VT+V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 396 TACTHAG 402
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 70/145 (48%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G + AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 163 TTLIDFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 220
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
E T ++ YM G++E+A+ + +M KD +WT MI G + + +
Sbjct: 221 --EATSNCLINGYM--GLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFY 276
Query: 122 ----PTIRPDEVTYVGVLSACTHNG 142
I PDEVT V+SAC H G
Sbjct: 277 KMMEEGIIPDEVTMSTVISACAHLG 301
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+++P+ T V + TA + G V++ +R+ R M+
Sbjct: 381 MESVKPNAVTFVSVFTACTH--AGLVDEGRRIYRSMI 415
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F MP RD V + +M+ GY++ EAL +F
Sbjct: 242 MPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVF 301
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PDE T+V +L+A MY K
Sbjct: 302 YDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSK 361
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGV 134
CG +++A V + K W AMI GLA+ I+PD +T+VGV
Sbjct: 362 CGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGV 421
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 422 LNACSHSG 429
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 20/155 (12%)
Query: 2 KNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K++ISW ++ GY R VDIA + FA+MPE+D + W ++IDGY++ R +A LF
Sbjct: 180 EKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
M R D T ++ Y K G V KA+ + M +D + +M+ G +
Sbjct: 240 DVMP----RRDVVTWATMIDG--YAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKY 293
Query: 119 -----------DPFPTIRPDEVTYVGVLSACTHNG 142
+ + PDE T V VLSA G
Sbjct: 294 HMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLG 328
>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
[Vitis vinifera]
Length = 523
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+I+ I++ + G+ D A++ F +M RD V W +MI G +R RF EAL F EM
Sbjct: 87 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 146
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
SN+ PD FT ++ +Y KCG +
Sbjct: 147 NSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRIN 206
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A++V + D W +MI GLAI ++ PD +T++G+L+AC+
Sbjct: 207 TAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS 266
Query: 140 HNG 142
H G
Sbjct: 267 HCG 269
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G+++ A++ F + D +W +MI+G +A+ +F +M+ ++
Sbjct: 193 SALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVS 252
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
PD T + ILTA + CG VE+ +R M R + + ++G A + +
Sbjct: 253 PDSITFIGILTACSH--CGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEA 310
Query: 121 FPTIR-----PDEVTYVGVLSAC 138
+ I+ PD V + +LSAC
Sbjct: 311 YAMIKAMPMEPDIVIWRALLSAC 333
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
L T+++ Y + A L EM D T I+ + M K G+ + A+RV R
Sbjct: 57 LITSLVSTYAHCDCLDLAHQLLDEMPYWGF--DLITANLIIASLM--KVGEFDFAKRVFR 112
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
KMLR+D TW +MI G ++ F + PD T+ V++ C G+
Sbjct: 113 KMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGS 169
>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
Length = 562
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+I+ I++ + G+ D A++ F +M RD V W +MI G +R RF EAL F EM
Sbjct: 126 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 185
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
SN+ PD FT ++ +Y KCG +
Sbjct: 186 NSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRIN 245
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A++V + D W +MI GLAI ++ PD +T++G+L+AC+
Sbjct: 246 TAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS 305
Query: 140 HNG 142
H G
Sbjct: 306 HCG 308
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G+++ A++ F + D +W +MI+G +A+ +F +M+ ++
Sbjct: 232 SALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVS 291
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
PD T + ILTA + CG VE+ +R M R + + ++G A + +
Sbjct: 292 PDSITFIGILTACSH--CGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEA 349
Query: 121 FPTIR-----PDEVTYVGVLSAC 138
+ I+ PD V + +LSAC
Sbjct: 350 YAMIKAMPMEPDIVIWRALLSAC 372
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
L T+++ Y + A L EM D T I+ + M K G+ + A+RV R
Sbjct: 96 LITSLVSTYAHCDCLDLAHQLLDEMPYWGF--DLITANLIIASLM--KVGEFDFAKRVFR 151
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
KMLR+D TW +MI G ++ F + PD T+ V++ C G+
Sbjct: 152 KMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGS 208
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++GY+ G ++ A F QMP +D + WT MI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I PDE T+ +++A MY KC
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E+A V + +K+ F W ++I GLA +++P+ VT+V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 396 TACTHAG 402
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 163 TTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 220
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
E T ++ YM G++E+A+ + +M KD +WT MI G + + +
Sbjct: 221 --EATSNCLINGYM--GLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFY 276
Query: 122 ----PTIRPDEVTYVGVLSACTHNG 142
I PDEVT V+SAC H G
Sbjct: 277 KMMEEGIIPDEVTMSTVISACAHLG 301
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+++P+ T V + TA + G V++ +R+ R M+
Sbjct: 381 MESVKPNAVTFVSVFTACTH--AGLVDEGRRIYRSMI 415
>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 52/194 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++SW I+ GY G++ IA F MPER+ V W +I GYL+ N L LF
Sbjct: 208 MSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVLMLF 267
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M +R ++ TIV +L+A MY +C
Sbjct: 268 RKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVHGFIVKKFSSMNVIHETTLIDMYNRC 327
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-SDP------------------FPTIRPDE 128
VE A+R+ K++R++ W AMI+G + +P ++ PDE
Sbjct: 328 HKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPDDGLELFKDMVDRAGLGKRDSVHPDE 387
Query: 129 VTYVGVLSACTHNG 142
VT++GVL AC G
Sbjct: 388 VTFIGVLCACARAG 401
>gi|302818558|ref|XP_002990952.1| hypothetical protein SELMODRAFT_132593 [Selaginella moellendorffii]
gi|300141283|gb|EFJ07996.1| hypothetical protein SELMODRAFT_132593 [Selaginella moellendorffii]
Length = 357
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 85/190 (44%), Gaps = 49/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + D ISWT I+SGY G++D AR+ F QMP+RD V W AMI GY + R EAL LF
Sbjct: 69 MPHPDPISWTTIISGYNKLGEIDCAREIFDQMPDRDTVAWNAMISGYCQSARPSEALDLF 128
Query: 61 P-----------------------------------EMQTSNIRPDEFTIVRILTAYMYC 85
E+ S +RPD+ L + MY
Sbjct: 129 KLMIVEGINPVRETFVAAIDACAAVPAEREGKLVHVELLASGVRPDDAQAHNALLS-MYG 187
Query: 86 KCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAIS----DPFPTIR--------PDEVTYV 132
+ G +E A+ + M +D+ TWTAM+ A S D PD VT++
Sbjct: 188 RMGHLEVARDLFDAMESSRDRVTWTAMLAAYAQSGHLRDALGIFHAMVLHGEAPDGVTFI 247
Query: 133 GVLSACTHNG 142
VL+AC H G
Sbjct: 248 NVLAACAHAG 257
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDI--ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
+ +KD SWT I++ YI D+ AR F ++ + + + +I Y + + +EA
Sbjct: 5 IASKDSTSWTTIIAAYIGGSDDDLREARNLFDRVQDPEAATYNVIISAYAQKGQMQEARR 64
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
L M PD + I++ Y K G+++ A+ + +M +D W AMI G S
Sbjct: 65 LLARMP----HPDPISWTTIISGYN--KLGEIDCAREIFDQMPDRDTVAWNAMISGYCQS 118
Query: 119 -------DPF-----PTIRPDEVTYVGVLSACT 139
D F I P T+V + AC
Sbjct: 119 ARPSEALDLFKLMIVEGINPVRETFVAAIDACA 151
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SWT ++ G+ G D A F MP + W A+I Y + + R AL+LF
Sbjct: 335 MSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLF 394
Query: 61 PEMQTS-NIRPDEFTIVRILTAY---------------------------------MYCK 86
EMQ S + +PDE T++ L A MY K
Sbjct: 395 HEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAK 454
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
CG++ KA V + RKD + W+AMI LA+ D F + I+P+ VT+ +
Sbjct: 455 CGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNI 514
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 515 LCACNHAG 522
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ +++ Y + G D+A + F MP +D V W AMI+ + +AL LF E
Sbjct: 205 SSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQE 264
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ +++P+ T+V +L+A MY KCG
Sbjct: 265 MEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGC 324
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ A+ + KM KD +WT M+ G A
Sbjct: 325 INDAKDLFNKMSEKDIVSWTTMLDGHA 351
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DVI W ++ G+ G +++ + F QM +R V W +MI G + R EAL LF
Sbjct: 168 MLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELF 227
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM PD+ T+V IL YCK
Sbjct: 228 REMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCK 287
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-------SDPFPT-----IRPDEVTYVGV 134
CG +E A RV +M +K+ +W AMI GL +D F +RP++ T+VGV
Sbjct: 288 CGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGV 347
Query: 135 LSACTHNG 142
LS C H G
Sbjct: 348 LSCCAHAG 355
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 33/124 (26%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI--------- 75
A F Q + +L+ +MI GY +L LF +M+ I PDEFT
Sbjct: 60 ANLVFHQTQNPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSG 119
Query: 76 ------------------------VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
+RI +Y CG +E A++V +ML +D W M
Sbjct: 120 ICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMM 179
Query: 112 IVGL 115
I G
Sbjct: 180 IRGF 183
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 4 KDVIS-WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+D IS +V Y G ++ A + F +MP+++ V W AMI G + LF E
Sbjct: 272 RDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISGLTFNGKGELGADLFEE 331
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
M +RP++ T V +L+ + G VE+ + + M
Sbjct: 332 MINKGVRPNDATFVGVLSCCAH--AGLVERGRNLFTSM 367
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 49/143 (34%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ Y + G+++ A++ F +M +RD ++W MI G+
Sbjct: 148 IIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGF------------------------ 183
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPTIR-- 125
CK GD+E R+ R+M + +W +MI GL S + R
Sbjct: 184 -------------CKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREM 230
Query: 126 ------PDEVTYVGVLSACTHNG 142
PD+ T V +L C G
Sbjct: 231 WDHGFEPDDATVVTILPVCARLG 253
>gi|297734518|emb|CBI15765.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+I+ I++ + G+ D A++ F +M RD V W +MI G +R RF EAL F EM
Sbjct: 114 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 173
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
SN+ PD FT ++ +Y KCG +
Sbjct: 174 NSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRIN 233
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A++V + D W +MI GLAI ++ PD +T++G+L+AC+
Sbjct: 234 TAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACS 293
Query: 140 HNG 142
H G
Sbjct: 294 HCG 296
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G+++ A++ F + D +W +MI+G +A+ +F +M+ ++
Sbjct: 220 SALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVS 279
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PD T + ILTA + CG VE+ +R M R
Sbjct: 280 PDSITFIGILTACSH--CGLVEQGRRYFDLMRRH 311
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
L T+++ Y + A L EM D T I+ + M K G+ + A+RV R
Sbjct: 84 LITSLVSTYAHCDCLDLAHQLLDEMPYWGF--DLITANLIIASLM--KVGEFDFAKRVFR 139
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
KMLR+D TW +MI G ++ F + PD T+ V++ C G+
Sbjct: 140 KMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGS 196
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 48/185 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DVI++T +++GY+ G + ARQ F + + D V WTAMI GY++ +A+ +F M
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ RP+ FT+ +L+A MY K G +
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426
Query: 92 KAQRVLRKMLR--KDKFTWTAMIVGLA----------ISDPFPT--IRPDEVTYVGVLSA 137
A++V +LR +D +WT+MI+ LA + + T I+PD +TYVGVLSA
Sbjct: 427 GARKVFN-LLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485
Query: 138 CTHNG 142
CTH G
Sbjct: 486 CTHGG 490
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 41/183 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K SW I+SGY +G+++ A Q F +P RD V WT +I GY ++ RF +A+ +F
Sbjct: 36 MPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIF 95
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M + P +FT+ +L + MY K
Sbjct: 96 VDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKT 155
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI--------VGLAISDPFPTIRPDEVTYVGVLSACT 139
GD++ A+ V +M ++ +W AMI V LA++ D V++ +++ C
Sbjct: 156 GDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCN 215
Query: 140 HNG 142
+G
Sbjct: 216 QHG 218
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK ++ SW ++S ++N G+VD+A F + ERD V W +MI G + EAL F
Sbjct: 168 MKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFF 227
Query: 61 PE-MQTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
++ ++++PD F++ L+A MY K
Sbjct: 228 SSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAK 287
Query: 87 CGDVEKAQRVLRK--MLRKDKFTWTAMIVG-LAISDPFPTIR-------PDEVTYVGVLS 136
G VE A+R++ + + D +TA++ G + + D P + PD V + ++
Sbjct: 288 SGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIV 347
Query: 137 ACTHNG 142
NG
Sbjct: 348 GYVQNG 353
>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 454
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 81/187 (43%), Gaps = 48/187 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV SW +VSGY G + AR+ F +MP R+ V W+AMID + F EAL++F +M
Sbjct: 141 DVASWNTMVSGYGKSGDLAAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMM 200
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
+PD +V +L A MYCKCG
Sbjct: 201 REGFKPDVVVLVSMLKACAHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCG 260
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
+E+A V + +D W +MI GLA++ P++ T+ G L
Sbjct: 261 CMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALC 320
Query: 137 ACTHNGN 143
ACTH G+
Sbjct: 321 ACTHTGH 327
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K ++S T +++ Y G +D AR F + ERD + W MIDGY + E L LF
Sbjct: 1 MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + +RP+E T++ +L+A MY KC
Sbjct: 61 RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTIR--------PDEVTYVGVL 135
G +E A+ V ++ KD W +M+VG A+ D + P ++T++GVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 181 NACSHAG 187
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G+ RG+++ AR F +MP R+ V WT +IDGY R EA+ L
Sbjct: 155 MPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSRNVVSWTGLIDGYTRSCHSVEAVALL 214
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M I P E T++ ++ A +Y K
Sbjct: 215 RRMMAEGISPTEITVLAVVPAISDIGRILMGETLHGYCEKNGLVLDIRVGNSLIDLYAKI 274
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
G ++ + +V ML R++ +WT++I G A+ + F IRP+ VT++ V
Sbjct: 275 GSIQSSLKVFHGMLNRRNLVSWTSIISGFAMHGLSTEAVELFAEMRRSGIRPNRVTFLSV 334
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 335 LNACSHGG 342
>gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 94.7 bits (234), Expect = 9e-18, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y + G+V+ A + FA+MP+ + V WTAMI G+ + R + L+ EM+
Sbjct: 154 DVYLGSSLVVLYRDSGEVENAHKVFAEMPDNNVVSWTAMISGFAQEWRVDICMKLYSEMR 213
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
S P+++T +L+A MYCKCGD++
Sbjct: 214 NSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLQMGLKSYLHISNSLISMYCKCGDLK 273
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-------------ISDPFPTIRPDEVTYVGVLSAC 138
A R+ + KD +W +MI G A + P I+PD +TY+G+LS+C
Sbjct: 274 DAFRIFDQFSNKDVVSWNSMIAGYAQYGLATQAIELFELMMPKSGIKPDAITYLGLLSSC 333
Query: 139 THNG 142
H G
Sbjct: 334 RHAG 337
>gi|242054205|ref|XP_002456248.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
gi|241928223|gb|EES01368.1| hypothetical protein SORBIDRAFT_03g032860 [Sorghum bicolor]
Length = 402
Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V G VD AR F MP+RD+V W AMI GY+ V R REAL LF EM
Sbjct: 179 DVVCVTAMVGALAAGGDVDAARGLFDGMPQRDHVAWNAMIAGYVHVGRSREALRLFDEML 238
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ E T+V +LTA MY KCG V
Sbjct: 239 SAGTTVGEATLVSVLTACAQIGALDRGKWVHWYVRSRGMQMSVKLGTALVDMYSKCGAVV 298
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V M ++ +TWT+ + GLA++ I+P+ V++V VL C+
Sbjct: 299 TAMEVFESMAERNVYTWTSAVSGLAMNGMGVECLQLFKRMVSAGIQPNGVSFVAVLGGCS 358
Query: 140 HNG 142
G
Sbjct: 359 IAG 361
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW ++ GY+ G + AR+ F MP R+ V WT +I Y ++ + EA+ +F MQ
Sbjct: 141 DVVSWNVMIDGYVKSGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQ 200
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
I PD ++ +L+A MY KCG V+
Sbjct: 201 VEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVK 260
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
KA V M +K TWT MI G A+ + F + P+++T++ VLS C+
Sbjct: 261 KALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCS 320
Query: 140 HNG 142
H G
Sbjct: 321 HVG 323
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G+ G+V+ AR F QMP R+ V WT +IDGY R + EALTL
Sbjct: 540 MPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLL 599
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M I P E T++ ++ A +Y K
Sbjct: 600 RHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKI 659
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V+ + +V +ML R++ +WT++I G A+ + F +R P+ +T++ V
Sbjct: 660 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 719
Query: 135 LSACTHNG 142
++AC+H G
Sbjct: 720 INACSHGG 727
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK+K+ ++ +++ Y G + A++ F Q+P +D + W++MI Y + + F ++L LF
Sbjct: 1102 MKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELF 1161
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + ++PD I +L+A M+ KC
Sbjct: 1162 RQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKC 1221
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G V++A +V M KD +W ++I+GLA + D F ++ RP+EVT++GVL
Sbjct: 1222 GCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVL 1281
Query: 136 SACTH 140
AC +
Sbjct: 1282 IACAN 1286
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 80/214 (37%), Gaps = 76/214 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y G + AR F +M +D V W ++I GY + NR +E LTLF MQ
Sbjct: 974 DIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQ 1033
Query: 65 TSNIRPDEFTIVRILTA--------------------------YM-------YCKCGDVE 91
++ D+ T+V++++A Y+ YC+ G ++
Sbjct: 1034 AEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQ 1093
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPT------------------ 123
A++V +M K+ T AMI A I D P
Sbjct: 1094 SAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASH 1153
Query: 124 ---------------IRPDEVTYVGVLSACTHNG 142
++PD V VLSAC H G
Sbjct: 1154 FSDSLELFRQMQRAKVKPDAVVIASVLSACAHLG 1187
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 65/164 (39%), Gaps = 45/164 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A + F Q+ LW ++ G + + ++A+ + + Q ++PD T +L A
Sbjct: 893 AHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAK 952
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
Y+Y CG + A+ V +ML KD +W ++
Sbjct: 953 TCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012
Query: 112 IVGLAISDPFP------------TIRPDEVTYVGVLSACTHNGN 143
I G + + ++ D+VT V V+SACTH G+
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGD 1056
>gi|354805242|gb|AER41656.1| CRR4 [Oryza rufipogon]
Length = 752
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D A + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 272 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 331
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 332 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 391
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CGDV +AQ + KM + TWT MI G A + D ++ D+ ++
Sbjct: 392 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 451
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 452 LAACAHGG 459
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A +F MPER+ V W ++ G+ R+ A +F
Sbjct: 179 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 238
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M + N + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 239 DRMPSRN------AVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 292
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 293 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 352
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 353 ACAQLGS----VEYCN 364
>gi|354805213|gb|AER41630.1| CRR4 [Oryza nivara]
Length = 748
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 83/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D A + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 268 MDQKDVVSWTAMVSAYAKIGDLDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 327
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 328 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 387
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CGDV +AQ + KM + TWT MI G A + D ++ D+ ++
Sbjct: 388 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 447
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 448 LAACAHGG 455
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A +F MPER+ V W ++ G+ R+ A +F
Sbjct: 175 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 234
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M + N + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 235 DRMPSRN------AVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 288
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 289 LDTANELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 348
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 349 ACAQLGS----VEYCN 360
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY ++G + A++ F ++P +D V W AMI GY +EAL LF E
Sbjct: 166 HRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKE 225
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A +Y KCG+
Sbjct: 226 MMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 285
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + KD +W +I G + + P++VT + +L A
Sbjct: 286 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 345
Query: 138 CTHNG 142
C H G
Sbjct: 346 CAHLG 350
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 76/186 (40%), Gaps = 78/186 (41%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDVISW ++ GY + +N ++EAL LF EM
Sbjct: 299 KDVISWNTLIGGYTH-------------------------------MNLYKEALLLFQEM 327
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
S P++ T++ IL A MY KCG
Sbjct: 328 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG 387
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLS 136
D+E AQ+V +L + +W AMI G A+ D F +R PD++T+VG+LS
Sbjct: 388 DIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLS 447
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 448 ACSHSG 453
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A+Q F + R W AMI G+ R A +F M+ + I
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 436
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M K T + MI L S F
Sbjct: 437 PDDITFVGLLSACSH--SGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 494
Query: 123 -------TIRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC N
Sbjct: 495 EEMINTMEMEPDGVIWCSLLKACKMYAN 522
>gi|125548143|gb|EAY93965.1| hypothetical protein OsI_15743 [Oryza sativa Indica Group]
gi|125590256|gb|EAZ30606.1| hypothetical protein OsJ_14659 [Oryza sativa Japonica Group]
Length = 328
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ DV+S +V GY+ G++ +A + F MPERD V W ++ G + R +A+ LF
Sbjct: 1 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ RPD+ + +L+ +Y KC
Sbjct: 61 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 120
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G VE A+ V K+ FTW A+IVGLA+ D F + RPD T++GVL
Sbjct: 121 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 180
Query: 136 SACTHNG 142
C+H G
Sbjct: 181 IGCSHAG 187
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T IV Y G+V++AR+ F PE++ W A+I G AL F M R
Sbjct: 111 TGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFR 170
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD-------KFTWTAMIVGLA--ISDP 120
PD T + +L + G V+ A+R+ +M + A ++G A I +
Sbjct: 171 PDGTTFLGVLIGCSH--AGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEA 228
Query: 121 FPTIR--PDEV-TYV--GVLSACTHNGN 143
I P E TYV G+L+ C +GN
Sbjct: 229 MEMISSMPMEADTYVWGGILAGCRMHGN 256
>gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like, partial [Brachypodium distachyon]
Length = 357
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DV+S+ ++ GYI G++ +A + F +MP+RD V W ++ G + R+ EA+ LF
Sbjct: 39 MPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRDAVSWGTVVAGCAKAGRWEEAVLLF 98
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ RPD+ + +L+ +Y KC
Sbjct: 99 DRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHEYVRQSRPRPNVFLCTGLVDLYAKC 158
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVL 135
G VE A+ V ++ FTW A+IVGLA+ RPD VT++GVL
Sbjct: 159 GCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRMLAEGFRPDGVTFLGVL 218
Query: 136 SACTHNG 142
C+H G
Sbjct: 219 IGCSHAG 225
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V T +V Y G V+IAR+ F PER+ W A+I G L F M
Sbjct: 144 NVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTVTLKYFDRML 203
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA- 116
RPD T + +L + G ++ A+R+ +M K + A ++G A
Sbjct: 204 AEGFRPDGVTFLGVLIGCSH--AGLIDMAKRIFFEMEMKYGVSRELKHYGCMADLLGRAG 261
Query: 117 -ISDPFPTIRP-----DEVTYVGVLSACTHNGN 143
I + ++ D + G+L+ C +GN
Sbjct: 262 LIEEAMEMVKKMPMEGDTYVWGGILAGCRKHGN 294
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ ++W +++G + G+++ AR +F MPE++ V WT +IDGY+R+NR E L LF
Sbjct: 18 MPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGIIDGYVRMNRITEGLALF 77
Query: 61 PEMQT-SNIRPDEFTIVRILTAY----------------------------------MYC 85
M + I P E TI+ IL A Y
Sbjct: 78 RRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRGFNSSDIRVTNSIIDTYA 137
Query: 86 KCGDVEKAQRVLRKML--RKDKFTWTAMIVGLAISD------------PFPTIRPDEVTY 131
KCG + A R ++ RK+ +WT++I G A+ ++P+ VT+
Sbjct: 138 KCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVKRFENMERTGLKPNRVTF 197
Query: 132 VGVLSACTHNG 142
+ VL+AC+H G
Sbjct: 198 LSVLNACSHGG 208
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 52/189 (27%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+S T ++S Y GQ+D AR F +P +D V W AM+DGY + R EAL LF +M
Sbjct: 188 VVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLR 247
Query: 66 SNIRPDEFTIVRILTAY-------------------------------------MYCKCG 88
S + PDE ++V L+A MY KCG
Sbjct: 248 SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCG 307
Query: 89 DVEKAQRVLRKM---LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVG 133
+E+A V R + +D W AMI G A+ + F +R P ++T++G
Sbjct: 308 SLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIG 367
Query: 134 VLSACTHNG 142
VL+AC+H+G
Sbjct: 368 VLNACSHSG 376
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ ++W ++S Y+ G +D AR+ F MP R+ V W +MI GY + + A+ LF EM
Sbjct: 167 RNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 226
Query: 64 QTSN-IRPDEFTIVRILTA---------------------------------YMYCKCGD 89
T+ + PDE T+V +++A +MY +CG
Sbjct: 227 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 286
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+E A+RV ++M +D ++ +I G A I PD VT++GVL+A
Sbjct: 287 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 346
Query: 138 CTHNG 142
C+H G
Sbjct: 347 CSHAG 351
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+WT +V+GY ++ AR+YF MPER V W AM+ GY + EAL LF
Sbjct: 100 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 159
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM + + T +++AYM + GD++ A+++ M ++ TW +MI G A +
Sbjct: 160 DEMLGA--YRNSVTWNAMISAYM--RVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQ 215
Query: 121 FP-------------TIRPDEVTYVGVLSACTHNG 142
+ PDEVT V V+SAC H G
Sbjct: 216 SAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG 250
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ A++ F +M RD V + +I G+ EA+ L M+ I PD T
Sbjct: 281 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 340
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
+ +LTA + G +E+ ++V +
Sbjct: 341 IGVLTACSH--AGLLEEGRKVFESI 363
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 37/116 (31%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W +VSGY A+ F MPER+ + WTAM+ GY +V
Sbjct: 69 MYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVK--------- 119
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
D+E A+R M + +W AM+ G A
Sbjct: 120 ----------------------------DLEAARRYFDCMPERSVVSWNAMLSGYA 147
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 78/164 (47%), Gaps = 45/164 (27%)
Query: 24 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY- 82
I + F M E+D V+W AMI G ++ R ++AL LF EMQTSN PDE T++ L+A
Sbjct: 248 IVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACS 307
Query: 83 --------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY KCG++ +A V + ++ T+TA
Sbjct: 308 QLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTA 367
Query: 111 MIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
+I GLA+ T I PDE+T++G+LSAC H G
Sbjct: 368 IIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGG 411
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 58/181 (32%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+++ AR+ F + P RD V W +I+GY ++ +A+ ++ M++ ++PD+ T++ ++
Sbjct: 130 GEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLV 189
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRK------- 99
++ M+ KCGD+ +A+R+
Sbjct: 190 SSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIV 249
Query: 100 ------MLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSACTHN 141
M KD W AMI G LA+ T PDE+T + LSAC+
Sbjct: 250 SKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQL 309
Query: 142 G 142
G
Sbjct: 310 G 310
Score = 37.7 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A F + R+ + +TA+I G A++ F EM + I
Sbjct: 335 TSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 394
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
PDE T + +L+A C G ++ + +M K +F
Sbjct: 395 PDEITFIGLLSA--CCHGGMIQTGRDYFSQM--KSRF 427
Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPD 127
+ +M+ CG++E A++V + +D +W +I G + + + ++PD
Sbjct: 122 SIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPD 181
Query: 128 EVTYVGVLSACTHNGN 143
+VT +G++S+C G+
Sbjct: 182 DVTMIGLVSSCAMLGD 197
>gi|255540035|ref|XP_002511082.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550197|gb|EEF51684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 274
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 52/189 (27%)
Query: 6 VISWTD-------IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
V SWT ++ + G+ +IA++ F +MP RD V W ++I GY++ RF EAL
Sbjct: 71 VFSWTVNLVALNLVIDNIMRVGECEIAKKVFYKMPARDVVTWNSLIGGYVKNARFEEALR 130
Query: 59 LFPEMQTSNIRPDEFTIVRILTAY---------------------------------MYC 85
F M S+I PD+FT ++TA M+
Sbjct: 131 FFRVMLGSDIEPDKFTFASVITACARLGALDNAQWVHDLMIQKRVELNCILSSALIDMFS 190
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
KCG + A+ + R D W +MI GLA+ + PD +T++G
Sbjct: 191 KCGRIRTAKETFESVQRSDVSVWNSMINGLAVHGLALDAISVFLKMEVENVLPDSITFIG 250
Query: 134 VLSACTHNG 142
+L+AC H+G
Sbjct: 251 ILTACGHSG 259
>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
Length = 594
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 94/219 (42%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV---------- 50
M KD+ISW I+ GY+ G+ + A+ + MP RD + W MIDGY+++
Sbjct: 228 MPEKDLISWNSIIDGYVKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLL 287
Query: 51 --------------------NRFR-EALTLFPEMQT-SNIRPDEFTIVRILTAY------ 82
N++ EAL LF +M+ S++ PDE T+V +L+A
Sbjct: 288 DXIPHRDVVAYNSMMAGYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRL 347
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A V + K W A+I GL
Sbjct: 348 SKAVDMYLYVVKKQFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGL 407
Query: 116 AISD------------PFPTIRPDEVTYVGVLSACTHNG 142
AI +I+PD++T+ GVL+AC+H+G
Sbjct: 408 AIHGRGGPAFNMLLQIERSSIKPDDITFTGVLNACSHSG 446
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K+ S + SGY + IA + F++MPE+D + W ++IDGY++ R +A L+
Sbjct: 199 KNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISWNSIIDGYVKHGRXEDAKDLYDV 258
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y+ K G V +A+ +L + +D + +M+ G
Sbjct: 259 MP----RRDVITWATMIDGYV--KLGFVHQAKTLLDXIPHRDVVAYNSMMAGYVQNKYHM 312
Query: 115 -----LAISDPFPTIRPDEVTYVGVLSACTHNG 142
+ + PDE T V VLSA G
Sbjct: 313 EALELFGDMEKESHLSPDETTLVIVLSAIAQLG 345
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W ++ Y G + A F + + W A+I G R A + +++ S+I
Sbjct: 369 WVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNMLLQIERSSI 428
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT 123
+PD+ T +L A + G V++ M RK K + M+ L+ S
Sbjct: 429 KPDDITFTGVLNACSH--SGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIEL 486
Query: 124 ---------IRPDEVTYVGVLSACTHN 141
I P++V + L+AC+H+
Sbjct: 487 AKNLIEKMPIEPNDVIWRTFLTACSHH 513
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S+T ++ GY G + AR F + P+RD + W+A+I GY + + EA+ +F
Sbjct: 135 MPERNVVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQPNEAVRIF 194
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM++ N++PDE+ +V +++A M K
Sbjct: 195 LEMESKNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSSIDIGQTHVIAALIDMNAK 254
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
CG++E+A+++ +M ++D T+ +MI GL+I ++ PDE + V
Sbjct: 255 CGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLFNRMLNESLIPDEAAFTVV 314
Query: 135 LSACTHNG 142
L+AC+ G
Sbjct: 315 LTACSRGG 322
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT +V GY+N G + A + F QMPER+ W AMIDG+++ A +F
Sbjct: 73 MTQKNVVSWTAMVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWVKAGDLLLARKVF 132
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
EM N+ FT++ Y K GD+ A+ + + ++D W+A+I G A
Sbjct: 133 DEMPERNVV--SFTVM----IDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQ 186
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ ++PDE V ++SAC+ G+
Sbjct: 187 PNEAVRIFLEMESKNVKPDEYIMVSLMSACSQLGS 221
>gi|354805201|gb|AER41619.1| CRR4 [Oryza glumipatula]
Length = 745
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 82/185 (44%), Gaps = 43/185 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 268 MDQKDVVSWTAMVSAYAKIGDLDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 327
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 328 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 387
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPF--------PTIRPDEVTYVGVLSA 137
CGDV +AQ + KM + TWT MI G A + D ++ D+ ++ L+A
Sbjct: 388 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNRDALLVYNNMCREGVQLDDTVFIAALAA 447
Query: 138 CTHNG 142
C H G
Sbjct: 448 CAHGG 452
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 76/196 (38%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A +F MPER+ V W ++ G+ R+ A +F
Sbjct: 175 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 234
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M P + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 235 DRM------PSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 288
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 289 LDTTNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 348
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 349 ACAQLGS----VEYCN 360
>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Vitis vinifera]
Length = 654
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 44/183 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD ISW +++GY G ++IA +F MP RD V W ++I GY + LF M
Sbjct: 294 KDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAGYAQKGDCLMVQRLFENM 353
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
NI PD TI+ +++A MY KCG +
Sbjct: 354 VAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKIDAFLGSAFIDMYWKCGSI 413
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-----------DPFPTIRPDEVTYVGVLSACT 139
++A V R++ KD WT MI G A + + P++VT+V VL+AC+
Sbjct: 414 KRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEMQEYVMPNQVTFVAVLTACS 473
Query: 140 HNG 142
H+G
Sbjct: 474 HSG 476
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 35/136 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y+ ++ +A Q F QM D V + MI GY + EAL EM ++PDEFT+
Sbjct: 172 YLENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKGHNIEALKFLHEMVGLGLKPDEFTM 231
Query: 76 VRILTAY-----------------------------------MYCKCGDVEKAQRVLRKM 100
+ +L MY KC ++ AQ + +
Sbjct: 232 LGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNNALLDMYVKCKELRIAQSIFNVI 291
Query: 101 LRKDKFTWTAMIVGLA 116
+RKD +W MI G A
Sbjct: 292 VRKDTISWNTMIAGYA 307
>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
Length = 590
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/186 (32%), Positives = 82/186 (44%), Gaps = 48/186 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SW +VSGY G ++ AR+ F +MPER V W+AMID +R F EAL +F +M
Sbjct: 148 DVVSWNTMVSGYGKCGDLEAAREVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMT 207
Query: 65 TSNIRPDEFTIVRIL----------------------------------TAY--MYCKCG 88
+ +PD +V +L TA MYCKCG
Sbjct: 208 GNGFKPDAVVLVSVLKTCAHLGALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCG 267
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFPTIR--------PDEVTYVGVLS 136
+ +A V + D W AMI GLA++ R P+E T+V L
Sbjct: 268 CMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALC 327
Query: 137 ACTHNG 142
AC H G
Sbjct: 328 ACIHTG 333
Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+ T +V Y G ++ A F + D VLW AMI G + AL LF M
Sbjct: 252 NVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRALELFRRML 311
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T V L A ++ G V++ + V R M
Sbjct: 312 DKGFVPNESTFVVALCACIH--TGRVDEGEDVFRSM 345
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ ++W ++S Y G +D AR+ F MP R+ V W +MI GY + + A+ LF EM
Sbjct: 325 RNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEM 384
Query: 64 QTSN-IRPDEFTIVRILTA---------------------------------YMYCKCGD 89
T+ + PDE T+V +++A +MY +CG
Sbjct: 385 ITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGS 444
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+E A+RV ++M +D ++ +I G A I PD VT++GVL+A
Sbjct: 445 MEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 504
Query: 138 CTHNG 142
C+H G
Sbjct: 505 CSHAG 509
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 85/220 (38%), Gaps = 78/220 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+WT +V+GY ++ AR+YF MPER V W AM+ GY + E L LF
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLF 248
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + I PDE T V +++A MY KC
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKC 308
Query: 88 GDVEKAQRVLRK--------------------------------MLRKDKFTWTAMIVGL 115
G + A+R+ + M ++ TW +MI G
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368
Query: 116 AISDPFP-------------TIRPDEVTYVGVLSACTHNG 142
A + + PDEVT V V+SAC H G
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG 408
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 20/146 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
++ Y G + AR+ F ++P ER W AM+ GY + +A LF M N+
Sbjct: 136 VIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV- 194
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISD 119
T ++T Y K D+E A+R M + +W AM+ G A + D
Sbjct: 195 ---ITWTAMVTGY--AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFD 249
Query: 120 PF--PTIRPDEVTYVGVLSACTHNGN 143
I PDE T+V V+SAC+ G+
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGD 275
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ A++ F +M RD V + +I G+ EA+ L M+ I PD T
Sbjct: 439 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 498
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
+ +LTA + G +E+ ++V +
Sbjct: 499 IGVLTACSH--AGLLEEGRKVFESI 521
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++ V+S+T +++GY +RG ++ AR+ F ++ +D V W AMI GY+ F+EAL L+ +
Sbjct: 128 HRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKD 187
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N++PDE T+V +++A +Y KCG+
Sbjct: 188 MMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE 247
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + + +KD +W +I G + + P++VT + VL A
Sbjct: 248 VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 307
Query: 138 CTHNG 142
C H G
Sbjct: 308 CAHLG 312
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+V+ A F + ++D + W +I G+ +N ++EAL LF EM S P+
Sbjct: 238 LIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPN 297
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ +L A MY KCGD+E A++V
Sbjct: 298 DVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQV 357
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
ML + +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 358 FDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSG 415
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A+Q F M R W AMI G+ + A LF +M+ + I
Sbjct: 339 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT- 123
PD+ T V +L+A + G ++ + + R M + K T + MI L F
Sbjct: 399 PDDITFVGLLSACSH--SGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEA 456
Query: 124 --------IRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC + N
Sbjct: 457 KEMIRTMPMEPDGVIWCSLLKACKMHNN 484
Score = 42.4 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G+++ A + F + R V +TA+I GY A LF E+ ++
Sbjct: 104 TSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVV 163
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEV 129
I Y + + ++A + + M++ + ++PDE
Sbjct: 164 SWNAMISG------YVETCNFKEALELYKDMMKTN-------------------VKPDES 198
Query: 130 TYVGVLSACTHNGN 143
T V V+SAC +G+
Sbjct: 199 TMVTVVSACAQSGS 212
>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 794
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +VS Y G ++ A + F ++P R+ V W+ M+ Y N EA+ +F
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIF 353
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
+M + + P + T+V +L+A M+ K
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAK 413
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPFP--TIRPDEVTYVGV 134
CGDV A R+ M K+ +W MI+ L + F I PDE TY+GV
Sbjct: 414 CGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGV 473
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 474 LSACSHGG 481
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 34/148 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ V++ +V Y + + AR+ F +M +RD V WT +IDGY R EA +F
Sbjct: 163 GQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCR 222
Query: 63 MQTS-NIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M + ++ P+E T+V +A M+ KCG
Sbjct: 223 MVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCG 282
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V A+ V M KD ++WT+M+ A
Sbjct: 283 CVAAAKEVFDGMPIKDVYSWTSMVSAYA 310
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F+ M +++ V W MI + + EAL LF E + + I PDE T + +L
Sbjct: 415 GDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVL 474
Query: 80 TAYMYCKCGDVEKAQRVLRKMLR------KDKFTWTAMI-----VGLAISDPFPTIR--- 125
+A C G + R K ++ + MI VGL + + F R
Sbjct: 475 SA---CSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGL-LQEAFEVARSMP 530
Query: 126 --PDEVTYVGVLSACTHNGN 143
DE + +L+AC +GN
Sbjct: 531 VGADEAGWGALLNACRMHGN 550
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+ W ++ GY G V+ F +MPER+ W A+I GY F E L F
Sbjct: 101 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 160
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M + S++ P++ T+V +L+A MY K
Sbjct: 161 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 220
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG +E A V R M KD +W +I GLA+ +D +PD +T++G+
Sbjct: 221 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 280
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 281 LCACTHMG 288
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +++GYI + AR+ F PERD VLW M+ GY+ EA LF
Sbjct: 39 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF 98
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM P+ + Y G+VE + + +M ++ F+W A+I G A +
Sbjct: 99 HEM------PNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 152
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC G
Sbjct: 153 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 187
>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
Length = 646
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +VS Y G ++ A + F ++P R+ V W+ M+ Y N EA+ +F
Sbjct: 294 MPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIF 353
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
+M + + P + T+V +L+A M+ K
Sbjct: 354 NDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAK 413
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPFP--TIRPDEVTYVGV 134
CGDV A R+ M K+ +W MI+ L + F I PDE TY+GV
Sbjct: 414 CGDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGV 473
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 474 LSACSHGG 481
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 34/147 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ V++ +V Y + + AR+ F +M +RD V WT +IDGY R EA +F M
Sbjct: 164 QSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRM 223
Query: 64 QTS-NIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ ++ P+E T+V +A M+ KCG
Sbjct: 224 VVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGC 283
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V A+ V M KD ++WT+M+ A
Sbjct: 284 VAAAKEVFDGMPIKDVYSWTSMVSAYA 310
Score = 43.9 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F+ M +++ V W MI + + EAL LF E + + I PDE T + +L
Sbjct: 415 GDVGAASRLFSNMEDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVL 474
Query: 80 TAYMYCKCGDVEKAQRVLRKML--------RKDKFTWTAMIVGLA--ISDPFPTIR---- 125
+A C G + R K + R + + ++G + + F R
Sbjct: 475 SA---CSHGGLVSEGRCHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPV 531
Query: 126 -PDEVTYVGVLSACTHNGN 143
DE + +L+AC +GN
Sbjct: 532 GADEAGWGALLNACRMHGN 550
>gi|212275378|ref|NP_001130377.1| uncharacterized protein LOC100191472 [Zea mays]
gi|194688970|gb|ACF78569.1| unknown [Zea mays]
Length = 361
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + ++SW ++ Y+ G V+ A F ++PE + + WTAMI G R EAL LF
Sbjct: 1 MEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALALF 60
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M +I PD+FT +L A MY K
Sbjct: 61 IVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAK 120
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPT--IRPDEVTYVGV 134
CGDVE V ++ KD +W M+ G AI+ D + + PDEVT+ G+
Sbjct: 121 CGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANEALVVYDSMKSHEVCPDEVTFAGL 180
Query: 135 LSACTHNG 142
L+AC H+G
Sbjct: 181 LTACNHSG 188
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+ W ++ GY G V+ F +MPER+ W A+I GY F E L F
Sbjct: 259 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 318
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M + S++ P++ T+V +L+A MY K
Sbjct: 319 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 378
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG +E A V R M KD +W +I GLA+ +D +PD +T++G+
Sbjct: 379 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 438
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 439 LCACTHMG 446
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +++GYI + AR+ F PERD VLW M+ GY+ EA LF
Sbjct: 197 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM P+ + Y G+VE + + +M ++ F+W A+I G A +
Sbjct: 257 HEM------PNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 310
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC G
Sbjct: 311 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 345
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
ARQ F Q+P+ + LW +M GY + +RE + LF +M+ +IRP+ FT +L +
Sbjct: 89 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY G V A ++ +M ++ WT+M
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208
Query: 112 IVGLAISDPFPTIR 125
I G +S + R
Sbjct: 209 INGYILSADLVSAR 222
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K+V+SW ++ GY G++ +A++ F M E+D W+++IDGY++ + EA+ +F
Sbjct: 175 IQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIF 234
Query: 61 PEMQTSNIRPDEFTIV---------------RILTAY------------------MYCKC 87
+MQ++ + +E T+V R++ Y MY KC
Sbjct: 235 EKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAKC 294
Query: 88 GDVEKAQRVLRKMLRK--DKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVG 133
G +E+A + R++ + D W A+I GLA + + + PDEVTY+
Sbjct: 295 GAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEVTYLC 354
Query: 134 VLSACTHNG 142
+L+AC H G
Sbjct: 355 LLAACAHGG 363
Score = 40.0 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 33/136 (24%)
Query: 14 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
S N G ++ + + F+Q+ W +I GY ++L++F +M + PD
Sbjct: 56 SALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYL 115
Query: 74 TIVRILTA---------------------------------YMYCKCGDVEKAQRVLRKM 100
T ++ A +MY CG+ AQ+V +
Sbjct: 116 TYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDSI 175
Query: 101 LRKDKFTWTAMIVGLA 116
+K+ +W +M+ G A
Sbjct: 176 QQKNVVSWNSMLDGYA 191
>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 94.4 bits (233), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y + G+V+ A + F +MPER+ V WTAMI G+ + R L L+ +M+
Sbjct: 154 DVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMR 213
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
S P+++T +L+A MYCKCGD++
Sbjct: 214 KSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLK 273
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-------------ISDPFPTIRPDEVTYVGVLSAC 138
A R+ + KD +W +MI G A + P +PD +TY+GVLS+C
Sbjct: 274 DAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSC 333
Query: 139 THNG 142
H G
Sbjct: 334 RHAG 337
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G+ G+V+ AR F QMP R+ V WT +IDGY R + EALTL
Sbjct: 540 MPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLL 599
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M I P E T++ ++ A +Y K
Sbjct: 600 RHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKI 659
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V+ + +V +ML R++ +WT++I G A+ + F +R P+ +T++ V
Sbjct: 660 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 719
Query: 135 LSACTHNG 142
++AC+H G
Sbjct: 720 INACSHGG 727
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ ++ ++SGY+ G+VD AR+ F M +D W+A+I GY + EAL LF
Sbjct: 153 SEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQ 212
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M S+I P+E +V +L+A MY K G
Sbjct: 213 DMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHAYIDKTRVLMSTKLTTALIDMYAKSG 272
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
+E + +KM R+D TW MI AI IRP++V +V +LS
Sbjct: 273 SIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILS 332
Query: 137 ACTHNG 142
AC+H G
Sbjct: 333 ACSHAG 338
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 17/147 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ F +M RD V W MI + + LF EM IR
Sbjct: 262 TALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLFDEMLADGIR 321
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
P++ V IL+A + C VE+ ++ +M + + ++G A ++D
Sbjct: 322 PNKVIFVAILSACSHAGC--VEEGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADA 379
Query: 121 FPTI-----RPDEVTYVGVLSAC-THN 141
I +P+ + + +L AC THN
Sbjct: 380 EQLILSMPKQPNSIIWGSLLGACRTHN 406
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY ++G + A++ F ++P +D V W AMI GY +EAL LF E
Sbjct: 151 HRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKE 210
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A +Y KCG+
Sbjct: 211 MMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGE 270
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + KD +W +I G + + P++VT + +L A
Sbjct: 271 VETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPA 330
Query: 138 CTHNG 142
C H G
Sbjct: 331 CAHLG 335
Score = 75.9 bits (185), Expect = 5e-12, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 76/186 (40%), Gaps = 78/186 (41%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDVISW ++ GY + +N ++EAL LF EM
Sbjct: 284 KDVISWNTLIGGYTH-------------------------------MNLYKEALLLFQEM 312
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
S P++ T++ IL A MY KCG
Sbjct: 313 LRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCG 372
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLS 136
D+E AQ+V +L + +W AMI G A+ D F +R PD++T+VG+LS
Sbjct: 373 DIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLS 432
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 433 ACSHSG 438
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A+Q F + R W AMI G+ R A +F M+ + I
Sbjct: 362 TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M K T + MI L S F
Sbjct: 422 PDDITFVGLLSACSH--SGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEA 479
Query: 123 -------TIRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 480 EEMINTMEMEPDGVIWCSLLKACKMHGN 507
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW +++G+ G+V+ AR F +MP R+ V W+ MIDGY R R EA+ LF
Sbjct: 150 MPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALF 209
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M I P E T++ ++ A +Y K
Sbjct: 210 RRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKI 269
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
G ++ + RV +ML R++ +WT++I G A+ + F IRP+ +T++ V
Sbjct: 270 GSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSV 329
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 330 LHACSHGG 337
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 51/188 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +++++ +++ Y + AR+ F Q+P++D + W++MI GY + N F +AL +F
Sbjct: 714 MKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIF 773
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + ++PD I ++++ MY KC
Sbjct: 774 RQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKC 833
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
G ++A +V ++M KD +W ++I+GLA +++ F RP+ VT++
Sbjct: 834 GSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGF---RPNGVTFL 890
Query: 133 GVLSACTH 140
GVL AC +
Sbjct: 891 GVLIACAN 898
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 76/214 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y G + AR F +M +D V W ++I GY + NRF++ L LF MQ
Sbjct: 586 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 645
Query: 65 TSNIRPDEFTIVRILTA-----------YM------YC----------------KCGDVE 91
++ D+ T++++++A YM YC + G ++
Sbjct: 646 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 705
Query: 92 KAQRVL---------------------------RKML----RKDKFTWTAMIVGLAISDP 120
A++V RK+ +KD +W++MI G + ++
Sbjct: 706 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 765
Query: 121 F------------PTIRPDEVTYVGVLSACTHNG 142
F ++PD + V+S+C H G
Sbjct: 766 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLG 799
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 45/164 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A + F Q+ LW +I G + + +A+ + + Q + PD T IL A
Sbjct: 505 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 564
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
++Y CG++ A+ V +M+ KD +W ++
Sbjct: 565 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 624
Query: 112 IVGLAISDPFPTI------------RPDEVTYVGVLSACTHNGN 143
I G + + F I + D+VT + V+SACT G+
Sbjct: 625 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGD 668
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W +++GY+ G AR+ F MPER+ V WT +I GY ++ R +A+ +F
Sbjct: 139 MAVRDVVAWNVMIAGYVKAGDQAHARELFDAMPERNVVSWTTVIGGYAQMKRPEKAVEVF 198
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ I D ++ +L A MY KC
Sbjct: 199 RRMQVEGIEADGVALLSVLAACGDLGAVDLGEWVHRFVVRRGLCQEIPLMNSIIDMYMKC 258
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G +EKA V M K TWT +I G A+ + F + P+ VT++ +L
Sbjct: 259 GCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMFCRMERENMAPNAVTFLAIL 318
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 319 SACSHVG 325
>gi|116309314|emb|CAH66401.1| OSIGBa0155K12.4 [Oryza sativa Indica Group]
Length = 486
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ DV+S +V GY+ G++ +A + F MPERD V W ++ G + R +A+ LF
Sbjct: 159 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 218
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ RPD+ + +L+ +Y KC
Sbjct: 219 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 278
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G VE A+ V K+ FTW A+IVGLA+ D F + RPD T++GVL
Sbjct: 279 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 338
Query: 136 SACTHNG 142
C+H G
Sbjct: 339 IGCSHAG 345
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T IV Y G+V++AR+ F PE++ W A+I G AL F M R
Sbjct: 269 TGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFR 328
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
PD T + +L + G V+ A+R+ +M + A ++G A I +
Sbjct: 329 PDGTTFLGVLIGCSH--AGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEA 386
Query: 121 FPTIR--PDEV-TYV--GVLSACTHNGN 143
I P E TYV G+L+ C +GN
Sbjct: 387 MEMISSMPMEADTYVWGGILAGCRMHGN 414
>gi|21740620|emb|CAD40778.1| OSJNBb0012E08.2 [Oryza sativa Japonica Group]
Length = 486
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ DV+S +V GY+ G++ +A + F MPERD V W ++ G + R +A+ LF
Sbjct: 159 MRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLF 218
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ RPD+ + +L+ +Y KC
Sbjct: 219 DRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKC 278
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G VE A+ V K+ FTW A+IVGLA+ D F + RPD T++GVL
Sbjct: 279 GRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVL 338
Query: 136 SACTHNG 142
C+H G
Sbjct: 339 IGCSHAG 345
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T IV Y G+V++AR+ F PE++ W A+I G AL F M R
Sbjct: 269 TGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFR 328
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
PD T + +L + G V+ A+R+ +M + A ++G A I +
Sbjct: 329 PDGTTFLGVLIGCSH--AGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEA 386
Query: 121 FPTIR--PDEV-TYV--GVLSACTHNGN 143
I P E TYV G+L+ C +GN
Sbjct: 387 MEMISSMPMEADTYVWGGILAGCRMHGN 414
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+S+T +++GY +RG +D A + F ++P RD V W AMI GY + RF EAL F EM
Sbjct: 188 RDVVSYTALITGYASRGFLDQALELFDEIPVRDVVSWNAMIAGYTQSGRFEEALIFFEEM 247
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+N+ P+ T++ +L+A MY KCGD+
Sbjct: 248 LRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHGLESNIKVMNALIDMYAKCGDL 307
Query: 91 EKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVTYVGVLSAC 138
E A + + K+ +W MI +GL + P++VT + +L AC
Sbjct: 308 ENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPAC 367
Query: 139 THNG 142
+ G
Sbjct: 368 ANLG 371
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ A F + ++ + W MI GY ++ ++EAL LF +M SN+ P+
Sbjct: 297 LIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFRQMLQSNVEPN 356
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
+ T++ IL A MY KCG++E A ++
Sbjct: 357 DVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAKCGNIEVANQIF 416
Query: 98 RKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
M K +W AMI G A+ + PD +T++GVLSAC H G
Sbjct: 417 DGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGLVPDNITFIGVLSACNHAG 473
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
WT ++ Y G +++A Q F M + W AMI G+ + A++LF M +
Sbjct: 396 WTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLFSRMTKEGL 455
Query: 69 RPDEFTIVRILTA 81
PD T + +L+A
Sbjct: 456 VPDNITFIGVLSA 468
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+S+T ++ GY G + AR F + PERD V W+A+I GY++ + EA+ +F
Sbjct: 246 MPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIF 305
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + N++PDEF +V +++A M K
Sbjct: 306 LEMCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAK 365
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGV 134
CG +++A ++ +M ++D ++ +M+ GL+I P + PD+V + +
Sbjct: 366 CGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVI 425
Query: 135 LSACTHNG 142
L+AC+ G
Sbjct: 426 LTACSRAG 433
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT +++GY + + AR+ F +MPE++ V W A+I GY++ R A +F
Sbjct: 184 MGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM N+ + ++ Y K GD+ A+ V + +D W+A+I G + +
Sbjct: 244 DEMPHRNV----VSFTTMIDG--YAKSGDMASARFVFEEAPERDVVAWSALISGY-VQNG 296
Query: 121 FP-------------TIRPDEVTYVGVLSACTHNGN 143
P ++PDE V ++SAC+ G+
Sbjct: 297 QPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGS 332
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T ++ Y G++ AR+ F +M ER+ V WTAMI GY + EA LF EM
Sbjct: 157 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 216
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
N + I++ Y+ KCGD+ A+++ +M ++ ++T MI G A S +
Sbjct: 217 EKN----AVSWNAIISGYV--KCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASA 270
Query: 125 R--------PDEVTYVGVLSACTHNGN 143
R D V + ++S NG
Sbjct: 271 RFVFEEAPERDVVAWSALISGYVQNGQ 297
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYLRVNRFREA 56
+ + + W + GY V + F +M D V + ++I +V +E
Sbjct: 83 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 142
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ + D F + ++ +Y KCG++ A++V +M ++ +WTAMI G A
Sbjct: 143 VAFHGSAVRCGVGGDVFVMTSLID--LYGKCGEILCARKVFDEMGERNVVSWTAMIAGYA 200
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 63/184 (34%), Positives = 84/184 (45%), Gaps = 47/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V Y G + AR+ F ++PE++ V WTA+I GY+ F EAL LF +
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+RPD FT+VRIL A MY KCG +E
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLSAC 138
+A+RV M+ KD W+A+I G A S+ P +RPD VGV SAC
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYA-SNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314
Query: 139 THNG 142
+ G
Sbjct: 315 SRLG 318
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V T +V Y G ++ AR+ F M E+D V W+A+I GY +EAL +F EMQ
Sbjct: 237 NVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQ 296
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+RPD + +V + +A Y KCG V
Sbjct: 297 RENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVA 356
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
+A+ V + M RKD + A+I GLA+ ++PD T+VG+L CT
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416
Query: 140 HNG 142
H G
Sbjct: 417 HAG 419
Score = 53.1 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 50/169 (29%)
Query: 25 ARQY----FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
A QY FAQ P + L+ +I G + + FR+A++++ M+ PD FT +L
Sbjct: 50 ATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLK 109
Query: 81 A----------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A +Y K G + A++V ++ K+
Sbjct: 110 ACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVV 169
Query: 107 TWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNGN 143
+WTA+I G S F +RPD T V +L AC+ G+
Sbjct: 170 SWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGD 218
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + +V Y G+++ AR+ F + +D V W AMI GY + EA+ LF M+
Sbjct: 220 DSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSMR 279
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +RPD+ T+V +L++ MY KCGD+E
Sbjct: 280 EAGLRPDKITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYVGTALVDMYAKCGDLE 339
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR------PDEVTYVGVLSAC 138
KA V KM K++ +W A+I GLA + F +R PD++T++GVLSAC
Sbjct: 340 KATYVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKGLQPDDITFIGVLSAC 399
Query: 139 THNG 142
H G
Sbjct: 400 VHAG 403
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 21/136 (15%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF------PEMQTSNIRPDEFTIVRI 78
AR+ F +P RD V W +++ Y R R+A L ++++ + D +++
Sbjct: 169 ARRVFDGIPHRDVVSWNSIMKAYERA-ACRDAGNLVLGKWVEEWVRSAGMEVD--SLIGS 225
Query: 79 LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPF---------PTIRP 126
MY KCG++E+A+RV + KD W AMI G A +S+ +RP
Sbjct: 226 ALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRP 285
Query: 127 DEVTYVGVLSACTHNG 142
D++T VGVLS+C G
Sbjct: 286 DKITLVGVLSSCAAVG 301
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+DV+ W ++ GY G V+ F +MPER+ W A+I GY F E L F
Sbjct: 322 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSF 381
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
M + S++ P++ T+V +L+A MY K
Sbjct: 382 KRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAK 441
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG +E A V R M KD +W +I GLA+ +D +PD +T++G+
Sbjct: 442 CGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGI 501
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 502 LCACTHMG 509
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +++GYI + AR+ F PERD VLW M+ GY+ EA LF
Sbjct: 260 MFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLF 319
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM P+ + Y G+VE + + +M ++ F+W A+I G A +
Sbjct: 320 XEM------PNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 373
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC G
Sbjct: 374 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 408
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 33/134 (24%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
ARQ F Q+P+ + LW +M GY + +RE + LF +M+ +IRP+ FT +L +
Sbjct: 152 ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 211
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY G V A ++ +M ++ WT+M
Sbjct: 212 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 271
Query: 112 IVGLAISDPFPTIR 125
I G +S + R
Sbjct: 272 INGYILSADLVSAR 285
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW +++G++ G + A++ F +MPE++ V WT M++G+ + +AL F
Sbjct: 236 MPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETF 295
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M RP+++TIV L+A MY KC
Sbjct: 296 FCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKC 355
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G++E A++V + K W+ MI G AI F +PD V ++ VL
Sbjct: 356 GNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVL 415
Query: 136 SACTHNG 142
+AC+H+G
Sbjct: 416 NACSHSG 422
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G ++ A + F + E+ ++W+ MI G+ FR+AL F M+ + +
Sbjct: 346 TALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTK 405
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA--ISDP 120
PD + +L A + G V + + M R +T ++G A + +
Sbjct: 406 PDSVVFLAVLNACSH--SGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEA 463
Query: 121 FPTIR-----PDEVTYVGVLSAC-THNGNE 144
IR PD V + + AC TH E
Sbjct: 464 LKFIRAMPITPDFVVWGALFCACRTHKNVE 493
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+++ T +++ G +D AR+ F +MPERD+V W AMI GY + R REAL +F MQ
Sbjct: 177 DLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQ 236
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ +E ++V +L+A MY KCG+V+
Sbjct: 237 MEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVD 296
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
+A +V M ++ +TW++ I GLA++ D F ++P+ +T++ VL C+
Sbjct: 297 RAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCS 356
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 14/85 (16%)
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DP 120
+ PD T +L A KCGD++ A+++ +M +D TW AMI G A D
Sbjct: 174 VEPDLVTQTAMLNAC--AKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDV 231
Query: 121 F-----PTIRPDEVTYVGVLSACTH 140
F ++ +EV+ V VLSACTH
Sbjct: 232 FHLMQMEGVKLNEVSMVLVLSACTH 256
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K V++WT +++GY+ G++ +A + F +MPE++ V W AMI GY+ +R + + LF M
Sbjct: 129 KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTM 188
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
I+P+ T+ L MYCKCG +
Sbjct: 189 VGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVL 248
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSAC 138
E ++ ++ R+D TW AMI G L + D ++PD +T+V VL AC
Sbjct: 249 EDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMAC 308
Query: 139 THNG 142
H G
Sbjct: 309 NHAG 312
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW +++G+ Q+D AR F MP ++ V W AMI GY+ AL LF
Sbjct: 64 MPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLF 123
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ ++ ++T YM K G + A+R+ KM K+ TW AMI G
Sbjct: 124 EKAPFKSV----VAWTAMITGYM--KLGRIGLAERLFEKMPEKNLVTWNAMIAG 171
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +S+ ++S Y+ ++ A+ +F MP +D W MI G+ + + +A LF M
Sbjct: 37 DAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMP 96
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
T N+ T +++ Y+ +CGD++ A ++ K K WTAMI G
Sbjct: 97 TKNV----VTWNAMISGYV--ECGDLDSALKLFEKAPFKSVVAWTAMITG 140
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++++++SW ++G I G+V++A F QMP R V WT +IDGY R N+ +ALTLF
Sbjct: 184 MQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQPIKALTLF 243
Query: 61 PEM-QTSNIRPDEFTIVRILTAY----------------------------------MYC 85
+M + I P E T++ I A +Y
Sbjct: 244 RKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITNALLDLYA 303
Query: 86 KCGDVEKAQRVLRKM--LRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTY 131
KCG + R +++ R++ +WT+ I G A++ + F + +RP+ VT+
Sbjct: 304 KCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPNHVTF 363
Query: 132 VGVLSACTHNG 142
+GVLSAC+H G
Sbjct: 364 LGVLSACSHGG 374
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 16 YINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y G + ++F ++P+ R+ V WT+ I G+ REAL F M+ + +RP+
Sbjct: 302 YAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGLRPNHV 361
Query: 74 TIVRILTAYMYCKCGD-VEKAQRVLRKMLR 102
T + +L+A C G VE+ KM++
Sbjct: 362 TFLGVLSA---CSHGGLVEEGINFFVKMVK 388
>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY G++++AR+ F +M +++ + W+ MIDGY + +EAL LF
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLF 293
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I+PD ++V ++A MY KC
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++A+R+ M ++ +W MIVGL ++ I D++ ++GVL
Sbjct: 354 GSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVL 413
Query: 136 SACTH 140
AC+H
Sbjct: 414 MACSH 418
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 25/155 (16%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 59
KD++SW ++ GY+ G+++ A+ F +MPERD V W+ MIDGY + VNR R
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRAR---VF 230
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
F M T ++ I Y K G++E A+ + KML+K+ +W+ MI G A
Sbjct: 231 FDSMPTRDLVSWNSMIDG------YAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHR 284
Query: 120 PFPT------------IRPDEVTYVGVLSACTHNG 142
I+PD V+ VG +SAC+ G
Sbjct: 285 DSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLG 319
>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
Length = 786
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 51/187 (27%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W +++GY+ G V +AR+ F MP RD V W+ ++ GY++ AL +F M
Sbjct: 195 RDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNM 254
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++ +E IV L+A MY KCG V
Sbjct: 255 VVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSV 314
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYVGVL 135
A+ V M +D F W +MI GLA +S+ F P +T+VGVL
Sbjct: 315 AAAKEVFDAMPWRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFC---PTNITFVGVL 371
Query: 136 SACTHNG 142
+AC+ G
Sbjct: 372 NACSRTG 378
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+++ ++ G + ++ AR+ F MP RD V W ++I GY ++N REA+ LF EM
Sbjct: 181 RDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEM 240
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++PD IV L+A Y KCG +
Sbjct: 241 VALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFI 300
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSAC 138
+ A + K FTW AMI GLA+ D F I+PD VT++ VL C
Sbjct: 301 DTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGC 360
Query: 139 THNG 142
+H+G
Sbjct: 361 SHSG 364
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G +D A + F ++ W AMI G + F +M +S I+
Sbjct: 288 TGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIK 347
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T + +L + G V++A+ + +M
Sbjct: 348 PDGVTFISVLVGCSH--SGLVDEARNLFDQM 376
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D+ + ++ YI G + A + F ++ D V WT MI GY+ AL+++
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHL 1190
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ S ++PDE+T ++ A MYCKCG
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGS 1250
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSA 137
V+ A RV RKM + W AM++GLA + F T I+PD+VT++GVLSA
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310
Query: 138 CTHNG 142
C+H+G
Sbjct: 1311 CSHSG 1315
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++D A + D W A++ GY++ N+ R+AL F M I
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
DE T+ + A MY KCGD+ A +
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156
Query: 97 LRKMLRKDKFTWTAMIVGL--------AIS----DPFPTIRPDEVTYVGVLSACT 139
++ R D+ WT MI G A+S ++PDE T+ ++ A +
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G V A + F PE D + W MI Y + N EA+ F ++ ++PD
Sbjct: 935 LMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPD 994
Query: 72 EFTIVRILTAYMYCKCGD 89
+FT+ +L A C GD
Sbjct: 995 QFTLASVLRA---CSTGD 1009
Score = 47.0 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y G V AR F +MPERD VLW M+ Y+ + EAL F S PD
Sbjct: 758 LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D+ + ++ YI G + A + F ++ D V WT MI GY+ AL+++
Sbjct: 1131 NNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHL 1190
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ S ++PDE+T ++ A MYCKCG
Sbjct: 1191 MRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGS 1250
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSA 137
V+ A RV RKM + W AM++GLA + F T I+PD+VT++GVLSA
Sbjct: 1251 VQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSA 1310
Query: 138 CTHNG 142
C+H+G
Sbjct: 1311 CSHSG 1315
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++D A + D W A++ GY++ N+ R+AL F M I
Sbjct: 1037 TALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIP 1096
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
DE T+ + A MY KCGD+ A +
Sbjct: 1097 IDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALEL 1156
Query: 97 LRKMLRKDKFTWTAMIVGL--------AIS----DPFPTIRPDEVTYVGVLSACT 139
++ R D+ WT MI G A+S ++PDE T+ ++ A +
Sbjct: 1157 FGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G V A + F PE D + W MI Y + N EA+ F ++ ++PD
Sbjct: 935 LMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPD 994
Query: 72 EFTIVRILTAYMYCKCGD 89
+FT+ +L A C GD
Sbjct: 995 QFTLASVLRA---CSTGD 1009
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 30/60 (50%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y G V AR F +MPERD VLW M+ Y+ + EAL F S PD
Sbjct: 758 LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V W ++ + G ++ A + F +MP RD V W ++I Y ++ + AL +F
Sbjct: 217 MPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKVF 276
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + P E T+V +L A MY KC
Sbjct: 277 REMQDSGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVGNALVDMYAKC 336
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR--PDEVTYVGVLSAC 138
G +E A++V M +D W AMIVGL++ + F +R PD VT++GVL C
Sbjct: 337 GSLELARQVFESMSTRDITCWNAMIVGLSVHGYSREALELFNVMRVEPDHVTFLGVLIVC 396
Query: 139 THNG 142
+H+G
Sbjct: 397 SHSG 400
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 22/145 (15%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS Y G++ AR+ F MP R+ V W A++ + V R A + EM ++
Sbjct: 166 LVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGDVGDSRGAERVSQEMPERSVSWW 225
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------I 117
I R + + GD+E A RV R+M +D +W ++I A +
Sbjct: 226 NAEITR------HARVGDMEAAARVFREMPGRDAVSWNSLIGSYAKLGQCARALKVFREM 279
Query: 118 SDPFPTIRPDEVTYVGVLSACTHNG 142
D + P E+T V VL ACT G
Sbjct: 280 QD--SGVEPTELTLVSVLGACTEIG 302
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY++RG ++ A++ F ++P +D V W AMI GY+ ++EAL LF E
Sbjct: 152 HRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKE 211
Query: 63 -MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M +N+RPDE T+V +++A +Y K G
Sbjct: 212 MMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFG 271
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLS 136
+VE A + + KD +W +I G + + P++VT + +L
Sbjct: 272 EVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 331
Query: 137 ACTHNG 142
AC H G
Sbjct: 332 ACAHLG 337
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 49/176 (27%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+V+ A + F + +D + W +I GY +N ++EAL LF EM S P++ T+
Sbjct: 267 YSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 326
Query: 76 VRILTAY------------------------------------MYCKCGDVEKAQRVL-R 98
+ IL A MY KCGD++ AQ+V
Sbjct: 327 LSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDS 386
Query: 99 KMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
M + TW AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 387 SMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSG 442
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 17/149 (11%)
Query: 10 TDIVSGYINRGQVDIARQYF-AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
T ++ Y G +D A+Q F + M R W AMI G+ R A +F M+ + I
Sbjct: 365 TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGI 424
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT 123
PD+ T V +L+A + G ++ + + R M R + T + MI L S F
Sbjct: 425 EPDDITFVGLLSACSH--SGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKE 482
Query: 124 ---------IRPDEVTYVGVLSACTHNGN 143
+ PD V + +L AC +GN
Sbjct: 483 AEEMINTMPMEPDGVIWCSLLKACKIHGN 511
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 24/137 (17%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++S Y G+++ AR+ F RD V +TA+I GY+ A LF E+
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI- 181
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
P + + Y + G+ ++A + ++M+ +
Sbjct: 182 -----PGKDVVSWNAMISGYVETGNYKEALELFKEMMM------------------MTNV 218
Query: 125 RPDEVTYVGVLSACTHN 141
RPDE T V V+SAC +
Sbjct: 219 RPDESTMVTVVSACAQS 235
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+S+ ++ G + Q+ AR+ F +MP RD + W MI GY + +A+ LF EM
Sbjct: 174 DVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMM 233
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++PD +V +L+A +Y KCG VE
Sbjct: 234 RLEVKPDNIALVSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVE 293
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
A+ V + K FTW AM+VG AI ++PD VT +GVL C+
Sbjct: 294 TARDVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCS 353
Query: 140 HNG 142
H G
Sbjct: 354 HAG 356
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+SWT +V G G VD AR+ F MP R+ V W +MI GY++ +RF +AL +F EM+
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + F L A MYCKCG V+
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSACT 139
+A V + + TW MI G A+ D + PD+VT + VL+AC
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342
Query: 140 HNG 142
H G
Sbjct: 343 HAG 345
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G VD A F +P R W MI G+ R +AL LF +M+ + +
Sbjct: 269 TAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVA 328
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PD+ T++ +LTA + G+V + +R L ++ +
Sbjct: 329 PDDVTLLNVLTACAH--AGEVSEGRRYLNHIVSR 360
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 46/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ SW +++ Y+ G + +A++ F M ERD V W+ +I GY++V F EAL F +
Sbjct: 178 DRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHK 237
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +P+E+T+V L A MY KCG+
Sbjct: 238 MLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGE 297
Query: 90 VEKAQRVLRKMLRKDK-FTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
+E A RV + K K + W AMI G A+ I P++VT++ +L+
Sbjct: 298 IESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLN 357
Query: 137 ACTHN 141
AC+H
Sbjct: 358 ACSHG 362
>gi|354805142|gb|AER41563.1| CRR4 [Oryza australiensis]
Length = 599
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 81/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D A+Q F MP ++ V W AMI GY +R+ EAL F
Sbjct: 266 MDQKDVVSWTAMVSAYAKIGDLDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 325
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 326 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWIGSFIGKSKIHLTVALGNALIDMFAK 385
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CGDV +AQ +M + TWT MI G A + I D+ ++
Sbjct: 386 CGDVGRAQSFFYEMKTRCIITWTTMISGFAFNGFCREALLVYNNMCREGIELDDTVFIAA 445
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 446 LAACAHGG 453
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 74/196 (37%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW IV Y++ G A F MPER+ V W ++ G+ R A T+F
Sbjct: 173 MVEKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARAGDMVTARTVF 232
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M + N + L Y GDVE A V +M +KD +WTAM+ A
Sbjct: 233 DRMPSRN------AVSWNLMISGYATSGDVEAAHSVFDRMDQKDVVSWTAMVSAYAKIGD 286
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 287 LDNAKQLFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 346
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 347 ACAQLGS----VEYCN 358
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 91/192 (47%), Gaps = 52/192 (27%)
Query: 1 MKNKD-VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
+ +KD V SW ++SG++ G ++ ARQ F +MPERD W++MI GY + + AL L
Sbjct: 376 LGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQL 435
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F EM ++P+E T+V + +A MY K
Sbjct: 436 FHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAK 495
Query: 87 CGDVEKAQRVLRKMLRKDKFT----WTAMIVGLAISDPFPT------------IRPDEVT 130
CG + A ++ ++ +D+ + W A+I GLA+ I+P+ +T
Sbjct: 496 CGSITIALQLFYEI--QDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSIT 553
Query: 131 YVGVLSACTHNG 142
++GVLSAC H G
Sbjct: 554 FIGVLSACCHAG 565
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 89/210 (42%), Gaps = 76/210 (36%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++W +++GY G VD+AR F ++P +D V W +IDGY+++ R EAL ++ M
Sbjct: 248 RNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSM 307
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD- 89
+ + P+E IV +++A + Y CG+
Sbjct: 308 LRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEI 367
Query: 90 ------------------------------VEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
+E+A+++ +M +D F+W++MI G + ++
Sbjct: 368 NLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNE 427
Query: 120 P------------FPTIRPDEVTYVGVLSA 137
++P+E+T V V SA
Sbjct: 428 QPDLALQLFHEMVAGGVQPNEITMVSVFSA 457
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 33/147 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +S +++GY+ G +D AR F +MP + V +T M+ G + N + EA+ +F +M+
Sbjct: 117 DPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMR 176
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + P+E T+ +++AY MYC C +
Sbjct: 177 FAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVCSSLG 236
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS 118
A+ + ++ ++ TW M+ G + S
Sbjct: 237 NARVLFDEIPERNVVTWNVMLNGYSKS 263
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTY 131
Y K G ++ A+ + KM K ++T M++GLA ++ F + P+EVT
Sbjct: 128 YVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTL 187
Query: 132 VGVLSACTHNGN 143
V+SA +H G
Sbjct: 188 ASVISAYSHVGG 199
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/177 (31%), Positives = 86/177 (48%), Gaps = 45/177 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ AR+ F M RD V W+AMI GY + ++ REAL LF EMQ + +
Sbjct: 260 TALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVE 319
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
P++ T+V +L+A Y KCG ++ A
Sbjct: 320 PNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEA 379
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
M K+ +TWTA+I G+A + + F ++R P +VT++GVL AC+H+
Sbjct: 380 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHS 436
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 45/174 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y + G V AR F E V+W A++ YL+ + E + +F M +
Sbjct: 159 SSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVA 218
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
DE T+V ++TA MY KCG++ KA+R+
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278
Query: 97 LRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
M +D W+AMI G +D + P++VT V VLSAC
Sbjct: 279 FDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSAC 332
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G +D A + F MP ++ WTA+I G R REAL LF M+ + I
Sbjct: 361 TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIE 420
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDP 120
P + T + +L A + VE+ +R M R + + ++G A + +
Sbjct: 421 PTDVTFIGVLMACSHSCL--VEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEA 478
Query: 121 FPTIR-----PDEVTYVGVLSACTHNGN 143
+ IR P+ V + +LS+C + N
Sbjct: 479 YQFIRTMPIEPNAVIWRALLSSCAVHRN 506
>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
Length = 619
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 64/191 (33%), Positives = 85/191 (44%), Gaps = 52/191 (27%)
Query: 4 KDVISWTDIVSGYINRGQ----VDIARQ---YFAQMPERDYVLWTAMIDGYLRVNRFREA 56
K+V +WT I+SGYI G+ +D+ R+ F M E+D V W++MI GY +EA
Sbjct: 172 KNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEA 231
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAY---------------------------------M 83
L LF +M RPD + +V +L A M
Sbjct: 232 LDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDM 291
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTY 131
Y KCG ++ A V R M +KD W A I GLA+S I PD T+
Sbjct: 292 YAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTF 351
Query: 132 VGVLSACTHNG 142
VG+L ACTH G
Sbjct: 352 VGLLCACTHAG 362
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++D A + F M ++D V+W A I G + A LF +M+ S I
Sbjct: 286 TALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIE 345
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
PD T V +L A + G V++ ++ M R FT T I
Sbjct: 346 PDGNTFVGLLCACTH--AGLVDEGRQYFNSMER--VFTLTPEI 384
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 33/130 (25%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
N G + + + F Q E + L+ MI G + + F+E++ ++ M+ + PD FT
Sbjct: 54 NFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPF 113
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKD 104
+L A +Y KCG ++ A +V + K+
Sbjct: 114 LLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKN 173
Query: 105 KFTWTAMIVG 114
WTA+I G
Sbjct: 174 VAAWTAIISG 183
>gi|222628408|gb|EEE60540.1| hypothetical protein OsJ_13880 [Oryza sativa Japonica Group]
Length = 594
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ K+++ T +V GY G+V+IA F MP +D V W+AMI GY ++ EAL LF
Sbjct: 231 VSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEALNLF 290
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ S ++PDE T++ +++A M+ KC
Sbjct: 291 HDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDMFSKC 350
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G + A V M +K+ TWT++I A+ + I+P+ VT++G+L
Sbjct: 351 GSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLL 410
Query: 136 SACTHNG 142
AC H G
Sbjct: 411 YACCHAG 417
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 80/209 (38%), Gaps = 76/209 (36%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V+ AR+ F MP+RD V W M+D Y + + EAL LF M+ S +
Sbjct: 108 TALVRAYAACGRVEDARRVFDGMPDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVV 167
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PD+ I +L+ MY C D+E A+++
Sbjct: 168 PDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEKL 227
Query: 97 LRK-------------------------------MLRKDKFTWTAMIVGLA-ISDPFPT- 123
+ M KD +W+AMI G A S P
Sbjct: 228 YNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEAL 287
Query: 124 ----------IRPDEVTYVGVLSACTHNG 142
++PDE+T + V+SAC + G
Sbjct: 288 NLFHDMQRSGVKPDEITMLSVISACANVG 316
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 18/139 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + +A F MP+++ V WT++I R ALTLF M++ I+P+ T + +L
Sbjct: 351 GSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTFLGLL 410
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDK-------------FTWTAMIVGLAISDPFPT--I 124
Y C G VE+ + + + M+++ + A ++G A +D + +
Sbjct: 411 --YACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQA-ADLIQSMHL 467
Query: 125 RPDEVTYVGVLSACTHNGN 143
RP+ V + +L+AC +G+
Sbjct: 468 RPNVVIWGSLLAACRMHGD 486
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 81/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW +++GY N G V+ Q F +MPER+ W +I GY F E L F
Sbjct: 246 MPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCF 305
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M + P++ T+V +L+A MY K
Sbjct: 306 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 365
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG +E A V M KD TW +MI GLA +D +PD +T++GV
Sbjct: 366 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 425
Query: 135 LSACTHNG 142
L +CTH G
Sbjct: 426 LCSCTHLG 433
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++WT ++SGYI +V +AR+ F PERD VLW M+ GY+ + + A LF
Sbjct: 184 MLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLF 243
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M D + +L Y GDVE +++ +M ++ F+W +I G A +
Sbjct: 244 DTMPYR----DTMSWNTMLNG--YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGC 297
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC G
Sbjct: 298 FFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLG 332
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++V+ ++ Q+ AR F P+ LW A+ GY +RE + LF +M++ ++RP
Sbjct: 62 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 121
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQ----RVLRKMLRKDKFTWTAMI 112
+ FT +L + K G + + V++ L ++F T +I
Sbjct: 122 NCFTFPLVLKS--CAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLI 165
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ A + F M +D + W +MI G +ALTLF +M+ + +PD
Sbjct: 359 LIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPD 418
Query: 72 EFTIVRILTAYMYCKC---GDVEKAQRVLRKMLRK 103
T + +L C C G VE+ M+ +
Sbjct: 419 GITFIGVL-----CSCTHLGLVEEGTSYFNSMVNE 448
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ V+++ +++G + G V AR+ F +MP D V WTA+IDG ++ R EA+ F
Sbjct: 132 MPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCF 191
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + PD T+V ++A MY +C
Sbjct: 192 HSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARC 251
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G V+ A++V ++ ++ +W +MIVG A + + F +R PD VT+ GVL
Sbjct: 252 GQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVL 311
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 312 TACSHAG 318
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y GQVD ARQ F ++ +R V W +MI G+ ++ +A+ F M+ +PD
Sbjct: 244 LIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPD 303
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVGLA-------- 116
T +LTA + G ++ R M R + + ++G A
Sbjct: 304 TVTFTGVLTACSH--AGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMR 361
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P +RP+EV +L+ C +G+
Sbjct: 362 VVESMP-MRPNEVVLGALLAGCRMHGD 387
>gi|302804045|ref|XP_002983775.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
gi|300148612|gb|EFJ15271.1| hypothetical protein SELMODRAFT_118751 [Selaginella moellendorffii]
Length = 363
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SWT +++GYI G + AR+ F MP+R+ W AMI GY++ R +AL +F
Sbjct: 52 MPDKNVVSWTAMITGYIENGCLGEARRLFDAMPQRNVASWNAMISGYVKNGRGWDALEIF 111
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M + + P++ T + + A +MY +C
Sbjct: 112 KLMDLTGMHPNDITFMSAIDACADLQALLEGQILHAEITASGTEPDAYLRNALLHMYGRC 171
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G + A+ + M +D+++W MI A I PD VT+V VL
Sbjct: 172 GSLAMAESLFDDMPDRDRWSWNVMISSYAHGGHTRRSLAFFAEMALDGITPDGVTFVAVL 231
Query: 136 SACTHNG 142
AC+H G
Sbjct: 232 GACSHAG 238
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 18/140 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + A FA++P++D V WT+++ Y EA +F +M N+
Sbjct: 1 MINAYAKGGHLAEALDVFAKIPKKDVVSWTSIVTAYAENGHILEARRIFDKMPDKNV--- 57
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------ 119
+ ++T Y+ C + +A+R+ M +++ +W AMI G +
Sbjct: 58 -VSWTAMITGYIENGC--LGEARRLFDAMPQRNVASWNAMISGYVKNGRGWDALEIFKLM 114
Query: 120 PFPTIRPDEVTYVGVLSACT 139
+ P+++T++ + AC
Sbjct: 115 DLTGMHPNDITFMSAIDACA 134
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW+ +V GY G +D+AR F + P ++ VLWT +I GY REA L+
Sbjct: 245 MPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELY 304
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + +RPD+ ++ IL A MY KC
Sbjct: 305 GKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKC 364
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAI-----------SDPFPT-IRPDEVTYVGV 134
G ++ A V M+ +KD +W +MI G A+ S P PD T+VG+
Sbjct: 365 GCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGL 424
Query: 135 LSACTHNG 142
L ACTH G
Sbjct: 425 LCACTHAG 432
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DV++W ++ G + G+++ A + F +MPERD V W M+DGY + A LF
Sbjct: 183 MKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELF 242
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
M NI + Y K GD++ A+ + + K+ WT +I G A
Sbjct: 243 ERMPQRNIVSWSTMVCG------YSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGF 296
Query: 120 -----------PFPTIRPDEVTYVGVLSACTHNG 142
+RPD+ + +L+AC +G
Sbjct: 297 VREATELYGKMEEAGLRPDDGFLISILAACAESG 330
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 5 DVISWTDIVSGYINRGQ--VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+ ++ Y G +D A F M ERD V W +MI G +R A LF E
Sbjct: 154 DIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDE 213
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M P+ + Y K G++++A + +M +++ +W+ M+ G
Sbjct: 214 M------PERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCG 259
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 81/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW +++GY N G V+ Q F +MPER+ W +I GY F E L F
Sbjct: 288 MPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCF 347
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M + P++ T+V +L+A MY K
Sbjct: 348 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 407
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPTI--------RPDEVTYVGV 134
CG +E A V M KD TW +MI GLA +D +PD +T++GV
Sbjct: 408 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 467
Query: 135 LSACTHNG 142
L +CTH G
Sbjct: 468 LCSCTHLG 475
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++WT ++SGYI +V +AR+ F PERD VLW M+ GY+ + + A LF
Sbjct: 226 MLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLF 285
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M D + +L Y GDVE +++ +M ++ F+W +I G A +
Sbjct: 286 DTMPYR----DTMSWNTMLNG--YANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGC 339
Query: 121 F-------------PTIRPDEVTYVGVLSACTHNG 142
F + P++ T V VLSAC G
Sbjct: 340 FFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLG 374
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++V+ ++ Q+ AR F P+ LW A+ GY +RE + LF +M++ ++RP
Sbjct: 104 NVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRP 163
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQ----RVLRKMLRKDKFTWTAMI 112
+ FT +L + K G + + V++ L ++F T +I
Sbjct: 164 NCFTFPLVLKS--CAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLI 207
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ A + F M +D + W +MI G +ALTLF +M+ + +PD
Sbjct: 401 LIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPD 460
Query: 72 EFTIVRILTAYMYCKC---GDVEKAQRVLRKMLRK 103
T + +L C C G VE+ M+ +
Sbjct: 461 GITFIGVL-----CSCTHLGLVEEGTSYFNSMVNE 490
>gi|449440231|ref|XP_004137888.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
gi|449521725|ref|XP_004167880.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 521
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +SW +++ YI + AR+ F +MPERD V W ++I GY+ V ++ AL LF
Sbjct: 205 MPQTNAVSWNTLLARYIRLNNLVAARKVFEEMPERDVVSWNSIISGYVNVKDYKGALDLF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ NIR E T + IL A MY KC
Sbjct: 265 HSMKQWNIRATEVTFISILGACAELGALEIGKKIHDSLKEKHYRIEGYLGNAIVDMYAKC 324
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-------RPDEVTYVG 133
G++ A V +M K W AMI+GLA+ + F ++ +P+ +T++
Sbjct: 325 GELGLALEVFNEMEMKPVSCWNAMIMGLAVHGHCERALEMFDSMKAEDGDHKPNRITFIA 384
Query: 134 VLSACTHNG 142
+L AC+H G
Sbjct: 385 LLIACSHKG 393
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 86/187 (45%), Gaps = 51/187 (27%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
+SW ++ GY + AR+ F +MP RD V W+AMIDG ++ +REAL LF M+ +
Sbjct: 128 VSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAA 187
Query: 67 ----NIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+R ++ T++ +L A MY KCG
Sbjct: 188 ATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATSLVDMYAKCGA 247
Query: 90 VEKAQRVLRK--MLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
+ +A V R + D W AMI GLA+ + F ++ PDE+TY+G+L
Sbjct: 248 ISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPDEITYLGLL 307
Query: 136 SACTHNG 142
SAC H G
Sbjct: 308 SACVHGG 314
>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 663
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M DVISWT +++ + + G V+ AR YF +MPER+ + W AM+ Y + + + E L L+
Sbjct: 287 MAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLY 346
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M +RPD T V ++ A +Y +C
Sbjct: 347 ILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRC 406
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTI-----RPDEVTYVGVL 135
G +E+AQ + + K+ +W +++ G A + + F + +PD +TY+ +L
Sbjct: 407 GRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAIL 466
Query: 136 SACTHNG 142
S C+H+G
Sbjct: 467 SGCSHSG 473
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 40/169 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ + SW ++ GY ++ A F QMPERD V W +I + ++L F
Sbjct: 54 IEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTF 113
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM +P+ T +L+A MY KC
Sbjct: 114 VEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKC 173
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTIRPDEV 129
G ++ ++RV + + TWT++I G+A + D F +R D V
Sbjct: 174 GLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCV 222
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 33/147 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ +V Y G +D +++ F + E + V WT++I G E +F +M+
Sbjct: 159 DVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMR 218
Query: 65 TSNIRPDEFTIVRIL---------------------------------TAYMYCKCGDVE 91
+ D F + IL T MY KCGD E
Sbjct: 219 KDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFE 278
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS 118
KA M D +WT MI + S
Sbjct: 279 KASLAFETMAAHDVISWTTMITSFSHS 305
>gi|297746380|emb|CBI16436.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 91/169 (53%), Gaps = 32/169 (18%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ SW ++ GY+ G++ A++ F +M ERD V WT +I GY++V F+EAL LF E
Sbjct: 153 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 212
Query: 63 M-QT---------------SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM--LRKD 104
M QT S I+ +E + +L MY KCG+++ A +V L+
Sbjct: 213 MLQTVALDQGRWIHVYIDKSEIKMNERLLASLLD--MYAKCGEIDFAAKVFHDEYGLKLK 270
Query: 105 KFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHN 141
+ W AMI G A+ D F ++ P++VT+V +L+AC+H
Sbjct: 271 VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHG 319
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 18/108 (16%)
Query: 16 YINRGQVDIARQYFAQMPERDYVL------WTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
Y G++D A + F +Y L W AMI GY + +EA+ LF +M+ +
Sbjct: 248 YAKCGEIDFAAKVF----HDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVS 303
Query: 70 PDEFTIVRILTAYMYCKCGDV-----EKAQRVLRKMLRKDKFTWTAMI 112
P++ T V +L A C G + E + V + D W A++
Sbjct: 304 PNKVTFVALLNA---CSHGKLVEEGREAEETVFNMPMAPDATIWGALL 348
>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
Length = 589
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W ++ GY G++D AR F +MPER+ + W+ +IDGY+R EAL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 61 PEMQTSNIRPDEFTIV---------------RILTAY------------------MYCKC 87
M + I+PD V R L +Y MY KC
Sbjct: 299 QRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRP--DEVTYVGVL 135
G ++ A+ + M +K TW MIVGL + + T R D+++ + VL
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVL 418
Query: 136 SACTHNG 142
++CTH G
Sbjct: 419 TSCTHAG 425
Score = 71.6 bits (174), Expect = 9e-11, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 1 MKNKDVISWTDIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ +D SW ++ GY G VD AR+ F QMP+RD V W +MIDGY R R EA L
Sbjct: 207 MRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVL 266
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
F EM P+ I + Y + G+ +A ++ML
Sbjct: 267 FEEM------PERNVISWSIVIDGYVRFGEPNEALEFFQRML 302
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ + I++ Y G+VD AR+ F++ E+D V WTAM+ GY + R +AL LF EM
Sbjct: 255 DQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEML 314
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+I PD +T+ ++++ MY KCG ++
Sbjct: 315 LEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFID 374
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVLSACT 139
A+ V M ++ +W AMIVG A + + F + +PD VT++G+LSAC
Sbjct: 375 DARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACL 434
Query: 140 H 140
H
Sbjct: 435 H 435
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V W + Y G+++ AR F + +++ V W MI GY + + + + L +M+
Sbjct: 189 NVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMR 248
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP---- 120
S PD+ T+ I+ A YC+CG V++A+RV + KD WTAM+VG A +
Sbjct: 249 LSGHMPDQVTMSTIIAA--YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDA 306
Query: 121 --------FPTIRPDEVTYVGVLSACT 139
I PD T V+S+C
Sbjct: 307 LLLFNEMLLEHIEPDSYTLSSVVSSCA 333
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 75/182 (41%), Gaps = 45/182 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW ++S Y G + + F +MP RD V + I G+ + +E+L LF
Sbjct: 84 MLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELF 143
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ P E+TIV IL A MY KC
Sbjct: 144 KRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKC 203
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTI-----------RPDEVTYVGVL 135
G++E+A+ + + +K+ +W MI G A + P I PD+VT ++
Sbjct: 204 GEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTII 263
Query: 136 SA 137
+A
Sbjct: 264 AA 265
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 16/155 (10%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N +++ + ++ Y G +D AR F MP R+ V W AMI G + ++AL LF
Sbjct: 354 NNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFEN 413
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT----AMIVGLA-- 116
M +PD T + IL+A ++C +E+ Q + + T T A +V L
Sbjct: 414 MLQQKFKPDNVTFIGILSACLHCNW--IEQGQEYFDSISNQHGMTPTLDHYACMVNLLGR 471
Query: 117 ---ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
I I+ PD + + +LS C+ G+
Sbjct: 472 TGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLR 98
+T ++ +R N +A L M+ +P D F ++L ++Y K G + AQ +
Sbjct: 25 YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLL--HLYAKFGKLRDAQNLFD 82
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPTIRP--------DEVTYVGVLSACTHN 141
KML++D F+W A++ A S ++ D V+Y ++ + N
Sbjct: 83 KMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGN 133
>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 553
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S+T +V G RG+V AR+ F MPER+ V W AMI GY+ F EA LF
Sbjct: 127 MPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLF 186
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
M PD+ + YCK GDVE A+R+ + KD +W AMI G
Sbjct: 187 EAM------PDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240
Query: 115 ------LAISDPFPTIRPDEVTYVGVLSACT 139
L I ++PD T + +L+AC+
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACS 271
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V++ T +++GY G V+ AR+ F +P +D + W AMI GY+ EA+ L
Sbjct: 189 MPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLH 248
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M ++PD T++ ILTA MY KC
Sbjct: 249 IIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKC 308
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G+V +++ V + +D +W +I A + + P+++T + +L
Sbjct: 309 GNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSML 368
Query: 136 SACTHNG 142
SAC H G
Sbjct: 369 SACGHVG 375
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNR-FREALTLFPEMQTSNIRPDEFTIVRI 78
G V AR+ F MP RD V W A++ R R A LF +M + N+ +
Sbjct: 21 GDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGC 80
Query: 79 LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
L GD++ A + R++ +W AM+ GL
Sbjct: 81 LAH------GDLDAASAYFARAPRRNVASWNAMLAGL 111
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDY----VLWTAMIDGYLRVNRFREA 56
+K +D++SW I++ Y G+ A F +M R + +M+ V R ++
Sbjct: 321 LKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDS 380
Query: 57 LTLFPEMQTS-NIRPDE---FTIVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAM 111
L LF M + I P +V IL + G +EKA ++KM ++ W A+
Sbjct: 381 LELFDLMSSKYAISPSAEHYACVVDILG-----RAGQLEKACSYIKKMPFEAERNVWGAL 435
Query: 112 I 112
+
Sbjct: 436 L 436
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 47/186 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++N++++ T ++ Y G++ AR+ F M RD V W+AMI GY + ++ REAL LF
Sbjct: 252 VRNRNLM--TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + + P++ T+V +L+A Y KC
Sbjct: 310 SEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKC 369
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G ++ A M K+ +TWTA+I G+A + + F ++R P +VT++GVL
Sbjct: 370 GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVL 429
Query: 136 SACTHN 141
AC+H+
Sbjct: 430 MACSHS 435
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y + V A+ F + E V+W A+I Y++ + E + +F M +
Sbjct: 158 SSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVA 217
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
DE T+V ++TA MY KCG++ KA+R+
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRL 277
Query: 97 LRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACT 139
M +D W+AMI G +D + P++VT V VLSAC
Sbjct: 278 FDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACA 332
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
+I T +V Y G +D A + F MP ++ WTA+I G R REAL LF M+
Sbjct: 356 IILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRK 415
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA-- 116
++I P + T + +L A + C VE+ +R M R + + ++G A
Sbjct: 416 ASIEPTDVTFIGVLMACSH-SC-LVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGL 473
Query: 117 ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
I + + IR P+ V + +LS+C + N
Sbjct: 474 IDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 90/190 (47%), Gaps = 49/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTL 59
M K+VIS T ++SGY+N+G D A F + ++D V++ AMI+GY +V+ + +L +
Sbjct: 203 MSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSKVSEYAMRSLEV 262
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+ +MQ N RP+ T I+ A MY K
Sbjct: 263 YIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKLGSALIDMYSK 322
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP--------------TIRPDEVTYV 132
CG V AQRV ML K+ F+WT+MI G + FP +I P+ VT++
Sbjct: 323 CGRVIDAQRVFDHMLEKNVFSWTSMIDGYG-KNGFPDEALELFKKMQIEYSITPNFVTFL 381
Query: 133 GVLSACTHNG 142
L+AC H G
Sbjct: 382 SALTACAHAG 391
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRP 70
++ Y G+V A++ F M E++ WT+MIDGY + EAL LF +MQ +I P
Sbjct: 316 LIDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITP 375
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA--ISDPF 121
+ T + LTA + G VE+ + + M R + + ++G A ++ +
Sbjct: 376 NFVTFLSALTACAHA--GLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQAW 433
Query: 122 PTI-----RPDEVTYVGVLSACTHNGN 143
+ RP+ ++ +LS+C +GN
Sbjct: 434 EFVTRMPERPNSDVWLALLSSCRIHGN 460
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
YI + ARQ F + +R + MI GYL+ + E+L LF ++ S +PD FT
Sbjct: 82 YIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVSGEKPDGFTF 141
Query: 76 VRILTAY-------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
IL A M G + AQ +L+ + KD TA+I
Sbjct: 142 SMILKASTNRVSNGMVGDLGRMVHAQ-ILKFDVEKDDVLCTALI 184
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 27/156 (17%)
Query: 5 DVISWTDIVSGYINR---GQV-DIARQYFAQM----PERDYVLWTAMIDGYLRVNRFREA 56
D +++ I+ NR G V D+ R AQ+ E+D VL TA+ID Y++ R
Sbjct: 137 DGFTFSMILKASTNRVSNGMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNGRVGYG 196
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
T+F M N+ + +++ YM G + A+ + RK L KD + AMI G +
Sbjct: 197 RTVFDVMSEKNV----ISSTSLISGYM--NKGFFDDAEYIFRKTLDKDVVVFNAMIEGYS 250
Query: 117 ISDPFP-------------TIRPDEVTYVGVLSACT 139
+ RP+ T+ ++ AC+
Sbjct: 251 KVSEYAMRSLEVYIDMQRLNFRPNLSTFASIIGACS 286
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ +V ++S Y QVD A F + R V W AMI GY + R EAL F E
Sbjct: 376 DSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFCE 435
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ+ NI+PD FT+V ++ A MY KCG
Sbjct: 436 MQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAKCGA 495
Query: 90 VEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVTYVGVLSA 137
+ A+++ M + TW +MI V L + TI+P++VT++ VLSA
Sbjct: 496 IHTARKLFNMMSERHVITWNSMIDAYGTHGLGKEAVQLFVEMQKGTIKPNDVTFLCVLSA 555
Query: 138 CTHNG 142
C+H+G
Sbjct: 556 CSHSG 560
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ + T +VS Y + A + F +M ERD V W +I GY + + AL L P++
Sbjct: 176 NLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISGYAQNGLTKVALELVPKIF 235
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
RPD TIV +L A MY KC +
Sbjct: 236 EEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSKCDSLG 295
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG-LAISDPFPT-----------IRPDEVTYVGVLSACT 139
A+ + M + TW +MI G + DP ++P +VT + VL AC
Sbjct: 296 TARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACA 355
Query: 140 HNGN 143
+G+
Sbjct: 356 DSGD 359
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 45/173 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S + N G + A + F + + L+ M+ G+ + + AL F M+ N+R
Sbjct: 80 TKLISLFCNYGSLTEAARVFEPIENKLEALYHTMLKGFAKNSSLDSALLFFCRMKHDNVR 139
Query: 70 PDEFTIVRILT---------------------------------AYMYCKCGDVEKAQRV 96
P + +LT +YCKC + A ++
Sbjct: 140 PVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSGFSWNLFAMTAVVSLYCKCRVIGDAYKM 199
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVLSA 137
+M +D W +I G A + + P I RPD VT V VL A
Sbjct: 200 FDRMTERDLVCWNTIISGYAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPA 252
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 45/173 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y + AR F M R V W +MI G + EA LF +M ++
Sbjct: 282 TALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLFKKMMDEGLQ 341
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P + T++ +L A MY KC V+ A +
Sbjct: 342 PTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSKCKQVDFAANL 401
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+ + +W AMI+G A + I+PD T V V+ A
Sbjct: 402 FENLQNRTLVSWNAMILGYAQNGRLNEALNFFCEMQSQNIKPDSFTMVSVIPA 454
>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
Length = 626
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 46/187 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ KDV+SWT +VS Y G +D A++ F MP ++ V W AMI GY +R+ EAL F
Sbjct: 264 QKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYGEALRTFQ 323
Query: 62 EMQTSN-IRPDEFTIVRILTAY---------------------------------MYCKC 87
M RPDE T+V +++A M+ KC
Sbjct: 324 LMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKC 383
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
GDV +AQ + +M + TWT MI G A + + D++ ++ L
Sbjct: 384 GDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAAL 443
Query: 136 SACTHNG 142
+AC H G
Sbjct: 444 AACVHGG 450
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 22/165 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V+G+ G + A+ F +MP R+ + W MI GY A ++F
Sbjct: 200 MPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMF 259
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M + D + +++AY K GD++ A+ + M K+ +W AMI G +
Sbjct: 260 DRMDQ---KKDVVSWTAMVSAY--AKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSR 314
Query: 121 FPT-------------IRPDEVTYVGVLSACTHNGNETFVINSCN 152
+ RPDE T V V+SAC G+ + CN
Sbjct: 315 YGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGS----VEYCN 355
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V ARQ F +M +RD V W ++I Y+ + A+ LF M N+ +
Sbjct: 157 GRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAG-- 214
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP---------DEVT 130
+ + GD+ AQ V +M ++ +W MI G A S R D V+
Sbjct: 215 ----FARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVS 270
Query: 131 YVGVLSACTHNGN 143
+ ++SA G+
Sbjct: 271 WTAMVSAYAKIGD 283
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A+ F +M R + WT MI G+ REAL ++ M + D+ + L
Sbjct: 384 GDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAAL 443
Query: 80 TAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLAIS--------DPFPTI 124
A ++ G +++ + +M+ R + + ++G A + + P +
Sbjct: 444 AACVH--GGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMP-L 500
Query: 125 RPDEVTYVGVLSACTHNGNETFV 147
P V + +LS+C +GN F+
Sbjct: 501 EPSVVIWATLLSSCVAHGNAEFI 523
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 48/187 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ++WT ++SGY ++D A Q F MP++D V WTA+I G+ + AL LF M
Sbjct: 240 RDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERM 299
Query: 64 QTSNIRPDEFTIVRILTAY------------------------------------MYCKC 87
+ P F +V +L A MY KC
Sbjct: 300 LAEGVSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKC 359
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVL 135
GD+ A V +M +D +W +M+ G LAI + +RP VT++ VL
Sbjct: 360 GDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVL 419
Query: 136 SACTHNG 142
+AC+H+G
Sbjct: 420 TACSHSG 426
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G + A F +MPERD++ W +M+ G+ +++L +F EM + +RP
Sbjct: 352 LVDMYSKCGDMTAAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPT 411
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +LTA + G V + +L M
Sbjct: 412 HVTFLAVLTACSH--SGLVSNGRLILESM 438
>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Brachypodium distachyon]
Length = 617
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ + WT +VSGY++ G V+ A Q+F MP R V W A++ GY++ +R +AL +F M
Sbjct: 176 ENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTM 235
Query: 64 -QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ +++RP+E T+ +L MYCKCGD
Sbjct: 236 VRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGD 295
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
++ A ++ +M +D W AMI G A + P+ +T+V VL+A
Sbjct: 296 LDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTA 355
Query: 138 CTHNG 142
C H G
Sbjct: 356 CIHTG 360
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++ V + T +VS Y G +D A + F++M RD + W AMI GY REA+ LF +
Sbjct: 277 SRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEK 336
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGD-----VEKAQRVLRKMLRKDKFT 107
M++ + P+ T V +LTA ++ D E+ Q V R D ++
Sbjct: 337 MKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYS 386
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 11/107 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREA 56
M+ +DVI+W ++SGY + G A + F +M E +++ + A++ +
Sbjct: 306 MRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFG 365
Query: 57 LTLFPEMQTS---NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ F MQ R D ++ + L C+ G +E+A ++R M
Sbjct: 366 MQCFERMQEVYGIEARVDHYSCMVDL----LCRAGSLERAVSLIRSM 408
>gi|6562284|emb|CAB62654.1| putative protein [Arabidopsis thaliana]
Length = 486
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 24/163 (14%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D++SW I++G + G V A + F +MP+++ + W MI YL N +++LF EM
Sbjct: 159 RDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANNPGVSISLFREM 218
Query: 64 QTSNIRPDEFTIVRILTAY------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
+ + +E T+V +L A MY KC +V A+R+ + ++K TW M
Sbjct: 219 VRAGFQGNESTLVLLLNACGRSARLKEALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVM 278
Query: 112 IV----------GLAISDPF--PTIRPDEVTYVGVLSACTHNG 142
I+ GL + + +RPDEVT+VGVL C G
Sbjct: 279 ILAHCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAG 321
>gi|255580945|ref|XP_002531291.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529124|gb|EEF31104.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KDV+SW I++G G +++AR F QMP RD+V W ++I Y F L
Sbjct: 289 LTEKDVVSWNTIIAGCAKAGDLELARTLFDQMPCRDFVSWNSLIAEYANRGDFIIVRDLL 348
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M N+ P+ T+ +++A MYCKC
Sbjct: 349 YDMVAENVVPNNTTMASLISAAAEIGALDQGRWAHGWVIRMQIKIDAVLGSALIDMYCKC 408
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-----------DPFPTIRPDEVTYVGVLS 136
G + A + +++ KD WT MI G A + + P+E+T+V VL+
Sbjct: 409 GSINNAFLIFNEIIEKDVILWTTMITGFAFHGYGSKALELFYEMQANVTPNEITFVSVLA 468
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 469 ACSHSG 474
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 35/141 (24%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y+ G +A + F QMP D V + MI G + EA+ L +M +++P
Sbjct: 165 SLIKVYLENGLFCLAHKIFRQMPAPDVVSFNIMITGCAKQGCGLEAIQLLYDMMALDLKP 224
Query: 71 DEFTIVRILTAY-----------------------------------MYCKCGDVEKAQR 95
DEFT++ +L + MY KC +++ A R
Sbjct: 225 DEFTMLGLLVSCGKLGEARFGKTVHAWIERRKSITSSNLILGNALLDMYVKCQELDLAHR 284
Query: 96 VLRKMLRKDKFTWTAMIVGLA 116
+ KD +W +I G A
Sbjct: 285 TFSALTEKDVVSWNTIIAGCA 305
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 79/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW I+SGY+N G++D A+ +F +MPER+ + WT MI G + E+L LF
Sbjct: 356 MPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLF 415
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M++ P ++ + A MY KC
Sbjct: 416 NRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKC 475
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G VE A + M D +W AMI L I PD +T++ VL
Sbjct: 476 GVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVL 535
Query: 136 SACTHNG 142
S C+H G
Sbjct: 536 STCSHAG 542
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 37/151 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT +++GY+ G++D ARQ+ M E+ V W AMI GY+ F EAL +F
Sbjct: 220 MTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMF 279
Query: 61 PEMQTSNIRPDEFTIVRILT-------------------------------------AYM 83
+M I+ DEFT +L+ A +
Sbjct: 280 RKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATL 339
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y KCG V++A++V +M KD +W A++ G
Sbjct: 340 YWKCGKVDEARQVFNQMPVKDLVSWNAILSG 370
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
Y G+VD ARQ F QMP +D V W A++ GY+ R EA + F EM N+
Sbjct: 340 YWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL 392
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 45/159 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
++ D+++ T +++ + + G ++AR+ F P RD V + AMI GY N A+
Sbjct: 76 IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 135
Query: 59 LFPEMQTSNIRPDEFTIVRILTAY----------------------------------MY 84
LF ++ + RPD FT +L A ++
Sbjct: 136 LFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVF 195
Query: 85 CKCG---------DVEKAQRVLRKMLRKDKFTWTAMIVG 114
KC + A+++ +M +D+ +WT MI G
Sbjct: 196 VKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAG 234
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G V+ A F MP D V W AMI + +AL LF M +I PD
Sbjct: 468 LITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPD 527
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +L+ + G VE+ R + M
Sbjct: 528 RITFLTVLSTCSH--AGLVEEGHRYFKSM 554
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+SWT +V+ Y N+G V+ A Q F MP ++ V W ++I ++ ++ EA+ LF
Sbjct: 299 MLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELF 358
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M S + PD+ T+V IL+ MY KC
Sbjct: 359 HRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKC 418
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G ++ A + M K+ +W +I LA+ + F +++ PDE+T+ G+L
Sbjct: 419 GALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLL 478
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 479 SACSHSG 485
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 33/138 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I++ Y+ + ARQ F + +R V W +MI GY ++ EA+ LF EM + D
Sbjct: 178 ILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEAD 237
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
FT+V +L+A MY KCG ++ A+ V
Sbjct: 238 VFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFD 297
Query: 99 KMLRKDKFTWTAMIVGLA 116
+ML KD +WT+M+ A
Sbjct: 298 QMLDKDVVSWTSMVNAYA 315
Score = 38.5 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 40/76 (52%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V++ ++S + G + A F Q+P+ + ++ +I GY N ++L LF +M +
Sbjct: 71 VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130
Query: 66 SNIRPDEFTIVRILTA 81
+ P++FT +L A
Sbjct: 131 AGPMPNQFTFPFVLKA 146
>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 656
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ +W +++ Y+++G + A F MPE++ V W A+IDGY R +L
Sbjct: 294 MPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYL 353
Query: 61 PEMQTSNIRPDEFTIVRILTA------------------------------YMYCKCGDV 90
M SN +P+E TI +LTA Y +CGDV
Sbjct: 354 ILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRCGDV 413
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSAC 138
A+ + ++ KD +WTAMI+ + P +PD +T+VG+LSAC
Sbjct: 414 LSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSAC 473
Query: 139 THNG 142
+H G
Sbjct: 474 SHAG 477
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT V GY G +D AR F QMPE++ + WTAM+ Y+ + EA LF
Sbjct: 170 MPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELF 229
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M N+ I + A + +A ++ M ++++ +WT ++ GLA
Sbjct: 230 YQMPQRNLYSWNIMISGCINA------NRLNEAIQLFNSMPQRNEVSWTTLVTGLA 279
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 65/110 (59%), Gaps = 8/110 (7%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++ + ++SGY+ G++D ARQ F QM ER+ WT+++ GY ++ EA+ LF +M
Sbjct: 111 RNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQM 170
Query: 64 QTSNIRPDEFTIVRILTAYM-YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
N +V TA + Y + G +++A+ + +M K+ WTAM+
Sbjct: 171 PEKN-------VVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMV 213
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SWT +VSGY G VD A + F QMPE++ V WT + GY + EA +F
Sbjct: 139 MVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIF 198
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+M NI I Y + ++++A + +M +++ ++W MI G
Sbjct: 199 NQMPEKNI------IAWTAMVKSYVENDEIDEAFELFYQMPQRNLYSWNIMISG 246
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +S+ +++ Y+ + A F ++PER+ V +AMI GY+R R +A +F
Sbjct: 77 MPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISGYVRAGRLDKARQVF 136
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M N+ F+ +++ Y K G+V++A R+ +M K+ +WT +VG A
Sbjct: 137 DQMVERNV----FSWTSLVSGYF--KIGNVDEAMRLFNQMPEKNVVSWTTAVVGYA 186
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++SG IN +++ A Q F MP+R+ V WT ++ G R A F
Sbjct: 232 MPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYF 291
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M T +I ++TAY+ G + +A + M K+ +W A+I G A + P
Sbjct: 292 DHMPTKDIA----AWNAMITAYV--DQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGP 345
Query: 121 F------------PTIRPDEVTYVGVLSAC 138
+P+E T VL+AC
Sbjct: 346 ESNSLRYLILMLRSNFKPNETTITSVLTAC 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78
RG+V AR+ F +MP RD V + +MI YL+ +A LF E+ N+ D I
Sbjct: 64 RGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSAMISG- 122
Query: 79 LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y + G ++KA++V +M+ ++ F+WT+++ G
Sbjct: 123 -----YVRAGRLDKARQVFDQMVERNVFSWTSLVSG 153
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + +V+ Y G V AR F Q+ +D V WTAMI Y AL +F M
Sbjct: 395 QDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARM 454
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
S +PD T V +L+A + G V+K Q + M
Sbjct: 455 LRSGAKPDGITFVGLLSACSH--AGLVKKGQMLFDSM 489
>gi|125563696|gb|EAZ09076.1| hypothetical protein OsI_31338 [Oryza sativa Indica Group]
Length = 548
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 84/185 (45%), Gaps = 43/185 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W +++ Y+ ++D A +F +MP RD V WT MI G + R EA+ LF
Sbjct: 221 MPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNAGRAAEAVELF 280
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
M+ +N + D T+V +LTA MY K
Sbjct: 281 WRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVK 340
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI--RPDEVTYVGVLSA 137
CG VE A R+ M R+ +WT MI GLAI D F + RPD T + VL A
Sbjct: 341 CGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQERPDGATLLAVLLA 400
Query: 138 CTHNG 142
C++ G
Sbjct: 401 CSNAG 405
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y+ G V+ A + F MP R V WT MI G R EAL LF MQ RPD
Sbjct: 334 LINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE---RPD 390
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T++ +L A G V+ ++ + M R
Sbjct: 391 GATLLAVLLA--CSNAGRVDDGRQYFQSMER 419
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W ++ G+ + G V+ F QM ER V W +MI + R REAL LF
Sbjct: 163 MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELF 222
Query: 61 PEMQTSNIRPDEFTIVRIL-----------------TAY-----------------MYCK 86
EM PDE T+V +L TA YCK
Sbjct: 223 CEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCK 282
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT------IRPDEVTYVG 133
GD+E A + RKM R++ +W +I G A++ D F + P+E T++G
Sbjct: 283 SGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLG 342
Query: 134 VLSACTHNG 142
VL+ C++ G
Sbjct: 343 VLACCSYTG 351
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 47/190 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W +V G+ + G V +F QM ER V W +MI + R REAL LF
Sbjct: 685 MPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELF 744
Query: 61 PEMQTSNIRPDEFTIVRIL-----------------TAY-----------------MYCK 86
EM PDE T+V +L TA YCK
Sbjct: 745 CEMIDQGFDPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDFYCK 804
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT------IRPDEVTYVG 133
GD+E A + RKM R++ +W MI G A++ D F + P+E T++G
Sbjct: 805 SGDLEAATAIFRKMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLG 864
Query: 134 VLSACTHNGN 143
VL+ C++ G
Sbjct: 865 VLACCSYTGQ 874
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +++GY G++++AR+ F +MP +D V W+ MI G+ F EA + F
Sbjct: 198 MPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFF 257
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
E+Q +RP+E ++ +L+A Y KC
Sbjct: 258 RELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKC 317
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGV 134
G+V AQ V +++ ++ +WT+M+ LA+ IRPDE+ ++ +
Sbjct: 318 GNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISL 377
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 378 LYACSHAG 385
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G V AR+ F +MPE + + W AM+ R + LF M N+
Sbjct: 145 TTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLM 204
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------ 123
+ Y K G++E A+ + +M KD +W+ MIVG A + F
Sbjct: 205 SWNVMLAG------YTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFR 258
Query: 124 ------IRPDEVTYVGVLSACTHNGNETF 146
+RP+E + GVLSAC G F
Sbjct: 259 ELQRKGMRPNETSLTGVLSACAQAGALEF 287
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQ-MPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G V +A+ F + M ER+ V WT+M+ EA+ +F +M+ S IRP
Sbjct: 310 LLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRP 369
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
DE + +L Y G VE+ KM
Sbjct: 370 DEIAFISLL--YACSHAGLVEQGCEYFDKM 397
>gi|357498695|ref|XP_003619636.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494651|gb|AES75854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 403
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 24/163 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ SW ++ Y+ G + A+ F +M ERD V W+ +I GY++V F E L F
Sbjct: 13 DRDLYSWNTMIGVYVGSGNMIQAKNLFDEMHERDVVSWSTIIAGYVQVGCFMEDLEFFHN 72
Query: 63 MQTSNIRPDEFTIV---------RILTAY--MYCKCGDVEKAQRVLRKMLRKDK-FTWTA 110
M S ++P+E+T+V R+L + MY KCG+++ A V + K K + W A
Sbjct: 73 MLQSEVKPNEYTMVSALAIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNA 132
Query: 111 MIVGLAISD------------PFPTIRPDEVTYVGVLSACTHN 141
MI G A+ + P++VT++ +L+AC+H
Sbjct: 133 MIGGFAMHGKPEEAISLFEQMKVERVSPNKVTFIALLNACSHG 175
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++ T ++ + G V+ A + F +M RD V WT +IDG +R F L +F
Sbjct: 186 MPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVF 245
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ + P+E T V +L+A MY +C
Sbjct: 246 REMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRC 305
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
GD+++AQ + + KD T+ +MI GLA+ +RP+ +T+VGVL
Sbjct: 306 GDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVL 365
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 366 NACSHGG 372
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VI T ++ Y+ +D AR+ F +M +RD V W+ MI GY + R E+L LF M
Sbjct: 283 QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 342
Query: 64 QTSNIRPDEFTIVRI--------------------------LTAY-------MYCKCGDV 90
+ ++ RP+E T+V + LT+Y MY +CG V
Sbjct: 343 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 402
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGVLSAC 138
+A+ V +M +K TW +MI GLA++ D ++P+E+T+V +L+AC
Sbjct: 403 GRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC 462
Query: 139 THNG 142
TH G
Sbjct: 463 THAG 466
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++GY G VD AR+ F M R W +MI Y FREALTLF
Sbjct: 180 MPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLF 239
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
M + RP+ TI + + MY KC
Sbjct: 240 DRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCR 299
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
++ A+R +M ++D W+ MI G A + P ++ RP+EVT VGV+S
Sbjct: 300 AIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVIS 359
Query: 137 ACTHNGNETFV 147
AC G++ V
Sbjct: 360 ACAQLGSDELV 370
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 18/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + TA++D Y + A+++F EM D I ++T Y K GDV+KA+R
Sbjct: 153 DVFVLTALVDFYAKNGDMESAVSVFDEMPVK----DPIPINCLITGY--SKAGDVDKARR 206
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+ M R+ +W +MI A F RP+ +T V S C +G+
Sbjct: 207 LFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGD 266
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRP 70
++ Y G V AR F++M ++ + W +MI G L +N F E A++L+ +M + ++P
Sbjct: 392 LIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRG-LAMNGFAEDAISLYEKMAENGVQP 450
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+E T V +L A + G V++ +M R+
Sbjct: 451 NEITFVALLAACTH--AGLVDQGMAFFEEMKRE 481
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ W ++S Y G + A+Q F +MP++D W ++ GY++ R+ EA L +M
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
++PD++T V +L A M+ KCG V+
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
A +V + R+D TWT+MI GLA F ++PD+V +V +L AC
Sbjct: 258 DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317
Query: 140 H 140
H
Sbjct: 318 H 318
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 75/176 (42%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS ++N G + A F MPERD V W +I G+++ + A F MQ S ++PD
Sbjct: 549 LVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPD 608
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ T +L A MY KCG ++ A V
Sbjct: 609 QITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFH 668
Query: 99 KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
+ +K+ ++WT+MI G A ++PD +T+VG LSAC H G
Sbjct: 669 NLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAG 724
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 45/182 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ T +++ +I G VD A + F +P RD + WT+MI G R +F++A LF
Sbjct: 237 DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQV 296
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+ ++PD+ V +L A MY KCG
Sbjct: 297 MEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGS 356
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSA 137
+E A V + ++ +WTAMI G A + + F I P+ VT++ +L A
Sbjct: 357 MEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGA 416
Query: 138 CT 139
C+
Sbjct: 417 CS 418
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++S Y G +D A F +P+++ WT+MI GY + R +EAL LF +MQ
Sbjct: 643 DVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQ 702
Query: 65 TSNIRPDEFTIVRILTA 81
++PD T V L+A
Sbjct: 703 QEGVKPDWITFVGALSA 719
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 45/174 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G ++ A + F + R+ V WTAMI G+ + R EA F +M S I
Sbjct: 345 TALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIE 404
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P+ T + IL A MY KCG + A+ V
Sbjct: 405 PNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNV 464
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
++ +++ W AMI + + I+PD T+ +L+ C
Sbjct: 465 FERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVC 518
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G + AR F ++ +++ V W AMI Y++ ++ A+ F + I+
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PD T IL M+ CGD+ A +
Sbjct: 506 PDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNL 565
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
M +D +W +I G D F ++PD++T+ G+L+AC
Sbjct: 566 FNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACA 620
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 14/94 (14%)
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF 121
++ S I+PD F +++ MY KCG+ A+++ +M KD ++W ++ G +
Sbjct: 129 HIKFSKIQPDIFMWNMLIS--MYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186
Query: 122 PT------------IRPDEVTYVGVLSACTHNGN 143
++PD+ T+V +L+AC N
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKN 220
>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M KD+ SW +VSGY++ G + AR F QMP ++ V W+ MI GY R + +AL L
Sbjct: 193 MPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALEL 252
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
F + +I+PDE I+ I++A MY K
Sbjct: 253 FERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAK 312
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPF--PTIRPDEVTYVGV 134
CG +EKA ++ KD ++ MI LA + D I+PD VT++GV
Sbjct: 313 CGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGV 372
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 373 LTACNHGG 380
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SW ++SGY N +VDIAR++F +MPER+ V WT+MI GY++ EA LF
Sbjct: 131 MCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLF 190
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS- 118
M ++ + + YM GD R L +M K+ TW+ MI G A +
Sbjct: 191 DSMPVKDLASWNVMV----SGYM--DIGDYTNGARCLFDQMPMKNLVTWSTMIGGYARNG 244
Query: 119 DPFPT-----------IRPDEVTYVGVLSACTHNG 142
P I+PDE +G++SAC+ G
Sbjct: 245 QPLKALELFERFKEQDIKPDETFILGIISACSQLG 279
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G D A + F ++ + + LWT++I GY+ ++ EA +LF +M+ I FTI
Sbjct: 45 YSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTI 104
Query: 76 VRILTAYMYCKCGDVEKAQRV----LRKMLRKDKFTWTAMIVGLAISD 119
+L A + + Q V +M KD +W MI G +D
Sbjct: 105 SSVLKA--LARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNND 150
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D+ +T ++ Y G ++ A Q F +D + ++ MI R+A+ LF +M
Sbjct: 298 SDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKM 357
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKM 100
Q +NI+PD T + +LTA C G V++ ++ ++M
Sbjct: 358 QRANIKPDSVTFLGVLTA---CNHGGLVDEGRKYFKQM 392
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88
F +M E+D V W MI GY +R A F M N+ I Y K G
Sbjct: 128 FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICG------YVKAG 181
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVG 114
D+ +AQ + M KD +W M+ G
Sbjct: 182 DMAEAQVLFDSMPVKDLASWNVMVSG 207
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V +W ++ GY G + A F QMP RD + WT M++ Y R R++E + LF
Sbjct: 168 MPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALF 227
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
++ + PDE T+ +++A MY KC
Sbjct: 228 HDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKC 287
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G ++ A V K+ K+ F W +I GLA IRP+ VT++ +L
Sbjct: 288 GSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISIL 347
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 348 TACTHAG 354
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ V T ++ Y G V +R+ F MPERD WT MI ++R A LF E
Sbjct: 108 DSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDE 167
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAM----------- 111
M N+ I Y K G+ E A+ + +M +D +WT M
Sbjct: 168 MPEKNVATWNAMIDG------YGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYK 221
Query: 112 -IVGLAISDPFPTIRPDEVTYVGVLSACTHNG 142
++ L + PDEVT V+SAC H G
Sbjct: 222 EVIALFHDVIDKGMIPDEVTMTTVISACAHLG 253
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G +D+A F ++ ++ W +IDG EAL +F EM+
Sbjct: 273 DVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEME 332
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
IRP+ T + ILTA + G +E+ +R M++
Sbjct: 333 RKRIRPNAVTFISILTACTH--AGFIEEGRRWFMSMVQ 368
>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
Length = 851
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ V++WT +++GY+ +V++A F M ++ V W AMI GY+ +R + L LF
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRA 274
Query: 63 MQTSNIRPDEFTIVRILTA-------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
M IRP+ + L MYCKCG++ A ++ M +KD W AMI G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGY 334
Query: 116 AISDPFP------------TIRPDEVTYVGVLSACTHNG 142
A IRPD +T+V VL AC H G
Sbjct: 335 AQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 373
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 21/153 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW +++GY RG+++ AR+ F M E++ V W AMI GY+ +A F
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFF 209
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAISD 119
+ ++T YM K VE A+ + + M + K+ TW AMI G + +
Sbjct: 210 KVAPVRGV----VAWTAMITGYM--KAKKVELAEAMFKDMTVNKNLVTWNAMISGY-VEN 262
Query: 120 PFPT-------------IRPDEVTYVGVLSACT 139
P IRP+ L CT
Sbjct: 263 SRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCT 295
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D S+ ++S Y+ + A+ +F +MP +D W MI GY R +A LF M
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM 182
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N E + +++ Y+ +CGD+EKA + + WTAMI G
Sbjct: 183 EKN----EVSWNAMISGYI--ECGDLEKASHFFKVAPVRGVVAWTAMITG 226
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 1 MKNKDVISWTDIVSGYI-NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K+ I+W ++ G + ++ A Q F ++PE D + M+ Y+R F +A +
Sbjct: 87 MRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSF 146
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F M D + ++T Y + G++EKA+ + M+ K++ +W AMI G
Sbjct: 147 FDRMPFK----DAASWNTMITG--YARRGEMEKARELFYSMMEKNEVSWNAMISG 195
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFPEMQTSNIRP 70
I++ + G +D A + F M ++ + W +++ G + +R EA LF E+ P
Sbjct: 67 IIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP----EP 122
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
D F+ +L+ Y+ + + EKAQ +M KD +W MI G A
Sbjct: 123 DTFSYNIMLSCYV--RNVNFEKAQSFFDRMPFKDAASWNTMITGYA 166
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 57/160 (35%), Gaps = 53/160 (33%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK KDV++W ++SGY G D +AL LF
Sbjct: 319 MKKKDVVAWNAMISGYAQHGNAD-------------------------------KALCLF 347
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIV 113
EM + IRPD T V +L A + G V M+R D +T ++
Sbjct: 348 REMIDNKIRPDWITFVAVLLACNH--AGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLL 405
Query: 114 G----------LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
G L S PF RP + +L AC + N
Sbjct: 406 GRAGKLEEALKLIRSMPF---RPHAAVFGTLLGACRVHKN 442
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +++GY G + AR +F +MP+RD + W A+I GY + EAL LF
Sbjct: 323 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 382
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM+ R + T L+ MYCKC
Sbjct: 383 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 442
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVL 135
G+++ A V + K+ +W MI G A S I PD+VT VGVL
Sbjct: 443 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 502
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 503 SACSHTG 509
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV +WT +VSGY+ G +D AR+ F MPE++ V W A+I GY++ R +A LF M
Sbjct: 264 RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAM 323
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
N+ I Y + GD+ +A+ +M ++D +W A+I G A S
Sbjct: 324 PCQNVSSWNTMITG------YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 372
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ISW ++ GY+ R ++ AR F +MPERD V W MI GY + EA LF E
Sbjct: 203 ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-- 260
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
S +R D FT +++ Y+ + G +++A+RV M K+ +W A+I G
Sbjct: 261 -SPVR-DVFTWTAMVSGYV--QNGMLDEARRVFDGMPEKNSVSWNAIIAG 306
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++SG + + AR F QMPERD V W AM+ GY + +EA +F
Sbjct: 106 MPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIF 165
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----- 115
EM N + +L AY+ + G +E A+R+ + +W M+ G
Sbjct: 166 DEMPCKN----SISWNGMLAAYV--QNGRIEDARRLFESKADWELISWNCMMGGYVKRNR 219
Query: 116 -----AISDPFPTIRPDEVTYVGVLSACTHNG 142
I D P DEV++ ++S NG
Sbjct: 220 LVDARGIFDRMP--ERDEVSWNTMISGYAQNG 249
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SGY G++ A++ F + P RD WTAM+ GY++ EA +F
Sbjct: 230 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF 289
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N + I+ Y+ CK +++A+ + M ++ +W MI G A +
Sbjct: 290 DGMPEKN----SVSWNAIIAGYVQCK--RMDQARELFEAMPCQNVSSWNTMITGYAQNGD 343
Query: 121 FPTIRP--------DEVTYVGVLSACTHNG 142
R D +++ +++ +G
Sbjct: 344 IAQARNFFDRMPQRDSISWAAIIAGYAQSG 373
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 6/113 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ISW ++SG ++ + +ARQ F +MP RD V W MI G +R R A LF
Sbjct: 75 MPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLF 134
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
+M P+ + Y + G V++A+ + +M K+ +W M+
Sbjct: 135 DQM------PERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLA 181
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 18/150 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D++ W ++ ++ GQ D A + F MP R + W AMI G L ++F A LF +
Sbjct: 46 DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------ 116
M T ++ I + + ++ A+ + +M +D +W AM+ G A
Sbjct: 106 MPTRDLVSWNVMISGCV------RYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVK 159
Query: 117 ----ISDPFPTIRPDEVTYVGVLSACTHNG 142
I D P + +++ G+L+A NG
Sbjct: 160 EAKEIFDEMPC--KNSISWNGMLAAYVQNG 187
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G +D A F + E++ V W MI GY R +EAL LF M+ + I PD+ T+
Sbjct: 439 YCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTM 498
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISD----------- 119
V +L+A + G V+K M + T +T MI L +
Sbjct: 499 VGVLSACSH--TGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 556
Query: 120 -PFPTIRPDEVTYVGVLSACTHNGN 143
PF PD T+ +L A +GN
Sbjct: 557 MPF---EPDAATWGALLGASRIHGN 578
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +V+GY G +D A+ F +MP+RD + W AMI GY + + EAL LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ + + L++ MY KC
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFP-TIRPDEVTYVGVLS 136
G +E+A V + KD +W MI G LA+ + TI+PD+VT VGVLS
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLS 513
Query: 137 ACTHNG 142
AC+H G
Sbjct: 514 ACSHTG 519
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV +WT +VSG++ G +D A + F +MPE++ V W AMI GY++ + +A LF +M
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ N + Y +CG++++A+ + +M ++D +W AMI G A S
Sbjct: 335 PSRNTSSWNTMVTG------YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D++ W +S Y+ +GQ + A F M R V + AMI GYL N+F A +F +
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M PD I + Y K G++ A+ + +M KD +W AM+ G A +
Sbjct: 117 M------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170
Query: 123 TIR--------PDEVTYVGVLSACTHNG 142
R +E+++ G+LSA NG
Sbjct: 171 EARKIFDQMLVKNEISWNGLLSAYVQNG 198
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ISW ++SGY+ G + AR F QMPE+D V W AM+ G+ + EA +F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+M N E + +L+AY+ + G +E A+R+ + + +W ++ G
Sbjct: 177 DQMLVKN----EISWNGLLSAYV--QNGRIEDARRLFDSKMDWEIVSWNCLMGG 224
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+++SW ++ GY+ + ++D AR F +MP RD + W MI GY + EA LF E+
Sbjct: 214 EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP 273
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
++ F +++ ++ + G +++A R+ +M K++ +W AMI G S
Sbjct: 274 IRDV----FAWTAMVSGFV--QNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKA 327
Query: 125 R 125
R
Sbjct: 328 R 328
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + +++ ++SGY++ + D AR+ F +MP+RD + W M+ GY++ A LF
Sbjct: 86 MRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M P++ + + + G VE+A+++ +ML K++ +W ++
Sbjct: 146 NQM------PEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLL 191
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ ISW ++S Y+ G+++ AR+ F + + V W ++ GY+R R +A +LF M
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
D+ + ++T Y + G + +A+R+ ++ +D F WTAM+ G
Sbjct: 242 PVR----DKISWNIMITG--YAQNGLLSEARRLFEELPIRDVFAWTAMVSGF 287
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW +++GY+ Q++ AR+ F QMP R+ W M+ GY + +A LF
Sbjct: 303 MPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
EM P I Y + G E+A + KM R
Sbjct: 363 DEM------PQRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
I+ +++ Y G ++ A F + E+D V W MI GY R +EAL LF M+ +
Sbjct: 441 IAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT 500
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI--------- 112
I+PD+ T+V +L+A + G V+K M + T +T MI
Sbjct: 501 -IKPDDVTLVGVLSACSH--TGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRL 557
Query: 113 ---VGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ L S PF PD T+ +L A +G+
Sbjct: 558 DEALNLMKSMPF---YPDAATWGALLGASRIHGD 588
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+ W ++ GY+ G + +R+ F MP + V W MI G + F+EA+ +F +MQ
Sbjct: 189 NVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQ 248
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ P+ T+V +L A MY KCG ++
Sbjct: 249 LGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSID 308
Query: 92 KAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSAC 138
KA +V + +K+ TW+A+I GLA+ D F + P +V Y+GVLSAC
Sbjct: 309 KAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSAC 368
Query: 139 THNG 142
+H G
Sbjct: 369 SHAG 372
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D + + ++ Y G +D A Q F + +++ + W+A+I G R R+AL F M
Sbjct: 290 DDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRM 349
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVG-- 114
Q + + P + + +L+A + G VE+ + + M+ R + + ++G
Sbjct: 350 QQAGVTPSDVVYIGVLSACSH--AGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRA 407
Query: 115 --------LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
L ++ P ++PD+V +L AC +GN
Sbjct: 408 GCLEEAEQLILNMP---VKPDDVILKALLGACKMHGN 441
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 85/186 (45%), Gaps = 44/186 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +V+GY G +D A+ F +MP+RD + W AMI GY + + EAL LF
Sbjct: 334 MPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLF 393
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ + + L++ MY KC
Sbjct: 394 IKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKC 453
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFP-TIRPDEVTYVGVLS 136
G +E+A V + KD +W MI G LA+ + TI+PD+VT VGVLS
Sbjct: 454 GSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLS 513
Query: 137 ACTHNG 142
AC+H G
Sbjct: 514 ACSHTG 519
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 67/115 (58%), Gaps = 6/115 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV +WT +VSG++ G +D A + F +MPE++ V W AMI GY++ + +A LF +M
Sbjct: 275 RDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ N + Y +CG++++A+ + +M ++D +W AMI G A S
Sbjct: 335 PSRNTSSWNTMVTG------YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQS 383
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D++ W +S Y+ +GQ + A F M R V + AMI GYL N+F A +F +
Sbjct: 57 DSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEK 116
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M PD I + Y K G++ A+ + +M KD +W AM+ G A +
Sbjct: 117 M------PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVE 170
Query: 123 TIR--------PDEVTYVGVLSACTHNG 142
R +E+++ G+LSA NG
Sbjct: 171 EARKIFDQMLVKNEISWNGLLSAYVQNG 198
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ISW ++SGY+ G + AR F QMPE+D V W AM+ G+ + EA +F
Sbjct: 117 MPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIF 176
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+M N E + +L+AY+ + G +E A+R+ + + +W ++ G
Sbjct: 177 DQMLVKN----EISWNGLLSAYV--QNGRIEDARRLFDSKMDWEIVSWNCLMGG 224
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+++SW ++ GY+ + ++D AR F +MP RD + W MI GY + EA LF E+
Sbjct: 214 EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP 273
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
++ F +++ ++ + G +++A R+ +M K++ +W AMI G S
Sbjct: 274 IRDV----FAWTAMVSGFV--QNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKA 327
Query: 125 R 125
R
Sbjct: 328 R 328
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + +++ ++SGY++ + D AR+ F +MP+RD + W M+ GY++ A LF
Sbjct: 86 MRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALF 145
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M P++ + + + G VE+A+++ +ML K++ +W ++
Sbjct: 146 NQM------PEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNGLL 191
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 6/112 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ ISW ++S Y+ G+++ AR+ F + + V W ++ GY+R R +A +LF M
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
D+ + ++T Y + G + +A+R+ ++ +D F WTAM+ G
Sbjct: 242 PVR----DKISWNIMITG--YAQNGLLSEARRLFEELPIRDVFAWTAMVSGF 287
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW +++GY+ Q++ AR+ F QMP R+ W M+ GY + +A LF
Sbjct: 303 MPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILF 362
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
EM P I Y + G E+A + KM R
Sbjct: 363 DEM------PQRDCISWAAMISGYAQSGQSEEALHLFIKMKR 398
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 23/154 (14%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
I+ +++ Y G ++ A F + E+D V W MI GY R +EAL LF M+ +
Sbjct: 441 IAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT 500
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI--------- 112
I+PD+ T+V +L+A + G V+K M + T +T MI
Sbjct: 501 -IKPDDVTLVGVLSACSH--TGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRL 557
Query: 113 ---VGLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ L S PF PD T+ +L A +G+
Sbjct: 558 DEALNLMKSMPF---YPDAATWGALLGASRIHGD 588
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 87/177 (49%), Gaps = 45/177 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++D AR+ F +M RD V W+AMI GY + +R REAL +F EMQ + +
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
P++ T+V +L+A Y KCG ++ A +
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKA 430
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACTHN 141
M ++ +TWTA+I G+A + + F + I P +VT++GVL AC+H
Sbjct: 431 FESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHG 487
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ Y + G V A F + + + W AMI GY++ ++E + +F M
Sbjct: 205 DQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGML 264
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
DE T++ + TA MY KCG+++
Sbjct: 265 EVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELD 324
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
KA+R+ +M +D W+AMI G SD + P++VT V VLSAC
Sbjct: 325 KARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACA 384
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
VI T +V Y G + A + F MP R+ WTA+I G R REAL LF M
Sbjct: 408 VILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLE 467
Query: 66 SNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
+NI P + T + +L A C G VE+ +R M R + + ++G A
Sbjct: 468 ANIEPTDVTFIGVLLA---CSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAG 524
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
I + + IR P+ V + +LSACT + N
Sbjct: 525 LIDEAYQFIRNMPIEPNAVVWRALLSACTVHKN 557
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VI T ++ Y+ +D AR+ F +M +RD V W+ MI GY + R E+L LF M
Sbjct: 234 QNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERM 293
Query: 64 QTSNIRPDEFTIVRI--------------------------LTAY-------MYCKCGDV 90
+ ++ RP+E T+V + LT+Y MY +CG V
Sbjct: 294 KATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHV 353
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFP--------TIRPDEVTYVGVLSAC 138
+A+ V +M +K TW +MI GLA++ D ++P+E+T+V +L+AC
Sbjct: 354 GRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAAC 413
Query: 139 THNG 142
TH G
Sbjct: 414 THAG 417
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 80/191 (41%), Gaps = 44/191 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++GY G VD AR+ F M R W +MI Y FREAL LF
Sbjct: 131 MPVKDPIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALF 190
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
M + RP+ TI + + MY KC
Sbjct: 191 DRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCR 250
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
++ A+R +M ++D W+ MI G A + P ++ RP+EVT VGV+S
Sbjct: 251 AIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVIS 310
Query: 137 ACTHNGNETFV 147
AC G++ V
Sbjct: 311 ACAQLGSDELV 321
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D + TA++D Y + A++ F EM D I ++T Y K GDV+KA+R
Sbjct: 104 DVFVLTALVDFYAKNGDMESAVSAFDEMPVK----DPIPINCLITGY--SKAGDVDKARR 157
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+ M R+ +W +MI A F RP+ +T V S C +G+
Sbjct: 158 LFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGD 217
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNIRP 70
++ Y G V AR F++M ++ + W +MI G L +N F E A++L+ +M + ++P
Sbjct: 343 LIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRG-LAMNGFAEDAISLYEKMAENGVQP 401
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+E T V +L A + G V++ +M R+
Sbjct: 402 NEITFVALLAACTH--AGLVDQGMAFFEEMKRE 432
>gi|297828245|ref|XP_002882005.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
gi|297327844|gb|EFH58264.1| hypothetical protein ARALYDRAFT_903974 [Arabidopsis lyrata subsp.
lyrata]
Length = 408
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 90/219 (41%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW ++ GY+ G+++ A+ F MP RD V MIDGY ++ +A TLF
Sbjct: 42 MPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLF 101
Query: 61 PEM--------------------------------QTSNIRPDEFTIVRILTAY------ 82
+M + S++ PDE T+V IL+A
Sbjct: 102 DQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRL 161
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A V + K W AMI GL
Sbjct: 162 SKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGL 221
Query: 116 AISDPFP------------TIRPDEVTYVGVLSACTHNG 142
A+ +I PD++T+VGVL+AC+H+G
Sbjct: 222 AVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSG 260
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +S+T +++GY ++G +D AR+ F ++P RD V W AMI GY + R EA+ F EM
Sbjct: 192 RDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEM 251
Query: 64 QTSNIRPDEFTIVRILTAY----------------------------------MYCKCGD 89
+ + + P+ T++ +L+A MY KCGD
Sbjct: 252 RRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGD 311
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+E+A + K+ K+ +W MI G + I P++VT++ +L A
Sbjct: 312 LEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPA 371
Query: 138 CTHNG 142
C + G
Sbjct: 372 CANLG 376
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G ++ A F ++ +++ V W MI GY ++ ++EAL LF M SNI P+
Sbjct: 302 LIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T + IL A MY KCGD+ A+R+
Sbjct: 362 DVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRI 421
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
M K TW AMI G A+ T PD++T+VGVL+AC H G
Sbjct: 422 FDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAG 479
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MKN V WT ++ Y G + +A++ F M + W AMI G+ AL LF
Sbjct: 395 MKNT-VALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLF 453
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRKDKFT-----WTAMIVG 114
M + PD+ T V +LTA CK G + +R M++ K + + MI
Sbjct: 454 SRMTSEGFVPDDITFVGVLTA---CKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDL 510
Query: 115 LAISDPFP---------TIRPDEVTYVGVLSAC 138
+ F ++PD + +L AC
Sbjct: 511 FGRAGLFDEAETLVKNMEMKPDGAIWCSLLGAC 543
>gi|115473893|ref|NP_001060545.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|24414187|dbj|BAC22429.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113612081|dbj|BAF22459.1| Os07g0662700 [Oryza sativa Japonica Group]
gi|125559498|gb|EAZ05034.1| hypothetical protein OsI_27217 [Oryza sativa Indica Group]
gi|125601406|gb|EAZ40982.1| hypothetical protein OsJ_25464 [Oryza sativa Japonica Group]
Length = 544
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 62/184 (33%), Positives = 83/184 (45%), Gaps = 48/184 (26%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
++WT +V+G G V AR+ F +MP RD V W AM+ G R EAL LF M
Sbjct: 107 VTWTSMVAGLCRAGDVAAARRLFEEMPVRDLVSWNAMMSGLAGNRRPVEALCLFRRMMAE 166
Query: 67 NIRPDEFTIV---------------RILTAY--------------------MYCKCGDVE 91
P+ T++ + + A+ MY KCG VE
Sbjct: 167 GFAPNRGTVLSALAACAGAGALETGKWIHAFVERKRLFRWWDEFLGTALLDMYAKCGAVE 226
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYVGVLSAC 138
A V K+ ++ TW AMI GLA++ D F T+ PDEVT+VGVL AC
Sbjct: 227 LALDVFTKLRSRNTCTWNAMINGLAMNGYSAKALDMFRKMELDRTVVPDEVTFVGVLLAC 286
Query: 139 THNG 142
+H G
Sbjct: 287 SHGG 290
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 37/116 (31%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D +S+ ++ + G V AR+ F ++P V WT+M+ G R
Sbjct: 70 MSHRDTVSFNSMIHAHAMSGDVVSARRLFERVPSPTPVTWTSMVAGLCRA---------- 119
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
GDV A+R+ +M +D +W AM+ GLA
Sbjct: 120 ---------------------------GDVAAARRLFEEMPVRDLVSWNAMMSGLA 148
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 85/193 (44%), Gaps = 51/193 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+S T +VSGY V AR F+ M ER+ V W A+I GY + EA+ LF
Sbjct: 314 MPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF 373
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
++ +I P +T +L A
Sbjct: 374 LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLI 433
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEV 129
MY KCG VE + V +ML +D +W AMIVG A + + F + RPD V
Sbjct: 434 DMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHV 493
Query: 130 TYVGVLSACTHNG 142
T +GVLSAC+H G
Sbjct: 494 TMIGVLSACSHAG 506
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 70/184 (38%), Gaps = 45/184 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++ SW ++ G +D A F MPERD W AM+ G+ + +RF EAL
Sbjct: 80 MQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFV 139
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + + +E++ L+A MY KC
Sbjct: 140 VDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKC 199
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
V AQR M ++ +W ++I + P I PDE+T V
Sbjct: 200 RVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVA 259
Query: 136 SACT 139
SAC
Sbjct: 260 SACA 263
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ D+ ++ Y+ G V+ R F +M ERD V W AMI GY + EAL +F
Sbjct: 422 EDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFR 481
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVG 114
EM S RPD T++ +L+A + G VE+ + + M KD +T ++G
Sbjct: 482 EMLVSGERPDHVTMIGVLSACSH--AGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLG 539
Query: 115 LA--------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
A + P + PD V + +L+AC +GN T
Sbjct: 540 RAGCLDEANNLIQTMP-MEPDAVVWGSLLAACKVHGNITL 578
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 43/186 (23%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y V A++ F M R+ V W ++I Y + +AL +F M
Sbjct: 185 DVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMM 244
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
I PDE T+ + +A MY KC V
Sbjct: 245 NCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRV 304
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
+A+ V +M +D + T+M+ G A + R + V++ +++ T NG
Sbjct: 305 NEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNG 364
Query: 143 -NETFV 147
NE V
Sbjct: 365 ENEEAV 370
Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ +V Y +V+ AR F +MP RD V T+M+ GY + + + A +F M
Sbjct: 287 DLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMM 346
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
N+ I Y + G+ E+A R+ +L K + W
Sbjct: 347 ERNVVSWNALIAG------YTQNGENEEAVRLF--LLLKRESIW---------------- 382
Query: 125 RPDEVTYVGVLSACTH 140
P T+ +L+AC +
Sbjct: 383 -PTHYTFGNLLNACAN 397
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV +W +++GY G ++ A + F MP R+ WTAMI GY + ++ +AL++F
Sbjct: 143 MTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMF 202
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M + + +RP+E T+ +L A MY +
Sbjct: 203 LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYAR 262
Query: 87 CGDVEKAQRVLRKML-RKDKFTWTAMIVGLAISDP--------FPTIR----PDEVTYVG 133
CG ++KA V ++ R++ +W +MI+GLA+ + +R PD+VT+VG
Sbjct: 263 CGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322
Query: 134 VLSACTHNG 142
VL ACTH G
Sbjct: 323 VLLACTHGG 331
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 50/151 (33%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + T +V Y G + +AR+ F +M RD W +MI GY R
Sbjct: 116 DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYAR--------------- 160
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT- 123
CGD+E A + R M ++ +WTAMI G A + +
Sbjct: 161 ----------------------CGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKA 198
Query: 124 ------------IRPDEVTYVGVLSACTHNG 142
+RP+EVT VL AC + G
Sbjct: 199 LSMFLMMEEETEMRPNEVTLASVLPACANLG 229
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 45/189 (23%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T +++GY +RG ++ A++ F ++P +D V W A+I GY +EAL LF E
Sbjct: 166 HRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKE 225
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N++PDE T+V +++A +Y KCG+
Sbjct: 226 MMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGE 285
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
VE A + + + KD +W MI G + + P++VT + +L A
Sbjct: 286 VETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPA 345
Query: 138 CTHNGNETF 146
C G F
Sbjct: 346 CAQLGAIDF 354
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 73/189 (38%), Gaps = 78/189 (41%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ NKDVISW MI GY +N ++EAL LF
Sbjct: 296 LSNKDVISW-------------------------------NTMIGGYTHLNLYKEALLLF 324
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
EM S P++ T++ IL A MY
Sbjct: 325 QEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYA 384
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVG 133
KCGD+E A +V M + AMI G A+ D F +R PD++T+VG
Sbjct: 385 KCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVG 444
Query: 134 VLSACTHNG 142
+LSAC+H+G
Sbjct: 445 LLSACSHSG 453
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F M R AMI G+ R A +F M+ + I
Sbjct: 377 TSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ +R+ R M + K T + MI L F
Sbjct: 437 PDDITFVGLLSACSH--SGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEA 494
Query: 123 -------TIRPDEVTYVGVLSACTHNGN 143
T+ PD V + +L AC +GN
Sbjct: 495 EEMINTMTMEPDGVIWCSLLKACKMHGN 522
>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
Length = 686
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 27/154 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +++GY G +D AR F MP++D V W AM+ Y + E L LF
Sbjct: 309 MPCRNVASWNTMLTGYAQAGMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLF 368
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
EM MY KCG++E+A +M +D +W MI G A
Sbjct: 369 KEMG---------------RCAMYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGF 413
Query: 119 -----DPFPTIR-----PDEVTYVGVLSACTHNG 142
+ F T+R PD++T VGVL+AC+H+G
Sbjct: 414 GKEALEVFDTMRKTSTKPDDITLVGVLAACSHSG 447
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD +S+ ++S + N G V +AR YF PE+D V W M+ Y+R R +EA LF
Sbjct: 123 MPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLF 182
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
S D + ++ Y+ +C +E+AQ++ +M ++D +W M+ G A
Sbjct: 183 ----DSRTEWDAISWNALMAGYV--QCSQIEEAQKMFNRMPQRDVVSWNTMVSGHARRGD 236
Query: 121 FPTIR--------PDEVTYVGVLSACTHNG 142
R D T+ V+S NG
Sbjct: 237 MAEARRLFDVAPIRDVFTWTAVVSGYAQNG 266
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +VSG+ RG + AR+ F P RD WTA++ GY + EA +F
Sbjct: 216 MPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N + ++ AY+ + +E+A+ + M ++ +W M+ G A +
Sbjct: 276 DAMPEKNA----VSWNAMMAAYVQRRM--MEEAKELFDAMPCRNVASWNTMLTGYAQAGM 329
Query: 121 FPTIRP--------DEVTYVGVLSACTHNG 142
R D V++ +L+A + G
Sbjct: 330 LDEARAIFDMMPQKDAVSWAAMLAAYSQGG 359
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 1 MKNKDVISWTDIVSGYINRG----------------------QVDIARQYFAQMPERDYV 38
M KD +SW +++ Y G ++ A F +M ERD V
Sbjct: 340 MPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGRCAMYFKCGNMEEAHSAFEEMEERDIV 399
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
W MI GY R +EAL +F M+ ++ +PD+ T+V +L A + G VEK
Sbjct: 400 SWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSH--SGLVEKGISYFY 457
Query: 99 KMLR 102
M R
Sbjct: 458 SMHR 461
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ +VI ++ ++ G+V A + FA M R + AM+ GY R AL+ F
Sbjct: 32 DAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFF-- 89
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------ 116
S RPD F+ +L A + A+ + +M KD ++ MI A
Sbjct: 90 --RSIPRPDSFSYNTLLHALGVSSS--LADARALFDEMPVKDSVSYNVMISSHANHGLVS 145
Query: 117 ISDPFPTIRP--DEVTYVGVLSACTHNG 142
++ + + P D V++ G+L+A NG
Sbjct: 146 LARHYFDLAPEKDAVSWNGMLAAYIRNG 173
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++S Y G++ +R+ F MP RD++ W A I Y + EA++LF M+ + + P+
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPN 319
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T+ +L+A MY KCG +E AQRV
Sbjct: 320 KVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFN 379
Query: 99 KMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M RK+ +W AMI LA +SD + RP+++T+V +LSAC H G
Sbjct: 380 DMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
+V+ Y G+ +AR+ F ++ E+D V W +++ GY ++ REA+ +F + + S P
Sbjct: 158 MVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEP 217
Query: 71 DEFTIVRILTA---------------------------------YMYCKCGDVEKAQRVL 97
DE ++V +L A MY KCG++ ++R+
Sbjct: 218 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIF 277
Query: 98 RKMLRKDKFTWTAMIVGLA---ISDP----FPTIR-----PDEVTYVGVLSACTHNG 142
M +D TW A I A ++D F +++ P++VT VLSAC G
Sbjct: 278 DGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIG 334
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTA---------------------------------YM 83
L L+ +M+T NI P+ FT + A M
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTM 161
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTIR------PDEVT 130
Y +CG+ A++V ++ KD +W +++ G A + F +R PDE++
Sbjct: 162 YFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMS 221
Query: 131 YVGVLSACTHNGN 143
V VL AC G+
Sbjct: 222 LVSVLGACGELGD 234
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ ++I+S Y G +D A + F ++ E+D V WT M+ G + + +AL LF EM
Sbjct: 255 DQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREML 314
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+RPD FTI ++++ MY KCG+
Sbjct: 315 LENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETA 374
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACT 139
A V ++ML ++ +W +MI+G A + ++PD +T+VGVLSAC
Sbjct: 375 DAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACM 434
Query: 140 HNG 142
H G
Sbjct: 435 HAG 437
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ V W + + Y G +D AR F +M ++ V W +MI GYL+ + LF EM
Sbjct: 188 ESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEM 247
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP--- 120
Q+S + PD+ TI IL+AY +CG +++A + R++ KDK WT M+VG A +
Sbjct: 248 QSSGLMPDQVTISNILSAYF--QCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEED 305
Query: 121 ---------FPTIRPDEVTYVGVLSACT 139
+RPD T V+S+C
Sbjct: 306 ALLLFREMLLENVRPDNFTISSVVSSCA 333
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 71/182 (39%), Gaps = 45/182 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW ++S Y G V+ R F QM D V + +I G+ +AL F
Sbjct: 84 MSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFF 143
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
MQ ++T V +L A MY KC
Sbjct: 144 VRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKC 203
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISDPFPTIR-----------PDEVTYVGVL 135
G +++A+ + +M+ K+ +W +MI G L P + PD+VT +L
Sbjct: 204 GALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNIL 263
Query: 136 SA 137
SA
Sbjct: 264 SA 265
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D++ + +V Y G+ A F +M R+ + W +MI GY + + EAL L+ E
Sbjct: 354 DHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEE 413
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94
M N++PD T V +L+A M+ G VE+ Q
Sbjct: 414 MLHENLKPDNITFVGVLSACMH--AGLVERGQ 443
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLR 98
+T ++ +R N +A L M +P D F R+L ++Y K G++ A+ +
Sbjct: 25 YTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLL--HLYAKSGNLSDARDLFD 82
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPTIRP--------DEVTYVGVLSACTHNG 142
KM R+D F+W AM+ + S +R D V+Y V++ + NG
Sbjct: 83 KMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNG 134
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +++GY G + AR +F +MP+RD + W A+I GY + EAL LF
Sbjct: 242 MPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLF 301
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM+ R + T L+ MYCKC
Sbjct: 302 VEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKC 361
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVL 135
G+++ A V + K+ +W MI G A S I PD+VT VGVL
Sbjct: 362 GNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVL 421
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 422 SACSHTG 428
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV +WT +VSGY+ G +D AR+ F MPE++ V W A+I GY++ R +A LF M
Sbjct: 183 RDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAM 242
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
N+ I Y + GD+ +A+ +M ++D +W A+I G A S
Sbjct: 243 PCQNVSSWNTMITG------YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQS 291
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ISW ++ GY+ R ++ AR F +MPERD V W MI GY + EA LF E
Sbjct: 122 ELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE-- 179
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
S +R D FT +++ Y+ + G +++A+RV M K+ +W A+I G
Sbjct: 180 -SPVR-DVFTWTAMVSGYV--QNGMLDEARRVFDGMPEKNSVSWNAIIAG 225
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SGY G++ A++ F + P RD WTAM+ GY++ EA +F
Sbjct: 149 MPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF 208
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N + I+ Y+ CK +++A+ + M ++ +W MI G A +
Sbjct: 209 DGMPEKN----SVSWNAIIAGYVQCK--RMDQARELFEAMPCQNVSSWNTMITGYAQNGD 262
Query: 121 FPTIRP--------DEVTYVGVLSACTHNG 142
R D +++ +++ +G
Sbjct: 263 IAQARNFFDRMPQRDSISWAAIIAGYAQSG 292
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 25/139 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++SGY G V A++ F +MP ++ + W M+ Y++ R +A LF
Sbjct: 56 MPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF 115
Query: 61 PE-----------MQTSNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
M ++ + R + M Y + G++ +AQR
Sbjct: 116 ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQR 175
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ + +D FTWTAM+ G
Sbjct: 176 LFEESPVRDVFTWTAMVSG 194
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
AR F QMPERD V W AM+ GY + +EA +F EM N + +L AY+
Sbjct: 49 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKN----SISWNGMLAAYV- 103
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----------AISDPFPTIRPDEVTYVGV 134
+ G +E A+R+ + +W M+ G I D P DEV++ +
Sbjct: 104 -QNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP--ERDEVSWNTM 160
Query: 135 LSACTHNG 142
+S NG
Sbjct: 161 ISGYAQNG 168
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 22/145 (15%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G +D A F + E++ V W MI GY R +EAL LF M+ + I PD+ T+
Sbjct: 358 YCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTM 417
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISD----------- 119
V +L+A + G V+K M + T +T MI L +
Sbjct: 418 VGVLSACSH--TGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 475
Query: 120 -PFPTIRPDEVTYVGVLSACTHNGN 143
PF PD T+ +L A +GN
Sbjct: 476 MPF---EPDAATWGALLGASRIHGN 497
>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Brachypodium distachyon]
Length = 508
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++KD++ W +V+ Y G+++ AR + PE+D V W +I GY +EAL +
Sbjct: 190 QHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLD 249
Query: 62 EMQTSNIRPDEFTIVRILT---------------------------------AYMYCKCG 88
EM+ + PDE TIV +L+ MY KCG
Sbjct: 250 EMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCG 309
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAI------SDPF------PTIRPDEVTYVGVLS 136
DV+ A V +M +D +TW ++I GLA S F + P+E++++ VL
Sbjct: 310 DVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLG 369
Query: 137 ACTHNG 142
AC+H G
Sbjct: 370 ACSHAG 375
Score = 43.5 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS Y G V A + F++M ERD W ++I G + +++ F +M + P+
Sbjct: 301 LVSMYAKCGDVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPN 360
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
E + + +L A + G VE QR M+ +
Sbjct: 361 EISFLCVLGACSH--AGLVEDGQRYFSLMINR 390
Score = 37.0 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +D AR+ F + D + M+ GY A L+ ++ + ++PD FT +L
Sbjct: 45 GGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLL 104
Query: 80 TAY--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
A + C + V++ KD F A+I
Sbjct: 105 RACAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALI 139
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++SW+ ++ + G++D+AR+ F MPERD V WT M+ Y + R E L LF EM+
Sbjct: 174 DIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMR 233
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + PDE T++ +++A MY KCG +E
Sbjct: 234 LAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLE 293
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSACT 139
+A +V + RK TW AM++ A D F + PD VT + +L A
Sbjct: 294 EAWQVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYA 353
Query: 140 HNG 142
H G
Sbjct: 354 HKG 356
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 12/72 (16%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTY 131
+ K G+++ A++V M +D +WT M+ + + D F +R PDEVT
Sbjct: 185 HAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTV 244
Query: 132 VGVLSACTHNGN 143
+ V+SAC G+
Sbjct: 245 LSVISACAELGD 256
>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 631
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 270 MDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 329
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 330 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 389
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CGDV +A+ + KM + TWT MI G A + D ++ D+ ++
Sbjct: 390 CGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 449
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 450 LAACAHGG 457
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 76/196 (38%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A +F MPER+ V W ++ G+ R+ A +F
Sbjct: 177 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 236
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M P + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 237 DRM------PSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 290
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 291 LDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 350
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 351 ACAQLGS----VEYCN 362
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A F +M R + WT MI G+ R+AL ++ M ++ D+ + L
Sbjct: 391 GDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAAL 450
Query: 80 TAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLAIS--------DPFPTI 124
A + G +++ + +M+ R + + ++G A + + P +
Sbjct: 451 AACAH--GGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMP-L 507
Query: 125 RPDEVTYVGVLSACTHNGNETFV 147
P V +V +L +C +GN +
Sbjct: 508 EPSVVIWVTLLCSCVAHGNAELI 530
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++S Y G++ +R+ F MP RD++ W A I Y + EA++LF M+ + + P+
Sbjct: 260 LISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPN 319
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T+ +L+A MY KCG +E AQRV
Sbjct: 320 KVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFN 379
Query: 99 KMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M RK+ +W AMI LA +SD + RP+++T+V +LSAC H G
Sbjct: 380 DMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
+V+ Y G+ +AR+ F ++ E+D V W +++ GY ++ REA+ +F + + S P
Sbjct: 158 MVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEP 217
Query: 71 DEFTIVRILTA---------------------------------YMYCKCGDVEKAQRVL 97
DE ++V +L A MY KCG++ ++R+
Sbjct: 218 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIF 277
Query: 98 RKMLRKDKFTWTAMIVGLA---ISDP----FPTIR-----PDEVTYVGVLSACTHNG 142
M +D TW A I A ++D F +++ P++VT VLSAC G
Sbjct: 278 DGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIG 334
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 46/133 (34%)
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTA---------------------------------YM 83
L L+ +M+T NI P+ FT + A M
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTM 161
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTIR------PDEVT 130
Y +CG+ A++V ++ KD +W +++ G A + F +R PDE++
Sbjct: 162 YFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMS 221
Query: 131 YVGVLSACTHNGN 143
V VL AC G+
Sbjct: 222 LVSVLGACGELGD 234
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V+++ +VSG + G VD A + F MP D V WTA+IDG+++ R EA+ F
Sbjct: 133 MPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCF 192
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M ++ PD T++ +++A MY +C
Sbjct: 193 RAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARC 252
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G V+ A +V + ++ +W +MIVGLA + + F +R PD VT GVL
Sbjct: 253 GQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVL 312
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 313 TACSHAG 319
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y GQV +A Q F + +R V W +MI G EA+ LF EM+ +PD
Sbjct: 245 LIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPD 304
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA-------- 116
T+ +LTA + G E R M R + + ++G A
Sbjct: 305 AVTLTGVLTACSH--AGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMH 362
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P +RP+EV +L+ C +G+
Sbjct: 363 VVETMP-MRPNEVVLGALLAGCRMHGD 388
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 84/189 (44%), Gaps = 55/189 (29%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
DV+SWT +V G + G D AR F MPER+ V W AM+ GY++ RF +AL +F EM
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 64 ----------------------------------QTSNIRPDEFTIVRILTAY--MYCKC 87
+ S I+ DE ++ TA MYCKC
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDE----KLATAVVDMYCKC 279
Query: 88 GDVEKAQRVLRK--MLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVG 133
G VE+A RV + K TW MI G A+ D + PD+VT V
Sbjct: 280 GCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVN 339
Query: 134 VLSACTHNG 142
VL+AC H G
Sbjct: 340 VLTACAHAG 348
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 84/189 (44%), Gaps = 55/189 (29%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
DV+SWT +V G + G D AR F MPER+ V W AM+ GY++ RF +AL +F EM
Sbjct: 164 DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVFDEMR 223
Query: 64 ----------------------------------QTSNIRPDEFTIVRILTAY--MYCKC 87
+ S I+ DE ++ TA MYCKC
Sbjct: 224 ARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDE----KLATAVVDMYCKC 279
Query: 88 GDVEKAQRVLRK--MLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVG 133
G VE+A RV + K TW MI G A+ D + PD+VT V
Sbjct: 280 GCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVN 339
Query: 134 VLSACTHNG 142
VL+AC H G
Sbjct: 340 VLTACAHAG 348
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +V GY G +++AR F +MP ++ V WT ++ G+ REA++LF
Sbjct: 244 MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLF 303
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + ++ D T++ IL A MY KC
Sbjct: 304 DQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKC 363
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G + A V + KD +W AM+ GLA+ + F ++ P++VT +GVL
Sbjct: 364 GRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVL 423
Query: 136 SACTHNG 142
ACTH G
Sbjct: 424 CACTHAG 430
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW ++SG G + AR+ F +MPE+D + W M+DGY++V + +A LF EM
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------- 116
P+ + YCK GD+E A+ + KM K+ +WT ++ G A
Sbjct: 245 ------PERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLARE 298
Query: 117 ---ISDPF--PTIRPDEVTYVGVLSACTHNG 142
+ D ++ D T + +L+AC +G
Sbjct: 299 AISLFDQMEKACLKLDNGTVMSILAACAESG 329
>gi|297828247|ref|XP_002882006.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
gi|297327845|gb|EFH58265.1| hypothetical protein ARALYDRAFT_903976 [Arabidopsis lyrata subsp.
lyrata]
Length = 412
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 90/219 (41%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW ++ GY+ G+++ A+ F MP RD V MIDGY ++ +A TLF
Sbjct: 46 MPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLF 105
Query: 61 PEM--------------------------------QTSNIRPDEFTIVRILTAY------ 82
+M + S++ PDE T+V IL+A
Sbjct: 106 DQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRL 165
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A V + K W AMI GL
Sbjct: 166 SKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGL 225
Query: 116 AISDPFP------------TIRPDEVTYVGVLSACTHNG 142
A+ +I PD++T+VGVL+AC+H+G
Sbjct: 226 AVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSG 264
>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
Length = 589
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W ++ GY G++D AR F +MPER+ + W+ +IDGY+R EAL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 61 PEMQTSNIRPDEFTIV---------------RILTAY------------------MYCKC 87
M I+PD V R L +Y MY KC
Sbjct: 299 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRP--DEVTYVGVL 135
G ++ A+ + M +K TW MIVGL + + T R D+++ + VL
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 418
Query: 136 SACTHNG 142
++CTH G
Sbjct: 419 TSCTHAG 425
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 1 MKNKDVISWTDIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ +D SW ++ GY G VD AR+ F QMP+RD V W +MIDGY R R EA L
Sbjct: 207 MRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVL 266
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
F EM P+ I + Y + G+ +A ++MLR
Sbjct: 267 FEEM------PERNVISWSIVIDGYVRFGEPNEALEFFQRMLR 303
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V+ Y G +D + F M RD V W AM+ GY + EAL LF EM+
Sbjct: 395 DVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMR 454
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ N PD TIV +L MYCKCGD++
Sbjct: 455 SDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLD 514
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSACT 139
AQR +M D +W+A+IVG L F ++P+ V ++ VLS+C+
Sbjct: 515 TAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCS 574
Query: 140 HNG 142
HNG
Sbjct: 575 HNG 577
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y+ G++DIA + F + ++D VLWTAMI G ++ +AL +F +M ++
Sbjct: 299 TSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVK 358
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P T+ ++TA MY KCG ++++ V
Sbjct: 359 PSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIV 418
Query: 97 LRKMLRKDKFTWTAMIVGLAISD-------PFPTIR-----PDEVTYVGVLSACTHNG 142
M R+D +W AM+ G A + F +R PD +T V +L C G
Sbjct: 419 FDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTG 476
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 30/137 (21%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +++ Y G D+AR+ F MPER+ V WT +I Y R R EA +LF EM+ I+
Sbjct: 100 SSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQ 159
Query: 70 PDEFTIVR------------------ILTAYM------------YCKCGDVEKAQRVLRK 99
P T++ IL +M Y KCG++E ++++
Sbjct: 160 PSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDY 219
Query: 100 MLRKDKFTWTAMIVGLA 116
M +D +W ++I A
Sbjct: 220 MDHRDLVSWNSLISAYA 236
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G +D A++ F QMP D V W+A+I GY + AL + + S ++
Sbjct: 501 TSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMK 560
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
P+ + +L++ + G VE+ + M +
Sbjct: 561 PNHVIFLSVLSSCSH--NGLVEQGLNIYESMTK 591
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 62/173 (35%), Gaps = 45/173 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR--PDEF 73
Y G ++ +R+ F M RD V W ++I Y ++ E L L M+ P F
Sbjct: 204 YGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTF 263
Query: 74 TIV------------------RILTA-------------YMYCKCGDVEKAQRVLRKMLR 102
V +IL A +Y K G ++ A R+ +
Sbjct: 264 GSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSD 323
Query: 103 KDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNGN 143
KD WTAMI GL + ++P T V++AC G+
Sbjct: 324 KDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGS 376
>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
Length = 616
Score = 92.4 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W ++ GY G++D AR F +MPER+ + W+ +IDGY+R EAL F
Sbjct: 239 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 298
Query: 61 PEMQTSNIRPDEFTIV---------------RILTAY------------------MYCKC 87
M I+PD V R L +Y MY KC
Sbjct: 299 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 358
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRP--DEVTYVGVL 135
G ++ A+ + M +K TW MIVGL + + T R D+++ + VL
Sbjct: 359 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 418
Query: 136 SACTHNG 142
++CTH G
Sbjct: 419 TSCTHAG 425
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 1 MKNKDVISWTDIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ +D SW ++ GY G VD AR+ F QMP+RD V W +MIDGY R R EA L
Sbjct: 207 MRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVL 266
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
F EM P+ I + Y + G+ +A ++MLR
Sbjct: 267 FEEM------PERNVISWSIVIDGYVRFGEPNEALEFFQRMLR 303
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 47/186 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +++++ +++ Y + AR+ F Q+P++D + W++MI GY + N F +AL +F
Sbjct: 249 MKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIF 308
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ + ++PD I ++++ MY KC
Sbjct: 309 RQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKC 368
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGV 134
G ++A +V ++M KD +W ++I+GLA ++ F RP+ VT++GV
Sbjct: 369 GSAKEALQVFKEMKEKDTLSWNSIIIGLA-NNGFEKESLNLFQAMLTEGFRPNGVTFLGV 427
Query: 135 LSACTH 140
L AC +
Sbjct: 428 LIACAN 433
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 76/214 (35%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y G + AR F +M +D V W ++I GY + NRF++ L LF MQ
Sbjct: 121 DIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQ 180
Query: 65 TSNIRPDEFTIVRILTA-----------YM------YC----------------KCGDVE 91
++ D+ T++++++A YM YC + G ++
Sbjct: 181 NEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQ 240
Query: 92 KAQRVL---------------------------RKML----RKDKFTWTAMIVGLAISDP 120
A++V RK+ +KD +W++MI G + ++
Sbjct: 241 SAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANH 300
Query: 121 F------------PTIRPDEVTYVGVLSACTHNG 142
F ++PD + V+S+C H G
Sbjct: 301 FSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLG 334
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 45/164 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
A + F Q+ LW +I G + + +A+ + + Q + PD T IL A
Sbjct: 40 AHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACAR 99
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
++Y CG++ A+ V +M+ KD +W ++
Sbjct: 100 INALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSL 159
Query: 112 IVGLAISDPFPTI------------RPDEVTYVGVLSACTHNGN 143
I G + + F I + D+VT + V+SACT G+
Sbjct: 160 ICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGD 203
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++++ ++ Y+ V AR+ F +MPE+D + WT+MI G ++ RE+L LF
Sbjct: 237 LYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLF 296
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+MQ S PD + +L+A MY KC
Sbjct: 297 SQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKC 356
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTI-----RPDEVTYVGVL 135
G ++ AQR+ M K+ TW A I GLAI+ F + RP+EVT++ V
Sbjct: 357 GCIDMAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVF 416
Query: 136 SACTHNG 142
+AC HNG
Sbjct: 417 TACCHNG 423
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 66/163 (40%), Gaps = 48/163 (29%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
A + F M RD V WT +I GY++ F EA++LF M N+ P+ T V IL A
Sbjct: 163 AGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRM---NVEPNVGTFVSILGACGK 219
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY KC V A+++ +M KD +WT+M
Sbjct: 220 LGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSM 279
Query: 112 IVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
I GL D F ++ PD V VLSAC G
Sbjct: 280 IGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLG 322
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEM 63
DV T +V Y G +D+A++ F MP ++ W A I G L +N + +EAL F ++
Sbjct: 342 DVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGG-LAINGYGKEALKQFEDL 400
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
S RP+E T + + TA C G V++ ++ +M
Sbjct: 401 VESGTRPNEVTFLAVFTA--CCHNGLVDEGRKYFNEM 435
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP---------TIRPDEVTYV 132
++Y CGD A +V ML +D +WT +I G + F + P+ T+V
Sbjct: 152 HVYSICGDNVGAGKVFEDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMNVEPNVGTFV 211
Query: 133 GVLSACTHNG 142
+L AC G
Sbjct: 212 SILGACGKLG 221
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 46/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D SW ++ Y+ G + +A++ F +M ERD V W+ +I GY++V F EAL F +
Sbjct: 341 DRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFHK 400
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M S ++P+E+T+V L A MY KCG+
Sbjct: 401 MLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAKCGE 460
Query: 90 VEKAQRVLRKMLRKDK-FTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
++ A V + K K + W AMI G A+ + P++VT++ +L+
Sbjct: 461 IDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVSPNKVTFIALLN 520
Query: 137 ACTHN 141
AC+H
Sbjct: 521 ACSHG 525
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 48/189 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTL 59
M K+VI T ++SGY+NRG V+ A + F + E+D V++ AMI+GY + V +AL +
Sbjct: 208 MMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEV 267
Query: 60 FPEMQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+ EMQ RP+ T ++ A MY K
Sbjct: 268 YVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSK 327
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVG 133
CG +E A+R +M K+ F+W++MI G + P I P+ VT++G
Sbjct: 328 CGRIEDARRAFEQMPEKNVFSWSSMIDGYG-KNGRPDEALQLFHKMQDCCIEPNYVTFLG 386
Query: 134 VLSACTHNG 142
LSAC H G
Sbjct: 387 ALSACGHAG 395
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V + + ++ Y G+++ AR+ F QMPE++ W++MIDGY + R EAL LF +MQ
Sbjct: 314 NVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQ 373
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLAI 117
I P+ T + L+A + G V K + + M R+ + + ++G A
Sbjct: 374 DCCIEPNYVTFLGALSACGH--AGLVSKGREIFESMEREYSLKPGMEHYACMVDLLGRAG 431
Query: 118 SDPFP-------TIRPDEVTYVGVLSACTHNGN 143
S +P + +LSAC +GN
Sbjct: 432 SLNLAWEFVMGMPEKPSSDVWAALLSACNLHGN 464
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y+ G + ARQ F ++P+R + +I GYL++ ++++ L + RPD FT
Sbjct: 87 YLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNLVRRLVLEGQRPDGFTY 146
Query: 76 VRILTAY-------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
IL A + C G V Q +L+ + D +TA++
Sbjct: 147 SMILKASTSGDNVTLSCNLGSVVHGQ-ILKSEVEPDDVLYTALV 189
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
D V+ N G V + Q E D VL+TA++D Y++ R A +F M N+
Sbjct: 157 DNVTLSCNLGSV-VHGQILKSEVEPDDVLYTALVDSYVKSGRVGYARKVFDMMMEKNV-- 213
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------- 123
+++ YM G VE A+ + + + KD + AMI G + S
Sbjct: 214 --ICSTSMISGYM--NRGSVEDAEEIFERTVEKDVVVFNAMIEGYSKSVQTAEKALEVYV 269
Query: 124 ------IRPDEVTYVGVLSACT 139
RP+ T+ V+ AC+
Sbjct: 270 EMQRYGFRPNLSTFASVIGACS 291
>gi|77548396|gb|ABA91193.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125533163|gb|EAY79711.1| hypothetical protein OsI_34859 [Oryza sativa Indica Group]
gi|125575980|gb|EAZ17202.1| hypothetical protein OsJ_32710 [Oryza sativa Japonica Group]
Length = 537
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W ++ ++ G +D A + F +MP+RD V ++I GY ++ ++ +AL +F
Sbjct: 276 MPERNLSWWNAEIARNVSIGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIF 335
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + I P E T+V IL A MY KC
Sbjct: 336 QEMKENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKC 395
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSAC 138
G ++ A++V +M +D W AMI+G ++ + F + I P+ VT++GVL+AC
Sbjct: 396 GRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTAC 455
Query: 139 THNG 142
+H G
Sbjct: 456 SHGG 459
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +VS Y G++ AR+ F +MP+++ V W A++ + + A + M
Sbjct: 217 KDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAM 276
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP- 122
N+ I R ++ G +++A R+ R+M ++D + ++I G +
Sbjct: 277 PERNLSWWNAEIARNVS------IGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTK 330
Query: 123 -----------TIRPDEVTYVGVLSACTHNG 142
I P E+T V +L AC +G
Sbjct: 331 ALEIFQEMKENAIEPTELTLVLILGACAKDG 361
>gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 735
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 89/199 (44%), Gaps = 52/199 (26%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFP 61
++ I+WT ++SGY++ GQV A F MP+ +D + WT MI GY++ EA+ LF
Sbjct: 393 RNKIAWTCMISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFA 452
Query: 62 EMQTSNIRPDEFTIVRILTAY-----------------------------------MYCK 86
EM P T + A MY K
Sbjct: 453 EMMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAK 512
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
CG++E A R+ M +DK +W +MI+GL+ + + T + PD VT++GV
Sbjct: 513 CGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETMLEFGVYPDAVTFLGV 572
Query: 135 LSACTHNGNETFVINSCNL 153
L+AC H G FV C L
Sbjct: 573 LTACAHAG---FVDKGCEL 588
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V G I G ++ AR+ F P+++ V W AMI+GY+ R +A LF
Sbjct: 160 MPERNVVSWNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLF 219
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
+++ N+ T +++ Y C+ GDV +A R+ + M K+ +WTAMI G A +
Sbjct: 220 DQIECRNV----ITWTSMISGY--CRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGF 273
Query: 120 ------------PFPTIRPDEVTYVGVLSACTHNG 142
+P+E T+V ++ AC G
Sbjct: 274 YREALLLFLDMMTLSDAKPNEETFVSLVYACAGMG 308
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++++ ++S Y+ G A+++F MPER+ V WTAM+ GY + +A +F
Sbjct: 98 MPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVF 157
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM N+ +V ++ + GD+E+A++V K+ +W AMI G
Sbjct: 158 DEMPERNVVSWNSMVVGLI------RNGDLEEARKVFDDTPDKNVVSWNAMIEG 205
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 6/110 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ WT +++ Y G V+ AR F MP R+ V + AM+ YL+ R+A F +M
Sbjct: 72 VVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDMPE 131
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
N+ + +L+ Y G ++ A++V +M ++ +W +M+VGL
Sbjct: 132 RNV----VSWTAMLSG--YAGLGWIDDARKVFDEMPERNVVSWNSMVVGL 175
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MKN D S+ +++GY+ GQ+ A++ F +P R+ + WT MI GYL + +A LF
Sbjct: 359 MKNCDDQSFNSMINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLF 418
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+M S D+ +I L Y Y + + +A + +M+ +
Sbjct: 419 DDMPDS----DKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQ 457
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++S Y G+++ A + F+ M RD + W +MI G R EAL ++ M
Sbjct: 499 DVYLENSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETML 558
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+ PD T + +LTA + G V+K + ML
Sbjct: 559 EFGVYPDAVTFLGVLTACAH--AGFVDKGCELFSVML 593
>gi|297727903|ref|NP_001176315.1| Os11g0114800 [Oryza sativa Japonica Group]
gi|255679719|dbj|BAH95043.1| Os11g0114800, partial [Oryza sativa Japonica Group]
Length = 483
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ W ++ ++ G +D A + F +MP+RD V ++I GY ++ ++ +AL +F
Sbjct: 222 MPERNLSWWNAEIARNVSIGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIF 281
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + I P E T+V IL A MY KC
Sbjct: 282 QEMKENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKC 341
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT--IRPDEVTYVGVLSAC 138
G ++ A++V +M +D W AMI+G ++ + F + I P+ VT++GVL+AC
Sbjct: 342 GRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELFDSMKIEPNPVTFLGVLTAC 401
Query: 139 THNG 142
+H G
Sbjct: 402 SHGG 405
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +VS Y G++ AR+ F +MP+++ V W A++ + + A + M
Sbjct: 163 KDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAM 222
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP- 122
N+ I R ++ G +++A R+ R+M ++D + ++I G +
Sbjct: 223 PERNLSWWNAEIARNVS------IGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTK 276
Query: 123 -----------TIRPDEVTYVGVLSACTHNG 142
I P E+T V +L AC +G
Sbjct: 277 ALEIFQEMKENAIEPTELTLVLILGACAKDG 307
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 81/184 (44%), Gaps = 46/184 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+ T +V Y G V+IAR F MPERD V W AMI Y + +EAL ++ M
Sbjct: 143 RDVVVCTGLVRCYGRNGCVEIARMVFDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYM 202
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ N+ D FT+V +L++ MY KCG +
Sbjct: 203 RNENVGVDGFTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSL 262
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+ A V M R D FTW +MIVG + +RP+ + ++G+L C
Sbjct: 263 DGALEVFNGMPR-DAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGC 321
Query: 139 THNG 142
+H G
Sbjct: 322 SHQG 325
>gi|116309337|emb|CAH66421.1| H0622F05.4 [Oryza sativa Indica Group]
gi|116309402|emb|CAH66479.1| OSIGBa0137L20.8 [Oryza sativa Indica Group]
Length = 545
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 20/159 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N +SWT IV+ Y+N G + AR+ F Q+P R+ V W AM+DGY++ A LF
Sbjct: 166 LTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM P +T ++ Y+ G++ A+ + K+ +D F W+ MI G A +
Sbjct: 226 DEMPERT--PAAYT--SLIGGYL--NAGNMGAARTLFDKLEDRDLFAWSTMISGCA-QNG 278
Query: 121 FP-------------TIRPDEVTYVGVLSACTHNGNETF 146
+P I PDE+ VG++SAC+ GN T
Sbjct: 279 YPGEALRIFNEFQKQEICPDELVIVGLMSACSQLGNITL 317
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++T ++ GY+N G + AR F ++ +RD W+ MI G + EAL +F
Sbjct: 228 MPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIF 287
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
E Q I PDE IV +++A M K
Sbjct: 288 NEFQKQEICPDELVIVGLMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAK 347
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG++E+A + M +D F++ +M+ G + I PD + V
Sbjct: 348 CGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVV 407
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 408 LTACSHAG 415
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 12 IVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+++G IN G ++ A F M RD + +M+ G+ +A+ LF +M
Sbjct: 337 VMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEG 396
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
I PD +LTA + G VE+ +R M
Sbjct: 397 ITPDNAAFTVVLTACSH--AGLVEEGKRYFDMM 427
>gi|115458312|ref|NP_001052756.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|32479728|emb|CAE01515.1| OJ991214_12.4 [Oryza sativa Japonica Group]
gi|113564327|dbj|BAF14670.1| Os04g0414800 [Oryza sativa Japonica Group]
gi|125590342|gb|EAZ30692.1| hypothetical protein OsJ_14749 [Oryza sativa Japonica Group]
Length = 545
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 81/159 (50%), Gaps = 20/159 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N +SWT IV+ Y+N G + AR+ F Q+P R+ V W AM+DGY++ A LF
Sbjct: 166 LTNPSEVSWTAIVTAYVNSGDILTARELFDQIPHRNVVHWNAMVDGYVKCGDLEGARKLF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM P +T ++ Y+ G++ A+ + K+ +D F W+ MI G A +
Sbjct: 226 DEMPERT--PAAYT--SLIGGYL--NAGNMGAARTLFDKLEDRDLFAWSTMISGCA-QNG 278
Query: 121 FP-------------TIRPDEVTYVGVLSACTHNGNETF 146
+P I PDE+ VG++SAC+ GN T
Sbjct: 279 YPGEALRIFNEFQKQEICPDELVIVGLMSACSQLGNITL 317
Score = 74.7 bits (182), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++T ++ GY+N G + AR F ++ +RD W+ MI G + EAL +F
Sbjct: 228 MPERTPAAYTSLIGGYLNAGNMGAARTLFDKLEDRDLFAWSTMISGCAQNGYPGEALRIF 287
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
E Q I PDE IV +++A M K
Sbjct: 288 NEFQKQEICPDELVIVGLMSACSQLGNITLARWIEGYIMIYPIDMNNVHVMAGLINMNAK 347
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG++E+A + M +D F++ +M+ G + I PD + V
Sbjct: 348 CGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEGITPDNAAFTVV 407
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 408 LTACSHAG 415
Score = 36.2 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 12 IVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+++G IN G ++ A F M RD + +M+ G+ +A+ LF +M
Sbjct: 337 VMAGLINMNAKCGNMERATLLFESMSVRDVFSYCSMMQGHCLHGSASKAVELFSQMLLEG 396
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
I PD +LTA + G VE+ +R M
Sbjct: 397 ITPDNAAFTVVLTACSH--AGLVEEGKRYFDMM 427
>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
Length = 567
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S+T +V G RG+V AR+ F MP+R+ V W AMI GY+ F EA LF
Sbjct: 137 MPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLF 196
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N+ ++T+ YCK GDVE A+R+ + KD +W MI G +
Sbjct: 197 EAMPEKNV----VACTAMITS--YCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGH 250
Query: 121 FPT------------IRPDEVTYVGVLSACT 139
++PD T + VL+AC+
Sbjct: 251 GEEAMRLHAVMFREGVKPDHATLIAVLTACS 281
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++ T +++ Y +G V+ AR+ F + +D + W MI GY+ EA+ L
Sbjct: 199 MPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLH 258
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M ++PD T++ +LTA MY KC
Sbjct: 259 AVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKC 318
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVL 135
G+V +++ V + KD +W +I A + + PD++T++ VL
Sbjct: 319 GNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVL 378
Query: 136 SACTHNG 142
SAC H G
Sbjct: 379 SACGHVG 385
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW I++G + G +D A YFA P+R+ W AM+ G LR+ R +A LF
Sbjct: 75 MPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRADDADRLF 134
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM N+ T+V L + G+V +A+ V M ++ +W AMI G
Sbjct: 135 GEMPKRNV-VSYTTMVDGLA-----RRGEVARAREVFDAMPDRNLVSWAAMISG 182
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 7 ISWTD-IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
IS+++ +++ Y G V + F + +D V W +I Y + ++++ + LF EM+
Sbjct: 305 ISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEM 364
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
+ + PD+ T + +L+A CG V K L+
Sbjct: 365 TGLIPDDITFLSVLSA-----CGHVGKVDASLK 392
Score = 43.1 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR--EALTLFPEMQTSNIRP 70
+S G V AR+ F MP RD V W A++ R R A LF E S
Sbjct: 22 ISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVV 81
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+I+ A+ GD++ A +++ TW AM+ GL
Sbjct: 82 SWNSIIAGCLAH-----GDLDAASAYFAGAPKRNVATWNAMLAGL 121
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 51/187 (27%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW +++ + G + AR+ F MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
I P+E T+ L+A MY KCG + A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAV 464
Query: 95 RVLRKMLRKDKFT----WTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLSAC 138
+ ++ DKF+ W AMI LAI D F +I+P+ +T++GVLSAC
Sbjct: 465 QFFNRV--NDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSAC 522
Query: 139 THNGNET 145
H G T
Sbjct: 523 CHAGTVT 529
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ ++W +++GY+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTHRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M + +++ ++ + + V + Q+ L ++ K+ F A +
Sbjct: 265 VQM-VGEVGANDYEVLLVDLMKACARYSAVTEGQQ-LHTVILKNGFDALAFV 314
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFP 61
+D + I++ G +D A+ +MP RD V +T ++ + R A+ +F
Sbjct: 74 RDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTAFARAGHAARAVAVFR 133
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS--- 118
M + N+ P+E T+ +TA + +CG MI G A+
Sbjct: 134 SMLSENVVPNEATLAGAITA--FARCGAPAT----------------VGMIHGFALQRAL 175
Query: 119 DPFPTIRPDEV-TYVGVLSACT 139
D F + + V Y GVL C+
Sbjct: 176 DGFVIVATNLVHAYAGVLELCS 197
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 46/187 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ +V+ W ++ GY+ G AR F +M +R V W MI GY + F++A+ +F
Sbjct: 197 RDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFR 256
Query: 62 EMQTS-NIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ +IRP+ T+V +L A MY KC
Sbjct: 257 EMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKC 316
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G +EKA V ++ R++ TW+AMI G AI D F +RP +V Y+ +L
Sbjct: 317 GIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLL 376
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 377 TACSHAG 383
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G ++ A F ++P + + W+AMI+G+ + +A+ F +M+
Sbjct: 302 DDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR 361
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI------- 117
+ +RP + + +LTA + G VE+ +R +M+ D G +
Sbjct: 362 QAGVRPSDVAYINLLTACSH--AGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLG 419
Query: 118 ----SDPF---PTIRPDEVTYVGVLSACTHNGN 143
++ F I+PD+V + +L AC + N
Sbjct: 420 LLDEAEEFILNMPIKPDDVIWKALLGACRMHRN 452
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFPEMQTSN-IRPDEF 73
++ +D A + F QMP+R+ W +I G+ + + A+TLF EM + I P+ F
Sbjct: 63 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRF 122
Query: 74 TIVRILTAYMYCKCGDVEKAQRV----LRKMLRKDKFTWTAMI 112
T +L A K G +++ +++ L+ D+F + ++
Sbjct: 123 TFPSVLKA--CAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLV 163
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 51/187 (27%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW +++ + G + AR+ F MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
I P+E T+ L+A MY KCG + A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAV 464
Query: 95 RVLRKMLRKDKFT----WTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLSAC 138
+ ++ DKF+ W AMI LAI D F +I+P+ +T++GVLSAC
Sbjct: 465 QFFNRV--NDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSAC 522
Query: 139 THNGNET 145
H G T
Sbjct: 523 CHAGTVT 529
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ++W +++GY+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M + +++ ++ + + V + Q+ L ++ K+ F A +
Sbjct: 265 VQM-VGEVGANDYEVLLVDLMKACARYSAVTEGQQ-LHTVILKNGFDAHAFV 314
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFP 61
+D + +++ G +D A+ +MP RD V +T ++ + R A+ +F
Sbjct: 74 RDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAVFR 133
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS--- 118
M + N+ P+E T+ +TA + +CG MI G A+
Sbjct: 134 SMLSENVVPNEATLAGAITA--FARCGAPAT----------------VGMIHGFALQRAL 175
Query: 119 DPFPTIRPDEV-TYVGVLSACT 139
D F + + V Y GVL C+
Sbjct: 176 DGFVIVATNLVHAYAGVLELCS 197
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++WT +VSGY G + A + F +MPE++ V WTA+I GY R +AL LF
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELF 312
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M ++RPD+FT L A MY KC
Sbjct: 313 TKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKC 372
Query: 88 GDVEKAQRVLRKMLRK-DKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGV 134
G + ++V M K D W +I LA + D + +PD++T+V +
Sbjct: 373 GSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVI 432
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 433 LNACSHSG 440
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++SGY G + AR+ F +MPE+D V W M+ + + + EAL +
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
E + I+ + F+ +LT + Y KC
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G + A+++ +M +D WT M+ G A
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYA 269
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++WT +VSGY G + A + F +MPE++ V WTA+I GY R +AL LF
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELF 312
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M ++RPD+FT L A MY KC
Sbjct: 313 TKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKC 372
Query: 88 GDVEKAQRVLRKMLRK-DKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGV 134
G + ++V M K D W +I LA + D + +PD++T+V +
Sbjct: 373 GSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVI 432
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 433 LNACSHSG 440
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++SGY G + AR+ F +MPE+D V W M+ + + + EAL +
Sbjct: 121 MSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFY 180
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
E + I+ + F+ +LT + Y KC
Sbjct: 181 SEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKC 240
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G + A+++ +M +D WT M+ G A
Sbjct: 241 GLMGDARKLFDEMSARDVLAWTTMVSGYA 269
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +RPD+ T+ +L+A MY KCGD++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR------PDEVTYVGVLSAC 138
KA V RKM K+ +W A+I GLA + F +R PD++T++GVLSAC
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Query: 139 THNG 142
H G
Sbjct: 468 VHAG 471
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEF---------- 73
AR+ F +P RD V W AM+ Y RV E +F +M + + P+
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACR 265
Query: 74 -----------------------TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
++V MY KCG++ +A+RV ++ KD W A
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 111 MIVGLA------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
MI G A S +RPD++T GVLSAC+ G
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVG 369
>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
Length = 618
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 18/152 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +V+G G VD AR F MPER+ V W AMI GY R +R EA LF
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRIDEAHDLF 245
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M T +I I T ++ + D+E+AQ + KM R++ TWT M+ G S
Sbjct: 246 MKMPTRDIASWNIMI----TGFIQDR--DLERAQDLFDKMPRRNVITWTTMMNGYLQSMQ 299
Query: 121 FPT------------IRPDEVTYVGVLSACTH 140
T IRP++VT++G + AC++
Sbjct: 300 SETALQIFNGMLVEGIRPNQVTFLGAVDACSN 331
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++WT ++SGY G+VD A F +MPER+ V W M++ Y R R+A TLF M
Sbjct: 96 RNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGM 155
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ IL A + + G+++KA+++ +M ++ WT M+ G+A S
Sbjct: 156 PVRDAGS-----WNILLAAL-VRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDE 209
Query: 124 IR 125
R
Sbjct: 210 AR 211
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V AR+ F + P+RD V WTA++ Y R +A LF RPD V
Sbjct: 49 GRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD-------RPDARRNVVTW 101
Query: 80 TAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
TA + Y + G V++A+ + ++M ++ +W M+
Sbjct: 102 TALLSGYARAGRVDEAEALFQRMPERNVVSWNTML 136
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ +AR+ F E+D + W MI Y EA+ L+ +MQ +P++ T
Sbjct: 364 YAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTY 423
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVGLA--ISDP-----F 121
V +L+A + G V++ R+ M +R + +T + A + D F
Sbjct: 424 VGLLSACSH--SGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHF 481
Query: 122 PTIRPDEVTYVGVLSACTHNGNETF 146
+ P + +L C +GNE+
Sbjct: 482 LKVEPSSTVWNALLGGCNSHGNESI 506
>gi|302142629|emb|CBI19832.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 73/215 (33%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT +++GY+ G++D ARQ+ M E+ V W AMI GY+ F EAL +F
Sbjct: 218 MTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMF 277
Query: 61 PEMQTSNIRPDEFTIVRILT-------------------------------------AYM 83
+M I+ DEFT +L+ A +
Sbjct: 278 RKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATL 337
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------------- 123
Y KCG V++A++V +M KD +W A++ G A F T
Sbjct: 338 YWKCGKVDEARQVFNQMPVKDLVSWNAILSGYAAHCLFLTMPYLDSVSWNAMIAALGQHG 397
Query: 124 ----------------IRPDEVTYVGVLSACTHNG 142
I PD +T++ VLS C+H G
Sbjct: 398 HGAQALELFELMLKEDILPDRITFLTVLSTCSHAG 432
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 45/159 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
++ D+++ T +++ + + G ++AR+ F P RD V + AMI GY N A+
Sbjct: 74 IRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIE 133
Query: 59 LFPEMQTSNIRPDEFTIVRILTAY----------------------------------MY 84
LF ++ + RPD FT +L A ++
Sbjct: 134 LFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVF 193
Query: 85 CKCG---------DVEKAQRVLRKMLRKDKFTWTAMIVG 114
KC + A+++ +M +D+ +WT MI G
Sbjct: 194 VKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAG 232
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +RPD+ T+ +L+A MY KCGD++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR------PDEVTYVGVLSAC 138
KA V RKM K+ +W A+I GLA + F +R PD++T++GVLSAC
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Query: 139 THNG 142
H G
Sbjct: 468 VHAG 471
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEF---------- 73
AR+ F +P RD V W AM+ Y RV E +F +M + + P+
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAACR 265
Query: 74 -----------------------TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
++V MY KCG++ +A+RV ++ KD W A
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 111 MIVGLA------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
MI G A S +RPD++T GVLSAC+ G
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVG 369
>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Brachypodium distachyon]
Length = 635
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++W +++GY+ G V AR+ F +MP RD V W+ ++ GY++ AL +F +M
Sbjct: 195 RDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDM 254
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+R +E +V L+A M+ KCG V
Sbjct: 255 VEKGVRVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCV 314
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFPT--------IRPDEVTYVGVLSAC 138
A+ V M R+D F W AMI GLA D + P ++T+VGVL+AC
Sbjct: 315 AVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNAC 374
Query: 139 THNG 142
+ G
Sbjct: 375 SRCG 378
Score = 52.8 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V +AR+ F MP RD W AMI G ++A+ LF + P + T V +L
Sbjct: 312 GCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVL 371
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA--ISDPFPTIR----- 125
A +CG V + +R + M+ K + + ++G A +S+ I
Sbjct: 372 NA--CSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIA 429
Query: 126 PDEVTYVGVLSAC-THN 141
PD V + VLSAC THN
Sbjct: 430 PDPVLWGTVLSACKTHN 446
>gi|242091752|ref|XP_002436366.1| hypothetical protein SORBIDRAFT_10g001160 [Sorghum bicolor]
gi|241914589|gb|EER87733.1| hypothetical protein SORBIDRAFT_10g001160 [Sorghum bicolor]
Length = 523
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 49/187 (26%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV++W +V Y G V ARQ+F +MP + V W M+ R EAL LF EM
Sbjct: 190 DVVAWNALVDMYAKCGDVAAARQWFRRMPVAKTVVSWNTMLAALARAGEHGEALALFREM 249
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
Q + +RPD T V +L A MY KCG
Sbjct: 250 QRAGVRPDGATFVAVLGACAQLGALDTGRWVHAYMRRQPERDADAVVVSNALLDMYAKCG 309
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVL 135
V++A V M R+D +T+ +MI GLA +RP+ V +GVL
Sbjct: 310 AVDQAAAVFDGMARRDVYTYASMIAGLATHGRAEEALALFAAMRRAGGVRPNGVVLLGVL 369
Query: 136 SACTHNG 142
SAC H G
Sbjct: 370 SACCHAG 376
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 288 DSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMR 347
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +RPD+ T+ +L+A MY KCGD++
Sbjct: 348 IAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCGDLD 407
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR------PDEVTYVGVLSAC 138
KA V RKM K+ +W A+I GLA + F +R PD++T++GVLSAC
Sbjct: 408 KAIEVFRKMPCKNVASWNALICGLAFNGRGDEAIQHFQLMRNEEGLKPDDITFIGVLSAC 467
Query: 139 THNG 142
H G
Sbjct: 468 VHAG 471
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEF---------- 73
AR+ F +P RD V W AM+ Y RV E +F +M + + P+
Sbjct: 206 ARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNAVTVAVVLAACR 265
Query: 74 -----------------------TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
++V MY KCG++ +A+RV ++ KD W A
Sbjct: 266 DQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNA 325
Query: 111 MIVGLA------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
MI G A S +RPD++T GVLSAC+ G
Sbjct: 326 MITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVG 369
>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
Length = 627
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + ++SW ++ Y+ G V+ A F ++PE + + WTAMI G R EAL LF
Sbjct: 267 MEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALALF 326
Query: 61 PEMQT-SNIRPDEFTIVRIL------------------------TAY---------MYCK 86
M +I PD+FT +L AY MY K
Sbjct: 327 IVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMYAK 386
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----------DPFPT--IRPDEVTYVGV 134
CGDVE V ++ KD +W M+ G AI+ D + + PDEVT+ G+
Sbjct: 387 CGDVEGGTNVFGAIVNKDLVSWNTMLFGFAINGWANEALVVYDSMKSHEVCPDEVTFAGL 446
Query: 135 LSACTHNG 142
L+AC H+G
Sbjct: 447 LTACNHSG 454
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++ +SW ++ Y+ + +A++ F QMP R+ V W ++ GY R + L LF
Sbjct: 135 MRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSRSGNANQCLLLF 194
Query: 61 PEMQTSNIRPDEFTI 75
+M+ + D T+
Sbjct: 195 NKMRAEGMACDGATL 209
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 37/147 (25%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
+++ T ++ G AR F MP RD V W AM+ Y+R + R+ALTLF
Sbjct: 12 LVAATSRIASLGRAGDAASARAMFDAMPRRDAVAWNAMLTAYVRAGQPRDALTLFSRAPA 71
Query: 66 SNIRPDEFTI--------------------VRILTAY-------------MYCKCGDVEK 92
PD F++ R++ A MY KC +
Sbjct: 72 ----PDAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCARADD 127
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAISD 119
A R +M ++ +W +++ +SD
Sbjct: 128 AARAFGEMRERNALSWCSLLHAYVVSD 154
>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Cucumis sativus]
Length = 614
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ T +VS G + AR F MP+RD+V W AMI GY + + REAL LF MQ
Sbjct: 175 DLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQ 234
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ +E +++ ++TA MY KCG+V+
Sbjct: 235 MDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVD 294
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
+A +V +M K+ +TW+ I GLA++ I P+E+T++ VL C+
Sbjct: 295 RALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCS 354
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93
E D + + +I Y ++ +F +Q +PD +++A KCGD+ A
Sbjct: 142 EYDPHVESGLIFMYAEMSCLSSCHRVFESVQ----KPDLVCQTTMVSAC--AKCGDIGFA 195
Query: 94 QRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHN 141
+ + M ++D +W AMI G A ++ +EV+ + V++ACTH
Sbjct: 196 RNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHL 255
Query: 142 G 142
G
Sbjct: 256 G 256
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ GY+ G+ + A Q F +P ++ + WTA+I G+++ + EAL F
Sbjct: 156 MGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECF 215
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S + PD T++ ++ A MY +C
Sbjct: 216 REMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRC 275
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI------------SDPFPTIRPDEVTYVGVL 135
G ++ A++V +M ++ +W ++IVG A+ S +PD V+Y G L
Sbjct: 276 GCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGAL 335
Query: 136 SACTHNG 142
AC+H G
Sbjct: 336 MACSHAG 342
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G +D+ARQ F +MP+R V W ++I G+ EAL+ F MQ +PD
Sbjct: 268 LIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPD 327
Query: 72 EFTIVRILTAYMYCKCGDV--------EKAQRVLRKMLRKDKFTWTAMIV--------GL 115
V A M C + E +RV R + R + + + L
Sbjct: 328 G---VSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEAL 384
Query: 116 AISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152
+ P ++P+EV +L+AC GN N N
Sbjct: 385 NVLKNMP-MKPNEVILGSLLAACRTQGNIGLAENVMN 420
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 49/150 (32%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ Y G+V+ AR F QM R+ V W MIDGY+R +F +AL
Sbjct: 129 DVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDAL------- 181
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----- 119
+V + K+ +WTA+I G D
Sbjct: 182 ------------------------------QVFDGLPVKNAISWTALIGGFVKKDYHEEA 211
Query: 120 -------PFPTIRPDEVTYVGVLSACTHNG 142
+ PD VT + V++AC + G
Sbjct: 212 LECFREMQLSGVAPDYVTVIAVIAACANLG 241
>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
Length = 665
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ KDVISWT +++G+ N+G++ + + F MP++D + WTA+I G++ + EA+ F
Sbjct: 350 QQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFI 409
Query: 62 EMQTSNIRPDEFTIVRILTA---------------------------------YMYCKCG 88
EM +RP+ T+ +L+A MY KCG
Sbjct: 410 EMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCG 469
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVLS 136
+V ++ + + ++ +MI G A + + F + +P+E+T++GVLS
Sbjct: 470 NVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLS 529
Query: 137 ACTHNG 142
ACTH G
Sbjct: 530 ACTHVG 535
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 34/153 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW+ +V GY +G++ AR+ F +MPER+ V WTAMIDG++++ + LF
Sbjct: 185 MGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLF 244
Query: 61 PEMQTSN---IRPDEFTIV---------------------RILTAY----------MYCK 86
M+ + P T++ R+ + MYC+
Sbjct: 245 LRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCR 304
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
V +A+++ M RKD +W A+I G +D
Sbjct: 305 FSFVVEARKIFDMMNRKDVVSWNALIAGYVQND 337
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN--RFREALT 58
M +K+ ISWT +++ Y G + AR+ F +MP+R + AMI Y R N EA
Sbjct: 57 MPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASK 116
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYM---------------------------YCKCGDVE 91
LF EM+ N I + A M Y K G +E
Sbjct: 117 LFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLE 176
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG 114
+A R+ M +D +W++M+ G
Sbjct: 177 EATRIFEGMGERDVISWSSMVDG 199
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M+ ++ IS+ +++G G VD A + + + P RD V A+I GYL+V R EA
Sbjct: 121 MRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATR 180
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+F M ++ I YCK G + A+ + +M ++ TWTAMI G
Sbjct: 181 IFEGMGERDV------ISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDG 230
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + ++SGY+ G+++ A + F M ERD + W++M+DGY + + A LF M
Sbjct: 157 RDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERM 216
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDV 90
N+ T ++ +M C +V
Sbjct: 217 PERNV----VTWTAMIDGHMKMGCYEV 239
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV--R 77
G + A F++MP ++ + WTAM+ Y +A +F +M P T
Sbjct: 45 GDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKM------PQRTTASYNA 98
Query: 78 ILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
++TAY + +A ++ +M ++ ++ AMI GLA
Sbjct: 99 MITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLA 137
>gi|222636781|gb|EEE66913.1| hypothetical protein OsJ_23761 [Oryza sativa Japonica Group]
Length = 595
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 149 MDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 208
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 209 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 268
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CGDV +A+ + KM + TWT MI G A + D ++ D+ ++
Sbjct: 269 CGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 328
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 329 LAACAHGG 336
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 30/167 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTA-----------MIDGYLR 49
M ++DV+SW IV Y++ G A +F MPER+ V W MI GY
Sbjct: 76 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGNAVSWNLMISGYAM 135
Query: 50 VNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT 109
A ++F M + D + +++A Y K GD++ + M K+ +W
Sbjct: 136 SGDVEAARSVFDRMD----QKDVVSWTAMVSA--YAKIGDLDTVNELFDHMPVKNLVSWN 189
Query: 110 AMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNGN 143
AMI G + + RPDE T V V+SAC G+
Sbjct: 190 AMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGS 236
>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
mitochondrial [Vitis vinifera]
Length = 744
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ KDVISWT +++G+ N+G++ + + F MP++D + WTA+I G++ + EA+ F
Sbjct: 429 QQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFI 488
Query: 62 EMQTSNIRPDEFTIVRILTA---------------------------------YMYCKCG 88
EM +RP+ T+ +L+A MY KCG
Sbjct: 489 EMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCG 548
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVLS 136
+V ++ + + ++ +MI G A + + F + +P+E+T++GVLS
Sbjct: 549 NVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLS 608
Query: 137 ACTHNG 142
ACTH G
Sbjct: 609 ACTHVG 614
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 34/153 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW+ +V GY +G++ AR+ F +MPER+ V WTAMIDG++++ + LF
Sbjct: 264 MGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLF 323
Query: 61 PEMQTSN---IRPDEFTIV---------------------RILTAY----------MYCK 86
M+ + P T++ R+ + MYC+
Sbjct: 324 LRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCR 383
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
V +A+++ M RKD +W A+I G +D
Sbjct: 384 FSFVVEARKIFDMMNRKDVVSWNALIAGYVQND 416
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN--RFREALT 58
M +K+ ISWT +++ Y G + AR+ F +MP+R + AMI Y R N EA
Sbjct: 136 MPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTRSNPMMIGEASK 195
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYM---------------------------YCKCGDVE 91
LF EM+ N I + A M Y K G +E
Sbjct: 196 LFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLE 255
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG 114
+A R+ M +D +W++M+ G
Sbjct: 256 EATRIFEGMGERDVISWSSMVDG 278
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M+ ++ IS+ +++G G VD A + + + P RD V A+I GYL+V R EA
Sbjct: 200 MRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATR 259
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+F M ++ I YCK G + A+ + +M ++ TWTAMI G
Sbjct: 260 IFEGMGERDV------ISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDG 309
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + ++SGY+ G+++ A + F M ERD + W++M+DGY + + A LF M
Sbjct: 236 RDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERM 295
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDV 90
N+ T ++ +M C +V
Sbjct: 296 PERNV----VTWTAMIDGHMKMGCYEV 318
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV--R 77
G + A F++MP ++ + WTAM+ Y +A +F +M P T
Sbjct: 124 GDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKM------PQRTTASYNA 177
Query: 78 ILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
++TAY + +A ++ +M ++ ++ AMI GLA
Sbjct: 178 MITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLA 216
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 85/193 (44%), Gaps = 51/193 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ T +VSGY AR F +M ER+ V W A+I GY + EAL+LF
Sbjct: 315 MPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
++ ++ P +T IL A
Sbjct: 375 CLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEV 129
MY KCG VE+ V RKM+ +D +W AMI+G A + + F + +PD +
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHI 494
Query: 130 TYVGVLSACTHNG 142
T +GVLSAC H G
Sbjct: 495 TMIGVLSACGHAG 507
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 45/184 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +V+G G +D A F MPERD W +M+ G+ + +R EAL F
Sbjct: 81 MPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYF 140
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +E+T L+A MY KC
Sbjct: 141 AMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKC 200
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G+V AQ+V +M ++ +W ++I + P + PDEVT V+
Sbjct: 201 GNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVI 260
Query: 136 SACT 139
SAC
Sbjct: 261 SACA 264
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y+ G V+ F +M ERD V W AMI G+ + EAL LF EM
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA- 116
S +PD T++ +L+A + G VE+ + M R +D +T ++G A
Sbjct: 486 DSGEKPDHITMIGVLSACGH--AGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
I + P ++PD V + +L+AC + N T
Sbjct: 544 FLEEAKSIIEEMP-VQPDSVIWGSLLAACKVHRNITL 579
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 42/180 (23%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G V+ A+Q F +M +R+ V W ++I Y + EAL +F M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVML 245
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
S + PDE T+ +++A MY KC +
Sbjct: 246 ESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRI 305
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
++A+ + M ++ T+M+ G A++ R + V++ +++ T NG
Sbjct: 306 KEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNG 365
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + +V Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + PD+ T+ +L+A MY KCGD++
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSAC 138
KA V RKM K+ +W A+I GLA + ++PD++T++GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Query: 139 THNG 142
H G
Sbjct: 444 VHAG 447
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFTIVRILTA-- 81
AR+ F +P RD V W AM+ Y RV E + +M + + P+ T+ +L A
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241
Query: 82 -------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY KCG++ +A+RV ++ KD W A
Sbjct: 242 DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNA 301
Query: 111 MIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
MI G A + F ++ PD++T GVLSAC+ G
Sbjct: 302 MITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVG 345
>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
gb|AV533492 come from this gene [Arabidopsis thaliana]
Length = 864
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D +SWT ++ GY+ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 501 HDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDM 560
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
++P T +L++ MY KCG
Sbjct: 561 VRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCG 620
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVLS 136
+E A + KM++KD +W +MI+GL+ ++D + +P+ VT++GVLS
Sbjct: 621 AIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLS 680
Query: 137 ACTHNG 142
AC+H+G
Sbjct: 681 ACSHSG 686
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V+G I G ++ A+Q F MP RD V W AMI GY+ + EA LF
Sbjct: 267 MPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLF 326
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M N+ + Y YC+ GDV +A R+ +M ++ +WTAMI G A ++
Sbjct: 327 GDMSEKNV------VTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNEL 380
Query: 121 F--------------PTIRPDEVTYVGVLSACTHNGNE 144
+ + P+ T + + AC G E
Sbjct: 381 YREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 418
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT +V GY G V A + F +MPER+ V WTAMI G+ +REAL LF
Sbjct: 329 MSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLF 388
Query: 61 PEMQ--TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
EM+ + P+ T++ + A CG + R L + L IS
Sbjct: 389 LEMKKDVDAVSPNGETLISLAYA-----CGGLGVEFRRLGEQLHAQ-----------VIS 432
Query: 119 DPFPTIRPDE---------VTYVGVLSACTHNGNETFVINSCNL 153
+ + T+ D G++++ NE+F + SCN+
Sbjct: 433 NGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNI 476
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ WT ++S Y G +D AR F MPER+ V AM+ GY++ R EA TLF EM
Sbjct: 180 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 239
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+ + +T+ +LTA C G E A + +M ++ +W ++ GL
Sbjct: 240 NVV---SWTV--MLTA--LCDDGRSEDAVELFDEMPERNVVSWNTLVTGL 282
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++ +++GY+ +++ A F +MP ++ V WT M+ R +A+ LF
Sbjct: 206 MPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM N+ + ++ + GD+EKA++V M +D +W AMI G
Sbjct: 265 DEMPERNVVSWNTLVTGLI------RNGDMEKAKQVFDAMPSRDVVSWNAMIKG 312
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 50/152 (32%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D+ S I++ Y+ G ++ A F ++ D V WT+MIDGYL
Sbjct: 470 DLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYL--------------- 514
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ GDV +A + +K+ KD TWT MI GL ++ F
Sbjct: 515 ----------------------EAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAE 552
Query: 124 ------------IRPDEVTYVGVLSACTHNGN 143
++P TY +LS+ N
Sbjct: 553 AASLLSDMVRCGLKPLNSTYSVLLSSAGATSN 584
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K++++ T +++GY G+ D A+ F Q+P RD W AMI GY + EAL L
Sbjct: 228 MPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLH 287
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M ++PD T++ +LTA MYCKC
Sbjct: 288 SQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC 347
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPTIR-----PDEVTYVGVL 135
G + ++ R++ D +W AMI A F +R PD +T++ +L
Sbjct: 348 GSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLL 407
Query: 136 SACTHNG 142
SAC H G
Sbjct: 408 SACGHAG 414
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 23/165 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VIS+T +V GY G+++ AR F MP+++ V WT MI GY+ +F EA LF
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M NI + ++T YCK G +KA+ + ++ +D +W AMI G A +
Sbjct: 226 EQMPDKNI----VAMTAMITG--YCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 279
Query: 121 FPT------------IRPDEVTYVGVLSACT-----HNGNETFVI 148
++PD T + VL+AC+ G +T V+
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVL 324
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G I ++D A QYF MP+R+ W AMI G +R +R EA LF
Sbjct: 104 MPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLF 163
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM N+ I Y K G++E+A+ + M +K+ +WT MI G +
Sbjct: 164 EEMPRRNV------ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGK 217
Query: 121 F 121
F
Sbjct: 218 F 218
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV ++ + G + ARQ F +MP RD V W ++I GY + F E+ LF M
Sbjct: 45 QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGD---VEKAQRVLRKMLRKDKFTWTAMIVGL 115
T N+ + M C + +++A + + M +++ +W AMI GL
Sbjct: 105 PTKNV---------VSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGL 150
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + + F Q+ D V W AMI + R + AL F EM+++ + PD
Sbjct: 340 LITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPD 399
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVL 97
T + +L+A CG K L
Sbjct: 400 GITFLSLLSA-----CGHAGKVHESL 420
Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 14/124 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALT 58
+ DV+SW +++ + G D A F +M E D + + +++ + E+L
Sbjct: 362 HPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLN 421
Query: 59 LFPEMQTSNI---RPDEFT-IVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAMIV 113
F M S RP+ F +V IL+ + G VEKA +++++M D W A++
Sbjct: 422 WFNSMIESYKIVPRPEHFACLVDILS-----RGGQVEKAYKIIQEMPFEADCGIWGALLA 476
Query: 114 GLAI 117
+
Sbjct: 477 ACHV 480
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + +V Y G++ AR+ F + ++D V W AMI GY + EA++LF M+
Sbjct: 264 DSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLFHNMK 323
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + PD+ T+ +L+A MY KCGD++
Sbjct: 324 KAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAKCGDLD 383
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSAC 138
KA V RKM K+ +W A+I GLA + ++PD++T++GVLSAC
Sbjct: 384 KAIEVFRKMRCKNVASWNALICGLAFNGQGDEAIQHFELMRNEDGLKPDDITFIGVLSAC 443
Query: 139 THNG 142
H G
Sbjct: 444 VHAG 447
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 68/164 (41%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFTIVRILTA-- 81
AR+ F +P RD V W AM+ Y RV E + +M + + P+ T+ +L A
Sbjct: 182 ARKVFNGIPSRDVVSWNAMMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACR 241
Query: 82 -------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY KCG++ +A+RV ++ KD W A
Sbjct: 242 DEGDLVLGRWVEEWSKSAGMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNA 301
Query: 111 MIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
MI G A + F ++ PD++T GVLSAC+ G
Sbjct: 302 MITGYAQNGMSNEAISLFHNMKKAGVCPDKITLAGVLSACSAVG 345
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 51/187 (27%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SW +++ + G + AR+ F MPERD V W+ MI GY++ R AL LF M ++
Sbjct: 345 SWNALLAALLRNGLIREARELFDDMPERDTVSWSTMISGYVQTGRSDMALKLFYSMLNTS 404
Query: 68 IRPDEFTIVRILTAY---------------------------------MYCKCGDVEKAQ 94
I P+E T+ L+A MY KCG + A
Sbjct: 405 IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSGLIDMYAKCGSIADAV 464
Query: 95 RVLRKMLRKDKFT----WTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLSAC 138
+ ++ DKF+ W AMI LAI D F +I+P+ +T++GVLSAC
Sbjct: 465 QFFNRV--NDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKPNSITFIGVLSAC 522
Query: 139 THNGNET 145
H G T
Sbjct: 523 CHAGTVT 529
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ++W +++GY+ +D+A + F ++PERD V W +IDGY+ + +A+ +
Sbjct: 205 MTYRNTVTWNVMLNGYVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAY 264
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M + +++ ++ + + V + Q+ L ++ K+ F A +
Sbjct: 265 VQM-VGEVGANDYEVLLVDLMKACARYSAVTEGQQ-LHTVILKNGFDAHAFV 314
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFP 61
+D + +++ G +D A+ +MP RD V +T ++ + R A+ +F
Sbjct: 74 RDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTSFARAGHAARAVAVFR 133
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS--- 118
M + N+ P+E T+ +TA + +CG MI G A+
Sbjct: 134 SMLSENVVPNEATLAGAITA--FARCGAPAT----------------VGMIHGFALQRAL 175
Query: 119 DPFPTIRPDEV-TYVGVLSACT 139
D F + + V Y GVL C+
Sbjct: 176 DGFVIVATNLVHAYAGVLELCS 197
>gi|115479117|ref|NP_001063152.1| Os09g0411600 [Oryza sativa Japonica Group]
gi|50252330|dbj|BAD28363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631385|dbj|BAF25066.1| Os09g0411600 [Oryza sativa Japonica Group]
Length = 548
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 43/185 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W +++ Y+ ++D A +F +MP RD V WT MI G + + EA+ LF
Sbjct: 221 MPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNAGKAAEAVELF 280
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
M+ +N + D T+V +LTA MY K
Sbjct: 281 WRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVK 340
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI--RPDEVTYVGVLSA 137
CG VE A R+ M R+ +WT MI GLAI D F + RPD T + VL A
Sbjct: 341 CGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQERPDGATLLAVLLA 400
Query: 138 CTHNG 142
C++ G
Sbjct: 401 CSNAG 405
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y+ G V+ A + F MP R V WT MI G R EAL LF MQ RPD
Sbjct: 334 LINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE---RPD 390
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T++ +L A G V+ ++ + M R
Sbjct: 391 GATLLAVLLA--CSNAGRVDDGRQYFQSMER 419
>gi|125605669|gb|EAZ44705.1| hypothetical protein OsJ_29332 [Oryza sativa Japonica Group]
Length = 548
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 43/185 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W +++ Y+ ++D A +F +MP RD V WT MI G + + EA+ LF
Sbjct: 221 MPGRTVAAWNCMLAAYVRCCEMDAALWFFNEMPGRDSVAWTTMIAGCVNAGKAAEAVELF 280
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
M+ +N + D T+V +LTA MY K
Sbjct: 281 WRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEGRQWRTVLLDNALINMYVK 340
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI--RPDEVTYVGVLSA 137
CG VE A R+ M R+ +WT MI GLAI D F + RPD T + VL A
Sbjct: 341 CGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQERPDGATLLAVLLA 400
Query: 138 CTHNG 142
C++ G
Sbjct: 401 CSNAG 405
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y+ G V+ A + F MP R V WT MI G R EAL LF MQ RPD
Sbjct: 334 LINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLFHRMQE---RPD 390
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T++ +L A G V+ ++ + M R
Sbjct: 391 GATLLAVLLA--CSNAGRVDDGRQYFQSMER 419
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+VD AR F +MPE+D V W M+DGY + EA LF
Sbjct: 265 MTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELF 324
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N+ + +++A YCK GD+E A+ + KM K+ TWT M+ A
Sbjct: 325 QRMPGRNV----VSWSTVVSA--YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGL 378
Query: 121 F------------PTIRPDEVTYVGVLSACTHNG 142
I D V V +L+AC +G
Sbjct: 379 VGEAGRLFTEMKEAAIELDVVAVVSILAACAESG 412
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 327 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLF 386
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + I D +V IL A M+CKC
Sbjct: 387 TEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKC 446
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V +A + +++ KD +W +I G A+ + F ++ PD VT + V
Sbjct: 447 GCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINV 506
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 507 LSACTHMG 514
Score = 42.7 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90
++ E+D V W +I G+ +AL LF +M+ PD T++ +L+A + G V
Sbjct: 459 EIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTH--MGLV 516
Query: 91 EKAQRVLRKM-----LRKDKFTWTAMI----VGLAISDPFPTIR-----PDEVTYVGVLS 136
E+ +R M ++ + + M+ G I + I+ P+EV + +LS
Sbjct: 517 EEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLS 576
Query: 137 ACTHNGN 143
AC + N
Sbjct: 577 ACRLHKN 583
>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g32415, mitochondrial; Flags: Precursor
gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 47/185 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SWT ++ GY+ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 399 DKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 458
Query: 65 TSNIRPDEFTIVRILTA-----------------------------------YMYCKCGD 89
++P T +L++ MY KCG
Sbjct: 459 RCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGA 518
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVLSA 137
+E A + KM++KD +W +MI+GL+ ++D + +P+ VT++GVLSA
Sbjct: 519 IEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSA 578
Query: 138 CTHNG 142
C+H+G
Sbjct: 579 CSHSG 583
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V+G I G ++ A+Q F MP RD V W AMI GY+ + EA LF
Sbjct: 164 MPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLF 223
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M N+ + Y YC+ GDV +A R+ +M ++ +WTAMI G A ++
Sbjct: 224 GDMSEKNV------VTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNEL 277
Query: 121 F--------------PTIRPDEVTYVGVLSACTHNGNE 144
+ + P+ T + + AC G E
Sbjct: 278 YREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 315
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT +V GY G V A + F +MPER+ V WTAMI G+ +REAL LF
Sbjct: 226 MSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLF 285
Query: 61 PEMQ--TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
EM+ + P+ T++ + A CG + R L + L IS
Sbjct: 286 LEMKKDVDAVSPNGETLISLAYA-----CGGLGVEFRRLGEQLHAQ-----------VIS 329
Query: 119 DPFPTIRPDE---------VTYVGVLSACTHNGNETFVINSCNL 153
+ + T+ D G++++ NE+F + SCN+
Sbjct: 330 NGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNI 373
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ WT ++S Y G +D AR F MPER+ V AM+ GY++ R EA TLF EM
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 136
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+ + +T+ +LTA C G E A + +M ++ +W ++ GL
Sbjct: 137 NVV---SWTV--MLTA--LCDDGRSEDAVELFDEMPERNVVSWNTLVTGL 179
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++ +++GY+ +++ A F +MP ++ V WT M+ R +A+ LF
Sbjct: 103 MPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELF 161
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
EM N+ + ++ + GD+EKA++V M +D +W AMI G +D
Sbjct: 162 DEMPERNVVSWNTLVTGLI------RNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIEND 214
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 50/152 (32%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D+ S I++ Y+ G ++ A F ++ D V WT+MIDGYL
Sbjct: 367 DLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYL--------------- 411
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ GDV +A + +K+ KD TWT MI GL ++ F
Sbjct: 412 ----------------------EAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAE 449
Query: 124 ------------IRPDEVTYVGVLSACTHNGN 143
++P TY +LS+ N
Sbjct: 450 AASLLSDMVRCGLKPLNSTYSVLLSSAGATSN 481
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 91/192 (47%), Gaps = 46/192 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++SGY G++ AR+ F QM ERD WTAM GY+R ++ EAL LF
Sbjct: 150 MAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELF 209
Query: 61 PEMQ-TSNIRPDEFT-----------------------IVRI----------LTAYMYCK 86
MQ N + ++FT I+RI + MY K
Sbjct: 210 RAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGK 269
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAI-SDPFPT-IRPDEVTYVGV 134
CG + +A+ + K + +D +WTAMI G A+ SD + I P+E T+ GV
Sbjct: 270 CGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGV 329
Query: 135 LSACTHNGNETF 146
L+AC + E
Sbjct: 330 LNACADHAAEEL 341
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G + AR+ F MP D V WT++I GY + + EAL F + S +
Sbjct: 362 STLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQ 421
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTA-----MIVGLA-------- 116
PD T V +L+A + G V+K + K T TA +I L+
Sbjct: 422 PDHITFVGVLSACTH--AGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEA 479
Query: 117 --ISDPFPTIRPDEVTYVGVLSACTHNGN 143
I D P I PD+ + +L C +GN
Sbjct: 480 EDIIDKMP-IEPDKFLWASLLGGCRIHGN 507
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ YI + A++ F +M ERD W MI GY + R +EA LF +M D
Sbjct: 130 ILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQM----TERD 185
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
F+ + + Y+ + E+A + R M R + F
Sbjct: 186 NFSWTAMTSGYV--RHDQHEEALELFRAMQRHENF 218
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 61/126 (48%), Gaps = 14/126 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM----PERDYVLWTAMIDGYLRVNRFREA 56
M D++SWT ++SGY GQ D A Q+F + + D++ + ++ +
Sbjct: 384 MPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKG 443
Query: 57 LTLFPEMQTSN---IRPDEFT-IVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAM 111
L F ++ + D + ++ +L+ + G +++A+ ++ KM + DKF W ++
Sbjct: 444 LEYFDSIKEKHGLTHTADHYACLIDLLS-----RSGRLQEAEDIIDKMPIEPDKFLWASL 498
Query: 112 IVGLAI 117
+ G I
Sbjct: 499 LGGCRI 504
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97
V+ ++D Y++ N A LF EM ++ I Y K G +++A+++
Sbjct: 125 VISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISG------YAKAGRLQEARKLF 178
Query: 98 RKMLRKDKFTWTAMIVGLAISD 119
+M +D F+WTAM G D
Sbjct: 179 DQMTERDNFSWTAMTSGYVRHD 200
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ISWT +++ + G V+ AR+YF +MPER+ + W +M+ Y++ + E L ++
Sbjct: 408 MPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVY 467
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M ++ D T ++A MY +C
Sbjct: 468 IQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRC 527
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTIR-----PDEVTYVGVL 135
G +E+AQ++ ++ K+ +W AM+ G A + + F + PD+++YV VL
Sbjct: 528 GQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVL 587
Query: 136 SACTHNG 142
S C+H+G
Sbjct: 588 SGCSHSG 594
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 33/147 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N + W ++ GY G V A + FA+MPERD V W MI + E L F E
Sbjct: 177 NPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLE 236
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M RP+ T +L+A MY KCG
Sbjct: 237 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR 296
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+E A++V + + +WT++I G+A
Sbjct: 297 LESARQVFDGLTEHNAVSWTSLIGGVA 323
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 72/189 (38%), Gaps = 54/189 (28%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-------------VN 51
+V SW ++SG+ + GQ+ A + F +MPERD V W +M+ GY +
Sbjct: 69 NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLG 128
Query: 52 RFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC-------------------------- 85
+ AL L + + D +L Y+ C
Sbjct: 129 YLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIY 188
Query: 86 ---KCGDVEKAQRVLRKMLRKDKFTWTAMI-------VGLAISDPF-----PTIRPDEVT 130
K G V+KA + KM +D +W MI G + F RP+ +T
Sbjct: 189 GYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMT 248
Query: 131 YVGVLSACT 139
Y VLSACT
Sbjct: 249 YASVLSACT 257
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 33/145 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G+++ ARQ F + E + V WT++I G + EAL LF +M+
Sbjct: 280 DVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMR 339
Query: 65 TSNIRPDEFTIVRILT---------------------------------AYMYCKCGDVE 91
+ D+FT+ +L MY KCGDV
Sbjct: 340 EVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVW 399
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA 116
KA M +D +WTAMI +
Sbjct: 400 KANHAFELMPIRDIISWTAMITAFS 424
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+V+ Y GQ++ A++ F+ + ++ V W AM+ GY + + R+ + +F +M P
Sbjct: 519 SVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVP 578
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA------- 116
D+ + V +L+ + G V + Q M + + F ++G A
Sbjct: 579 DQISYVSVLSGCSH--SGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAK 636
Query: 117 -ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ + P +P+ + +L+AC +GN
Sbjct: 637 NLINQMP-FKPNAAIWGALLAACRIHGN 663
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y G V A F MP RD + WTAMI + + +A F +M N+
Sbjct: 388 LVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNV--- 444
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTY 131
+ +L YM + G E+ +V +MLR+ ++ D +T+
Sbjct: 445 -ISWNSMLATYM--QRGYWEEGLKVYIQMLREG-------------------VKTDWITF 482
Query: 132 VGVLSACT 139
+SAC
Sbjct: 483 STSISACA 490
>gi|115471447|ref|NP_001059322.1| Os07g0260000 [Oryza sativa Japonica Group]
gi|113610858|dbj|BAF21236.1| Os07g0260000 [Oryza sativa Japonica Group]
Length = 750
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SWT +VS Y G +D + F MP ++ V W AMI GY +R+ EAL F
Sbjct: 270 MDQKDVVSWTAMVSAYAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTF 329
Query: 61 PEMQTSN-IRPDEFTIVRILTAY---------------------------------MYCK 86
M RPDE T+V +++A M+ K
Sbjct: 330 QLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAK 389
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPF--------PTIRPDEVTYVGV 134
CGDV +A+ + KM + TWT MI G A + D ++ D+ ++
Sbjct: 390 CGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAA 449
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 450 LAACAHGG 457
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 77/196 (39%), Gaps = 54/196 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++DV+SW IV Y++ G A +F MPER+ V W ++ G+ R+ A +F
Sbjct: 177 MVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDMVTARAVF 236
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M + N + L Y GDVE A+ V +M +KD +WTAM+ A
Sbjct: 237 DRMPSRN------AVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGD 290
Query: 117 ------ISDPFPT----------------------------------IRPDEVTYVGVLS 136
+ D P RPDE T V V+S
Sbjct: 291 LDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 350
Query: 137 ACTHNGNETFVINSCN 152
AC G+ + CN
Sbjct: 351 ACAQLGS----VEYCN 362
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+I+W ++SGY+N G+++ A+ +FAQMPE++ + WT MI G + +AL LF
Sbjct: 354 MPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLF 413
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ P+++ +TA MY +C
Sbjct: 414 NQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARC 473
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ + M D +W +MI L I PD T++ VL
Sbjct: 474 GIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVL 533
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 534 SACSHAG 540
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ WT +++GY+ G + AR+ M E+ + W AMI GYL F +ALTLF
Sbjct: 218 MPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLF 277
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------------------------------YM 83
+M+ ++ DE T +++A +
Sbjct: 278 RKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITL 337
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------LAISDPFPTIRPDE--VTYVGVL 135
Y K G V+ A+++ +M KD TW ++ G + + F P++ +T+ ++
Sbjct: 338 YWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMI 397
Query: 136 SACTHNG 142
S NG
Sbjct: 398 SGLAQNG 404
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 45/155 (29%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DVI+ T +++ Y G + +AR+ F + P RD V + AMI GY +N A+ LF
Sbjct: 78 DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137
Query: 63 MQTSNIRPDEFTIVRILTA----------------------------------YMYCKCG 88
M+ +N +PD+FT +L+A +Y KC
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALLSVYVKCA 197
Query: 89 ---------DVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ A+++ +M ++++F WT +I G
Sbjct: 198 SSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITG 232
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 53/140 (37%), Gaps = 49/140 (35%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G+VD AR+ F +MP +D + W ++ GY+ R
Sbjct: 334 LITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGR------------------- 374
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------ 119
+E+A+ +M K+ TWT MI GLA +
Sbjct: 375 ------------------MEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQM 416
Query: 120 PFPTIRPDEVTYVGVLSACT 139
P++ + G ++AC+
Sbjct: 417 KLDGYEPNDYAFAGAITACS 436
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 49/130 (37%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
AR+ F +MP+R+ +WT +I G Y
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITG-------------------------------------Y 233
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYV 132
+ GD+ A+ +L M + W AMI G F ++ DE TY
Sbjct: 234 VRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYT 293
Query: 133 GVLSACTHNG 142
V+SAC G
Sbjct: 294 SVISACADGG 303
>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
lyrata]
Length = 606
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ISW ++ GY+ G+++ A+ F MP RD V MIDGY ++ +A TLF
Sbjct: 240 MPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLF 299
Query: 61 PEM--------------------------------QTSNIRPDEFTIVRILTAY------ 82
+M + S++ PDE T+V IL+A
Sbjct: 300 DQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRL 359
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG ++ A V + K W AMI GL
Sbjct: 360 SKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGL 419
Query: 116 AI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
A+ F +I PD++T+VGVL+AC+H+G
Sbjct: 420 AVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSG 458
Score = 76.3 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY + V+IA + FA+MPE+D + W +MIDGY++ R +A LF
Sbjct: 211 KNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDV 270
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V +A+ + +M +D + +M+ G
Sbjct: 271 MP----RRDVVTCATMIDG--YAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHM 324
Query: 115 --LAISDPFPT---IRPDEVTYVGVLSACTHNG 142
L I + + PDE T V +LSA G
Sbjct: 325 EALEIFNDMEKESHLSPDETTLVIILSAIAQLG 357
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + ARQ F +MP+RD V + +MI+GY++ + RE L
Sbjct: 146 WSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDL 205
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P + I + +++ Y G V A ++ +M KD +W +MI G
Sbjct: 206 MPREMKNLISWNS-----MISGYAQTSEG-VNIASKLFAEMPEKDLISWNSMIDG 254
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV +W +++GY G ++ A + F MP R+ WTAMI GY + ++ +AL++F
Sbjct: 143 MTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMF 202
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M + + +RP+E T+ +L A MY +
Sbjct: 203 LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYAR 262
Query: 87 CGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDP--------FPTIR----PDEVTYVG 133
CG ++KA V ++ R++ +W +MI+GLA+ + +R PD+VT+VG
Sbjct: 263 CGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322
Query: 134 VLSACTHNG 142
VL ACTH G
Sbjct: 323 VLLACTHGG 331
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 59/151 (39%), Gaps = 50/151 (33%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + T +V Y G + +AR+ F +M RD W +MI GY R
Sbjct: 116 DVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYAR--------------- 160
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT- 123
CGD+E A + R M ++ +WTAMI G A + +
Sbjct: 161 ----------------------CGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKA 198
Query: 124 ------------IRPDEVTYVGVLSACTHNG 142
+RP+EVT VL AC + G
Sbjct: 199 LSMFLMMEEETEMRPNEVTLASVLPACANLG 229
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ + ++ YI G +D AR+ F ++ E+D V WT MI G + + +AL LF EM
Sbjct: 255 DQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEML 314
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N RPD +TI ++++ MYCKCG
Sbjct: 315 LENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTR 374
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACT 139
A + M ++ +W +MI G A++ ++PD VT+VGVLSAC
Sbjct: 375 DAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACV 434
Query: 140 HNG 142
H G
Sbjct: 435 HAG 437
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 14/136 (10%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++D AR+ F +M R+ V W MI GYL+ + + + LF EMQ SN++PD+ T
Sbjct: 200 YARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTA 259
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPT 123
+L AY+ + G +++A++V ++ KD+ WT MIVG A +
Sbjct: 260 SSVLGAYI--QAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLEN 317
Query: 124 IRPDEVTYVGVLSACT 139
RPD T V+S+C
Sbjct: 318 ARPDGYTISSVVSSCA 333
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW ++S Y G V+ R F MP RD V + +I G+ R AL +F
Sbjct: 84 MTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVF 143
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ ++P E+T V +L A +Y +C
Sbjct: 144 LRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARC 203
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISDP-----------FPTIRPDEVTYVGVL 135
G++++A+R+ +M+ ++ TW MI G L P ++PD+VT VL
Sbjct: 204 GEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVL 263
Query: 136 SACTHNG 142
A G
Sbjct: 264 GAYIQAG 270
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D++ + +V Y G A F+ M R+ V W +MI GY + EAL+L+
Sbjct: 354 NDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYEN 413
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
M N++PD T V +L+A ++ G VE+ + M
Sbjct: 414 MLEENLKPDSVTFVGVLSACVH--AGLVEEGKEYFCSM 449
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 11/104 (10%)
Query: 48 LRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
R + +A L M +P D F R+L +Y K G++ A+++ +M ++D F
Sbjct: 33 FRASDVDQAKRLKSHMHLHLFKPNDTFIHNRLLN--LYAKSGEISHARKLFDEMTQRDNF 90
Query: 107 TWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
+W AM+ A S +R D V+Y V+S NG
Sbjct: 91 SWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNG 134
>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 582
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 51/188 (27%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+D++ W ++ GY +G++D AR F +MPER+ + W+ ++DGY+R EAL LF
Sbjct: 234 NRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQR 293
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M I+PD V TA MY KCG
Sbjct: 294 MLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGR 353
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI---------------SDPFPTIRPDEVTYVGV 134
++ + + M K TW MI+GL ++ P D+++ + V
Sbjct: 354 LDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPI---DDLSVLAV 410
Query: 135 LSACTHNG 142
L+ACTH G
Sbjct: 411 LTACTHAG 418
Score = 79.3 bits (194), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 1 MKNKDVISWTDIVSGYINR-GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M +D SW ++ Y R G VD AR+ F + P RD V W +MIDGY R R EA L
Sbjct: 200 MPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMIDGYARQGRMDEARAL 259
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
F EM P+ I + Y +CG+ +A + ++MLR
Sbjct: 260 FEEM------PERNVISWSIVVDGYVRCGEPSEALELFQRMLRCG--------------- 298
Query: 120 PFPTIRPDEVTYVGVLSACTHNG 142
I+PD V VG +AC G
Sbjct: 299 ----IKPDRVAAVGAFTACAQLG 317
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ Y+ G++D+ + F MP++ V W MI G + A+ LF +M+
Sbjct: 337 DVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQME 396
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104
D+ +++ +LTA + G + + + +M RKD
Sbjct: 397 AEGAPIDDLSVLAVLTACTH--AGLISEGLGIFHRM-RKD 433
>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
Length = 585
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY G++++AR+ F +M +++ + W+ MIDGY +EAL LF
Sbjct: 234 MPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLF 293
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I+PD ++V ++A MY KC
Sbjct: 294 RQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKC 353
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++A+ + M ++ +W MIVGL ++ I D++ ++GVL
Sbjct: 354 GSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVL 413
Query: 136 SACTH 140
AC+H
Sbjct: 414 MACSH 418
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 25/155 (16%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR----VNRFREALTL 59
KD++SW ++ GY+ G+++ A+ F +MPERD V W+ MIDGY + VNR R
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRAR---VF 230
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
F M T ++ I Y K G++E A+ + KML+K+ +W+ MI G A
Sbjct: 231 FDSMPTRDLVSWNSMIDG------YAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHR 284
Query: 120 PFPT------------IRPDEVTYVGVLSACTHNG 142
I+PD V+ VG +SAC+ G
Sbjct: 285 DSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLG 319
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + AR+ F + + D VLWT+MI GY++ +AL+L+ MQ I
Sbjct: 352 TALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGIL 411
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P+E T+ +L A MY KCG++E+ V
Sbjct: 412 PNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIV 471
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
R+M +D +W AMI GL+ + + F +R PD+VT+V VLSAC+H G
Sbjct: 472 FRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMG 529
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 72/180 (40%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +++ Y G + AR+ F +MPER+ V W MI GY EA +F M+
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+EF +L+A MY KCG ++
Sbjct: 205 REEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLD 264
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
+ +V K+ TW+AMI G A S F I P E T VGVL+AC+
Sbjct: 265 DSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACS 324
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y G +D + Q F +++ + W+AMI GY + +AL LF M + I P
Sbjct: 253 LVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPS 312
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT+V +L A MY K G E A++
Sbjct: 313 EFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFN 372
Query: 99 KMLRKDKFTWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACTH 140
+ + D WT+MI G L I P+E+T VL AC++
Sbjct: 373 YLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSN 426
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 16/153 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQV--DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
+ NKDVISW +++GY +G + F +M + + G ++
Sbjct: 69 IHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIF 128
Query: 59 LFPEMQTSNIRPDEFTIVRILTAY--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ I+ F V + ++ MYCK G + +A+ V +M +++ TW MI G A
Sbjct: 129 FGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYA 188
Query: 117 IS-------DPFPTIRPD-----EVTYVGVLSA 137
I + F +R + E + VLSA
Sbjct: 189 IQRLAGEAFEVFELMRREEEDVNEFAFTSVLSA 221
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 276 MPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLF 335
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ + + D +V IL A M+CKC
Sbjct: 336 TQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKC 395
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGV 134
G V +A V ++ KD +W +I G A+ D F + RPD VT + V
Sbjct: 396 GCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINV 455
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 456 LSACTHMG 463
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++ + +G+V AR+ F +MP++D V W ++DGY + + +A LF
Sbjct: 214 MPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELF 273
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M P+ + YCK GD+E A+ + KM K+ TWT M+ A +
Sbjct: 274 QCM------PERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGL 327
Query: 121 F------------PTIRPDEVTYVGVLSACTHNGN 143
+ D V +L+AC +G+
Sbjct: 328 VEEAGRLFTQMKEAAVELDVAAVVSILAACAESGS 362
Score = 52.4 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G A + F +MP RD V W + + +R A +F EM PD
Sbjct: 194 LIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEM------PD 247
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----------AISDPF 121
+ T+ Y K G +E A + + M ++ +W+ ++ G I D
Sbjct: 248 KDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKM 307
Query: 122 PTIRPDEVTYVGVLSACTHNG 142
PT + VT+ ++SAC NG
Sbjct: 308 PT--KNLVTWTIMVSACAQNG 326
Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 22/130 (16%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90
++ E+D V W +I G+ +AL F +M+ RPD T++ +L+A + G V
Sbjct: 408 EIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTH--MGFV 465
Query: 91 EKAQRVLRKMLRKDKFT-----WTAMI------------VGLAISDPFPTIRPDEVTYVG 133
E+ ++ M R + MI VGL S P+ P+EV +
Sbjct: 466 EEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWD---PNEVIWGS 522
Query: 134 VLSACTHNGN 143
+LSAC + N
Sbjct: 523 LLSACRLHKN 532
>gi|297846216|ref|XP_002890989.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336831|gb|EFH67248.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 792
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 47/185 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SWT ++ GY++ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 429 DKVSWTSMIDGYLDAGDVSRAFDLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 488
Query: 65 TSNIRPDEFTIVRILTAY-----------------------------------MYCKCGD 89
++P T +L++ MY KCG
Sbjct: 489 RCGLKPLNSTYSVLLSSAGATSNLDQGKHLHCVIAKTTACYDPDLILQNSLVSMYAKCGA 548
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPF---------PTIRPDEVTYVGVLSA 137
++ A + KM+RKD +W ++I+GL+ ++D ++P+ VT++GVLSA
Sbjct: 549 IDDAYEIFSKMVRKDIVSWNSVIIGLSHHGLADKALKLFKEMLDSGMKPNSVTFLGVLSA 608
Query: 138 CTHNG 142
C+H+G
Sbjct: 609 CSHSG 613
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V+G I G+ + A+Q F MP RD V W AMI GY+ EA LF
Sbjct: 194 MPERNVVSWNTLVTGLIRNGETEKAKQVFDAMPSRDAVSWNAMIKGYIENGGMEEAKLLF 253
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N+ + Y YC+ GDV +A R+ +M ++ +WTAMI G A
Sbjct: 254 ENMSEKNV------VTWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFA 303
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT +V GY G V A + F +MPER+ V WTAMI G+ +REAL LF
Sbjct: 256 MSEKNVVTWTSMVYGYCRYGDVHEAYRLFCEMPERNVVSWTAMISGFAWNEFYREALMLF 315
Query: 61 PEMQ--TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
EM+ I P+ T++ + A CG + R L + L IS
Sbjct: 316 LEMKKDVDAISPNGETLISLAYA-----CGGLGVGFRRLGEQLHAQ-----------VIS 359
Query: 119 DPFPTIRPDE---------VTYVGVLSACTHNGNETFVINSCNL 153
+ + ++ D G++++ NE+F + SCN+
Sbjct: 360 NGWESVDHDGRLAKSLVHMYASFGLIASAQSLLNESFDLQSCNI 403
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 7/110 (6%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
VI T +++ Y G +D AR F MPER+ V AM+ GY++ R EA TLF EM
Sbjct: 107 VIYCTSLLTKYAKAGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRLNEAWTLFREMPK 166
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+ + +T+ +LTA C G + A + +M ++ +W ++ GL
Sbjct: 167 NVV---SWTV--MLTA--LCDDGRSDDAVELFDEMPERNVVSWNTLVTGL 209
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 50/152 (32%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D+ S I+S Y+ G + A F ++ D V WT+MIDGYL
Sbjct: 397 DLQSCNIIISAYLKNGDFERAETLFRRVESLHDKVSWTSMIDGYL--------------- 441
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
GDV +A + +K+ KD TWT MI GL ++ F
Sbjct: 442 ----------------------DAGDVSRAFDLFQKLHDKDGVTWTVMISGLVQNELFAE 479
Query: 124 ------------IRPDEVTYVGVLSACTHNGN 143
++P TY +LS+ N
Sbjct: 480 AASLLSDMVRCGLKPLNSTYSVLLSSAGATSN 511
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
+SWT I+ Y+N G + AR F MP+R+ V W M+DGY++ A LF EM
Sbjct: 249 VSWTAIIVAYVNNGGIIDARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEM--- 305
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP---- 122
P+ Y K G++E A+ + K+ +D F+W+AMI G A + +P
Sbjct: 306 ---PERTATACTSLIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYA-QNGYPGEAL 361
Query: 123 ---------TIRPDEVTYVGVLSACTHNGN 143
I PDE+ VG++SAC+ GN
Sbjct: 362 RTFDEFQGQGIHPDELVVVGLMSACSQLGN 391
Score = 72.0 bits (175), Expect = 8e-11, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + T ++ GY G ++ AR F ++ +RD W+AMI GY + EAL F
Sbjct: 305 MPERTATACTSLIGGYAKAGNMEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTF 364
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
E Q I PDE +V +++A M K
Sbjct: 365 DEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAK 424
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG++E+A + M +D F++ +++ G + + PD + V
Sbjct: 425 CGNLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIV 484
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 485 LTACCHAG 492
Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 12 IVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+++G +N G ++ A F MP RD + +++ GY +A+ LF M
Sbjct: 414 VLAGLVNMNAKCGNLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLFSRMLLEG 473
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ PD +LTA C G VE+ ++ M
Sbjct: 474 LTPDNAVFTIVLTA--CCHAGLVEEGKKFFDIM 504
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++WT +V G G VD AR F MPER+ V W AMI GY R +R EAL LF
Sbjct: 191 MPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLF 250
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-------- 112
+M +I I T ++ K D+++A+++ +M ++ TWT M+
Sbjct: 251 TKMPHRDIASCNIMI----TGFIQNK--DLKRARKLFDEMPERNVVTWTTMMNGYLKGKQ 304
Query: 113 ----VGLAISDPFPTIRPDEVTYVGVLSACT 139
+GL IRP++VT++G L AC+
Sbjct: 305 SELSLGLFRGMLMSGIRPNQVTFLGALDACS 335
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D+ S +++G+I + AR+ F +MPER+ V WT M++GYL+ + +L LF
Sbjct: 253 MPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYLKGKQSELSLGLF 312
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M S IRP++ T + L A +Y KC
Sbjct: 313 RGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKC 372
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI-------VGLAISDPFPTI-----RPDEVTYVGVL 135
G+V A+++ KD +W +I VG+ + + RP++VTYV +L
Sbjct: 373 GEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLL 432
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 433 SACSHSG 439
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++WT ++SGY G VD A F +MP+R+ V W M++ Y R +A LF M
Sbjct: 101 RNVVTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRM 160
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ IL A M + G V+KA+ + +M +D WT M+ G+A S
Sbjct: 161 PVRDAGS-----WNILLA-MLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDE 214
Query: 124 IR 125
R
Sbjct: 215 AR 216
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V AR+ F PERD V WTA++ Y R R+A +LF S+ R + T +L
Sbjct: 54 GRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDR---SDARRNVVTWTALL 110
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ Y + G V++A+ + ++M +++ +W M+ A++
Sbjct: 111 SG--YARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVA 147
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G+V +AR+ F E+D + W +I Y EA+ L+ +MQ + RP++ T
Sbjct: 369 YAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTY 428
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVGLA--ISDP-----F 121
V +L+A + G V++ ++ M +R + +T + A + D +
Sbjct: 429 VVLLSACSH--SGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHY 486
Query: 122 PTIRPDEVT-YVGVLSACTHNGNETF 146
I+P + + +L C +GNE+
Sbjct: 487 LKIKPASGSVWSALLGGCNAHGNESI 512
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +++ ++SG + G V A + F MP D V WTA+IDG ++ R EA+ F
Sbjct: 131 MPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCF 190
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + PD T++ +++A MY +C
Sbjct: 191 RAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARC 250
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G VE A++V M ++ +W +MIVG A + + F +R PD VT+ GVL
Sbjct: 251 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 310
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 311 TACSHGG 317
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VIS+T ++ GY+ G ++ AR+ F M RD V WTAMI GY + R EA+ LF M
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
T P+ +T+ +L+ MY + G
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFP 483
Query: 92 KAQRVLRKML-RKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
A+R+ ++ RK+ TWT+MIV LA + PD +TYVGVLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 139 THNG 142
+H G
Sbjct: 544 SHAG 547
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 33/145 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++V +W ++S + G++ AR FA+MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M P +FT+ +L++ MY KC
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI 112
GD E A V +M + +W AM+
Sbjct: 213 GDAETASTVFERMPVRSVSSWNAMV 237
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 36/150 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW +VS + G++D+A F MP R V W AMI GY + +AL LF
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLF 284
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M S++ PDEFTI +L+A Y K
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 344
Query: 87 CGDVEKAQRVLRKMLRKDK--FTWTAMIVG 114
G VE A+R++ + + D ++TA++ G
Sbjct: 345 SGSVENARRIMDQSMETDLNVISFTALLEG 374
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
I++ Y G AR+ F Q+ R + + WT+MI + + EA+ LF EM + + P
Sbjct: 472 IITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEP 531
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT-- 123
D T V +L+A + G V + +R ++ + + + M+ LA + F
Sbjct: 532 DRITYVGVLSACSH--AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQ 589
Query: 124 -------IRPDEVTYVGVLSACTHNGN 143
+ PD + + +LSAC + N
Sbjct: 590 EFIRRMPVEPDAIAWGSLLSACRVHKN 616
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 24/133 (18%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G + A F +MP R W AM+ + R A +LF M +I
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVS 263
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVT 130
I Y + G KA ++ +ML + ++ PDE T
Sbjct: 264 WNAMIAG------YNQNGLDAKALKLFSRMLHES------------------SMAPDEFT 299
Query: 131 YVGVLSACTHNGN 143
VLSAC + GN
Sbjct: 300 ITSVLSACANLGN 312
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
R+A LF E+ + R + FT +L+ M+ K G + A+ V +M +D +WT M+
Sbjct: 81 LRDARRLFDEIPLA--RRNVFTWNSLLS--MFAKSGRLADARGVFAEMPERDAVSWTVMV 136
Query: 113 VGLAISDPFPT------------IRPDEVTYVGVLSACT 139
VGL + F P + T VLS+C
Sbjct: 137 VGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCA 175
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 87/191 (45%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K I+W +V Y+ ++ A + F MP RD V W +I GY V R +EAL LF
Sbjct: 177 MPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLF 236
Query: 61 PEM---QTSNIRPDEFTIVRILTAY---------------------------------MY 84
+M + + P+ T+ +L+A MY
Sbjct: 237 RQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGTLDRCLIDMY 296
Query: 85 CKCGDVEKAQRVLRKML-RKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTY 131
KCG ++KA +V K ++D ++WT +I GLA+ F ++ PD+VT+
Sbjct: 297 AKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTF 356
Query: 132 VGVLSACTHNG 142
VGVL+AC H G
Sbjct: 357 VGVLNACAHGG 367
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G+ AR F +MP + V TAM + + +AL LF +M
Sbjct: 50 TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109
Query: 70 PDEFTIVRILTA 81
PD + +L A
Sbjct: 110 PDNVALAVVLAA 121
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 88/195 (45%), Gaps = 47/195 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ +SW ++SGY GQ+D A + F M E++ V W ++I G+L+ N + +AL M
Sbjct: 388 KNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMM 447
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+PD+ T L+A MY KCG V
Sbjct: 448 GKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRV 507
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+ A++V R + D +W ++I G A++ + PDEVT++G+LSAC
Sbjct: 508 QSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSAC 567
Query: 139 THNG--NETFVINSC 151
+H G N+ I C
Sbjct: 568 SHAGLANQGLDIFKC 582
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 49/183 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--------------------------- 33
M +KD +SWT I++GYI G++D ARQ + QMP
Sbjct: 292 MPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMF 351
Query: 34 ----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89
D V W +MI GY R R EAL LF +M P + ++ Y + G
Sbjct: 352 SRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQM------PIKNSVSWNTMISGYAQAGQ 405
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPTI--------RPDEVTYVGVLSA 137
+++A + + M K+ +W ++I G + D ++ +PD+ T+ LSA
Sbjct: 406 MDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSA 465
Query: 138 CTH 140
C +
Sbjct: 466 CAN 468
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SW +++ Y+ QVD A + F +MP +D V WT +I+GY+RV + EA ++
Sbjct: 261 MPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVY 320
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+M +I + ++ + G +++A ++ ++ D W +MI G + S
Sbjct: 321 NQMPCKDITAQTALMSGLI------QNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRS 372
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 6/112 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D W +++GY +GQ + A++ F QMP +D V + +M+ GY + + AL F M
Sbjct: 141 DTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMT 200
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
N+ + L Y K GD+ A ++ K+ + +W M+ GLA
Sbjct: 201 ERNV------VSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLA 246
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+++++ ++S ++ ARQ F QM R+ V W MI GYL N EA LF
Sbjct: 43 MTHKNLVTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELF 102
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-DKFTWTAMIVGLAISD 119
M D F+ ++T Y + G +EKA+ +L + K D W AMI G A
Sbjct: 103 DVMP----ERDNFSWALMITC--YTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKG 156
Query: 120 PFPTIR--------PDEVTYVGVLSACTHNG 142
F + D V+Y +L+ T NG
Sbjct: 157 QFNDAKKVFEQMPAKDLVSYNSMLAGYTQNG 187
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++S+ +++GY G++ +A Q+F M ER+ V W M+ GY++ A LF
Sbjct: 168 MPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLF 227
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
++ P+ + V +L K G + +A+ + +M K+ +W AMI
Sbjct: 228 EKIPN----PNAVSWVTMLCG--LAKYGKMAEARELFDRMPSKNVVSWNAMIA 274
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N + +SW ++ G G++ AR+ F +MP ++ V W AMI Y++ + EA+ LF +
Sbjct: 232 NPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKK 291
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
M D + I+ Y+ + G +++A++V +M KD TA++ GL
Sbjct: 292 MP----HKDSVSWTTIINGYI--RVGKLDEARQVYNQMPCKDITAQTALMSGL 338
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VIS+T ++ GY+ G ++ AR+ F M RD V WTAMI GY + R EA+ LF M
Sbjct: 364 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 423
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
T P+ +T+ +L+ MY + G
Sbjct: 424 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 483
Query: 92 KAQRVLRKML-RKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
A+R+ ++ RK+ TWT+MIV LA + PD +TYVGVLSAC
Sbjct: 484 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 543
Query: 139 THNG 142
+H G
Sbjct: 544 SHAG 547
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 33/145 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++V +W ++S + G++ AR FA+MPERD V WT M+ G R RF EA+
Sbjct: 93 LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M P +FT+ +L++ MY KC
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKC 212
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI 112
GD E A V +M + +W AM+
Sbjct: 213 GDSETATTVFERMPVRSVSSWNAMV 237
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 36/150 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW +VS + G++D+A F MP+R V W AMI GY + +AL LF
Sbjct: 225 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 284
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M S++ PDEFTI +L+A Y K
Sbjct: 285 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 344
Query: 87 CGDVEKAQRVLRKMLRKDK--FTWTAMIVG 114
G VE A+R++ + + D ++TA++ G
Sbjct: 345 SGSVENARRIMDQSMETDLNVISFTALLEG 374
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
I++ Y G AR+ F Q+ R + + WT+MI + + EA+ LF EM + + P
Sbjct: 472 IITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEP 531
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT-- 123
D T V +L+A + G V + +R ++ + + + M+ LA + F
Sbjct: 532 DRITYVGVLSACSH--AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQ 589
Query: 124 -------IRPDEVTYVGVLSACTHNGN 143
+ PD + + +LSAC + N
Sbjct: 590 EFIRRMPVEPDAIAWGSLLSACRVHKN 616
Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 51/132 (38%), Gaps = 24/132 (18%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + A F +MP R W AM+ + R A +LF M PD
Sbjct: 205 VLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESM------PD 258
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTY 131
+ Y + G KA ++ +ML + ++ PDE T
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHES------------------SMAPDEFTI 300
Query: 132 VGVLSACTHNGN 143
VLSAC + GN
Sbjct: 301 TSVLSACANLGN 312
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
R+A LF E+ + R + FT +L+ M+ K G + A+ V +M +D +WT M+
Sbjct: 81 LRDARRLFDEIPLA--RRNVFTWNSLLS--MFAKSGRLADARGVFAEMPERDAVSWTVMV 136
Query: 113 VGLAISDPFPT------------IRPDEVTYVGVLSACT 139
VGL + F P + T VLS+C
Sbjct: 137 VGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCA 175
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 47/185 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNRFREALTLFPE 62
D S +++ Y+N ++ AR+ F MP+RD V W AMI Y++ NR EA LF
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ N+ D+F +L+A MYCKCG
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGC 247
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
+EKA V ++ +K +W MI GLA+ + PD +T+V VLSA
Sbjct: 248 LEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSA 307
Query: 138 CTHNG 142
C H+G
Sbjct: 308 CAHSG 312
Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A + F ++P++ W MI G + A+ LF EM+ +
Sbjct: 236 TTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVA 295
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T V +L+A + G VE+ + + M
Sbjct: 296 PDGITFVNVLSACAH--SGLVEEGKHYFQYM 324
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VIS+T ++ GY+ G ++ AR+ F M RD V WTAMI GY + R EA+ LF M
Sbjct: 258 NVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMI 317
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
T P+ +T+ +L+ MY + G
Sbjct: 318 TCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFP 377
Query: 92 KAQRVLRKML-RKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
A+R+ ++ RK+ TWT+MIV LA + PD +TYVGVLSAC
Sbjct: 378 WARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC 437
Query: 139 THNG 142
+H G
Sbjct: 438 SHAG 441
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 73/205 (35%), Gaps = 77/205 (37%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ G++ AR FA+MPERD V WT M+ G R RF EA+ +M P +FT+
Sbjct: 2 FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTL 61
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
+L++ MY KCGD E A V +M
Sbjct: 62 TNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPV 121
Query: 103 KDKFTWTAMI----------VGLAISDPFP------------------------------ 122
+ +W AM+ + ++ + P
Sbjct: 122 RSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRM 181
Query: 123 ----TIRPDEVTYVGVLSACTHNGN 143
++ PDE T VLSAC + GN
Sbjct: 182 LHESSMAPDEFTITSVLSACANLGN 206
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 36/150 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW +VS + G++D+A F MP+R V W AMI GY + +AL LF
Sbjct: 119 MPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLF 178
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M S++ PDEFTI +L+A Y K
Sbjct: 179 SRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAK 238
Query: 87 CGDVEKAQRVLRKMLRKDK--FTWTAMIVG 114
G VE A+R++ + + D ++TA++ G
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEG 268
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
I++ Y G AR+ F Q+ R + + WT+MI + + EA+ LF EM + + P
Sbjct: 366 IITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEP 425
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT-- 123
D T V +L+A + G V + +R ++ + + + M+ LA + F
Sbjct: 426 DRITYVGVLSACSH--AGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQ 483
Query: 124 -------IRPDEVTYVGVLSACTHNGN 143
+ PD + + +LSAC + N
Sbjct: 484 EFIRRMPVEPDAIAWGSLLSACRVHKN 510
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + +V Y G++ AR+ F + +D V W AMI GY + EA+ LF M+
Sbjct: 253 DSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAIALFHSMR 312
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ + PD+ T+V +L++ MY KCGD+E
Sbjct: 313 EAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMYAKCGDLE 372
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR------PDEVTYVGVLSAC 138
KA V KM K++ +W A+I GLA + F +R PD++T++GVLSAC
Sbjct: 373 KATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRDEKGLQPDDITFIGVLSAC 432
Query: 139 THNG 142
H G
Sbjct: 433 VHAG 436
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 68/164 (41%), Gaps = 46/164 (28%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTA-- 81
AR+ F + RD V W +M+ Y R E + M T + P+ T+ +LTA
Sbjct: 171 ARRVFDGISHRDVVSWNSMVKAYERAGMVAEVEGMLRSMVTEGAVAPNGVTLAVVLTACR 230
Query: 82 -------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY KCG++ +A+RV + KD W A
Sbjct: 231 DAGNLVLGRWVEEWVRSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNA 290
Query: 111 MIVGLA---ISDP----FPTIR-----PDEVTYVGVLSACTHNG 142
MI G A +S+ F ++R PD++T VGVLS+C G
Sbjct: 291 MITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVG 334
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++++W ++ GY G +++AR+ F MPE+D V W+++IDGY++ + EA+ LF
Sbjct: 174 MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALF 233
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +E T+V L A MY KC
Sbjct: 234 ERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKC 293
Query: 88 GDVEKAQRVLR--KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
G + +A V R + D W A+I GLA I PDE+TY+
Sbjct: 294 GAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLC 353
Query: 134 VLSACTHNG 142
+LS C H G
Sbjct: 354 LLSCCAHGG 362
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 49/144 (34%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y + + AR+ F +MP ++ V W AM+DGY
Sbjct: 153 SLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGY----------------------- 189
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISD- 119
KCGD+ A+ V M KD +W+++I G +A+ +
Sbjct: 190 --------------AKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFER 235
Query: 120 -PFPTIRPDEVTYVGVLSACTHNG 142
F +EVT V L AC H G
Sbjct: 236 MSFDGPMANEVTLVSALCACAHLG 259
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
Query: 6 VISWTDIVSGYINRGQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ T +V Y G + A F + E D ++W A+I G +EA+ LF EM
Sbjct: 280 IVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEM 339
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLA-- 116
+ I PDE T + +L+ C G + + LRK + M+ L+
Sbjct: 340 KMVGIVPDEITYLCLLSC---CAHGGLVEEAWYFFDCLRKHGMIPKVEHYACMVDALSRA 396
Query: 117 --ISDPFP-----TIRPDEVTYVGVLSACTHNGN 143
+S+ + ++P +LS C +GN
Sbjct: 397 GQVSEAYQFLCQMPVQPTSSMLGALLSGCMKHGN 430
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALT 58
N +W ++ + N + + F +M + DY+ + ++ ++ +
Sbjct: 75 NPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMA 134
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ + S D+F ++ +MY C D+ A++V +M RK+ TW AM+ G A
Sbjct: 135 VHVHIVKSGHEIDKFIQNSLI--HMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYA 190
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 77/176 (43%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + AR+ F +P RD V WTAM+ GY ++ EA+ LF MQ I+PD
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPD 398
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ T LT+ MY KCG ++ A+ V
Sbjct: 399 KMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFN 458
Query: 99 KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
+M ++ WTAMI G A I+PD+VT+ VLSACTH G
Sbjct: 459 QMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVG 514
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A+ F ++PE++ V WT +I GY + + AL L +MQ + +
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P++ T IL MYCKCG +++A+++
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKL 355
Query: 97 LRKMLRKDKFTWTAMIVGLA-------ISDPF-----PTIRPDEVTYVGVLSACT 139
+ +D TWTAM+ G A D F I+PD++T+ L++C+
Sbjct: 356 FGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCS 410
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 45/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++S Y G + AR+ F + +R+ V WTAMI+ ++ N+ EA + M+ + +PD
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T V +L A+ MY KCGD+ KAQ +
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFD 256
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACT 139
K+ K+ TWT +I G A + P+++TY +L CT
Sbjct: 257 KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +VS Y G +D AR F QM ER+ V WTAMI G + R REAL F +M+
Sbjct: 433 DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMK 492
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
I+PD+ T +L+A + G VE+ ++ R M
Sbjct: 493 KQGIKPDKVTFTSVLSACTH--VGLVEEGRKHFRSM 526
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTW 108
R+ + + + S I+P+ + +L+ MY KCG + A+RV + ++ +W
Sbjct: 108 RLRSLEQGREVHAAILKSGIQPNRYLENTLLS--MYAKCGSLTDARRVFDGIRDRNIVSW 165
Query: 109 TAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
TAMI + +PD+VT+V +L+A T
Sbjct: 166 TAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFT 208
>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
Length = 524
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 50/188 (26%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV SWT +++ G VD AR F MP R+ V W+AM+ Y+ F +A+ LF +M
Sbjct: 157 DVCSWTSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDML 216
Query: 65 TSNIRPDEFTIVRILTAY------------------------------------MYCKCG 88
S +RP+ +V +LTA MY KCG
Sbjct: 217 RSCVRPNRAAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCG 276
Query: 89 DVEKAQRVLRKMLR--KDKFTWTAMIVGLA-------ISDPF-----PTIRPDEVTYVGV 134
+E A++V R +D F +TAMI GL+ D F +RP+EVT++ V
Sbjct: 277 SLETARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTFICV 336
Query: 135 LSACTHNG 142
L+AC G
Sbjct: 337 LTACGRAG 344
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 20/156 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D + T +V Y G ++ ARQ FA P +RD +TAMI G R EA+ LF +
Sbjct: 261 DGVVATALVDMYAKCGSLETARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQ 320
Query: 63 MQTSNIRPDEFTIVRILTAYMYC-KCGDVEKAQRVLRKMLR-------KDKFTWTAMIVG 114
M +RP+E T + +LTA C + G V +A+ V R M + + ++G
Sbjct: 321 MLVEGVRPNEVTFICVLTA---CGRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLG 377
Query: 115 LA--ISDPFPTI-----RPDEVTYVGVLSACTHNGN 143
A ++D + RPD +L+AC +G+
Sbjct: 378 RAGQLADALEAVRSMPMRPDSYVLGALLNACAAHGD 413
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K++++ T +++GY G+ D A+ F Q+P RD W AMI GY + EAL L
Sbjct: 156 MPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLH 215
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M ++PD T++ +LTA MYCKC
Sbjct: 216 SQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC 275
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G + ++ R++ D +W AMI A + + PD +T++ +L
Sbjct: 276 GSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLL 335
Query: 136 SACTHNG 142
SAC H G
Sbjct: 336 SACGHAG 342
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 23/165 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VIS+T +V GY G+++ AR F MP+++ V WT MI GY+ +F EA LF
Sbjct: 94 MPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLF 153
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M NI + ++T YCK G +KA+ + ++ +D +W AMI G A +
Sbjct: 154 EQMPDKNI----VAMTAMITG--YCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 207
Query: 121 FPT------------IRPDEVTYVGVLSACT-----HNGNETFVI 148
++PD T + VL+AC+ G +T V+
Sbjct: 208 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVL 252
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G I ++D A QYF MP+R+ W AMI G +R +R EA LF
Sbjct: 32 MPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLF 91
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM N+ I Y K G++E+A+ + M +K+ +WT MI G
Sbjct: 92 EEMPRRNV------ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISG 139
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + + F Q+ D V W AMI + R + AL F EM+++ + PD
Sbjct: 268 LITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPD 327
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVL 97
T + +L+A CG K L
Sbjct: 328 GITFLSLLSA-----CGHAGKVHESL 348
Score = 38.9 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLF 60
DV+SW +++ + G D A F +M E D + + +++ + E+L F
Sbjct: 292 DVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWF 351
Query: 61 PEMQTSNI---RPDEFT-IVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAMI 112
M S RP+ F +V IL+ + G VEKA +++++M D W A++
Sbjct: 352 NSMIESYKIVPRPEHFACLVDILS-----RGGQVEKAYKIIQEMPFEADCGIWGALL 403
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K++++ T +++GY G+ D A+ F Q+P RD W AMI GY + EAL L
Sbjct: 228 MPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLH 287
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M ++PD T++ +LTA MYCKC
Sbjct: 288 SQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC 347
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G + ++ R++ D +W AMI A + + PD +T++ +L
Sbjct: 348 GSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLL 407
Query: 136 SACTHNG 142
SAC H G
Sbjct: 408 SACGHAG 414
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 23/165 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VIS+T +V GY G+++ AR F MP+++ V WT MI GY+ +F EA LF
Sbjct: 166 MPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLF 225
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M NI + ++T YCK G +KA+ + ++ +D +W AMI G A +
Sbjct: 226 EQMPDKNI----VAMTAMITG--YCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGS 279
Query: 121 FPT------------IRPDEVTYVGVLSACT-----HNGNETFVI 148
++PD T + VL+AC+ G +T V+
Sbjct: 280 GEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVL 324
Score = 82.8 bits (203), Expect = 4e-14, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G I ++D A QYF MP+R+ W AMI G +R +R EA LF
Sbjct: 104 MPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLF 163
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
EM N+ I Y K G++E+A+ + M +K+ +WT MI G
Sbjct: 164 EEMPRRNV------ISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISG 211
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 25/138 (18%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV ++ + G + ARQ F +MP RD V W ++I GY + F E+ LF M
Sbjct: 45 QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104
Query: 64 QTSNIRPDEFTIV------RILTAYMY-------------------CKCGDVEKAQRVLR 98
T N+ I RI A+ Y + VE+A R+
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164
Query: 99 KMLRKDKFTWTAMIVGLA 116
+M R++ ++TAM+ G A
Sbjct: 165 EMPRRNVISYTAMVDGYA 182
Score = 43.9 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + + F Q+ D V W AMI + R + AL F EM+++ + PD
Sbjct: 340 LITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPD 399
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVL 97
T + +L+A CG K L
Sbjct: 400 GITFLSLLSA-----CGHAGKVHESL 420
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLF 60
DV+SW +++ + G D A F +M E D + + +++ + E+L F
Sbjct: 364 DVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWF 423
Query: 61 PEMQTSN---IRPDEFT-IVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAMI 112
M S RP+ F +V IL+ + G VEKA +++++M D W A++
Sbjct: 424 NSMIXSYKIVXRPEHFACLVDILS-----RGGQVEKAYKIIQEMPFEADCGIWGALL 475
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 84/185 (45%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV++WT +VSGY G V+ AR+ F MPE++ V WT++I GY R + +AL LF +M
Sbjct: 247 RDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKM 306
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
NIRPD+FT L A MY KCG +
Sbjct: 307 MALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCL 366
Query: 91 EKAQRVLRKMLRK-DKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
E + V M K D W +I LA ++PD +T + +L+A
Sbjct: 367 EVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNA 426
Query: 138 CTHNG 142
C+H+G
Sbjct: 427 CSHSG 431
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++SGY G++ AR+ F +MPE+D V W M+ Y + +AL +
Sbjct: 112 MSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFY 171
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
E++ I +E++ +L + Y KC
Sbjct: 172 RELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKC 231
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
++ A+R+ +M+ +D WT M+ G A
Sbjct: 232 SEMGDARRLFDEMIIRDVLAWTTMVSGYA 260
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+ ++ Y G +++ R F M ++ D VLW +I + R +EA+ +F +M +
Sbjct: 354 SSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGM 413
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMIVGLAISDPFPT 123
+PD T++ +L A + G V++ R+ + ++ + +I L + F T
Sbjct: 414 KPDRITLIVLLNACSH--SGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDT 471
Query: 124 I---------RPDEVTYVGVLSACTHNGNETF 146
+ +P++ + +L C +GN F
Sbjct: 472 LMNQLEKMPCKPNDEIWNALLGVCRMHGNIEF 503
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 67/193 (34%)
Query: 1 MKNKDVISWTDIVSGYINRG-----------------------------------QVDIA 25
M KDV+SW +V Y G +++++
Sbjct: 143 MPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELS 202
Query: 26 RQYFAQMPERDY----VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+Q Q+ + V+ ++++D Y + + +A LF EM I+R + A
Sbjct: 203 KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEM-----------IIRDVLA 251
Query: 82 YM-----YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TI 124
+ Y + GDVE A+ + M K+ WT++I G A D I
Sbjct: 252 WTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNI 311
Query: 125 RPDEVTYVGVLSA 137
RPD+ T+ L A
Sbjct: 312 RPDQFTFSSCLCA 324
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
L +I+ Y + + A +F EM T N+ ++ +L+ Y K G ++ A+++
Sbjct: 88 LANHLINMYSKCGDYPSAYKVFDEMSTRNL----YSWNGMLSGY--AKLGKIKPARKLFD 141
Query: 99 KMLRKDKFTWTAMIVGLAIS----DPFPTIRP--------DEVTYVGVLSAC 138
KM KD +W M++ A S D R +E ++ G+L+ C
Sbjct: 142 KMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNIC 193
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+++I T ++ Y+ +D AR+ F +M +RD V W+ MI GY + R E+L LF M
Sbjct: 249 QNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ ++ +P+E T+V +L+A MY KCG V
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+A+ V +M K TW +M+ GLA++ ++P+E+T+V +L+AC
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428
Query: 139 THNG 142
TH G
Sbjct: 429 THAG 432
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 44/190 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++GY G V AR+ F M R W +MI Y ++EAL LF
Sbjct: 146 MPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
M + RP+ TI + + MY KC
Sbjct: 206 RRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQ 265
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
+++A+R +M ++D W+ MI G A + P ++ +P+EVT VGVLS
Sbjct: 266 AIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLS 325
Query: 137 ACTHNGNETF 146
AC G++
Sbjct: 326 ACAQLGSDEL 335
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRP 70
++ Y G V AR F +M + + W +M+ G L +N F ++A+TL+ EM +++P
Sbjct: 358 LIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRG-LALNGFAQDAITLYKEMTEEDVQP 416
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+E T V +LTA + G V++ ++M
Sbjct: 417 NEITFVALLTACTH--AGLVDQGMSFFKEM 444
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K V+ T +++GY+ G+V++A + F +M ++ V W +MI GY+ R + L +F M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
S +RP+ ++ +L MYCKCGD+
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDL 346
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSAC 138
+ A ++ +M RKD TW AMI G L + D T++PD +T+V V+ AC
Sbjct: 347 DSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406
Query: 139 THNG 142
H G
Sbjct: 407 NHAG 410
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ SW ++SG+ GQ+ A F+ MPE++ V W+AMI GY+ A L+
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY 221
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
+ ++ + +LT YM K G VE A+R+ ++M K+ TW +MI G +
Sbjct: 222 KNVGMKSVVVE----TAMLTGYM--KFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCR 275
Query: 119 -----DPFPT-----IRPDEVTYVGVLSACT 139
F T +RP+ ++ VL C+
Sbjct: 276 AEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD + T ++S Y G +D A + F +MP +D + W AMI GY + R+AL LF +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDK 386
Query: 63 MQTSNIRPDEFTIVRILTA 81
M+ ++PD T V ++ A
Sbjct: 387 MRNGTMKPDWITFVAVILA 405
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFPEM 63
DV+S ++ ++ ++ AR F +M R V W M+ GY +V + +EA LF ++
Sbjct: 72 DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
PD + +L Y+ + V+ A KM KD +W +I G A
Sbjct: 132 P----EPDSVSYNIMLVCYL--RSYGVKAALAFFNKMPVKDIASWNTLISGFA 178
>gi|255581962|ref|XP_002531779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528572|gb|EEF30593.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 518
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++ T +++GY+ G + +A + F +M + V W AMI G++ +R + + LF
Sbjct: 238 MPVKNVVACTAMITGYMKLGFIKLAEKLFKEMSTDNVVTWNAMISGFIENSRAEDGVKLF 297
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M IRP+ T+ +L MYCKC
Sbjct: 298 RTMVGFGIRPNPSTLSSLLLGCSELSALQLGRQVHQLVCKSPLASDMTAGTSLVSMYCKC 357
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
GD+E A ++ ++ RKD TW AMI G A+ I PD +T+V VL
Sbjct: 358 GDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMKKEGITPDWITFVAVL 417
Query: 136 SACTHNG 142
AC H G
Sbjct: 418 LACNHAG 424
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
NKD SW ++SG+ G++ A + F QMP ++ V W AMI GY+ A LF
Sbjct: 178 NKDPASWNTLISGFSQNGKMAKAHKLFLQMPYKNVVTWNAMISGYIACGDLTSAWKLFKT 237
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
M N+ ++T YM K G ++ A+++ ++M + TW AMI G
Sbjct: 238 MPVKNV----VACTAMITGYM--KLGFIKLAEKLFKEMSTDNVVTWNAMISGF 284
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ + T +VS Y G ++ A + F ++P +D V W AMI GY +AL LF EM+
Sbjct: 343 DMTAGTSLVSMYCKCGDLEDAWKLFLELPRKDVVTWNAMISGYALHGAGEKALRLFDEMK 402
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDV 90
I PD T V +L A + D+
Sbjct: 403 KEGITPDWITFVAVLLACNHAGFADL 428
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D IS+ +++ Y++ ++ A+ +F +P +D W +I G+ + + +A LF +M
Sbjct: 149 DTISYNTMLACYVHNSDMEKAQAFFDLIPNKDPASWNTLISGFSQNGKMAKAHKLFLQMP 208
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N+ T +++ Y+ CGD+ A ++ + M K+ TAMI G
Sbjct: 209 YKNV----VTWNAMISGYI--ACGDLTSAWKLFKTMPVKNVVACTAMITG 252
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLF 60
K DVI +++ +I G +D A + F M + V W +++ GY R + + A LF
Sbjct: 83 KVNDVILSNQVITSFIRSGDLDSALELFNNMTIKTTVTWNSILAGYSRKRGKMKNARELF 142
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
++ PD + +L Y++ D+EKAQ + KD +W +I G +
Sbjct: 143 DKIP----EPDTISYNTMLACYVH--NSDMEKAQAFFDLIPNKDPASWNTLISGFS 192
>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ISW ++SGY+N +++ A F++MPER+ + WT MI G + E L LF
Sbjct: 352 MPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLF 411
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M++ + P ++ +TA MY +C
Sbjct: 412 NQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRC 471
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A+ V M D +W AMI LA I PD +T++ +L
Sbjct: 472 GVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTIL 531
Query: 136 SACTHNG 142
+AC H G
Sbjct: 532 TACNHAG 538
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+++ T ++S Y + G V +A+Q F P RD V + AMI Y N AL LF +
Sbjct: 70 DIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQ 129
Query: 63 MQTSNIRPDEFTIVRILTA 81
M+ PD FT +L+A
Sbjct: 130 MKRYGFLPDPFTFSSVLSA 148
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SWT +++GY+ + AR+ + V W AMI GY+R + EA F M +
Sbjct: 219 SWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMG 278
Query: 68 IRPDEFTIVRILTAYMYC--KCGDVEKAQRVLRKMLR 102
I+ DE+T +++A C K G ++V +LR
Sbjct: 279 IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILR 315
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 49/127 (38%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
AR+ F +MP RD + W A++ GY+ R EA ++F
Sbjct: 345 ARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFS----------------------- 381
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYV 132
+M ++ TWT MI GLA + + P + +
Sbjct: 382 --------------EMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFA 427
Query: 133 GVLSACT 139
G ++AC+
Sbjct: 428 GAITACS 434
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +++ ++SG + G V A + F MP D V WTA+IDG ++ R EA+ F
Sbjct: 165 MPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCF 224
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + PD T++ +++A MY +C
Sbjct: 225 RAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARC 284
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G VE A++V M ++ +W +MIVG A + + F +R PD VT+ GVL
Sbjct: 285 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 344
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 345 TACSHGG 351
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 242 MPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLF 301
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ +++ D +V IL A M+CKC
Sbjct: 302 TQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKC 361
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G + +A V +++ KD +W +I G A+ D F ++ PD VT + V
Sbjct: 362 GCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINV 421
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 422 LSACTHMG 429
Score = 79.7 bits (195), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+V+ AR+ F +M E+D V W ++DGY + EA LF
Sbjct: 180 MPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M P+ + YCK GD+E A+ + KM K+ TWT M+ A +
Sbjct: 240 QCM------PERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGL 293
Query: 121 F------------PTIRPDEVTYVGVLSACTHNGN 143
++ D V +L+AC +G+
Sbjct: 294 VEEAGKLFTQMKEASVELDVAAVVSILAACAESGS 328
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G A + F +MP RD V W + + +R A +F EM + D
Sbjct: 160 LIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEM----LEKD 215
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----------AISDPF 121
+ +L Y K GDVE+A ++ + M ++ +W+ ++ G I D
Sbjct: 216 TVSWNTLLDGYT--KAGDVEEAFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKM 273
Query: 122 PTIRPDEVTYVGVLSACTHNG 142
PT + VT+ ++SAC NG
Sbjct: 274 PT--KNLVTWTIMVSACAQNG 292
Score = 39.7 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 20/143 (13%)
Query: 15 GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74
G INR + ++ E+D V W +I G+ +AL F +M+ PD T
Sbjct: 362 GCINRADY----VFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVT 417
Query: 75 IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI----VGLAISDPFPTIR 125
++ +L+A + G VE+ +R M R + MI G I + I+
Sbjct: 418 MINVLSACTH--MGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIK 475
Query: 126 -----PDEVTYVGVLSACTHNGN 143
P+EV + +LSAC + N
Sbjct: 476 SMPWDPNEVIWGSLLSACRLHKN 498
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+SWT +++ Y N G +D A ++F QMP ++ V W ++I +++ + EA+ LF
Sbjct: 296 MLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLF 355
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M S + ++ T+V IL++ MY KC
Sbjct: 356 YRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKC 415
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G ++ A V M K+ +W +I LA+ + F ++ PDE+T+ G+L
Sbjct: 416 GALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLL 475
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 476 SACSHSG 482
Score = 73.9 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 33/138 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I++ Y+ G + AR+ F + ER V W +MI+GY ++ R EA+ +F EMQ + PD
Sbjct: 175 ILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPD 234
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
FT+V +L+ MY KCG+++ A+ V
Sbjct: 235 VFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFD 294
Query: 99 KMLRKDKFTWTAMIVGLA 116
+ML KD +WT MI A
Sbjct: 295 QMLDKDVVSWTCMINAYA 312
Score = 52.4 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRP 70
I+ Y G + A F MPE++ V W +I G L ++ + +EA+ +F +MQ S + P
Sbjct: 408 IIDMYAKCGALQTAMDVFFGMPEKNAVSWNVII-GALALHGYGKEAIEMFEKMQASGVCP 466
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--------VGLAI 117
DE T +L+A + G V+ Q M + D + M+ +G AI
Sbjct: 467 DEITFTGLLSACSH--SGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAI 524
Query: 118 S--DPFPTIRPDEVTYVGVLSACTHNGN 143
S P ++PD V + +L AC GN
Sbjct: 525 SLIKKMP-VKPDVVVWSALLGACRTYGN 551
>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 576
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDVISW +VSGY G++D A F QMPER++ W MI GY+ EA LF M
Sbjct: 199 KDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCGSIVEARELFDAM 258
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD---- 119
R + +++ ++ Y K GDV A+ + +M KD ++ AMI A S
Sbjct: 259 P----RRNSVSLITMIAG--YSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSKPKE 312
Query: 120 ----------PFPTIRPDEVTYVGVLSACTHNGN 143
P ++ PD++T V+SAC+ GN
Sbjct: 313 ALDLFNVMLKPDSSLHPDKMTLASVISACSQLGN 346
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +S +++GY G V AR+ F QM ++D + + AMI Y + ++ +EAL LF
Sbjct: 258 MPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSKPKEALDLF 317
Query: 61 PEMQT--SNIRPDEFTIVRILTAY---------------------------------MYC 85
M S++ PD+ T+ +++A +Y
Sbjct: 318 NVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLATALIDLYA 377
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPF--------PTIRPDEVTYVG 133
KCG ++KA + + ++D ++AMI G I SD I P+ VTY G
Sbjct: 378 KCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTG 437
Query: 134 VLSACTHNG 142
+L+A H G
Sbjct: 438 ILTAYNHAG 446
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V AR+ F +MP+++ V W +++ GY++ E F E+
Sbjct: 143 TALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGGNLDEGQRFFDEI------ 196
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P + I Y K G +++A + ++M ++ +W MI G
Sbjct: 197 PLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITG 241
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DVI T + S Y G ++ ARQ F +MP+RD V W A+I GY + + EAL LF EMQ
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213
Query: 65 TSNIRPDEFTIVRILT---------------------------------AYMYCKCGDVE 91
+ I+P+ T+V ++ MY KCG+V
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
A ++ +M +D +W A+I G +++ I+P+ +T V VL AC
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333
Query: 140 H 140
H
Sbjct: 334 H 334
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 46/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ DV+ +V+ Y G V+ A + F +MP+++ V W A+I GY + EAL LF
Sbjct: 354 ESNDVVG-NALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFI 412
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
EMQ I+PD F IV +L A +Y KCG
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCG 472
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIRP-----DEVTYVGVLS 136
+V AQ++ +M +D +WT MI+ I F ++ D + + +L+
Sbjct: 473 NVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILT 532
Query: 137 ACTHNG 142
AC+H G
Sbjct: 533 ACSHAG 538
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 74/181 (40%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ +V+ Y G V+ A + F +MP RD W A+I GY ++ EAL F MQ
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
I+P+ T+V +L A MY KCG+V
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN 374
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACT 139
A ++ +M +K+ W A+I G L I I+PD V VL AC
Sbjct: 375 SAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACA 434
Query: 140 H 140
H
Sbjct: 435 H 435
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 45/148 (30%)
Query: 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA---------------- 81
V+W I GY++ + +AL L+ +MQ + I PD+ + ++ A
Sbjct: 86 VVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHED 145
Query: 82 -----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPT 123
MY KCG +E A++V +M ++D +W A+I G + + P+
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEA 205
Query: 124 -----------IRPDEVTYVGVLSACTH 140
I+P+ T V V+ C H
Sbjct: 206 LALFSEMQVNGIKPNSSTLVSVMPVCAH 233
>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++++SW+ +V GY G +D+AR F + P ++ VLWT +I GY REA L+ +M
Sbjct: 248 RNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKM 307
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + +RPD+ ++ IL A MY KCG +
Sbjct: 308 EEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCL 367
Query: 91 EKAQRVLRKML-RKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
+ A V M+ +KD +W +MI G A+ PD T+VG+L A
Sbjct: 368 DAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCA 427
Query: 138 CTHNG 142
CTH G
Sbjct: 428 CTHAG 432
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV++W ++ G + G++ A + F +MP+RD V W M+DGY + A LF
Sbjct: 183 MEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELF 242
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
M NI + Y K GD++ A+ + + K+ WT +I G A
Sbjct: 243 ERMPWRNIVSWSTMVCG------YSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGL 296
Query: 120 -----------PFPTIRPDEVTYVGVLSACTHNG 142
+RPD+ + +L+AC +G
Sbjct: 297 AREATELYGKMEEAGMRPDDGFLLSILAACAESG 330
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 5 DVISWTDIVSGYINRGQ--VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+ ++ Y G +D A F M ERD V W +MI G +R + A LF E
Sbjct: 154 DIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDE 213
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M PD + Y K G+++ A + +M ++ +W+ M+ G
Sbjct: 214 M------PDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCG 259
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 86/187 (45%), Gaps = 47/187 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N +VI T IV Y G +++AR+ F +MPER+ V W MI+ Y + R+ EAL LF
Sbjct: 247 NSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFY 306
Query: 63 MQTSNIRPDEFTIVRILT---------------AY------------------MYCKCGD 89
M + PD+ T + +L+ AY MY K G+
Sbjct: 307 MLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALLDMYAKNGE 366
Query: 90 VEKAQRVLRKML-RKDKFTWTAMIVGLAISDPF-------------PTIRPDEVTYVGVL 135
+ AQ++ L +KD WT+MI LAI ++ PD +TY+GVL
Sbjct: 367 LGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIGVL 426
Query: 136 SACTHNG 142
AC+H G
Sbjct: 427 FACSHVG 433
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 52/182 (28%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +++ Y+ ++ + F ++P+ + V WT +I+GY+ ++ REAL +F EM +
Sbjct: 146 TGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFKEMGRWGVE 205
Query: 70 PDEFTIVRILTA----------------------------------------YMYCKCGD 89
+E T+V L A MY KCG
Sbjct: 206 ANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIVEMYAKCGW 265
Query: 90 VEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVTYVGVLSA 137
+ A+ + KM ++ W MI +GL PD+ T++ VLS
Sbjct: 266 LNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFFYMLANGFCPDKATFLSVLSV 325
Query: 138 CT 139
C
Sbjct: 326 CA 327
>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 725
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ T +VSGY G++D AR F Q +D V WT MI Y + +EAL +F
Sbjct: 276 MSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVF 335
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM S I+PD T++ +++A MY KC
Sbjct: 336 EEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKC 395
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVL 135
G ++ A+ V KM ++ +W++MI A+ SD + P+EVT+VGVL
Sbjct: 396 GGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVL 455
Query: 136 SACTHNG 142
C+H+G
Sbjct: 456 YGCSHSG 462
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 33/138 (23%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G+++ AR F +M +RD V W MI+ Y R EA LF EM+ SN+
Sbjct: 153 TGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVM 212
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PDE + I++A MY G ++ A
Sbjct: 213 PDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEF 272
Query: 97 LRKMLRKDKFTWTAMIVG 114
RKM ++ F TAM+ G
Sbjct: 273 FRKMSVRNLFVSTAMVSG 290
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 22/148 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G +D AR F +MP R+ V W++MI+ + ++L+LF +M+ N+ P+
Sbjct: 388 LINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPN 447
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-----------------VG 114
E T V +L Y G VE+ +++ M D++ T I
Sbjct: 448 EVTFVGVL--YGCSHSGLVEEGKKIFASM--TDEYNITPKIEHYGCMVDLFGRANLLREA 503
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNG 142
L + + P + P+ V + ++SAC +G
Sbjct: 504 LEVIESMP-MAPNVVIWGSLMSACRVHG 530
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 71/187 (37%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREA 56
M +DV++W ++ Y G +D A + F +M + D ++ ++ R R
Sbjct: 175 MSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 234
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYM-----------------------------YCKC 87
++ + +++R D + ++T Y Y K
Sbjct: 235 RAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKA 294
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVL 135
G ++ A+ + + KD WT MI A SD I+PD VT + V+
Sbjct: 295 GRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVI 354
Query: 136 SACTHNG 142
SAC + G
Sbjct: 355 SACVNLG 361
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-----VGLAISDPF--------PTIRPDEV 129
MY CG + A+ V +M ++D TW MI GL + + F + PDE+
Sbjct: 158 MYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGL-LDEAFKLFEEMKDSNVMPDEM 216
Query: 130 TYVGVLSACTHNGN 143
++SAC GN
Sbjct: 217 ILCNIVSACGRTGN 230
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++W +++G + G+++ A F +MPE++ V WT +IDGY+R N++ E L+LF
Sbjct: 18 MPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRNNKYSEGLSLF 77
Query: 61 PEMQT-SNIRPDEFTIVRILTAY----------------------------------MYC 85
M I+P E TI+ IL A Y
Sbjct: 78 RRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRGFNAFDIRVANSIIDCYS 137
Query: 86 KCGDVEKAQRVLR--KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTY 131
KCG + A + + RK+ +WT++I G A+ + ++P+ VT+
Sbjct: 138 KCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEKAGLKPNRVTF 197
Query: 132 VGVLSACTHNG 142
+ VL+AC+H G
Sbjct: 198 LSVLNACSHGG 208
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+ I+ Y G + A ++F + ++ V WT++I G+ ++EA+ F
Sbjct: 125 DIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFER 184
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRK 103
M+ + ++P+ T + +L A C G V++ R KM+ +
Sbjct: 185 MEKAGLKPNRVTFLSVLNA---CSHGGLVDEGLRCFYKMVNE 223
>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
Length = 445
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW ++SGY +++ AR+ F +MP+RD W+AM+ GY ++ EAL LF
Sbjct: 204 MPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLF 263
Query: 61 PEMQTSN-IRPDEFTIV---------------RILTAY------------------MYCK 86
EM T + + P+E +V R L +Y MY K
Sbjct: 264 MEMVTGDKMIPNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGK 323
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG + A V M ++ +W +MI GLA++ F P+ +T++ +
Sbjct: 324 CGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAITFIAL 383
Query: 135 LSACTHNG 142
L+ C+H+G
Sbjct: 384 LTGCSHSG 391
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW +++GY+ G D A + F QMP D V W MI GY +F +A+ +F
Sbjct: 235 MPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMF 294
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M RP T+V +L+A MY KC
Sbjct: 295 FMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKC 354
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G +E A V R + +K WTA+IVGL I ++P+ + ++GVL
Sbjct: 355 GCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVL 414
Query: 136 SACTHNG 142
+AC H G
Sbjct: 415 NACNHAG 421
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KDV+ W ++ GY G++DIA Q F +MPERD WT ++DG + + A LF
Sbjct: 173 MIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLF 232
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M N+ + ++ YM K GD + A + +M D TW MI G ++
Sbjct: 233 DQMPCRNL----VSWNAMINGYM--KSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQ 286
Query: 121 FPTI------------RPDEVTYVGVLSACT 139
F RP T V VLSA +
Sbjct: 287 FMDAVKMFFMMLKLGSRPSHATLVSVLSAVS 317
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV +V+ Y G++D AR+ F M ++D VLW ++IDGY R AL LF E
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M D F+ ++ KCG VE A+++ +M ++ +W AMI G S F
Sbjct: 204 MPER----DAFSWTVLVDG--LSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFD 257
Query: 123 T 123
+
Sbjct: 258 S 258
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G ++ AR+ F+ +P RD V WTAM+ GY ++ EA+ LF MQ I+PD
Sbjct: 290 LITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPD 349
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ T +LT+ MY KCG ++ A V
Sbjct: 350 KMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFN 409
Query: 99 KMLRKDKFTWTAMIVG-----------LAISDPFPT--IRPDEVTYVGVLSACTHNG 142
+M ++ WTA+I G L D I+PD+VT+ VLSACTH G
Sbjct: 410 QMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVG 466
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + AR F ++PE++ V WT +I GY + + AL L MQ + +
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P++ T IL MYCKCG +E+A+++
Sbjct: 247 PNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKL 306
Query: 97 LRKMLRKDKFTWTAMIVG---LAISDPF---------PTIRPDEVTYVGVLSACT 139
+ +D TWTAM+ G L D I+PD++T+ VL++C+
Sbjct: 307 FSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCS 361
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 45/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++S Y G + AR+ F + +R+ V WTAMI+ ++ N+ EA + M+ + +PD
Sbjct: 88 LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T V +L A+ MY KCGD+ KA+ +
Sbjct: 148 KVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFD 207
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACT 139
++ K+ TWT +I G A + P+++T+ +L CT
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT 260
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL-RVNRFREALTLFP 61
N DV + +VS Y G +D A F QM ER+ V WTA+I G + R REAL F
Sbjct: 382 NLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFD 441
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+M+ I+PD+ T +L+A + G VE+ ++ R M
Sbjct: 442 QMKKQGIKPDKVTFTSVLSACTH--VGLVEEGRKHFRSM 478
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTW 108
R+ + + + S I+P+ + +L+ MY KCG + A+RV + ++ +W
Sbjct: 59 RLRSLEQGREVHAAILKSGIQPNRYLENTLLS--MYAKCGSLTDARRVFDSIRDRNIVSW 116
Query: 109 TAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTH 140
TAMI + +PD+VT+V +L+A T+
Sbjct: 117 TAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTN 160
>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 891
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 85/152 (55%), Gaps = 19/152 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +DV+SWT +V+G G+VD AR+ F +MP R+ V W AMI GY + RF EAL LF
Sbjct: 196 MRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLF 255
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
M ++ P T+V T ++ + GD+ +A+++ M +K+ TWTAM+ G
Sbjct: 256 ERMPERDM-PSWNTMV---TGFI--QNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGL 309
Query: 115 ----LAISDPFPT---IRPDEVTYVGVLSACT 139
L + + ++P T+V VL AC+
Sbjct: 310 SEEALKLFNKMQANDGLKPTTGTFVTVLGACS 341
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K VI WT +VSGYI +++ A + F +MP R+ V W MIDGY R R +EAL LF M
Sbjct: 106 KSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRM 165
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
N+ + ++TA + CG ++ A+R+ +M +D +WT M+ GL+
Sbjct: 166 PERNV----VSWNTVMTALAH--CGRIDDAERLFNEMRERDVVSWTTMVAGLS 212
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW +V+G+I G ++ A Q F MP+++ + WTAM+ GY++ EAL LF
Sbjct: 258 MPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLF 317
Query: 61 PEMQTSN-IRPDEFTIVRILTA---------------------------------YMYCK 86
+MQ ++ ++P T V +L A MY K
Sbjct: 318 NKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSK 377
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYV 132
CGD A+++ L D W MI A + F ++ ++VTYV
Sbjct: 378 CGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYV 437
Query: 133 GVLSACTHNG 142
G+L+AC+H G
Sbjct: 438 GLLTACSHAG 447
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+S G+V+ AR+ F +M +RD LWT MI GY++ EA LF RPD
Sbjct: 52 ISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFD-------RPDA 104
Query: 73 FTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V + TA + Y K +E+A+R+ +M ++ +W MI G A
Sbjct: 105 QKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYA 150
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW ++ GY G+ A F +MPER+ V W ++ R +A LF
Sbjct: 134 MPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLF 193
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM+ ++ T+V L+ K G V+ A+ V KM ++ +W AMI G A +
Sbjct: 194 NEMRERDV-VSWTTMVAGLS-----KNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGR 247
Query: 121 F 121
F
Sbjct: 248 F 248
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+++I T ++ Y+ +D AR+ F +M +RD V W+ MI GY + R E+L LF M
Sbjct: 249 QNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERM 308
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ ++ +P+E T+V +L+A MY KCG V
Sbjct: 309 KATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHV 368
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
+A+ V +M K TW +M+ GLA++ ++P+E+T+V +L+AC
Sbjct: 369 GRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428
Query: 139 THNG 142
TH G
Sbjct: 429 THAG 432
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 44/190 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD I +++GY G V AR+ F M R W +MI Y ++EAL LF
Sbjct: 146 MPVKDPIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205
Query: 61 PEMQTSNIRPDEFTIVRILT--------------------------------AYMYCKCG 88
M + RP+ TI + + MY KC
Sbjct: 206 RRMLSEGARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCR 265
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTI-----------RPDEVTYVGVLS 136
+++A+R +M ++D W+ MI G A + P ++ +P+EVT VGVLS
Sbjct: 266 AIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLS 325
Query: 137 ACTHNGNETF 146
AC G++
Sbjct: 326 ACAQLGSDEL 335
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSNIRP 70
++ Y G V AR F +M + + W +M+ G L +N F ++A+TL+ EM +++P
Sbjct: 358 LIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRG-LALNGFAQDAITLYKEMTEEDVQP 416
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+E T V +LTA + G V++ ++M
Sbjct: 417 NEITFVALLTACTH--AGLVDQGMSFFKEM 444
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G++ AR+ F ++ ++D V W +MI GY ++ EA+ LF EM + +P+
Sbjct: 168 LITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPN 227
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
E ++V +L A +MY KCGD+ A+R+
Sbjct: 228 EMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFD 287
Query: 99 KMLRKDKFTWTAMIVGLA---ISDP----FPTIR-----PDEVTYVGVLSACTHNG 142
M +KDK TW AMI G A +S+ F +R PD++T +G+LSAC G
Sbjct: 288 SMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIG 343
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 79/170 (46%), Gaps = 47/170 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + AR+ F M ++D V W AMI GY + EA+ LF +M+ S+ PD+ T++ IL
Sbjct: 277 GDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGIL 336
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+A MY KCG ++ A RV M +K++
Sbjct: 337 SACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEV 396
Query: 107 TWTAMIVGLA--------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
+W AMI LA + + T+ P+++T+VGVLSAC H G
Sbjct: 397 SWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446
Score = 48.9 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
DV T +V Y G +D A + F MP+++ V W AMI + +EAL LF M
Sbjct: 363 DVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMM 422
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ + P++ T V +L+A ++ G V++ +R+ M
Sbjct: 423 NEGGTVSPNDITFVGVLSACVH--AGLVDEGRRLFHMM 458
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVT 130
MY +CG + A++V ++ +KD +W +MI VGL +P+E++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230
Query: 131 YVGVLSACTHNGN-------ETFVINS 150
V VL AC G+ E FV+ +
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVEN 257
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G++ AR+ F ++ ++D V W +MI GY ++ EA+ LF EM + +P+
Sbjct: 168 LITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPN 227
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
E ++V +L A +MY KCGD+ A+R+
Sbjct: 228 EMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFD 287
Query: 99 KMLRKDKFTWTAMIVGLA---ISDP----FPTIR-----PDEVTYVGVLSACTHNG 142
M +KDK TW AMI G A +S+ F +R PD++T +G+LSAC G
Sbjct: 288 SMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIG 343
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 47/170 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + AR+ F M ++D V W AMI GY + EA+ LF +M+ S+ PD+ T++ IL
Sbjct: 277 GDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGIL 336
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
+A MY KCG ++ A RV M K++
Sbjct: 337 SACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEV 396
Query: 107 TWTAMIVGLA--------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
+W AMI LA + + T+ P+++T+VGVLSAC H G
Sbjct: 397 SWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
DV T +V Y G +D A + F MP ++ V W AMI + +EAL LF M
Sbjct: 363 DVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMM 422
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ + P++ T V +L+A ++ G V++ +R+ M
Sbjct: 423 NEGGTVSPNDITFVGVLSACVH--AGLVDEGRRLFHMM 458
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 19/87 (21%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVT 130
MY +CG + A++V ++ +KD +W +MI VGL +P+E++
Sbjct: 171 MYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMS 230
Query: 131 YVGVLSACTHNGN-------ETFVINS 150
V VL AC G+ E FV+ +
Sbjct: 231 LVSVLGACGELGDLKLGTWVEEFVVEN 257
>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
Length = 845
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK +SW +++G++ G ++ A + F+ MP+ D V W MI ++ + F+EA+ LF
Sbjct: 402 MLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELF 461
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ+ I D+ T+V + +A M+ +C
Sbjct: 462 RVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARC 521
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
GD + A +V KM+++D WTA I +A+ I+PD V +V +L
Sbjct: 522 GDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALL 581
Query: 136 SACTHNG 142
+A +H G
Sbjct: 582 TALSHGG 588
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 47/182 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ ++ Y G++D R+ F +M ER+ V WT++I GY + ++EA++LF EM
Sbjct: 172 RDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM 231
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
IRP+ T+V +++A MY KCG +
Sbjct: 232 VEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291
Query: 91 EKAQRVLRKMLRKDKFTWTAMIV-----GLAISDPFPTI--------RPDEVTYVGVLSA 137
+KA+++ + + K+ + ++ GLA + + RPD +T + +SA
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLA-REVLAVLGEMLKHGPRPDRITMLSAVSA 350
Query: 138 CT 139
C+
Sbjct: 351 CS 352
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 33/137 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y+ G +D AR+ F + +++ VL+ ++ Y+R RE L + EM RPD
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPD 340
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
T++ ++A MY KCG E A RV
Sbjct: 341 RITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFD 400
Query: 99 KMLRKDKFTWTAMIVGL 115
+ML K + +W ++I G
Sbjct: 401 RMLNKTRVSWNSLIAGF 417
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V + G A Q F +M +RD WTA I A+ LF EM I+
Sbjct: 512 TALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIK 571
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA--ISDP 120
PD V +LTA + G VE+ + R M + + M+ +G A +S+
Sbjct: 572 PDGVVFVALLTALSH--GGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEA 629
Query: 121 FPTI-----RPDEVTYVGVLSAC 138
I P++V + +L+AC
Sbjct: 630 LSLINSMQMEPNDVIWGSLLAAC 652
>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61800 [Vitis vinifera]
Length = 576
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPE 62
KDV+S+ ++ G+I G D AR+ F +MP RD V W ++ GY + +A+ LF
Sbjct: 193 KDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNR 252
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M S +RPD +V L+A +Y KCG
Sbjct: 253 MLISTVRPDNIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGC 312
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
+E A+ + K+ FTW A++VGL + I+PD V+++G+L
Sbjct: 313 IETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVG 372
Query: 138 CTHNG 142
C H G
Sbjct: 373 CGHAG 377
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G ++ AR+ F P+++ W A++ G R +L F M + I+
Sbjct: 301 TGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIK 360
Query: 70 PDEFTIVRILT----AYMYCKCGDVEKAQRVLRKMLRKDK-FTWTAMIVGLA--ISDPFP 122
PD + + IL A + C+ + + V+ ++ R+ K + A ++G A I +
Sbjct: 361 PDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAME 420
Query: 123 TIR-----PDEVTYVGVLSACTHNGN 143
I D + GVL C +GN
Sbjct: 421 MIERMPMGGDVFVWGGVLGGCRIHGN 446
>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Brachypodium distachyon]
Length = 618
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW +++G+I ++ A++ F +MP R+ V WT M++GYL+ + AL LF
Sbjct: 248 MPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLF 307
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M IRP++ T + + A +Y KC
Sbjct: 308 NGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKC 367
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI-------VGLAISDPFPTI-----RPDEVTYVGVL 135
G++ A++V KD +W MI VGL + + +P++VTYVG+L
Sbjct: 368 GEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLL 427
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 428 SACSHSG 434
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 18/152 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +V+G G V+ AR F MPER+ V W AMI GY R + EA LF
Sbjct: 186 MPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMIDEAHDLF 245
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M T +I I T ++ K ++E+AQ + KM R++ TWT M+ G S
Sbjct: 246 MKMPTRDIASWNIMI----TGFIQNK--NLERAQELFDKMPRRNVVTWTTMMNGYLQSIQ 299
Query: 121 FPT------------IRPDEVTYVGVLSACTH 140
T IRP++VT++G + AC++
Sbjct: 300 SETALQLFNGMLIDGIRPNQVTFLGAVDACSN 331
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++WT ++SGY G+VD A F +MPER+ V W M++ Y R +A TLF M
Sbjct: 96 RNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGM 155
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ + ++ + G+++KA+++ +M ++ WT M+ G+A S
Sbjct: 156 PVRDAGSWNILLAALV------RSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNE 209
Query: 124 IR 125
R
Sbjct: 210 AR 211
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V AR+ F + P+RD V WTA++ Y +A LF RPD V
Sbjct: 49 GRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD-------RPDARRNVVTW 101
Query: 80 TAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
TA + Y + G V++A+ + +M ++ +W M+
Sbjct: 102 TALLSGYARAGRVDEAEALFGRMPERNVVSWNTML 136
>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
Length = 590
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++ W ++ GY G++D AR F +MPER+ + W+ +IDG++R +EAL F
Sbjct: 240 MTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHF 299
Query: 61 PEMQTSNIRPDEFTIV---------------RILTAY------------------MYCKC 87
M IRPD V R L +Y MY KC
Sbjct: 300 QSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKC 359
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++ A + M + TW MIVGL + D+++ + +L
Sbjct: 360 GRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAML 419
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 420 TACTHAG 426
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 1 MKNKDVISWTDIVSGYINRG--QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
M +D SW ++ GY +G VD AR+ F QM ERD V W +MIDGY R R EA +
Sbjct: 207 MPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARS 266
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
LF EM P+ I + + +CG+ ++A + MLR
Sbjct: 267 LFEEM------PERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCG-------------- 306
Query: 119 DPFPTIRPDEVTYVGVLSACTHNG 142
IRPD V VG +SAC G
Sbjct: 307 -----IRPDRVAAVGAVSACAQLG 325
Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ Y+ G++D+A F MPER V W MI G +A+ LF M+
Sbjct: 345 DVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRME 404
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104
+ D+ +++ +LTA + G V + + +M +KD
Sbjct: 405 AERVAVDDLSLLAMLTACTH--AGLVSEGLEIFHRM-KKD 441
>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Vitis vinifera]
Length = 632
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK + V+SWT I+ G I V R F +MPER+ V WT MI GYL +E+ L
Sbjct: 179 MKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALV 238
Query: 61 PEM----------------QTSNIRPDEFTIVRILTAY-------------------MYC 85
EM T+ + + + R + AY MY
Sbjct: 239 REMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYA 298
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGV 134
KCG + A + +KM +++ +W AM+ GLA+ D FP + +PD+VT+ V
Sbjct: 299 KCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSV 358
Query: 135 LSACTHNG 142
LSAC+H+G
Sbjct: 359 LSACSHSG 366
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 35/130 (26%)
Query: 25 ARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82
AR+ F ++P +D V WT ++ ++R N EAL +F EM+ ++PDE T+V +
Sbjct: 69 ARKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGC 128
Query: 83 ---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWT 109
MY K G + +A+RV +M + +WT
Sbjct: 129 ARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWT 188
Query: 110 AMIVGLAISD 119
++ G+ S+
Sbjct: 189 VILDGVIRSE 198
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 81/186 (43%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D +SW ++ GYI G V A F MP ++ V WT++I G + + EAL+L EM
Sbjct: 152 RDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEM 211
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
Q + D I +LTA MY KCGD+
Sbjct: 212 QNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDM 271
Query: 91 EKAQRVLRKML--RKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
E+A V K+ +KD + WTAMI G AI IRP+ +T+ VL
Sbjct: 272 EEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLR 331
Query: 137 ACTHNG 142
AC++ G
Sbjct: 332 ACSYGG 337
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+V+ Y+ G ++ A F ++ ++D +WTAMIDG+ R EAL F M+ IR
Sbjct: 261 LVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIR 320
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+ T +L A Y G VE+ + + + M
Sbjct: 321 PNSITFTAVLRACSY--GGLVEEGKELFKSM 349
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 90.5 bits (223), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SG++ GQ+ AR F ++ ++ WTA++ GY R+ AL F
Sbjct: 152 MTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFF 211
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
MQ +I DE ++V +L A +Y K
Sbjct: 212 RRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKR 271
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPF-----PTIRPDEVTYVGVL 135
G +++ +R+ KM +D +W+ MIVGLA + F + P+ +T+VG+L
Sbjct: 272 GSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLL 331
Query: 136 SACTHNG 142
SAC H G
Sbjct: 332 SACAHAG 338
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALT 58
M+ +DV W +++GY G++D AR MP R+ V WT +I GY R R EA+
Sbjct: 177 MRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIE 236
Query: 59 LFPEMQTSNIRPDEFTIVRILTAY---------------------------------MYC 85
+F M N+ PDE T++ +L+A MY
Sbjct: 237 VFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYA 296
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVG 133
K G++ KA V + ++ TWT +I GLA ++P++VT++
Sbjct: 297 KSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIA 356
Query: 134 VLSACTHNG 142
+LSAC+H G
Sbjct: 357 ILSACSHVG 365
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A + F + ER+ V WT +I G EAL +F M + ++P+
Sbjct: 291 VIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPN 350
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+ T + IL+A + G V+ R M K
Sbjct: 351 DVTFIAILSACSH--VGWVDLGNRFFNSMRSK 380
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +++ ++SG + G V A + F MP D V WTA+IDG ++ R EA+ F
Sbjct: 76 MPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCF 135
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + PD T++ +++A MY +C
Sbjct: 136 RAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARC 195
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G VE A++V M ++ +W +MIVG A + + F +R PD VT+ GVL
Sbjct: 196 GQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVL 255
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 256 TACSHGG 262
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ T +VS G V AR+ F +M +D + W AMI GY++ + REAL+LF MQ
Sbjct: 176 DLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQ 235
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++ +E ++V +L+A MY KCG++
Sbjct: 236 REGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMN 295
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSACT 139
KA V M K+ +TW++ I GLA++ +++P+E+T+V VL C+
Sbjct: 296 KAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCS 355
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVG 133
K GDV A+++ KM KD W AMI G L++ + ++ +EV+ V
Sbjct: 189 KMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVS 248
Query: 134 VLSACTHNG 142
VLSAC+H G
Sbjct: 249 VLSACSHLG 257
>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
lyrata]
gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
lyrata]
Length = 1243
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D SW +VSGY + G +++AR YF + PE++ V W ++I Y + ++EA+ +F
Sbjct: 683 MPNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVF 742
Query: 61 PEMQTSNIRPDEFTIVRILTAY--------------------------------MYCKCG 88
M +PD T+ +L+ MY +CG
Sbjct: 743 IRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCG 802
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
++ +++R+ +M L+++ TW A+I G A I P +T+V VL
Sbjct: 803 EIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVL 862
Query: 136 SACTHNG 142
+AC H G
Sbjct: 863 NACAHAG 869
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR---EAL 57
++ +++++W ++SGY+ R ++ AR+ F +MPERD V W AMI GY+ R EA
Sbjct: 410 LEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVVTWNAMISGYVSCGGIRFLEEAR 469
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
LF EM + D F+ +++ Y K + +A + KM ++ +W+AMI G
Sbjct: 470 KLFDEMPSR----DSFSWNTMISG--YAKNRRISEALLLFEKMPERNAVSWSAMITGF 521
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQV---DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 57
M +DV++W ++SGY++ G + + AR+ F +MP RD W MI GY + R EAL
Sbjct: 441 MPERDVVTWNAMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEAL 500
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI 117
LF +M P+ + +C G+V +A + R+M KD + A++ GL
Sbjct: 501 LLFEKM------PERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIK 554
Query: 118 SDPFPTIRPDEVTYVGVLSACTHNGNETFV 147
++ R +E +V +G E V
Sbjct: 555 NE-----RLEEAAWVLGQYGSLDSGREDLV 579
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V+SW ++ Y+ G V AR F QM +RD + W MIDGY+ V+R +A LF EM
Sbjct: 624 RNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEM 683
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P+ + Y G++E A+ K K+ +W ++I
Sbjct: 684 ------PNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAA 728
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
I G + AR+ F ++ R+ V W MI GY++ +A LF EM P+ +
Sbjct: 395 IRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEM------PERDVVT 448
Query: 77 RILTAYMYCKCGDV---EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTIRP--- 126
Y CG + E+A+++ +M +D F+W MI G A IS+
Sbjct: 449 WNAMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMPE 508
Query: 127 -DEVTYVGVLSACTHNG 142
+ V++ +++ HNG
Sbjct: 509 RNAVSWSAMITGFCHNG 525
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPE----------------RDYVLWTAMIDGYLR 49
V ++ ++ GY RGQV+ AR F Q+P+ R+ V W +MI YL+
Sbjct: 579 VYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLK 638
Query: 50 VNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT 109
V A LF +M+ D TI Y ++ A + +M +D +W
Sbjct: 639 VGDVVSARLLFDQMK------DRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWN 692
Query: 110 AMIVGLA 116
M+ G A
Sbjct: 693 MMVSGYA 699
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV +++ Y G++ +R+ F +M +R+ + W A+I GY EAL LF M
Sbjct: 787 DVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSM 846
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94
+ I P T V +L A + D K Q
Sbjct: 847 KCYGIHPSHITFVSVLNACAHAGLVDEAKEQ 877
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW+ +++G+ + G+V+ A F +MP +D A++ G ++ R EA +
Sbjct: 506 MPERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERLEEAAWVL 565
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQ----------------RVLRKMLRKD 104
+ + + ++ Y + G VE A+ R+ R++
Sbjct: 566 GQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRN 625
Query: 105 KFTWTAMI 112
+W +MI
Sbjct: 626 VVSWNSMI 633
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ Y ++ A++ F ++ E+D + WT+M+ G + F+E+L LF +MQ I PD
Sbjct: 52 ILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPD 111
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T+V +L+A MY KCG ++ A +V R
Sbjct: 112 EITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFR 171
Query: 99 KMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
+M ++ FTW AMI GLA+ D + PD+VT++ +L AC+H G
Sbjct: 172 RMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAG 227
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D++ T +V Y G +D+A Q F +M R+ W AMI G +A++LF +
Sbjct: 144 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQ 203
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKC---GDVEKAQRVLRKMLRKDKF 106
M+ + PD+ T + +L C C G V++ + + M K+KF
Sbjct: 204 MEXDKLMPDDVTFIALL-----CACSHAGLVDEGLAMFQAM--KNKF 243
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT +++G+I ++ AR+ F +MP R+ V WTAMI GY++ L LF
Sbjct: 415 MEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELF 474
Query: 61 PEMQTSNIR-PDEFTIVRILTAY---------------------------------MYCK 86
EM+ P TIV +L+ MY K
Sbjct: 475 QEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAK 534
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G + A ++ ++M ++D F+WT MI GLA+ + F + P+EVT + V
Sbjct: 535 SGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTLLSV 594
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 595 LSACSHAG 602
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 18/143 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + +A + F +MP+RD WT MI G + AL F +M S P+E T+
Sbjct: 532 YAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGXXPNEVTL 591
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLR----KDKFTWTAMIVGL-----------AISDP 120
+ +L+A + G V + + + +KM++ K K +V L + +
Sbjct: 592 LSVLSACSH--AGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEH 649
Query: 121 FPTIRPDEVTYVGVLSACTHNGN 143
P I+PD V + +LSAC +GN
Sbjct: 650 MP-IKPDSVIWRSLLSACLVHGN 671
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G A++ F + D V WT +I YL ++ +A ++F + S +RPD
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
F +V ++A MY + G +E A V +
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413
Query: 99 KMLRKDKFTWTAMIVGL 115
M KD +WT+++ G
Sbjct: 414 TMEIKDVSSWTSLLNGF 430
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D I ++ Y G +++A F M +D WT++++G+++ N A +F E
Sbjct: 386 GSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDE 445
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M N + ++T Y+ G+V L + +R + W P
Sbjct: 446 MPMRN----SVSWTAMITGYVQ---GEVPIPGLELFQEMRAEGKDW-------------P 485
Query: 123 TIRPDEVTYVGVLSACTHNG 142
T+ +T V VLS C G
Sbjct: 486 TV----ITIVAVLSGCADIG 501
>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Cucumis sativus]
Length = 638
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 77/219 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR------ 54
M +D++SW I+ G+ G+++ A F +MP+RD + W+ MIDGY ++ +
Sbjct: 251 MPERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLF 310
Query: 55 -------------------------EALTLFPEMQ-TSNIRPDEFTIVRILTAY------ 82
EAL +F EMQ SN+ PDE T+V L+A
Sbjct: 311 DEMPDKDVVAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHV 370
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCG +E A + + +K W AMI G+
Sbjct: 371 EKAASMHNYFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGM 430
Query: 116 A------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
A + +++PD +T++GVL+AC H G
Sbjct: 431 ARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNACAHAG 469
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ ++ GY+ G +D+AR+ F MP +++ + W +M+ G+ + + AL
Sbjct: 186 MPIQDSVSYNSMIDGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLAL 245
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF +M P+ + + KCG +E A + +M ++D +W+ MI G A
Sbjct: 246 ELFEKM------PERDLVSWNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYA 298
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G ++ A F + ++ W AMI G R + A + EM +++PD
Sbjct: 395 LIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPD 454
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---------------DKFTWTAMIVG-L 115
T + +L A C + K + +++RK D ++ G L
Sbjct: 455 GITFIGVLNA---CAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGAL 511
Query: 116 AISDPFPTIRPDEVTYVGVLSACTHNGNET---------FVINSCN 152
+ P I P+++ + +LSAC ++ N T ++SCN
Sbjct: 512 KFIEEMP-IEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCN 556
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++++W ++ GY G +++AR+ F MPE+D V W+++IDGY++ + EA+ LF
Sbjct: 174 MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALF 233
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +E T+V L A MY KC
Sbjct: 234 ERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTIVLQTSLVDMYAKC 293
Query: 88 GDVEKAQRVLR--KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
G + +A V R + D W A+I GLA I PDE+TY+
Sbjct: 294 GAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPDEITYLC 353
Query: 134 VLSACTHNG 142
+LS C H G
Sbjct: 354 LLSCCAHGG 362
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 55/143 (38%), Gaps = 49/143 (34%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y + + AR+ F +MP ++ V W AM+DGY
Sbjct: 154 LIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGY------------------------ 189
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISD-- 119
KCGD+ A+ V M KD +W+++I G +A+ +
Sbjct: 190 -------------AKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERM 236
Query: 120 PFPTIRPDEVTYVGVLSACTHNG 142
F +EVT V L AC H G
Sbjct: 237 SFDGPMANEVTLVSALCACAHLG 259
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALT 58
N +W ++ + N + + F +M + DY+ + ++ ++ +
Sbjct: 75 NPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMA 134
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ + S D+F ++ +MY C D+ A++V +M RK+ TW AM+ G A
Sbjct: 135 VHVHIVKSGHEIDKFIQNSLI--HMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYA 190
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW +++GY G +D A F +MP R+ V WT MI GY + ++AL+LF
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 254
Query: 61 PEM--QTSNIRPDEFTIVRILTA---------------------------------YMYC 85
EM + S +RP+ TI+ +L A MY
Sbjct: 255 DEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 314
Query: 86 KCGDVEKAQRVLRKMLRKDK--FTWTAMIV-------GLAISDPF-----PTIRPDEVTY 131
KCG + A+ K+ R +K W MI GL F I+PD++T+
Sbjct: 315 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF 374
Query: 132 VGVLSACTHNG 142
G+LS C+H+G
Sbjct: 375 TGLLSGCSHSG 385
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 16 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y G + AR F ++ E++ + W MI Y +A++ F EM + I+PD+
Sbjct: 313 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 372
Query: 74 TIVRILTAYMYCKCGDV 90
T +L+ + DV
Sbjct: 373 TFTGLLSGCSHSGLVDV 389
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +++GY G++ A+ F +MP+RD V W AMI GY + EAL LF
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ R + + L+ MYCKC
Sbjct: 398 VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 457
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVL 135
G +E+A + ++M KD +W MI G + S ++PD+ T V VL
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 518 SACSHTG 524
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW I++GY G++D ARQ F + P +D WTAM+ GY++ EA LF
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304
Query: 61 PEMQTSN-----------IRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
+M N ++ + + + L M Y +CG + +A+
Sbjct: 305 DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 364
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-DPFPTIR 125
+ KM ++D +W AMI G + S F +R
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTLFPEM 63
+S+ ++SGY+ G+ ++AR+ F +MPERD V W MI GY+R + + RE + PE
Sbjct: 96 VSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE- 154
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
D + +L+ Y C V+ A+ V +M K+ +W A++
Sbjct: 155 ------RDVCSWNTMLSGYAQNGC--VDDARSVFDRMPEKNDVSWNALL 195
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 31/142 (21%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW ++SGY G VD AR F +MPE++ V W A++ Y++ ++ EA LF
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 61 PEMQ----------------------------TSNIRPDEFTIVRILTAYMYCKCGDVEK 92
+ + N+R D + I+T Y + G +++
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITG--YAQSGKIDE 268
Query: 93 AQRVLRKMLRKDKFTWTAMIVG 114
A+++ + +D FTWTAM+ G
Sbjct: 269 ARQLFDESPVQDVFTWTAMVSG 290
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+N ++SW ++ G++ + ++ ARQ+F M RD V W +I GY + + EA LF
Sbjct: 215 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
E ++ FT +++ Y+ + VE+A+ + KM +++ +W AM+ G
Sbjct: 275 ESPVQDV----FTWTAMVSGYIQNRM--VEEARELFDKMPERNEVSWNAMLAG 321
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ W +S Y+ G+ + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------ 116
M P+ + + Y + ++ KA+ + M +D +W M+ G A
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 117 ----ISDPFPTIRPDEVTYVGVLSACTHN 141
+ D P ++V++ +LSA N
Sbjct: 175 DARSVFDRMP--EKNDVSWNALLSAYVQN 201
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY+ + AR+ F MPERD W M+ GY + +A ++F
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180
Query: 61 PEMQTSN 67
M N
Sbjct: 181 DRMPEKN 187
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ A F +M +D V W MI GY R AL F M+ ++PD+ T+
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
V +L+A + G V+K ++ M
Sbjct: 514 VAVLSACSH--TGLVDKGRQYFYTM 536
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 57/195 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++SGY G + A F MPERD W A++ + F EA++LF
Sbjct: 188 MSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLF 247
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M +IRP+E T+V +L+A +Y K
Sbjct: 248 RRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGK 307
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI-------------------VGLAISDPFPTIRPD 127
CG++E+A V + +K W +MI + L I+D I+PD
Sbjct: 308 CGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIND----IKPD 363
Query: 128 EVTYVGVLSACTHNG 142
+T++G+L+ACTH G
Sbjct: 364 HITFIGLLNACTHGG 378
>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g22760-like [Vitis vinifera]
Length = 580
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ KDVISW ++SGY G ++ A F QMPER++ W AMI G++ A + F
Sbjct: 200 IPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFF 259
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M P + + + Y KCGDV+ A + ++ KD + AMI A
Sbjct: 260 DAM------PQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 313
Query: 117 ----------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ +P+ ++PDE+T V+SAC+ G+ F
Sbjct: 314 PNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRF 353
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW ++SGY G VD A + F Q+ +D +L+ AMI Y + +R EAL LF
Sbjct: 262 MPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLF 321
Query: 61 PEMQTS--NIRPDEFTIVRILTA---------------YM------------------YC 85
M N++PDE T+ +++A YM Y
Sbjct: 322 NNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYA 381
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
KCG ++KA + + +KD +TAMI+G I+ I P+ +T++G
Sbjct: 382 KCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIG 441
Query: 134 VLSACTHNG 142
+L+A H G
Sbjct: 442 LLTAYNHAG 450
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G ++IAR+ F +M ER+ V W +M+ GYL+ A +F E+
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEI------ 200
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P + I Y + GD+EKA + ++M ++ +W AMI G
Sbjct: 201 PQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISG 245
>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
Length = 594
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QM +RD V +M+ GY++ EAL +F
Sbjct: 258 MPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIF 317
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PDE T+V +L+A M+ K
Sbjct: 318 NDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDMHSK 377
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD----PFP--------TIRPDEVTYVGV 134
CG ++ A V + K W AMI GLAI F +I+PD +T++GV
Sbjct: 378 CGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGV 437
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 438 LNACSHSG 445
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ISW ++SGY ++ A + F++MPE+D + W +MI+G ++ R +A LF
Sbjct: 198 KNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGLFDV 257
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-------- 114
M R D T ++ Y K G V A+ + +M ++D +M+ G
Sbjct: 258 MP----RRDVVTWATMIDG--YAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHM 311
Query: 115 --LAISDPFPT---IRPDEVTYVGVLSACTHNG 142
L I + + PDE T V VLSA G
Sbjct: 312 EALEIFNDMEKDSHLSPDETTLVIVLSAIAQLG 344
Score = 52.8 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
W+D+ + Y+ G + ARQ F +MP+RD V + +MIDGY++ + A LF
Sbjct: 133 WSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLF-- 190
Query: 63 MQTSNIRPDEFTIVRILTAYM--YCKCGD-VEKAQRVLRKMLRKDKFTWTAMIVG 114
++ P E + + + Y + D + A ++ +M KD +W +MI G
Sbjct: 191 ----DLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMING 241
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 9/119 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRV-NRFREAL 57
M +D +S+ ++ GY+ G + A + F MP ++ + W +MI GY + + A
Sbjct: 162 MPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTAS 221
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
LF EM P++ I K G +E A+ + M R+D TW MI G A
Sbjct: 222 KLFSEM------PEKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYA 274
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV SWT +++G+I ++ AR+ F +MP R+ V WTAMI GY++ L LF
Sbjct: 164 MEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQGEVPIPGLELF 223
Query: 61 PEMQTSNIR-PDEFTIVRILTAY---------------------------------MYCK 86
EM+ P TIV +L+ MY K
Sbjct: 224 QEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAK 283
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-----------SDPFPT-IRPDEVTYVGV 134
G + A ++ ++M ++D F+WT MI GLA+ SD + + P+EVT + V
Sbjct: 284 SGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTLLSV 343
Query: 135 LSACTHNG 142
LSAC+H G
Sbjct: 344 LSACSHAG 351
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G + +A + F +MP+RD WT MI G + AL F +M S + P+E T+
Sbjct: 281 YAKSGALVLALKIFQEMPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSGVVPNEVTL 340
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLR----KDKFTWTAMIVGL-----------AISDP 120
+ +L+A + G V + + + +KM++ K K +V L + +
Sbjct: 341 LSVLSACSH--AGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLREAKELIEH 398
Query: 121 FPTIRPDEVTYVGVLSACTHNGN 143
P I+PD V + +LSAC +GN
Sbjct: 399 MP-IKPDSVIWRSLLSACLVHGN 420
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 33/137 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G A++ F + D V WT +I YL ++ +A ++F + S +RPD
Sbjct: 43 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
F +V ++A MY + G +E A V +
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162
Query: 99 KMLRKDKFTWTAMIVGL 115
M KD +WT+++ G
Sbjct: 163 TMEIKDVSSWTSLLNGF 179
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D I ++ Y G +++A F M +D WT++++G+++ N A +F E
Sbjct: 135 GSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDE 194
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M N + ++T Y+ G+V L + +R + W P
Sbjct: 195 MPMRN----SVSWTAMITGYVQ---GEVPIPGLELFQEMRAEGKDW-------------P 234
Query: 123 TIRPDEVTYVGVLSACTHNG 142
T+ +T V VLS C G
Sbjct: 235 TV----ITIVAVLSGCADIG 250
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++SW ++ GY+ G VD A + F ++P ++ V WT +I G+++ + EAL F
Sbjct: 152 MGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECF 211
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ + + PD T++ I++A MY +C
Sbjct: 212 REMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARC 271
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI------------SDPFPTIRPDEVTYVGVL 135
G +E A++V M +++ +W ++IVG A+ S + P+ V+Y L
Sbjct: 272 GCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSAL 331
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 332 TACSHAG 338
>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 649
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + DV+SW I+SG +G +++A+ +F +MP ++ + W +I GY + ++ A+ LF
Sbjct: 334 MPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLF 393
Query: 61 PEMQTSNIRPDEFTIVRILTAY--------------------------------MYCKCG 88
EMQ RPD+ T+ +++ MY +CG
Sbjct: 394 SEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDSPINNSLITMYSRCG 453
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
+ A V ++ L KD TW AMI G A I P +T++ VL
Sbjct: 454 AIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVL 513
Query: 136 SACTHNG 142
+AC H G
Sbjct: 514 NACAHAG 520
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V+SW ++ Y+ G + AR+ F +M ERD W +I Y++++ EA LF EM
Sbjct: 275 RNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREM 334
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ PD + I++ + GD+ A+ +M K+ +W +I G ++ +
Sbjct: 335 PS----PDVLSWNSIISG--LAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKG 388
Query: 124 I------------RPDEVTYVGVLSACT 139
RPD+ T V+S T
Sbjct: 389 AIKLFSEMQLEGERPDKHTLSSVISVST 416
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV--NRF-REAL 57
MK +D ++W ++SGY+ R ++ ARQ F +MP RD V W ++ GY +RF E
Sbjct: 64 MKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGR 123
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI 117
LF M P + Y K G +++A ++ M + ++ A+I G +
Sbjct: 124 RLFELM------PQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLL 177
Query: 118 SDPFPTI--------RPDEVTYVGVLSACTHNG 142
+ + D + ++S NG
Sbjct: 178 NGDVESAVGFFRTMPEHDSTSLCALISGLVRNG 210
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+S I G++ AR F M RD V W +MI GY++ A LF EM R D
Sbjct: 45 LSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMP----RRDV 100
Query: 73 FTIVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ I++ Y C CG VE+ +R+ M ++D +W +I G A
Sbjct: 101 VSWNLIVSGYFSC-CGSRFVEEGRRLFELMPQRDCVSWNTVISGYA 145
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SW ++SGY G++D A + F MPE + V + A+I G+L A+ F
Sbjct: 129 MPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAVGFF 188
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99
M D ++ +++ + + G+++ A +LR+
Sbjct: 189 RTMPEH----DSTSLCALISGLV--RNGELDLAAGILRE 221
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 19/128 (14%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMP-------------ERDYVLWTAMIDGYL 48
K+ V ++ +++GY RG V+ AR+ F +P R+ V W +M+ Y+
Sbjct: 229 KDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYV 288
Query: 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTW 108
+ A LF M + D + +++ Y+ + ++E+A ++ R+M D +W
Sbjct: 289 KAGDIVFARELFDRM----VERDNCSWNTLISCYV--QISNMEEASKLFREMPSPDVLSW 342
Query: 109 TAMIVGLA 116
++I GLA
Sbjct: 343 NSIISGLA 350
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 35 RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94
+D + W AMI GY EAL LF M+ I P T + +L A + G VE+
Sbjct: 469 KDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAH--AGLVEEGW 526
Query: 95 RVLRKML-------RKDKFTWTAMIVG----------LAISDPFPTIRPDEVTYVGVLSA 137
R + M+ R + F I+G L + PF +PD+ + +L A
Sbjct: 527 RQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPF---KPDKAVWGALLGA 583
Query: 138 C-THNGNETFVI 148
C HN E ++
Sbjct: 584 CRVHNNVELALV 595
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+++SW +V GY G ++ A+ F MP R+ V W+A+I G+L +F E +F EM
Sbjct: 380 KNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEM 439
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
P++ T +L A MY K GD+
Sbjct: 440 ILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDI 499
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSA 137
E +++V +M +K++ +WTAMI GLA S + +I P+EV ++ VL A
Sbjct: 500 ESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFA 559
Query: 138 CTHNG 142
C+H+G
Sbjct: 560 CSHSG 564
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 33/151 (21%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KDV+SWT I+ Y+ ++ AR+ F +MP+R+ V W+AMI Y + E+L LF
Sbjct: 245 MEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLF 304
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +P+ IL+A MYCKC
Sbjct: 305 CRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKC 364
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
G+ + + + +L K+ +W AM+ G +++
Sbjct: 365 GETKDGRFLFDTILEKNMVSWNAMVGGYSLN 395
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 33/145 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ISWT ++SG++ G+V + YF + P ++ V WTA I GY++ EA+ LF
Sbjct: 113 MPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLF 172
Query: 61 PEMQTSNIRPDEFTIVRIL---------------------TAYMY------------CKC 87
++ S ++P++ T ++ T Y + +
Sbjct: 173 IKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRM 232
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI 112
G++ A+ V +M KD +WTA++
Sbjct: 233 GEIHLAREVFDRMEEKDVVSWTAIL 257
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ ++S + RG +D AR+ F +MP+ + + WTA+I G+++ R RE++ F
Sbjct: 86 DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFER-- 143
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
P + + Y + G +A ++ K+L + +
Sbjct: 144 ----NPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESE-------------------V 180
Query: 125 RPDEVTYVGVLSACTHNGN 143
+P++VT+ V+ AC + G+
Sbjct: 181 KPNKVTFTSVVRACANLGD 199
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ +++ + G++ +AR+ F +M E+D V WTA++D Y+ ++ EA +F EM
Sbjct: 218 DLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMP 277
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
N I R YC+ G E++ R+ +M+++
Sbjct: 278 QRNEVSWSAMIAR------YCQSGYPEESLRLFCRMIQE 310
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW +++GY G +D A F +MP R+ V WT MI GY + ++AL+LF
Sbjct: 232 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLF 291
Query: 61 PEM--QTSNIRPDEFTIVRILTA---------------------------------YMYC 85
EM + S +RP+ TI+ +L A MY
Sbjct: 292 DEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYA 351
Query: 86 KCGDVEKAQRVLRKMLRKDK--FTWTAMIV-------GLAISDPF-----PTIRPDEVTY 131
KCG + A+ K+ R +K W MI GL F I+PD++T+
Sbjct: 352 KCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITF 411
Query: 132 VGVLSACTHNG 142
G+LS C+H+G
Sbjct: 412 TGLLSGCSHSG 422
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 16 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y G + AR F ++ E++ + W MI Y +A++ F EM + I+PD+
Sbjct: 350 YAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDI 409
Query: 74 TIVRILTAYMYCKCGDV 90
T +L+ + DV
Sbjct: 410 TFTGLLSGCSHSGLVDV 426
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS ++N G + A+ F MP+RD V W +I G+++ + + A F MQ S I+PD
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ T +L A MY KCG +E A +V
Sbjct: 615 KITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFH 674
Query: 99 KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
K+ +K+ ++WT+MI G A ++PD +T+VG LSAC H G
Sbjct: 675 KLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG 730
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ T +++ +I G + A + F +P RD V WT+MI G R RF++A LF
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+ ++PD+ V +L A MY KCG
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSA 137
+E A V + ++ +WTAMI G A I + F I P+ VT++ +L A
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422
Query: 138 CT 139
C+
Sbjct: 423 CS 424
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ +++ Y G A+Q F M E+D W ++ GY++ + EA L +M
Sbjct: 144 DIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+++PD+ T V +L A M+ KCGD+
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
A +V + +D TWT+MI GLA F ++PD+V +V +L AC
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323
Query: 140 H 140
H
Sbjct: 324 H 324
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T I+S Y G ++ A + F + R+ V WTAMI G+ + R EA F +M S I
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P+ T + IL A MY KCG ++ A RV
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
K+ +++ W AMI + + I+P+ T+ +L+ C
Sbjct: 471 FEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++S Y G ++ A Q F ++P+++ WT+MI GY + R +EAL LF +MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQ 708
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
++PD T V L+A + G +E+ + M
Sbjct: 709 QEGVKPDWITFVGALSACAH--AGLIEEGLHHFQSM 742
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G + A + F ++ +++ V W AMI Y++ ++ AL F + I+
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P+ T IL M+ CGD+ A+ +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
M ++D +W +I G D F I+PD++T+ G+L+AC
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 87/194 (44%), Gaps = 46/194 (23%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ D I WT +VSGY++ G V A ++F MP R+ V W A++ GY++ +R +AL +F
Sbjct: 167 EKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFK 226
Query: 62 EM-QTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M + S ++P+ T+ +L MYCKC
Sbjct: 227 TMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKC 286
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVL 135
GD+ A +V +M KD W AMI G A F ++ PD +T + VL
Sbjct: 287 GDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVL 346
Query: 136 SACTHNGNETFVIN 149
+AC H G F I
Sbjct: 347 TACIHTGLCDFGIQ 360
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D +S+ ++S + G +D AR+ F+ MP +D W M+ G + EA +F
Sbjct: 74 HPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRI 133
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-DKFTWTAMIVG 114
M N + A + C GD+ A+ + R K D WTAM+ G
Sbjct: 134 MPVRNA-----VSWNAMVAALACS-GDMGAAEDLFRNAPEKTDAILWTAMVSG 180
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SW +VSG G + A F MP R+ V W AM+ A LF
Sbjct: 103 MPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLF 162
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ + + D +++ YM G+V+KA M ++ +W A++ G
Sbjct: 163 ---RNAPEKTDAILWTAMVSGYM--DTGNVQKAMEFFGAMPVRNLVSWNAVVAG 211
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN---RFREALTLFPEMQTS 66
T V+ + RG + A + FA + + ++ GY + + R +A LF +
Sbjct: 16 TVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIP-- 73
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
PD + +L+ + CGD++ A+RV M KD +W M+ GL+
Sbjct: 74 --HPDTVSYNTLLSCHF--ACGDIDGARRVFSTMPVKDVTSWNTMVSGLS 119
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKD++SW +++GY GQ+ A F +M R+ V W ++I G+++ +RF +AL F
Sbjct: 385 MPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDALHHF 444
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M+ R D T L A Y KC
Sbjct: 445 MLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKC 504
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G + +A+++ +M+ KD +W A+I G A + +RPDEVT+VG+L
Sbjct: 505 GRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGIL 564
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 565 SACSHAG 571
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V + T ++ GY+ R D AR+ F M D V W MI GY++ EA+ LF M
Sbjct: 328 VAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRM-- 385
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF---- 121
P++ + Y + G + KA + R+M R++ +W ++I G +D F
Sbjct: 386 ----PNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGFVQNDRFVDAL 441
Query: 122 --------PTIRPDEVTYVGVLSACTH 140
T R D TY L AC +
Sbjct: 442 HHFMLMRRGTNRADWSTYASCLRACAN 468
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 68/172 (39%), Gaps = 56/172 (32%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+++ +VISW +++GY G++ AR F +MPER+ V W M+DGY+ ++ EA LF
Sbjct: 230 IESPNVISWVTLLNGYCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLF 289
Query: 61 PEMQTSN-----------------------IRPDEFTIVRILTAYM-------------- 83
EM N + F V TA M
Sbjct: 290 DEMPIKNSISWTTIISGLARAGKLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARR 349
Query: 84 -------------------YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
Y +CG +E+A + ++M KD +W MI G A
Sbjct: 350 IFDGMEVHDTVCWNTMISGYVQCGILEEAMLLFQRMPNKDMVSWNTMIAGYA 401
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ SW +++G++ G ++ A +FA++ + + W +++GY R R +A LF M
Sbjct: 202 KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDLFDRM 261
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
P+ + + Y +E+A ++ +M K+ +WT +I GLA
Sbjct: 262 ------PERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLA 308
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +++ ++S G++D AR F MP R+ V W AMI R +A +LF
Sbjct: 44 MPLRNTVTYNAMLSALARHGRIDEARALFDGMPGRNTVSWNAMIAALSDHGRVADARSLF 103
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT--WTAMIVGLA-- 116
M DEF+ +++ Y + GD+E A+ VL +M DK T + AMI G A
Sbjct: 104 DRMPVR----DEFSWTVMVSC--YARGGDLELARDVLDRM-PGDKCTACYNAMISGYAKN 156
Query: 117 --ISDPFPTIR----PDEVTYVGVLSACTHNG 142
D +R PD V++ L+ T +G
Sbjct: 157 GRFDDAMKLLREMPAPDLVSWNSALAGLTQSG 188
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M D++SW ++G G++ A Q+F +M +D W M+ G++R A + F
Sbjct: 169 MPAPDLVSWNSALAGLTQSGEMVRAVQFFDEMV-KDMTSWNLMLAGFVRTGDLNAASSFF 227
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
++++ N+ + V +L YC+ G + A+ + +M ++ W M+ G P
Sbjct: 228 AKIESPNV----ISWVTLLNG--YCRAGRIADARDLFDRMPERNVVAWNVMLDGYVHLSP 281
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
GQ+ AR+ F MP R+ V + AM+ R R EA LF M P T+
Sbjct: 32 GQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGM------PGRNTVSWNA 85
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
G V A+ + +M +D+F+WT M+
Sbjct: 86 MIAALSDHGRVADARSLFDRMPVRDEFSWTVMV 118
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS ++N G + A+ F MP+RD V W +I G+++ + + A F MQ S I+PD
Sbjct: 555 LVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPD 614
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ T +L A MY KCG +E A +V
Sbjct: 615 KITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFH 674
Query: 99 KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
K+ +K+ ++WT+MI G A ++PD +T+VG LSAC H G
Sbjct: 675 KLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG 730
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 45/181 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ W +++ Y G A+Q F M E+D W ++ GY++ + EA L +M
Sbjct: 144 DIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMV 203
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+++PD+ T V +L A M+ KCGD+
Sbjct: 204 QDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIG 263
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
A +V + +D TWT+MI GLA F ++PD+V +V +L AC
Sbjct: 264 DATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACN 323
Query: 140 H 140
H
Sbjct: 324 H 324
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 45/182 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ T +++ +I G + A + F +P RD V WT+MI G R RF++A LF
Sbjct: 243 DTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQR 302
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M+ ++PD+ V +L A MY KCG
Sbjct: 303 MEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGS 362
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSA 137
+E A V + ++ +WTAMI G A I + F I P+ VT++ +L A
Sbjct: 363 MEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGA 422
Query: 138 CT 139
C+
Sbjct: 423 CS 424
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 45/174 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T I+S Y G ++ A + F + R+ V WTAMI G+ + R EA F +M S I
Sbjct: 351 TAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIE 410
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P+ T + IL A MY KCG ++ A RV
Sbjct: 411 PNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
K+ +++ W AMI + + I+P+ T+ +L+ C
Sbjct: 471 FEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVC 524
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++S Y G ++ A Q F ++P+++ WT+MI GY + R +EAL LF +MQ
Sbjct: 649 DVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQ 708
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
++PD T V L+A + G +E+ + M
Sbjct: 709 QEGVKPDWITFVGALSACAH--AGLIEEGLHHFQSM 742
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++S Y G + A + F ++ +++ V W AMI Y++ ++ AL F + I+
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P+ T IL M+ CGD+ A+ +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
M ++D +W +I G D F I+PD++T+ G+L+AC
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626
>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 661
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +V+ Y G ++ A + F MP R+ V W+ MI Y + N+ EA+ LF
Sbjct: 304 MAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLF 363
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M + P +V +L+A +Y K
Sbjct: 364 KAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAK 423
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGV 134
CGD + A ++ +M ++ +W +MI+ A+ F ++ PDE+T++G+
Sbjct: 424 CGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGL 483
Query: 135 LSACTHNG 142
LSAC+H+G
Sbjct: 484 LSACSHSG 491
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 34/147 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ V+ +V Y N + AR F +MP+RD V WT ++DGY R EA +F M
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233
Query: 64 QTS-NIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ ++P+E T+V +++A M+ K G
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGC 293
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
A+ V M KD ++WT M+ A
Sbjct: 294 AASAREVFDSMAVKDVYSWTTMVNAYA 320
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 74/194 (38%), Gaps = 58/194 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PE------------------- 34
M ++DV+SWT +V GY RG D A + F +M P
Sbjct: 202 MPDRDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAF 261
Query: 35 --------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
R L A+ID + + A +F M ++ ++ ++
Sbjct: 262 GRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDV----YSWTTMVN 317
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-PFPTIR-----------PDE 128
AY KCGD+E A R+ M R++ +W+ MI + ++ P +R P
Sbjct: 318 AY--AKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPIN 375
Query: 129 VTYVGVLSACTHNG 142
V VLSAC G
Sbjct: 376 AGLVSVLSACAQLG 389
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 18/143 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G D A + FA+M ER+ V W +MI + + E L LF +++ + I PDE T
Sbjct: 421 YAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITF 480
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGL-----AISDP 120
+ +L+A + G V + +R ++M + + MI +GL ++
Sbjct: 481 LGLLSACSH--SGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKG 538
Query: 121 FPTIRPDEVTYVGVLSACTHNGN 143
P + DE + +L+AC GN
Sbjct: 539 MP-METDEAGWGALLNACRMYGN 560
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/182 (31%), Positives = 79/182 (43%), Gaps = 44/182 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V Y G D+ARQ F MP R+ V W A+I G+ + EAL LF EM
Sbjct: 246 DVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMS 305
Query: 65 TSNIRPDEFTIVRILTAY--------------------------------MYCKCGDVEK 92
TS ++PD +V L A MY KCG +E
Sbjct: 306 TSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLES 365
Query: 93 AQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGVLSACTH 140
A+++ K+ +D W AMI LA+ I+PD T+ +LSA +H
Sbjct: 366 ARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSH 425
Query: 141 NG 142
+G
Sbjct: 426 SG 427
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV + ++ Y G + A + F MP +D+V W+ M+ G++ R EAL ++ M
Sbjct: 144 RDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRM 203
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + DE +V ++ A MY K G
Sbjct: 204 REHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHF 263
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSAC 138
+ A++V R M ++ +W A+I G A + D F ++PD V L AC
Sbjct: 264 DVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLAC 323
Query: 139 THNG 142
G
Sbjct: 324 ADVG 327
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 64/180 (35%), Gaps = 50/180 (27%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVL--WTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ + Y G +D A A P + W A++ R AL +F + +S R
Sbjct: 50 LAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSS-AR 108
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PD T LTA ++Y +CG + A RV
Sbjct: 109 PDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRV 168
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNGN 143
M RKD W+ M+ G +S P + DEV VGV+ ACT GN
Sbjct: 169 FDGMPRKDHVAWSTMVAGF-VSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGN 227
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T I+ Y G++ AR F +MP+R+ V+W +MI Y + R EAL LF +M+
Sbjct: 247 NVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDME 306
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ P++ T + +++A MY K GD +
Sbjct: 307 MAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDAD 366
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSAC 138
A ++ K+ +KD WT MI GLAI + + PD++TY+ VL AC
Sbjct: 367 TALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWAC 426
Query: 139 THNG 142
+H G
Sbjct: 427 SHLG 430
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 52/190 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + + +++ Y++ G ++ + F +P+ + V WT++I G++ ++ +EAL LF +M+
Sbjct: 139 DVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDME 198
Query: 65 TSNIRPDEFTI--------------------------------------VRILTAY--MY 84
+ P+E T+ V + TA MY
Sbjct: 199 NEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMY 258
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------------LAISDPFPTIRPDEVTYV 132
KCG + A+ + KM +++ W +MI L + P++ T++
Sbjct: 259 AKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFL 318
Query: 133 GVLSACTHNG 142
V+SACTH G
Sbjct: 319 SVISACTHMG 328
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 34/140 (24%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ AR F Q+ +R +W +MI GY AL ++ EMQ PD FT +L
Sbjct: 53 GDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVL 112
Query: 80 ---------------------TAY------------MYCKCGDVEKAQRVLRKMLRKDKF 106
T + MY CGD+ +V + + +
Sbjct: 113 KVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 172
Query: 107 TWTAMIVGLAISD-PFPTIR 125
WT++I G +D P +R
Sbjct: 173 AWTSLIAGFVNNDQPKEALR 192
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G++++AR+ F +MP +D V W+ MI G+ F EA F
Sbjct: 198 MPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFF 257
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
E+Q +RP+E ++ L+A Y KC
Sbjct: 258 RELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKC 317
Query: 88 GDVEKAQRVLRKMLRKDKF-TWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
G+V A+ V +M K +WT+MI GLA+ IRPD + ++ +
Sbjct: 318 GNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISI 377
Query: 135 LSACTHNG 142
L AC+H G
Sbjct: 378 LYACSHAG 385
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +VS Y G V A++ F +M E + V W A++ R + A +F M N+
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNL- 203
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
T ++ A Y K G++E A+++ +M KD +W+ MIVG A + F
Sbjct: 204 ----TSWNVMLA-GYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFR 258
Query: 122 ----PTIRPDEVTYVGVLSACTHNGNETF 146
+RP+EV+ G LSAC G F
Sbjct: 259 ELQQVGMRPNEVSLTGALSACADAGAIEF 287
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G V +AR F +MPE R V WT+MI G EA+ LF EM+ S IRP
Sbjct: 310 LLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRP 369
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
D + IL Y G +EK KM
Sbjct: 370 DGIAFISIL--YACSHAGLIEKGYEYFYKM 397
>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
Length = 706
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 79/183 (43%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V G+ D AR+ F MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ E T+V LTA MY KCG V
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V M ++ +TWT+ + GLA++ + P+ VT+V VL C+
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446
Query: 140 HNG 142
G
Sbjct: 447 MAG 449
>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
Length = 706
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 79/183 (43%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V G+ D AR+ F MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ E T+V LTA MY KCG V
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V M ++ +TWT+ + GLA++ + P+ VT+V VL C+
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446
Query: 140 HNG 142
G
Sbjct: 447 MAG 449
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 79/183 (43%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T +V G+ D AR+ F MP+RD+V W AMI GY+ R REAL LF EM+
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ E T+V LTA MY KCG V
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 379
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A V M ++ +TWT+ + GLA++ + P+ VT+V VL C+
Sbjct: 380 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 439
Query: 140 HNG 142
G
Sbjct: 440 MAG 442
>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
Length = 661
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 78/184 (42%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ +W +++ Y N GQV+ A++ F MP ++ V W +IDGY N EAL LF
Sbjct: 304 MPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLF 363
Query: 61 PEMQTSNIRPDEFTIVRILT------------------------------AYMYCKCGDV 90
M S + PD T++ +L MY + GD+
Sbjct: 364 LLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDL 423
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSAC 138
A R++ KD TWT+MI LA P +P T+ VLSAC
Sbjct: 424 SSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSAC 483
Query: 139 THNG 142
H G
Sbjct: 484 NHVG 487
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SWT +V GY + G + AR+ F +MPER+ V WT M+ Y+ +EAL LF
Sbjct: 180 MPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N ++ + T M G V+ A ++ KM K+ +WT M+ GLA
Sbjct: 240 NRMPQMN----SYSWNAMATGLM--SAGKVDDAVQLFDKMPHKNVVSWTIMVTGLA 289
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT +VSGY G VD AR+ F MP R+ WT M+ GY REA +F
Sbjct: 149 MAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMF 208
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+M P+ + + Y G +++A + +M + + ++W AM GL
Sbjct: 209 DKM------PERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGL 257
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ GY+ GQVD AR+ F M ++ V WT M+ GY R EA LF M N+
Sbjct: 127 TVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNV- 185
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
F+ ++ Y + G + +A+ + KM ++ WT M+
Sbjct: 186 ---FSWTTMVQGYAH--NGMLREAREMFDKMPERNVVAWTVMV 223
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +V Y++ G + A + F +MP+ + W AM G + + +A+ LF
Sbjct: 211 MPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLF 270
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M N+ +TI+ A + G V +A+ +M +KD W +MI
Sbjct: 271 DKMPHKNVV--SWTIMVTGLA----QNGFVSRAREFFDRMPKKDIPAWNSMI 316
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + SW + +G ++ G+VD A Q F +MP ++ V WT M+ G + A F
Sbjct: 242 MPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFF 301
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
M +I P +++ TAY G V AQR+ M K+ TW +I G ++++
Sbjct: 302 DRMPKKDI-PAWNSMI---TAY--TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNL 355
Query: 120 -----------PFPTIRPDEVTYVGVL 135
+ PD T + VL
Sbjct: 356 KDEALRLFLLMLRSAVSPDSTTLISVL 382
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G + AR+ F MP+RD V W A+I GY + + EAL +F
Sbjct: 320 MPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMF 379
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM+ + T L+ MY KC
Sbjct: 380 VEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKC 439
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVL 135
G ++A V + KD +W MI G A S ++PDE+T VGVL
Sbjct: 440 GSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVL 499
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 500 SACSHSG 506
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ D+++W +S ++ G D A + F MP R V + AMI GYLR +F A LF
Sbjct: 42 KDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFD 101
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF 121
+M ++ F+ +LT Y+ + + +A ++ M +KD +W AM+ G A +
Sbjct: 102 KMPERDL----FSWNVMLTGYVRNR--RLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFV 155
Query: 122 PTIRP--------DEVTYVGVLSACTHNG 142
R + +++ G+L+A HNG
Sbjct: 156 DEAREVFNKMPHRNSISWNGLLAAYVHNG 184
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW ++SGY G VD AR+ F +MP R+ + W ++ Y+ R +EA LF
Sbjct: 134 MPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLF 193
Query: 61 PE-----------MQTSNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
+ ++ + R L M Y + GD+ +A+R
Sbjct: 194 ESQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKR 253
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ + +D FTWTAM+ G
Sbjct: 254 LFNESPIRDVFTWTAMVSG 272
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV +WT +VSGY+ G VD AR+YF +MP ++ + + AM+ GY++ + A LF M
Sbjct: 261 RDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAM 320
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
NI I Y + G + +A+++ M ++D +W A+I G A
Sbjct: 321 PCRNISSWNTMITG------YGQNGGIAQARKLFDMMPQRDCVSWAAIISGYA 367
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 6/112 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N ++ISW ++ GY+ R + ARQ F +MP RD + W MI GY +V +A LF E
Sbjct: 198 NWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE 257
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
S IR D FT +++ Y+ + G V++A++ +M K++ ++ AM+ G
Sbjct: 258 ---SPIR-DVFTWTAMVSGYV--QNGMVDEARKYFDEMPVKNEISYNAMLAG 303
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +S+ ++SGY+ + +AR F +MPERD W M+ GY+R R EA LF
Sbjct: 72 MPRRSSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLF 131
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
M + D + +L+ Y + G V++A+ V KM ++ +W ++
Sbjct: 132 DLMP----KKDVVSWNAMLSG--YAQNGFVDEAREVFNKMPHRNSISWNGLLA 178
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW ++SGY G + A++ F + P RD WTAM+ GY++ EA F
Sbjct: 227 MPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYF 286
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
EM N E + +L Y+ K + A + M ++ +W MI G +
Sbjct: 287 DEMPVKN----EISYNAMLAGYVQYK--KMVIAGELFEAMPCRNISSWNTMITGYGQNGG 340
Query: 121 FPTIRP--------DEVTYVGVLSACTHNGNETFVIN 149
R D V++ ++S NG+ +N
Sbjct: 341 IAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 85/193 (44%), Gaps = 51/193 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ T ++SGY AR F +M ER+ V W A+I GY + EAL+LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
++ ++ P ++ IL A
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEV 129
MY KCG VE+ V RKM+ +D +W AMI+G A + + F + +PD +
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494
Query: 130 TYVGVLSACTHNG 142
T +GVLSAC H G
Sbjct: 495 TMIGVLSACGHAG 507
Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ +W +V+G G +D A F MPERD W +M+ G+ + +R EAL F
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +E++ +L+A MY KC
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G+V AQRV +M ++ +W ++I + P + PDEVT V+
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 136 SAC 138
SAC
Sbjct: 261 SAC 263
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y+ G V+ F +M ERD V W AMI G+ + EAL LF EM
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA- 116
S +PD T++ +L+A + G VE+ + M R +D +T ++G A
Sbjct: 486 ESGEKPDHITMIGVLSACGH--AGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ + P ++PD V + +L+AC + N T
Sbjct: 544 FLEEAKSMIEEMP-MQPDSVIWGSLLAACKVHRNITL 579
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 34/148 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G V+ A++ F +M +R+ V W ++I + + EAL +F M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
S + PDE T+ +++A MY KC +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
++A+ + M ++ T+MI G A++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMA 333
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 52/181 (28%), Positives = 82/181 (45%), Gaps = 42/181 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+++ W + + G + A + F MPERD + W ++I GY ++ + AL +F +M
Sbjct: 249 RNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDM 308
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++I P E T+V L A MY KCG++
Sbjct: 309 WKNDIEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCGNL 368
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD---------PFPTIRPDEVTYVGVLSACTHN 141
+ A++V M KD W MIVGL++ I PD VT++GVL+AC+H+
Sbjct: 369 KLARQVFDSMSIKDVTCWNTMIVGLSVHGHSHDALKLFDLMNIEPDHVTFLGVLTACSHS 428
Query: 142 G 142
G
Sbjct: 429 G 429
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+VS Y G++ AR+ F +MP ++ V W A++ + + A + NI
Sbjct: 195 LVSMYGQFGRLGEARKAFDEMPVKNAVSWNALVVAHGVSGDLQGAERVSQATPERNISWW 254
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPF--- 121
I+R + + GD+ +A R+ R M +D +W ++I G A D F
Sbjct: 255 NSEIMRNV------RLGDLVEAARIFRDMPERDVISWNSLISGYAKLGMYSRALDVFRDM 308
Query: 122 --PTIRPDEVTYVGVLSACTHNG 142
I P E+T V L AC G
Sbjct: 309 WKNDIEPTELTVVSALGACAEVG 331
>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
Length = 661
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 78/184 (42%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ +W +++ Y N GQV+ A++ F MP ++ V W +IDGY N EAL LF
Sbjct: 304 MPKKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLF 363
Query: 61 PEMQTSNIRPDEFTIVRILT------------------------------AYMYCKCGDV 90
M S + PD T++ +L MY + GD+
Sbjct: 364 LLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDL 423
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSAC 138
A R++ KD TWT+MI LA P +P T+ VLSAC
Sbjct: 424 SSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSAC 483
Query: 139 THNG 142
H G
Sbjct: 484 NHVG 487
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SWT +V GY + G + AR+ F +MPER+ V WT M+ Y+ +EAL LF
Sbjct: 180 MPYRNVFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M N ++ + T M G V+ A ++ KM K+ +WT M+ GLA
Sbjct: 240 NRMPQMN----SYSWNAMATGLM--SAGKVDDAVQLFDKMPHKNVVSWTIMVTGLA 289
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT +VSGY G VD AR+ F MP R+ WT M+ GY REA +F
Sbjct: 149 MAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNGMLREAREMF 208
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+M P+ + + Y G +++A + +M + + ++W AM GL
Sbjct: 209 DKM------PERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGL 257
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ GY+ GQVD AR+ F M ++ V WT M+ GY R EA LF M N+
Sbjct: 127 TVMLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNV- 185
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
F+ ++ Y + G + +A+ + KM ++ WT M+
Sbjct: 186 ---FSWTTMVQGYAH--NGMLREAREMFDKMPERNVVAWTVMV 223
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +V Y++ G + A + F +MP+ + W AM G + + +A+ LF
Sbjct: 211 MPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMSAGKVDDAVQLF 270
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M N+ +TI+ A + G V +A+ +M +KD W +MI
Sbjct: 271 DKMPHKNVV--SWTIMVTGLA----QNGFVSRAREFFDRMPKKDIPAWNSMI 316
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 18/147 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + SW + +G ++ G+VD A Q F +MP ++ V WT M+ G + A F
Sbjct: 242 MPQMNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFF 301
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
M +I P +++ TAY G V AQR+ M K+ TW +I G ++++
Sbjct: 302 DRMPKKDI-PAWNSMI---TAY--TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNL 355
Query: 120 -----------PFPTIRPDEVTYVGVL 135
+ PD T + VL
Sbjct: 356 KDEALRLFLLMLRSAVSPDSTTLISVL 382
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G++ AR+ F + +D V W AMI GY + +EA+ LF M+ PD
Sbjct: 259 LVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPD 318
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T+V +L+A MY KCGD++KA +V
Sbjct: 319 KITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSKCGDLDKAVQVFG 378
Query: 99 KMLRKDKFTWTAMIVGLAISD-------PFPT------IRPDEVTYVGVLSACTHNG 142
K+ K++ TW A+I GLA + F +RPD++T++GVLSAC H G
Sbjct: 379 KLPCKNEATWNALICGLAFNGRGHEAIRQFEVMRNEEGLRPDDITFIGVLSACVHAG 435
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
+V+ Y N G AR+ F +P RD V W AM+ Y R + +F +M + P
Sbjct: 157 LVTMYSNLGDPLAARRVFDGIPRRDVVSWNAMMKAYERAGMAADVARMFRDMIDEGAVAP 216
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
+E T+ +L A MY KCG++ +A+RV
Sbjct: 217 NEVTVAVVLAACRDAGDLVLGRWLEEWVRSAEIEVGSLVGSALVGMYEKCGEMTEARRVF 276
Query: 98 RKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVLSACTHNG 142
+ KD W AMI G A + F ++R PD++T VGVLSAC G
Sbjct: 277 DGIAHKDVVAWNAMITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVG 333
>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
Length = 763
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + V+++ ++SG ++G++ A + F + P RD V W+ ++ G EAL +
Sbjct: 449 MQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFY 508
Query: 61 PEMQTSNIRPDEF---TIVRILTAY------------------------------MYCKC 87
+M SNIRP E +++ L+ Y +YCKC
Sbjct: 509 KKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKC 568
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G++ AQ + M ++DK TW +I G A+++ + PD++T++GVL
Sbjct: 569 GEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVL 628
Query: 136 SACTH 140
SAC H
Sbjct: 629 SACNH 633
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 33/158 (20%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++ G+ +VD+A Q F MP ++ V W MI G++ +F EA+ LF
Sbjct: 193 MPVRNVVSWTAMIKGHFTAHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELF 252
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+ + +V+I+ A+ MYCK
Sbjct: 253 NSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKS 312
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
D+ +A+ KM +W AM+ G SD R
Sbjct: 313 LDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEAR 350
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 50/184 (27%)
Query: 1 MKNKDVISWTDIVSGYIN-------------------------------RGQVDIARQYF 29
M N+D ISW +++GYIN G +D AR F
Sbjct: 356 MNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAATALMSWFIDNGMLDKARDMF 415
Query: 30 AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89
MP+ D + T ++ GY++ +AL LF MQ + I + G
Sbjct: 416 YNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQ------GK 469
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+ +A ++ + +D TW+ ++ GLA + IRP E + V L +
Sbjct: 470 ITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSE-SVVSSLIS 528
Query: 138 CTHN 141
C N
Sbjct: 529 CLSN 532
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++S Y G++ IA+ F M +RD V W +I GY N + A+ +F M + + P
Sbjct: 560 SLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDP 619
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM--------------LRKDKFTWTAMIV--- 113
D+ T + +L+A + +E+A+ M D F MI
Sbjct: 620 DDITFLGVLSACNHMSL--LEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAE 677
Query: 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGNE 144
GL S PF PD + +LS C GN+
Sbjct: 678 GLVKSMPF---EPDSAIWTSLLSGCRLTGND 705
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ V SW ++ GYI ++D AR+ F M RD + W +MI+GY+ R +A L+
Sbjct: 325 MEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELY 384
Query: 61 PEMQTSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+M ++ TA M + G ++KA+ + M + D + T ++ G
Sbjct: 385 SKMTEKSLEA--------ATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKG 436
Query: 119 -------DPFPTIRPDE-VTYVGVLSACTHNGNET 145
D F ++ VTY ++S H G T
Sbjct: 437 GHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKIT 471
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 33/140 (23%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ ++ G+++ AR+ F MP RD V W ++ R A+ F EM+ RPD
Sbjct: 41 LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ L+A MY CG V ++VL
Sbjct: 101 HTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSCLEQVLD 160
Query: 99 KMLRKDKFTWTAMIVGLAIS 118
+ + W A+I GL ++
Sbjct: 161 GVESPNVALWNALISGLVMN 180
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+ +V +++ Y N G V Q + + LW A+I G + +R A F
Sbjct: 132 SSGNVFVGASLITMYANCGVVSCLEQVLDGVESPNVALWNALISGLVMNHRVGYARKAFD 191
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF 121
M N+ I TA+ +V+ A ++ + M K+ +W MI G + F
Sbjct: 192 RMPVRNVVSWTAMIKGHFTAH------EVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKF 245
Query: 122 P 122
Sbjct: 246 S 246
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 79/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+V++WT +S YI G + A + F++MP R+ V W MI GY + + L
Sbjct: 425 MANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELL 484
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M+ +PD T++ IL A MY KC
Sbjct: 485 SSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKC 544
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV-------GLAISDPF-----PTIRPDEVTYVGVL 135
G V +A+ V KM +D W AM+ GL D F + P+E+T V+
Sbjct: 545 GQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVI 604
Query: 136 SACTHNG 142
SAC+ G
Sbjct: 605 SACSRAG 611
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 50/188 (26%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +++ Y G++ +A + F +M ER+ V WTA+I + + EA L+ +M
Sbjct: 191 DVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQML 250
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+ I P+ T V +L + MYCKC V+
Sbjct: 251 QAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQ 310
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA---------ISDPFPTIR--------PDEVTYVGV 134
+A+ + +M ++D +W+AMI G A I + F + P++VT++ +
Sbjct: 311 EAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSI 370
Query: 135 LSACTHNG 142
L ACT +G
Sbjct: 371 LRACTAHG 378
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 72/179 (40%), Gaps = 45/179 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ +++ Y V A Q F +M RD V W++MI Y N +A F M
Sbjct: 90 DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+NI P+ T + IL A MY KCG++
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSAC 138
A V KM ++ +WTA+I A +++ F I P+ VT+V +L++C
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T ++ Y GQV AR F +M RD V W AM+ GY + EA+ LF M
Sbjct: 530 DTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRML 589
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVG--- 114
+ P+E T+ +++A + G V++ + + R M RK + ++G
Sbjct: 590 KERVSPNEITLTAVISA--CSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAG 647
Query: 115 -LAISDPFPT---IRPDEVTYVGVLSACTHNGN 143
L ++ F PD + +L AC + N
Sbjct: 648 RLQEAEEFIQSMPCEPDISVWHALLGACKSHNN 680
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99
+ +I+ + RF + + ++ + D + ++ Y K DV A++V R+
Sbjct: 59 YGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN--FYSKFEDVASAEQVFRR 116
Query: 100 MLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACTH 140
M +D TW++MI A + D F I P+ +T++ +L AC +
Sbjct: 117 MTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNN 169
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 324 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLF 383
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + I D +V IL A M+CKC
Sbjct: 384 TEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKC 443
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGV 134
G V +A + +++ KD +W +I G A+ P F ++ PD VT + V
Sbjct: 444 GCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINV 503
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 504 LSACTHMG 511
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+VD AR F +MPE+D V W M+DGY + +A LF
Sbjct: 262 MTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELF 321
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N+ + +++A YCK GD+E A+ + KM K+ TWT M+ A
Sbjct: 322 QRMPGRNV----VSWSTVVSA--YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGL 375
Query: 121 F------------PTIRPDEVTYVGVLSACTHNGN 143
I D + V +L+AC +G+
Sbjct: 376 VEEAGRLFTEMMDAAIELDVIAVVSILAACAESGS 410
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90
++ E+D V W +I G+ +AL LF +M+ PD T++ +L+A + G V
Sbjct: 456 EIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTH--MGLV 513
Query: 91 EKAQRVLRKM-----LRKDKFTWTAMI----VGLAISDPFPTIR-----PDEVTYVGVLS 136
E+ +R M ++ + M+ G I + I+ P+EV + +LS
Sbjct: 514 EEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLS 573
Query: 137 ACTHNGN 143
AC + N
Sbjct: 574 ACRLHKN 580
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ VI+WT +++GY+ G+V++A + F +M R V W AMI GY+ R + L LF M
Sbjct: 195 RSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM 254
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ ++P+ ++ +L MY KCGD+
Sbjct: 255 LETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDL 314
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
+ A + ++ RKD W AMI G A ++PD +T+V VL AC
Sbjct: 315 KDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLAC 374
Query: 139 THNG 142
H G
Sbjct: 375 NHAG 378
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SW ++S G + AR+ F+ MPE++ V W+AM+ GY+ A+ F
Sbjct: 130 MPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECF 189
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
++ T ++T YM K G VE A+R+ ++M + TW AMI G
Sbjct: 190 YAAPMRSV----ITWTAMITGYM--KFGRVELAERLFQEMSMRTLVTWNAMIAG 237
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + T +VS Y G + A + F Q+P +D V W AMI GY + ++AL LF E
Sbjct: 295 SSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDE 354
Query: 63 MQTSNIRPDEFTIVRILTA 81
M+ ++PD T V +L A
Sbjct: 355 MKKEGLKPDWITFVAVLLA 373
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+ +S+ +++ + + V AR +F MP +D W MI +V EA LF M
Sbjct: 103 NTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAM- 161
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P++ + Y CGD++ A + TWTAMI G
Sbjct: 162 -----PEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITG 206
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ SW +++GYI G+++ A++ F++MP RD V W+ MI G+ F E+ + F E+
Sbjct: 368 RNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFREL 427
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ +RP+E ++ +L+A MY +CG+V
Sbjct: 428 LRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNV 487
Query: 91 EKAQRVLRKMLRKDKF-TWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
A+ V M K +WT+MI GLA+ + PDE++++ +L A
Sbjct: 488 PMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYA 547
Query: 138 CTHNG 142
C+H G
Sbjct: 548 CSHAG 552
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V AR+ F +MP+ + V W A++ R N A +F +M N
Sbjct: 312 TTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRN-- 369
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
T ++ A Y K G++E A+R+ +M +D +W+ MIVG + + F
Sbjct: 370 ---HTSWNVMLA-GYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFR 425
Query: 122 ----PTIRPDEVTYVGVLSACTHNGNETF 146
+RP+EV+ GVLSAC+ +G F
Sbjct: 426 ELLRAEMRPNEVSLTGVLSACSQSGAFEF 454
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G V +AR F M E R V WT+MI G EA+ +F EM S + P
Sbjct: 477 LIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMP 536
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
DE + + +L Y G +++ + KM R
Sbjct: 537 DEISFISLL--YACSHAGLIKEGEGYFSKMKR 566
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+DV+++ ++ G + ++ AR+ F MP RD V W ++I GY ++N+ REA++LF E
Sbjct: 594 QRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDE 653
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M ++PD IV L+A Y KCG
Sbjct: 654 MIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGF 713
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSA 137
++ A + K FTW AMI GLA+ D F I+PD V+++ VL
Sbjct: 714 IDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVG 773
Query: 138 CTHNG 142
C+H+G
Sbjct: 774 CSHSG 778
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G +D A + F ++ W AMI G + F +M +S I+
Sbjct: 702 TGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIK 761
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD + + +L + G V +A+++ +M
Sbjct: 762 PDGVSFISVLVGCSH--SGLVGEARKLFDQM 790
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VS Y +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 252 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLF 311
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM + I D +V IL A M+CKC
Sbjct: 312 TEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKC 371
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGV 134
G V +A + +++ KD +W +I G A+ P F ++ PD VT + V
Sbjct: 372 GCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINV 431
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 432 LSACTHMG 439
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + +G+VD AR F +MPE+D V W M+DGY + +A LF
Sbjct: 190 MTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELF 249
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N+ + +++A YCK GD+E A+ + KM K+ TWT M+ A
Sbjct: 250 QRMPGRNV----VSWSTVVSA--YCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGL 303
Query: 121 F------------PTIRPDEVTYVGVLSACTHNGN 143
I D + V +L+AC +G+
Sbjct: 304 VEEAGRLFTEMMDAAIELDVIAVVSILAACAESGS 338
Score = 41.6 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90
++ E+D V W +I G+ +AL LF +M+ PD T++ +L+A + G V
Sbjct: 384 EIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTH--MGLV 441
Query: 91 EKAQRVLRKM-----LRKDKFTWTAMI----VGLAISDPFPTIR-----PDEVTYVGVLS 136
E+ +R M ++ + M+ G I + I+ P+EV + +LS
Sbjct: 442 EEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLS 501
Query: 137 ACTHNGN 143
AC + N
Sbjct: 502 ACRLHKN 508
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K V+ T +++GY+ G+V++A + F +M ++ V W +MI GY+ R + L +F M
Sbjct: 227 KSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM 286
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
S +RP+ ++ +L MYCKCGD+
Sbjct: 287 IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDL 346
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSAC 138
+ A ++ +M RKD +W AMI G L + D T++PD +T+V V+ AC
Sbjct: 347 DSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406
Query: 139 THNG 142
H G
Sbjct: 407 NHAG 410
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ SW ++SG+ GQ+ A F+ MPE++ V W+AMI GY+ A L+
Sbjct: 162 MPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELY 221
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
+ ++ + +LT YM K G VE A+R+ ++M K+ TW +MI G +
Sbjct: 222 KNVGMKSVVVE----TAMLTGYM--KFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCR 275
Query: 119 -----DPFPT-----IRPDEVTYVGVLSACT 139
F T +RP+ ++ VL C+
Sbjct: 276 AEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD + T ++S Y G +D A + F +MP +D + W AMI GY + R+AL LF +
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDK 386
Query: 63 MQTSNIRPDEFTIVRILTA 81
M+ ++PD T V ++ A
Sbjct: 387 MRNGTMKPDWITFVAVILA 405
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFPEM 63
DV+S ++ ++ ++ AR F +M R V W M+ GY +V + +EA LF ++
Sbjct: 72 DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
PD + +L Y+ + VE A KM KD +W +I G A
Sbjct: 132 P----EPDSVSYNIMLVCYL--RSYGVEAALAFFNKMPVKDIASWNTLISGFA 178
>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 483
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++ W ++ GY G++D AR F +MPER+ + W+ +IDGY+R EAL F
Sbjct: 133 MPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFF 192
Query: 61 PEMQTSNIRPDEFTIV---------------RILTAY------------------MYCKC 87
M I+PD V R L +Y MY KC
Sbjct: 193 QRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKC 252
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRP--DEVTYVGVL 135
G ++ A+ + M +K TW MIVGL + + T R D+++ + VL
Sbjct: 253 GRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVL 312
Query: 136 SACTHNG 142
++CTH G
Sbjct: 313 TSCTHAG 319
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 1 MKNKDVISWTDIVSGYIN-RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ +D SW ++ GY G VD AR+ F QMP+RD V W +MIDGY R R EA L
Sbjct: 101 MRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVL 160
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
F EM P+ I + Y + G+ +A ++MLR
Sbjct: 161 FEEM------PERNVISWSIVIDGYVRFGEPNEALEFFQRMLR 197
>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
Length = 686
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 32/171 (18%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ + EA ++F EM
Sbjct: 237 KNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEM 296
Query: 64 QTSNIR-PDEFTIVRILTAY-------------------MYCKCGDVEKAQRVLRKMLRK 103
+ + D + I+ A MY KC DV A+ + +M +
Sbjct: 297 RRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHR 356
Query: 104 DKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSACTHNG 142
D +WT++IVG LA+ D + ++P+EVT+VG++ AC+H G
Sbjct: 357 DVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVG 407
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y V A+ F++M RD V WT++I G + + +AL L+ +M + ++P+
Sbjct: 333 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 392
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAISD------- 119
E T V ++ Y G VEK + + + M +R +T ++ L S
Sbjct: 393 EVTFVGLI--YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 450
Query: 120 -----PFPTIRPDEVTYVGVLSACTHNG 142
PFP PDE T+ +LSAC G
Sbjct: 451 LIHTMPFP---PDEPTWAALLSACKRQG 475
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 34/141 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL-TLFPEMQTSNIRP 70
+V+ Y G A Q F +MP RD++ W +++ + N + L +S +RP
Sbjct: 112 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 171
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
D+F ++ A MY KCG + A+ V
Sbjct: 172 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 231
Query: 98 RKMLRKDKFTWTAMIVGLAIS 118
+ K+ +WTAM+ G A S
Sbjct: 232 DSIRVKNTISWTAMVSGYAKS 252
>gi|449479798|ref|XP_004155710.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Cucumis sativus]
Length = 376
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 45/185 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K D+++ ++ ++ G+ A++ F +MP RD V W ++I G ++ R+ EA F
Sbjct: 99 KQLDLVAMNLLIGNFMKIGECKFAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFR 158
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M TSNI+PD FT IL A Y KCG
Sbjct: 159 QMLTSNIQPDGFTFASILNACAQLGAPSNTHWVHAQMTQKKIELNSLLTCALIDAYSKCG 218
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
++ A+ + + D W MI GLAI ++ PD +T++GVL+
Sbjct: 219 SIQIAKEIFSNIPHSDTSVWNVMIKGLAIHGLAMDALSLFLRMEHESVLPDAITFLGVLT 278
Query: 137 ACTHN 141
AC H
Sbjct: 279 ACNHG 283
>gi|296086392|emb|CBI31981.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD+ T ++ Y N G +D+ + F Q+P++D VLW +IDGY + + +E+L+L
Sbjct: 220 MCRKDLNVATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLL 279
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ ++P+ T+V +L+A MYCKC
Sbjct: 280 QLMKREQVKPNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKC 339
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +EKA V +M KD +WTAMI G + RP+EVT++ VL
Sbjct: 340 GFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVL 399
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 400 NACSHGG 406
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G ++ A F +M +D WTAMI GY + + A+ +F M+
Sbjct: 325 DAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRME 384
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
RP+E T + +L A + G V + L KM+R+ F+
Sbjct: 385 VEGYRPNEVTFLAVLNACSH--GGMVVEGISFLEKMVREYGFS 425
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 23/131 (17%)
Query: 20 GQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78
G++ A Q F ++P + D V W ++ GYL+V LF EM R D + +
Sbjct: 176 GRIGDAHQLFDEIPPKIDLVSWNTLLGGYLQVPHPTMVTCLFGEM----CRKD----LNV 227
Query: 79 LTAY--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTI 124
TA MY G ++ ++ ++ +KD W +I G A SD +
Sbjct: 228 ATALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQV 287
Query: 125 RPDEVTYVGVL 135
+P+ T VG+L
Sbjct: 288 KPNSSTLVGLL 298
>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 802
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +VIS+T ++ GY+ G + AR+ F M RD V WTAMI GY + EA+ LF
Sbjct: 358 MADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELF 417
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M S P+ +T+ +L+ MY +
Sbjct: 418 RLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARS 477
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
G + A+RV R RK+ TWT+MIV LA ++PD +T+VGV
Sbjct: 478 GSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGV 537
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 538 LSACTHVG 545
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 87/217 (40%), Gaps = 77/217 (35%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++V +W ++S Y G++ AR FA+MPERD V WT M+ G RV RF EA+ +F +
Sbjct: 93 QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLD 152
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
M T + P +FT+ +L++ MY KCGD
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGD 212
Query: 90 VEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPFP----------------- 122
E A+ V +M + +W AM+ + L++ + P
Sbjct: 213 AETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQN 272
Query: 123 -----------------TIRPDEVTYVGVLSACTHNG 142
T+ PDE T VLSAC + G
Sbjct: 273 GLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLG 309
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 36/150 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V SW +VS + G++D+A F MP+R V W A+I GY + +AL F
Sbjct: 223 MPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFF 282
Query: 61 PEMQT-SNIRPDEFTIVRILTA---------------------------------YMYCK 86
M + S + PDEFTI +L+A MY K
Sbjct: 283 SRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAK 342
Query: 87 CGDVEKAQRVLRKMLRKDK--FTWTAMIVG 114
G VE A+ V+++ + D ++TA++ G
Sbjct: 343 SGSVENARGVMQQAVMADLNVISFTALLEG 372
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
IV+ Y G + AR+ F ++ R + V WT+MI + +A+ LF EM ++P
Sbjct: 470 IVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKP 529
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPT-- 123
D T V +L+A + G V++ +R +++ K + M+ LA + F
Sbjct: 530 DRITFVGVLSACTHV--GFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQ 587
Query: 124 -------IRPDEVTYVGVLSACTHNGN 143
+ PD + + +LSAC + N
Sbjct: 588 EFIQQMPVEPDAIAWGSLLSACRVHKN 614
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 16/99 (16%)
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
FREA LF E+ + + + FT +L+ +Y K G + A+ V +M +D +WT M+
Sbjct: 79 FREARRLFDEIPAA--QRNVFTWNSLLS--LYAKSGRLADARAVFAEMPERDPVSWTVMV 134
Query: 113 VGLAISDPFPT------------IRPDEVTYVGVLSACT 139
VGL F + P + T VLS+C
Sbjct: 135 VGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCA 173
>gi|356495350|ref|XP_003516541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g51320-like [Glycine max]
Length = 579
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 58/197 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++SW I++G++ G+++ A + F +MPER+ V W MI GYL+ A+ LF
Sbjct: 200 MLSRDLVSWNSIINGHMMVGELNAAHRLFDKMPERNLVTWNVMISGYLKGRNPGYAMKLF 259
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM +R + T+V + TA MYCKC
Sbjct: 260 REMGRLGLRGNARTMVCVATACGRSGRLKEAKSVHGSIVRMSLRSSLILDTALIGMYCKC 319
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-------------------------SDPFP 122
VE AQ V +M ++ +W MI+G I SD
Sbjct: 320 RKVEVAQIVFERMRERNLVSWNMMILGHCIRGSPEDGLDLFEVMISMGKMKHGVESDETL 379
Query: 123 TIRPDEVTYVGVLSACT 139
+ P+EVT++GVL AC
Sbjct: 380 RLLPNEVTFIGVLCACA 396
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
++ Y+ G V +AR F M RD V W ++I+G++ V A LF +M N+
Sbjct: 179 SLIHMYVCCGGVQLARVLFDGMLSRDLVSWNSIINGHMMVGELNAAHRLFDKMPERNL 236
>gi|296085295|emb|CBI29027.3| unnamed protein product [Vitis vinifera]
Length = 384
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ +SW ++ GY G +D ARQ F MP+RD V W++MIDG ++ + AL +F M
Sbjct: 21 RNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 80
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + +E T+V +L A MY KCG +
Sbjct: 81 RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAI 140
Query: 91 EKAQRVLRK--MLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
E+A V R M + D W +I GLA I PDE+TY+ + S
Sbjct: 141 EEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFS 200
Query: 137 ACTHNG 142
AC H G
Sbjct: 201 ACAHGG 206
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR------PDE--VTYVGV 134
MY CGD+ A++V +ML ++ +W AM+ G A + R PD V++ +
Sbjct: 1 MYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSM 60
Query: 135 LSACTHNGN 143
+ C G
Sbjct: 61 IDGCVKGGE 69
>gi|255594521|ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223520840|gb|EEF26277.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI++T ++ GY+ G + AR F + + D V WTAMI GY++ +A+ LF M
Sbjct: 271 NVIAFTALLDGYVKLGNITPARHIFDSLKDSDVVAWTAMIVGYVQNGLNDDAMELFRIMA 330
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
RP+ FT+ +L+ MY K G +
Sbjct: 331 KEGPRPNSFTLAAMLSVSSNVASLNHGKQIHASAIRSGENLSVSVGNALITMYAKAGSIT 390
Query: 92 KAQRVLRKMLR-KDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSAC 138
AQ+V + R KD +WT+MI+ L + F I+PD +TYVGVLSAC
Sbjct: 391 DAQQVFNLIQRNKDTVSWTSMIIALGQHGLGQESIELFEKMLALGIKPDHITYVGVLSAC 450
Query: 139 THNG 142
TH G
Sbjct: 451 THVG 454
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + + SW ++S +++ G+ D+A F QM ERD V W +MI GY + +EAL LF
Sbjct: 133 MRLRSISSWNIMISLHMHGGRADLALAQFEQMSERDVVTWNSMITGYSQHGFDKEALELF 192
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91
M +++PD FT+ IL+A C ++E
Sbjct: 193 SRMLEDSLKPDRFTLASILSA-----CANIE 218
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 58/145 (40%), Gaps = 33/145 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K SW I++GY G + A F ++P+RD V WT MI GY ++ RF A+ +F
Sbjct: 1 MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M + P +FT+ + + MY K
Sbjct: 61 VAMMKDKVLPTQFTVTNVFASCAALGALDIGKKIHSFVIKLGLSGCVPVANSLLNMYAKA 120
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI 112
GD A+ V +M + +W MI
Sbjct: 121 GDSVMAKIVFDRMRLRSISSWNIMI 145
>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
Length = 731
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ + V+++ ++SG ++G++ A + F + P RD V W+ ++ G EAL +
Sbjct: 417 MQKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFY 476
Query: 61 PEMQTSNIRPDEF---TIVRILTAY------------------------------MYCKC 87
+M SNIRP E +++ L+ Y +YCKC
Sbjct: 477 KKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKC 536
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G++ AQ + M ++DK TW +I G A+++ + PD++T++GVL
Sbjct: 537 GEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVL 596
Query: 136 SACTH 140
SAC H
Sbjct: 597 SACNH 601
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 33/158 (20%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++ G+ +VD+A Q F MP ++ V W MI G++ +F EA+ LF
Sbjct: 161 MPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELF 220
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+ + +V+I+ A+ MYCK
Sbjct: 221 NSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKS 280
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
D+ +A+ KM +W AM+ G SD R
Sbjct: 281 LDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEAR 318
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 22/153 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++S Y G++ IA+ F M +RD V W +I GY N + A+ +F M + + PD
Sbjct: 529 LISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPD 588
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM--------------LRKDKFTWTAMIV---G 114
+ T + +L+A + +E+A+ M D F MI G
Sbjct: 589 DITFLGVLSACNHMSL--LEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEG 646
Query: 115 LAISDPFPTIRPDEVTYVGVLSACTHNGNETFV 147
L S PF PD + +LS C GN+
Sbjct: 647 LVKSMPF---EPDSAIWTSLLSGCRLTGNDKLA 676
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 50/184 (27%)
Query: 1 MKNKDVISWTDIVSGYIN-------------------------------RGQVDIARQYF 29
M N+D ISW +++GYIN G +D AR F
Sbjct: 324 MNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAATALMSWFIDNGMLDKARDMF 383
Query: 30 AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89
MP+ D + T ++ GY++ +AL LF MQ + I + G
Sbjct: 384 YNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQ------GK 437
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+ +A ++ + +D TW+ ++ GLA + IRP E + V L +
Sbjct: 438 ITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNIRPSE-SVVSSLIS 496
Query: 138 CTHN 141
C N
Sbjct: 497 CLSN 500
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ V SW ++ GYI ++D AR+ F M RD + W +MI+GY+ R +A L+
Sbjct: 293 MEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELY 352
Query: 61 PEMQTSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+M ++ TA M + G ++KA+ + M + D + T ++ G
Sbjct: 353 SKMTEKSLEA--------ATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKG 404
Query: 119 -------DPFPTIRPDE-VTYVGVLSACTHNGNET 145
D F ++ VTY ++S H G T
Sbjct: 405 GHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKIT 439
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ ++ G+++ AR+ F MP RD V W ++ R A+ F EM+ RPD
Sbjct: 41 LMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFRPD 100
Query: 72 EFTIVRILTAYMYCKCGDVEK------AQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ L+A C +E ++VL + + W A+I GL ++
Sbjct: 101 HTSFSTALSA-----CARLEALEMGSCLEQVLDGVESPNVALWNALISGLVMN 148
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ GY N G ++ + F MPER+ W +I GY + R E L F
Sbjct: 116 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 175
Query: 61 PEM-QTSNIRPDEFTIVRILTAY----------------------------------MYC 85
M ++ P++ T+ +L+A MY
Sbjct: 176 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 235
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
KCG +E A V + + R+D +W MI GLA I PD+VT+VG
Sbjct: 236 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVG 295
Query: 134 VLSACTHNG 142
VL AC H G
Sbjct: 296 VLCACKHMG 304
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+ WT +++GY+ + AR+YF PERD VLW MI GY+ + EA +LF
Sbjct: 54 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 113
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
+M ++ + +L Y GD+E +RV M ++ F+W +I G A
Sbjct: 114 DQMPCRDV----MSWNTVLEG--YANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGR 167
Query: 117 ISDPFPTIR---------PDEVTYVGVLSACTHNGNETF 146
+S+ + + P++ T VLSAC G F
Sbjct: 168 VSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 206
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 558 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 617
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ +++ D +V IL A M+CKC
Sbjct: 618 AQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 677
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V +A V + ++KD +W ++I G A+ + F ++ PD VT + V
Sbjct: 678 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 737
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 738 LSACTHMG 745
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + G++ R+ F +MPE+D V W ++DGY + A LF
Sbjct: 496 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELF 555
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---I 117
M P+ + YCK GD+E A+ + KM K+ TWT M+ A +
Sbjct: 556 QRM------PERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGL 609
Query: 118 SDPF---------PTIRPDEVTYVGVLSACTHNGN 143
D ++ D V +L+AC +G+
Sbjct: 610 VDEAGKLFAQMKEASVELDVAAVVSILAACAESGS 644
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ++ Y G AR+ F +MPERD V W + +R LF EM
Sbjct: 468 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 527
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-------- 115
P++ T+ Y K G+VE A + ++M ++ +W+ M+ G
Sbjct: 528 ------PEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEM 581
Query: 116 --AISDPFPTIRPDEVTYVGVLSACTHNG 142
I D P+ + VT+ ++SAC G
Sbjct: 582 ARVIFDKMPS--KNLVTWTIMVSACAQKG 608
Score = 40.0 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93
++D V W ++I G+ +AL LF +M+ PD T++ +L+A + G V++
Sbjct: 693 QKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTH--MGFVDEG 750
Query: 94 QRVLRKMLRKDKFT-----WTAMI------------VGLAISDPFPTIRPDEVTYVGVLS 136
+R M R + MI V L S P+ P+EV + +LS
Sbjct: 751 RRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW---EPNEVIWGSLLS 807
Query: 137 ACTHNGN 143
AC + N
Sbjct: 808 ACRLHKN 814
>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g15340, mitochondrial; Flags: Precursor
gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 52/194 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K V+SWT ++ + ++ R+ F +MPER+ V WT M+ GYL RE L L
Sbjct: 172 LEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELL 231
Query: 61 PEM---------------------QTSNI------------------RPDEFTIVRILTA 81
EM Q+ N+ + V + TA
Sbjct: 232 AEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTA 291
Query: 82 Y--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT----IRPDE 128
MY KCG+++ + V R M +++ TW A+ GLA+ D FP ++PD+
Sbjct: 292 LVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDD 351
Query: 129 VTYVGVLSACTHNG 142
+T+ VLSAC+H+G
Sbjct: 352 LTFTAVLSACSHSG 365
Score = 44.7 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 35/132 (26%)
Query: 16 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y + G++ A++ F ++P E+D V WT ++ + R ++ LF EM+ + D+
Sbjct: 53 YASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDV 112
Query: 74 TIV-------------------------RILTAY--------MYCKCGDVEKAQRVLRKM 100
++V +LT+ MY KCG V + +R+ ++
Sbjct: 113 SVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEEL 172
Query: 101 LRKDKFTWTAMI 112
K +WT ++
Sbjct: 173 EEKSVVSWTVVL 184
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFP 61
KDV W +++GY G++D AR MP R+ V WT +I GY + R EA+ +F
Sbjct: 180 KDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQ 239
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M N+ PDE T++ +L+A MY K G
Sbjct: 240 RMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSG 299
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
++ KA V + ++ TWT +I GLA +RP++VT++ +LS
Sbjct: 300 NITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILS 359
Query: 137 ACTHNG 142
AC+H G
Sbjct: 360 ACSHVG 365
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A F + ER+ V WT +I G EAL +F M + +RP+
Sbjct: 291 VIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPN 350
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+ T + IL+A + G V+ +R+ M K
Sbjct: 351 DVTFIAILSACSH--VGWVDLGKRLFNSMRSK 380
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 34/150 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV SWT +V+GY G+++IAR++F MP+R+ V W AMI GY + N+ ++A+ LF
Sbjct: 420 MGTKDVFSWTSMVNGYAKTGELEIARKFFDDMPKRNVVSWNAMIAGYSQNNQPKKAIVLF 479
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
M + P E T+V +L+A MY K
Sbjct: 480 HHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERKQKGTSVIIANALIDMYAK 539
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
CG ++ A RV M +D +W +MI A
Sbjct: 540 CGVIDAAARVFNGMPGRDLVSWNSMIAACA 569
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 33/147 (22%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + +AR+ F + P RD V WT+MIDGY + + +AL LF M S++ P+
Sbjct: 299 LIHFYSVHGCLVLARKVFDETPARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPN 358
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T++ +L+A MY KCG + A+ +
Sbjct: 359 EVTMISVLSACSQKGDLSLGKSIHEYVRRKNLNLSVNLMNAILDMYVKCGCLVAAREIFD 418
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPTIR 125
M KD F+WT+M+ G A + R
Sbjct: 419 SMGTKDVFSWTSMVNGYAKTGELEIAR 445
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K VI ++ Y G +D A + F MP RD V W +MI ++AL +F
Sbjct: 523 KGTSVIIANALIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMFG 582
Query: 62 EMQTSNIRPDEFT 74
+M +PD+ T
Sbjct: 583 QMIHEGFKPDDIT 595
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 45/169 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A F Q+ + +W MI G+ L+ F +M + D + V L
Sbjct: 206 GDIRHAHLLFNQIEYPNTYIWNTMIRGFSNAKMPVMGLSFFWQMVRERVEMDTRSFVFAL 265
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A + Y G + A++V + +D
Sbjct: 266 KASEQFLTALEGESIHCAIWKIGFPCALLVQNGLIHFYSVHGCLVLARKVFDETPARDVV 325
Query: 107 TWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+WT+MI G + D + + P+EVT + VLSAC+ G+
Sbjct: 326 SWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGD 374
>gi|449523047|ref|XP_004168536.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 502
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 26/146 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT ++S Y G + AR +F +MP+R+ V W +MI Y++ F+EAL LF
Sbjct: 240 MPEKNVVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLF 299
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKC----GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M + I PD +T V + +A C G + A ++ M ++
Sbjct: 300 NQMLSEGITPDGYTFVSVFSA---CSSLALHGQAQDALKLFSLMQKQG------------ 344
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNG 142
++P++ T++G L AC+H G
Sbjct: 345 -------LKPNDFTFLGALFACSHGG 363
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ V W ++ Y + G V A++ F M +RD V W MI GY++V +A LF +M
Sbjct: 181 RSVEVWNRMILRYTSTGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKM 240
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-- 121
N+ + +++A Y K GD+ A+ KM +++ +W +MI F
Sbjct: 241 PEKNV----VSWTSMISA--YAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQE 294
Query: 122 ----------PTIRPDEVTYVGVLSACT 139
I PD T+V V SAC+
Sbjct: 295 ALDLFNQMLSEGITPDGYTFVSVFSACS 322
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 36/175 (20%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV +V Y ++D A+ F +M ER V W +ID ++R F AL LF E
Sbjct: 160 DSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGE 219
Query: 63 MQTSNIRPDEFTIVRILTAY----------------------MYCKCGDVEKAQRVLRKM 100
MQ PD +TI I A MYCKCG +E A ++ +M
Sbjct: 220 MQKF-FEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDMYCKCGSLELALQLFHRM 278
Query: 101 LRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
++D +W +MI+G + + P+ +T+VGVLSAC H G
Sbjct: 279 PKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGG 333
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G D A++ F +MP R+ V WTA+I GY++ F + + +F EM
Sbjct: 239 DVFIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEML 298
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S++ P+E T+ +L+A Y KCG +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLE 358
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
+A V ++ K+ +TWTAMI G A D F T + P+EVT++ VLSAC
Sbjct: 359 EAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACA 418
Query: 140 HNG 142
H G
Sbjct: 419 HGG 421
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ ++SGY N G + + F ++D V WTAMIDG++R + EA+T F E
Sbjct: 135 DSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVE 194
Query: 63 MQTSNIRPDEFTIVRILTAY----------------------------------MYCKCG 88
M+ S + +E T+V +L A MY KCG
Sbjct: 195 MKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCG 254
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
+ AQ+V +M ++ TWTA+I G F + P+E T VLS
Sbjct: 255 CYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLS 314
Query: 137 ACTHNG 142
AC H G
Sbjct: 315 ACAHVG 320
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A F ++ E++ WTAMI+G+ A+ LF M +S++
Sbjct: 345 TTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVS 404
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
P+E T + +L+A + G VE+ +R+ M K++F
Sbjct: 405 PNEVTFIVVLSACAH--GGLVEEGRRLFLSM--KERF 437
>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Vitis vinifera]
Length = 539
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ +SW ++ GY G +D ARQ F MP+RD V W++MIDG ++ + AL +F M
Sbjct: 176 RNSVSWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERM 235
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + +E T+V +L A MY KCG +
Sbjct: 236 RVVGPKANEVTMVSVLCACAHLGALEQGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAI 295
Query: 91 EKAQRVLRK--MLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLS 136
E+A V R M + D W +I GLA + F ++ PDE+TY+ + S
Sbjct: 296 EEAIAVFRGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFS 355
Query: 137 ACTHNG 142
AC H G
Sbjct: 356 ACAHGG 361
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 41/164 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +D + + F Q+P W ++I G+ + ++++F +M + PD T I
Sbjct: 60 GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIA 119
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A +MY CGD+ A++V +ML ++
Sbjct: 120 KAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSV 179
Query: 107 TWTAMIVGLAISDPFPTIR------PDE--VTYVGVLSACTHNG 142
+W AM+ G A + R PD V++ ++ C G
Sbjct: 180 SWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGG 223
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ +W +++GY G ++ A + F MP R V WT MI GY + + +AL +F
Sbjct: 71 MTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMF 130
Query: 61 PEMQT-SNIRPDEFTIVRILTA---------------------------------YMYCK 86
+M+ +RP+E TI + +A MY +
Sbjct: 131 LKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYAR 190
Query: 87 CGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
CG ++ A+ V ++ R++ +W +M++GLA+ I PD+VT+VG
Sbjct: 191 CGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVG 250
Query: 134 VLSACTHNG 142
++ ACTH G
Sbjct: 251 LILACTHGG 259
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 16 YINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74
Y G++D AR F ++ +R + W +M+ G R EAL L+ +M I PD+ T
Sbjct: 188 YARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVT 247
Query: 75 IVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA--ISDPFPTI- 124
V ++ A + G V K ++ + M + + + ++G A + + + +
Sbjct: 248 FVGLILACTH--GGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVK 305
Query: 125 ----RPDEVTYVGVLSACTHNGNETFV 147
+PD V + +L AC+ + N F
Sbjct: 306 SMPMKPDSVIWGTLLGACSFHSNVEFA 332
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 44/175 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y+ G +D AR+ F ++PE++ V+W ++I GY ++ E + L EM SN++PD
Sbjct: 249 LINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPD 308
Query: 72 EFTIVRILTAY--------------------------------MYCKCGDVEKAQRVLRK 99
FT+ +L+A MY KCG + A++V +
Sbjct: 309 RFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAARKVFDQ 368
Query: 100 MLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
M ++ TW A++ G A + RPD +T++ VL AC H+G
Sbjct: 369 MNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSG 423
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T ++ Y G + AR+ F QM ER+ W A++ GY + A+ LF EM+
Sbjct: 342 DVFIGTALIDMYAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMR 401
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA- 116
S RPD T + +L A + G VE ++ ML R + + ++G A
Sbjct: 402 ESGARPDSITFLAVLHACAH--SGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAG 459
Query: 117 -ISDPFPTIR-----PDEVTYVGVLSACTHNGN 143
+ + I+ P+ V + +LSAC+ +GN
Sbjct: 460 LLQEARELIKMMVVEPNVVVWGALLSACSIHGN 492
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 47/180 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNI 68
+ +++ Y+ G++ A+Q F + +D V W A+I GY R ++ +F EM + +
Sbjct: 144 SSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEV 203
Query: 69 RPDEFTIVRILTA---------------YM-------------------YCKCGDVEKAQ 94
RP+E T++ ++ A YM Y KCG ++ A+
Sbjct: 204 RPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGAR 263
Query: 95 RVLRKMLRKDKFTWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACTHNG 142
++ ++ K+ W ++I G L ++PD T GVLSAC G
Sbjct: 264 KLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMG 323
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 47/181 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT-SNI 68
T I++ +++ +D A Q F Q E D ++ AMI Y A++++ +M+ NI
Sbjct: 42 TKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNI 101
Query: 69 RPDEFT-----------------------IVRI---LTAYM-------YCKCGDVEKAQR 95
D++T IVRI L ++ Y CG++ AQ+
Sbjct: 102 LGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQ 161
Query: 96 VLRKMLRKDKFTWTAMIVGLA----ISDPFPT---------IRPDEVTYVGVLSACTHNG 142
V + KD W A+I G A + D F +RP+E T +G++ AC +
Sbjct: 162 VFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESK 221
Query: 143 N 143
N
Sbjct: 222 N 222
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V++WT +VSGY G+VD+AR+ F MPER+ V WTAM+ GY R REA +LF
Sbjct: 205 MPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
M P + +V + G+V+KA+RV + M +D TW+AMI
Sbjct: 265 DAM------PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMI 310
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+V+SWT ++ G + G+VD AR+ F MPE+D V T MI GY R EA LF
Sbjct: 143 MPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
EM N+ T +++ Y + G V+ A+++ M +++ +WTAM++G S
Sbjct: 203 DEMPKRNV----VTWTAMVSG--YARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHS 254
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 51/191 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V+ +++ G+ G+VD AR+ F M ERD W+AMI Y R EAL LF
Sbjct: 267 MPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLF 326
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
MQ + + +++ +L+ MY KC
Sbjct: 327 RRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKC 386
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---------------ISDPFPTIRPDEVTYV 132
G++ +A++V + KD W +MI G + S P PD+VT++
Sbjct: 387 GNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVP---PDDVTFI 443
Query: 133 GVLSACTHNGN 143
GVLSAC+++G
Sbjct: 444 GVLSACSYSGK 454
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 33/175 (18%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW ++SG+I G + AR+ F MP+R+ V WT+M+ GY+R EA LF
Sbjct: 81 MPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLF 140
Query: 61 PEMQTSNI-------------------------RPDEFTIVRILTAYMYCKCGDVEKAQR 95
M N+ P++ + YC+ G +++A+
Sbjct: 141 WHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARA 200
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFPTIRP--------DEVTYVGVLSACTHNG 142
+ +M +++ TWTAM+ G A + R +EV++ +L TH+G
Sbjct: 201 LFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSG 255
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++ V SW +V+ Y Q A F +MP+R+ V W +I G+++ EA +F
Sbjct: 50 LPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVF 109
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
M PD + Y + GDV +A+R+ M K+ +WT M+ GL
Sbjct: 110 DTM------PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGL 158
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ + +++ Y+ G + A+Q F + P +D V+W +MI GY + EAL +F +
Sbjct: 370 DQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHD 429
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGL 115
M +S + PD+ T + +L+A Y G V++ + M K + + ++G
Sbjct: 430 MCSSGVPPDDVTFIGVLSACSY--SGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGR 487
Query: 116 A--------ISDPFPTIRPDEVTYVGVLSAC-TH 140
A + + P + PD + + +L AC TH
Sbjct: 488 ADQVNEAMKLVEKMP-MEPDAIVWGALLGACRTH 520
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + AR+ F + E D VLWT+MI GY + ALTL+ MQ I
Sbjct: 354 TALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIM 413
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P E T+ +L A MY KCG +E V
Sbjct: 414 PHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLV 473
Query: 97 LRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACTHNG 142
R+M +D TW AMI GL+ + T +PD VT+V VLSAC+H G
Sbjct: 474 FRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMG 531
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 45/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y G +D A + F ++D + W+AMI GY + EAL LF M + +P
Sbjct: 255 LVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPS 314
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT V ++ A MY KCG + A++
Sbjct: 315 EFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFD 374
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
+ D WT+MI G A + T I P E+T VL AC+
Sbjct: 375 YLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACS 427
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +++ Y G + AR+ F +PER+ V W +I GY EA LF M+
Sbjct: 147 DVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMR 206
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
D+F +L+A MY KCG ++
Sbjct: 207 REEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLD 266
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-ISDPFPTI-----------RPDEVTYVGVLSACT 139
A + KD TW+AMI G A D + +P E T+VGV++AC+
Sbjct: 267 DALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACS 326
Query: 140 HNG 142
G
Sbjct: 327 DIG 329
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ F +MP RD + W AMI G + +AL LF E++ +PD T
Sbjct: 461 YAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTF 520
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
V +L+A + G VE+ + R ML D+F
Sbjct: 521 VNVLSACSH--MGLVERGKVYFRMML--DEF 547
>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
Length = 653
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDVISWT IV+ Y + A + FA P +D V WTAM+ GY + +AL F
Sbjct: 208 MVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAF 267
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + + DE ++ ++A MY KC
Sbjct: 268 EQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKC 327
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF---------PTIRPDEVTYVGV 134
G +++A RV M K+ +T+++MIVGLA +D + P+ VT++GV
Sbjct: 328 GLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGV 387
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 388 LTACSHAG 395
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W ++ GY G V+ A F QMP +D + WT MI Y + ++++AL ++
Sbjct: 230 MPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIY 289
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + I PDE T+ + +A MY KC
Sbjct: 290 SEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 349
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++ + + K+ K+ + W A+I GLA+ I P+ VT++ +L
Sbjct: 350 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 409
Query: 136 SACTHNG 142
SACTH G
Sbjct: 410 SACTHAG 416
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y + AR+ F +M ERD WTAM+ RV A LF EM
Sbjct: 177 TALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEM------ 230
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISD 119
P+ T Y + G+VE A+ + +M KD +WT MI LAI
Sbjct: 231 PERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYS 290
Query: 120 P--FPTIRPDEVTYVGVLSACTHNG 142
I PDEVT V SAC H G
Sbjct: 291 EMRLNGIIPDEVTMSTVASACAHIG 315
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + ++S Y G VD A + F +MP+R+ V WTAM+ GY + R EA+ F EM
Sbjct: 151 RDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEM 210
Query: 64 -QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ + ++P+E T+ +L A MY KCG
Sbjct: 211 WERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGS 270
Query: 90 VEKAQRVLRKMLR-KDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
+ +A +V + + R +D +W +MI+ A+ + ++PD +T+VGV+
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVIL 330
Query: 137 ACTHNG 142
ACTH G
Sbjct: 331 ACTHGG 336
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D L +A++ Y + EA +F E+ D +L+AY K G V+ A++
Sbjct: 121 DPFLSSALVSFYAKSKLLVEARKVFDELTCR----DTAVYNALLSAY--AKGGLVDSAEK 174
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYVGVLSACTHNG 142
+ +M ++ +WTAM+ G A + + F ++P+E+T VL AC G
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + ++S Y G VD A + F +MP+R+ V WTAM+ GY + R EA+ F EM
Sbjct: 151 RDTAVYNALLSAYAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEM 210
Query: 64 -QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ + ++P+E T+ +L A MY KCG
Sbjct: 211 WERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGS 270
Query: 90 VEKAQRVLRKMLR-KDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLS 136
+ +A +V + + R +D +W +MI+ A+ + ++PD +T+VGV+
Sbjct: 271 IRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVIL 330
Query: 137 ACTHNG 142
ACTH G
Sbjct: 331 ACTHGG 336
Score = 38.1 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D L +A++ Y + EA +F E+ D +L+AY K G V+ A++
Sbjct: 121 DPFLSSALVSFYAKSKLLVEARKVFDELTCR----DTAVYNALLSAY--AKGGLVDSAEK 174
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-------DPF------PTIRPDEVTYVGVLSACTHNG 142
+ +M ++ +WTAM+ G A + + F ++P+E+T VL AC G
Sbjct: 175 LFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVG 234
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ GY N G ++ + F MPER+ W +I GY + R E L F
Sbjct: 63 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 122
Query: 61 PEM-QTSNIRPDEFTIVRILTAY----------------------------------MYC 85
M ++ P++ T+ +L+A MY
Sbjct: 123 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 182
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
KCG +E A V + + R+D +W MI GLA I PD+VT+VG
Sbjct: 183 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVG 242
Query: 134 VLSACTHNG 142
VL AC H G
Sbjct: 243 VLCACKHMG 251
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+ WT +++GY+ + AR+YF PERD VLW MI GY+ + EA +LF
Sbjct: 1 MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
+M ++ + +L Y GD+E +RV M ++ F+W +I G A
Sbjct: 61 DQMPCRDV----MSWNTVLEG--YANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGR 114
Query: 117 ISDPFPTIR---------PDEVTYVGVLSACTHNGNETF 146
+S+ + + P++ T VLSAC G F
Sbjct: 115 VSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 153
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 251 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 310
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ +++ D +V IL A M+CKC
Sbjct: 311 AQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 370
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V +A V + ++KD +W ++I G A+ + F ++ PD VT + V
Sbjct: 371 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 430
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 431 LSACTHMG 438
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + G++ R+ F +MPE+D V W ++DGY + A LF
Sbjct: 189 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELF 248
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---I 117
M P+ + YCK GD+E A+ + KM K+ TWT M+ A +
Sbjct: 249 QRM------PERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGL 302
Query: 118 SDPF---------PTIRPDEVTYVGVLSACTHNGN 143
D ++ D V +L+AC +G+
Sbjct: 303 VDEAGKLFAQMKEASVELDVAAVVSILAACAESGS 337
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ++ Y G AR+ F +MPERD V W + +R LF EM
Sbjct: 161 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 220
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-------- 115
P++ T+ Y K G+VE A + ++M ++ +W+ M+ G
Sbjct: 221 ------PEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEM 274
Query: 116 --AISDPFPTIRPDEVTYVGVLSACTHNG 142
I D P+ + VT+ ++SAC G
Sbjct: 275 ARVIFDKMPS--KNLVTWTIMVSACAQKG 301
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 22/127 (17%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93
++D V W ++I G+ +AL LF +M+ PD T++ +L+A + G V++
Sbjct: 386 QKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTH--MGFVDEG 443
Query: 94 QRVLRKMLRKDKFT-----WTAMI------------VGLAISDPFPTIRPDEVTYVGVLS 136
+R M R + MI V L S P+ P+EV + +LS
Sbjct: 444 RRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW---EPNEVIWGSLLS 500
Query: 137 ACTHNGN 143
AC + N
Sbjct: 501 ACRLHKN 507
>gi|326522570|dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G++ AR+ F + +D V W A+I GY + +EA++LF M+ + RPD
Sbjct: 274 LVGMYEKCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPD 333
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+ T+V +L+A MY KCGD+ +A +V
Sbjct: 334 KITLVGVLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCGDLTRAIQVFE 393
Query: 99 KMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVTYVGVLSACTHNG 142
K+ K++ +W A+I GLA + +RPD++T++GVLSAC H G
Sbjct: 394 KLPCKNEASWNALICGLAFNGRGQEAIRQFELMRKQEGLRPDDITFIGVLSACVHAG 450
Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 29/161 (18%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMID----------GYLRVNRF 53
+DV+SW ++ Y G D A + F M V A+ G L + R+
Sbjct: 195 RDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVVLAACRDAGDLALGRW 254
Query: 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
E M+ ++V MY KCG++ +A+RV + KD W A+I
Sbjct: 255 LEEWVKSVGMEVG-------SLVGSALVGMYEKCGEMAEARRVFDAIAHKDNVAWNALIT 307
Query: 114 GLA---ISDPFPTI---------RPDEVTYVGVLSACTHNG 142
G A +S ++ RPD++T VGVLSAC G
Sbjct: 308 GYAQNGMSKEAISLFHSMRQAGARPDKITLVGVLSACAAVG 348
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 45/182 (24%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
+ + T +V Y G AR+ F + E D VLWT++I GY++ + EAL+++ MQ
Sbjct: 349 IYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQM 408
Query: 66 SNIRPDEFTIVRILTA---------------------------------YMYCKCGDVEK 92
I P+E T+ +L A MY KCG +E+
Sbjct: 409 RKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEE 468
Query: 93 AQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTH 140
+ R+ML++D +W AMI GL+ + + F +R PD +T+V VLSAC+H
Sbjct: 469 GVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSH 528
Query: 141 NG 142
G
Sbjct: 529 MG 530
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V+ Y G V AR+ F +MPER+ V WT MI GY +EAL +F M+
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMR 205
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+EF +L+A MY KCG++
Sbjct: 206 LVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLN 265
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-ISDPFPTIR-----------PDEVTYVGVLSACT 139
+ + K+ TW+A+I G + D ++ P E T VGVL AC+
Sbjct: 266 YSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACS 325
Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 45/174 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y G ++ + F +++ + W+A+I GY + +AL LF +M + P
Sbjct: 254 LVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPS 313
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
EFT+V +L A MY K G A++
Sbjct: 314 EFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFD 373
Query: 99 KMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACTH 140
+L D WT++I G + I P+E+T VL AC++
Sbjct: 374 FLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSN 427
>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
gi|194692242|gb|ACF80205.1| unknown [Zea mays]
gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
Length = 590
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 64/220 (29%), Positives = 84/220 (38%), Gaps = 78/220 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQ--VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
M KD SW ++ GY +G VD AR+ F QMPERD V W +MIDGY R R EA +
Sbjct: 207 MPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARS 266
Query: 59 LFPEMQTSNI-------------------------------RPDEFTIV----------- 76
LF EM N+ RPD V
Sbjct: 267 LFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGA 326
Query: 77 ----RILTAY------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
R L +Y MY KCG ++ A + M + TW MIVG
Sbjct: 327 LEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVG 386
Query: 115 LAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
L ++ D+++ +G+L+ACTH G
Sbjct: 387 LGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAG 426
Score = 48.5 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ T ++ Y+ G +D+A F M ER V W MI G +A+TLF M+
Sbjct: 345 DVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRME 404
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104
++ D+ +++ +LTA + G V + + +M +KD
Sbjct: 405 AESVAVDDLSVLGMLTACTH--AGLVSEGLEIFHRM-KKD 441
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ +WT IVSGY G ++ A + F QMPE++ V W+A+I GY R + EAL F +M
Sbjct: 259 KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM 318
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
I P+++T L A MY KCG +
Sbjct: 319 MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGML 378
Query: 91 EKAQRVLRKMLRK-DKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGVLSA 137
E + V M K D W MI LA +D + ++PD +T++ +LSA
Sbjct: 379 EASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSA 438
Query: 138 CTHNG 142
C+H+G
Sbjct: 439 CSHSG 443
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G V+ AR+ F +M E+D V W ++ Y + F EA+ L+
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLY 183
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
+ + ++ + F+ +L + Y KC
Sbjct: 184 RDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKC 243
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G++ A+ + +ML KD WT ++ G A
Sbjct: 244 GEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 57/190 (30%)
Query: 1 MKNKDVISWTDIVSGYINRG-----------------------------------QVDIA 25
M KDV+SW IV Y +G ++ +A
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLA 214
Query: 26 RQYFAQMPERDY----VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+Q Q+ + VL ++++D Y + R A TLF EM +I TIV
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWT-TIVS---- 269
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEV 129
Y K GD+ A + +M K+ +W+A+I G A + D F I P++
Sbjct: 270 -GYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQY 328
Query: 130 TYVGVLSACT 139
T+ L AC
Sbjct: 329 TFSSCLCACA 338
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 18/156 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ I + ++ Y G ++ + F M ++D V+W MI + +A+ +F +M
Sbjct: 361 NTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDM 420
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAIS 118
S ++PD T + IL+A + G V++ R + M + D+ ++ +I L +
Sbjct: 421 VESGLKPDRITFIVILSACSH--SGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRA 478
Query: 119 DPFPTI---------RPDEVTYVGVLSAC-THNGNE 144
F + +PD+ + +L C HN E
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIE 514
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ +WT IVSGY G ++ A + F QMPE++ V W+A+I GY R + EAL F +M
Sbjct: 259 KDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM 318
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
I P+++T L A MY KCG +
Sbjct: 319 MKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGML 378
Query: 91 EKAQRVLRKMLRK-DKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGVLSA 137
E + V M K D W MI LA +D + ++PD +T++ +LSA
Sbjct: 379 EASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSA 438
Query: 138 CTHNG 142
C+H+G
Sbjct: 439 CSHSG 443
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G V+ AR+ F +M E+D V W ++ Y + F EA+ L+
Sbjct: 124 MSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLY 183
Query: 61 PEMQTSNIRPDEFTIVRILTAYM---------------------------------YCKC 87
+ + ++ + F+ +L + Y KC
Sbjct: 184 RDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKC 243
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G++ A+ + +ML KD WT ++ G A
Sbjct: 244 GEMRCARTLFDEMLVKDIHAWTTIVSGYA 272
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 57/190 (30%)
Query: 1 MKNKDVISWTDIVSGYINRG-----------------------------------QVDIA 25
M KDV+SW IV Y +G ++ +A
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLA 214
Query: 26 RQYFAQMPERDY----VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+Q Q+ + VL ++++D Y + R A TLF EM +I TIV
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWT-TIVS---- 269
Query: 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEV 129
Y K GD+ A + +M K+ +W+A+I G A + D F I P++
Sbjct: 270 -GYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQY 328
Query: 130 TYVGVLSACT 139
T+ L AC
Sbjct: 329 TFSSCLCACA 338
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ I + ++ Y G ++ + F M ++D V+W MI + +A+ +F +M
Sbjct: 361 NTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDM 420
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAIS 118
S ++PD T + IL+A + G V++ R + M + D+ + +I L +
Sbjct: 421 VESGLKPDRITFIVILSACSH--SGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRA 478
Query: 119 DPFPTI---------RPDEVTYVGVLSAC-THNGNE 144
F + +PD+ + +L C HN E
Sbjct: 479 GCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIE 514
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 63/186 (33%)
Query: 20 GQVDIARQYFAQMPERDYV------------------LWTAMIDGYLRVNRFREALTLFP 61
G + AR+ F +MPERD V WTAMIDG +R AL +F
Sbjct: 179 GAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFR 238
Query: 62 EMQTSNIRPDEFTIVRILTA---------------------------------YMYCKCG 88
MQ ++ P+E TIV +L+A MY +CG
Sbjct: 239 NMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCG 298
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPTIR--------PDEVTYVGVLS 136
D+++AQRV +M K+ T+ +MI+G A+ + R P VT+VGVL+
Sbjct: 299 DIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLN 358
Query: 137 ACTHNG 142
AC+H G
Sbjct: 359 ACSHGG 364
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 72/188 (38%), Gaps = 63/188 (33%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
N + A + F+ + L+TA+IDG + + + + L+ +M S++ PD + +
Sbjct: 76 NLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTS 135
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR-- 102
+L A +Y KCG E A+RV +M
Sbjct: 136 VLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERD 195
Query: 103 ----------------KDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
KD WTAMI GL + + F ++ P+EVT V V
Sbjct: 196 VVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCV 255
Query: 135 LSACTHNG 142
LSAC+ G
Sbjct: 256 LSACSELG 263
Score = 42.0 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G +D A++ F QM E++ + + +MI G+ + EA+ LF + P
Sbjct: 290 LINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPS 349
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD-----KFTWTAMIVGL-----AISDPF 121
T V +L A C G + + + + KD + +V L + + +
Sbjct: 350 SVTFVGVLNA---CSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAY 406
Query: 122 PTIR-----PDEVTYVGVLSACTHNGN 143
IR PD V +LSAC +GN
Sbjct: 407 SFIRMMKVAPDHVMLGALLSACKIHGN 433
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 45/179 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+++ +++++ Y G+VD AR F ++P++D + WT MI GY + R +A LF +M
Sbjct: 255 DLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDML 314
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N++PD +TI ++++ MYCKCG
Sbjct: 315 RRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTL 374
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
A+ + M ++ TW AMI+G A + +PD +T+VGVLSAC
Sbjct: 375 DARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSAC 433
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G +D AR F M +++ V W MI GY+++ E + LF EMQ S ++PD T+
Sbjct: 200 YAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTV 259
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPF-PT 123
+L AY +CG V+ A+ + K+ +KD+ WT MIVG A D
Sbjct: 260 SNVLNAYF--RCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRN 317
Query: 124 IRPDEVTYVGVLSACT 139
++PD T ++S+C
Sbjct: 318 VKPDSYTISSMVSSCA 333
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 45/182 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW ++S Y G V+ F QMP RD V + +I + +AL +
Sbjct: 84 MTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVL 143
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +P +++ V L A MY KC
Sbjct: 144 VRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKC 203
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISDP-----------FPTIRPDEVTYVGVL 135
GD++KA+ + M+ K+ +W MI G + + +P ++PD VT VL
Sbjct: 204 GDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVL 263
Query: 136 SA 137
+A
Sbjct: 264 NA 265
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLR 98
+T ++ R N F +A L M+ + +P D F ++L ++Y K G + AQ V
Sbjct: 25 YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSFIHNQLL--HLYAKFGKLSDAQNVFD 82
Query: 99 KMLRKDKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACTHNGNE 144
M ++D ++W ++ A + D P D V+Y +++ NG+
Sbjct: 83 NMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPY--RDSVSYNTLIACFASNGHS 136
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +W ++ GY G V+ A F QMP +D + WT MI Y + ++++AL ++
Sbjct: 327 MPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIY 386
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM+ + I PDE T+ + +A MY KC
Sbjct: 387 SEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 446
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G ++ + + K+ K+ + W A+I GLA+ I P+ VT++ +L
Sbjct: 447 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 506
Query: 136 SACTHNG 142
SACTH G
Sbjct: 507 SACTHAG 513
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y + AR+ F +M ERD WTAM+ RV A LF EM
Sbjct: 274 TALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEM------ 327
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISD 119
P+ T Y + G+VE A+ + +M KD +WT MI LAI
Sbjct: 328 PERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYS 387
Query: 120 P--FPTIRPDEVTYVGVLSACTHNG 142
I PDEVT V SAC H G
Sbjct: 388 EMRLNGIIPDEVTMSTVASACAHIG 412
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTA-MIDGYLRVNRFREALTL 59
M+N +V + ++ G++ G A Q + M E VL T+ ++ F A+ L
Sbjct: 194 MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 253
Query: 60 FPEMQTSNIRPDEFT---IVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M +I F V+ Y K + +A++V +M +D F WTAM+ LA
Sbjct: 254 -GQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALA 312
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++++S ++ G++ G V+ A F++MP RD V W +M+ Y + + EAL LF
Sbjct: 122 MPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 181
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M ++P E T+V +L+A MY KC
Sbjct: 182 DQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKC 241
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI-------SDPFPTIR-----PDEVTYVGVL 135
G + A +V M KD W +I G+AI F ++ P+++T+V +L
Sbjct: 242 GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAML 301
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 302 SACSHAG 308
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 18/152 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D++SW ++ GY+ RG++ AR F +M RD + W MI+GY V + EA LF E
Sbjct: 62 DRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDE 121
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV--------- 113
M N+ + +L ++ KCG+VE A + +M +D +W +M+
Sbjct: 122 MPERNL----VSXNSMLXGFV--KCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 175
Query: 114 -GLAISDPFPT--IRPDEVTYVGVLSACTHNG 142
LA+ D ++P E T V +LSAC H G
Sbjct: 176 EALALFDQMXAVGVKPSEATVVSLLSACAHLG 207
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +A Q F M +D + W +I G + +EA LF EM+ + +
Sbjct: 232 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVE 291
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P++ T V +L+A + G V++ Q++L M
Sbjct: 292 PNDITFVAMLSACSH--AGMVDEGQKLLDCM 320
>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
Length = 517
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 46/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD++ W ++ Y G+++ AR+ F + PE+D V W +I GY + AL +F E
Sbjct: 194 HKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHALEVFDE 253
Query: 63 MQTSNIRPDEFTIVRILT----------------------------------AYMYCKCG 88
M+ + PDE TIV +L+ MY KCG
Sbjct: 254 MRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNALVSMYAKCG 313
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
D+ A M D +TW ++I GLA I P+E++++ VL
Sbjct: 314 DLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNEISFLCVLG 373
Query: 137 ACTHNG 142
AC+H G
Sbjct: 374 ACSHAG 379
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 58/156 (37%), Gaps = 41/156 (26%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFTIVR 77
RG++ AR+ F +P D + AM+ GY +A ++ M + S +RPD FT
Sbjct: 46 RGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCY 105
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKD 104
+L A M+ KCGD+ A +L + D
Sbjct: 106 LLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGD 165
Query: 105 KFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTH 140
W+A+I G A R D + CTH
Sbjct: 166 VVAWSAVIAGHA-------ARGDMAAARKMFDECTH 194
>gi|255561106|ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539243|gb|EEF40836.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 338
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 33/148 (22%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D +SW I+ GY+ G+ + A + F MPE++ + +T MI G+++ +EAL LF E
Sbjct: 174 HPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQE 233
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ + I+PD+ + +L+A MY KCG
Sbjct: 234 MQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCGS 293
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAI 117
++ A V +K +K WTA+I G AI
Sbjct: 294 MQDALEVFKKTRKKSVSLWTALIHGFAI 321
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 49/152 (32%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV + ++ Y G ++ AR F ++P D V W ++IDGY+
Sbjct: 143 GSDVYTTNSLLHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYV-------------- 188
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS---- 118
KCG+ E A + + M K+ ++T MI G +
Sbjct: 189 -----------------------KCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDK 225
Query: 119 ---DPF-----PTIRPDEVTYVGVLSACTHNG 142
D F I+PD++ VLSAC H G
Sbjct: 226 EALDLFQEMQIAGIKPDKIVLTNVLSACAHLG 257
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 18 NRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
N G + A+ F + R + +W AM+ GY N+ EAL L+ +M ++ + +T
Sbjct: 56 NSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGYTFP 115
Query: 77 RILTAYMYCKC-GDVEKAQRVLRKMLR----KDKFTWTAMIVGLAISDPFPTIR------ 125
+L A C +EKAQ+V ++++ D +T +++ A S + R
Sbjct: 116 FLLKA---CSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRI 172
Query: 126 --PDEVTYVGVL 135
PD V++ ++
Sbjct: 173 PHPDTVSWNSII 184
>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
Length = 603
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 55/190 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++SW I+ GY+ +G +D A +F +MPE+D W +I GY + AL L
Sbjct: 267 MPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGY----KDEGALNLL 322
Query: 61 PEMQTSNIRPDEFT---------------------IVRILTAY------------MYCKC 87
EM RPD+ T + I T + MY KC
Sbjct: 323 SEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVMSSLISMYSKC 382
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV-----GLAIS----------DPFPTIRPDEVTYV 132
G + +A +V ++++D TW AMI GLA D F PD T++
Sbjct: 383 GLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRMTKDGFS---PDHATFL 439
Query: 133 GVLSACTHNG 142
VLSAC H G
Sbjct: 440 SVLSACAHKG 449
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD +SWT IV GY+ G VD A + F MP+RD + W M+ G++ R +AL LF
Sbjct: 205 MPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALRLF 264
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M PD + Y + GD++ A RKM KD+ +W +I G
Sbjct: 265 ADM------PDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGYKDEGA 318
Query: 121 FPTI--------RPDEVTYVGVLSACT 139
+ RPD+ T+ +S C+
Sbjct: 319 LNLLSEMTQGGYRPDQATWSVAISICS 345
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ V+SW ++SGY+ G VD AR F MP R+ V W MI GY++ R REA +F
Sbjct: 81 MPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIF 140
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
P T V Y + G ++ A+ + +M D +W AMI G
Sbjct: 141 DRA------PSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGM 194
Query: 117 ------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ D P D V++ ++ NG+
Sbjct: 195 MQVAQRLFDEMP--EKDTVSWTAIVRGYLQNGD 225
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W ++SG + G + AR F MP R+ V W A++ GY R R EA LF
Sbjct: 19 MSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELF 78
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M PD + Y G V++A+ + M ++ +W MI G
Sbjct: 79 DRM------PDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISG 126
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D + + ++S Y G + A Q F + +RD V W AMI Y EALTLF M
Sbjct: 367 RDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALTLFDRM 426
Query: 64 QTSNIRPDEFTIVRILTA-----YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
PD T + +L+A Y+Y C Q+ + R D ++ ++G
Sbjct: 427 TKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYSCMVDLLG 482
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ G+V AR+ F +M ER+ W MI G +R +A +F M N +
Sbjct: 3 HFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRN----SVSW 58
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+LT Y +CG V +A+ + +M + +W AMI G
Sbjct: 59 AALLTG--YARCGRVAEARELFDRMPDRSVVSWNAMISG 95
>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
Length = 648
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDVISWT IV Y G + A + F + P +D V WTAM+ GY + +AL +F
Sbjct: 203 MVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVF 262
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + DE ++ ++A MY KC
Sbjct: 263 DRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKC 322
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPF---------PTIRPDEVTYVGV 134
G +++A +V M K+ +T+++MI GLA S+ + P+ VT++GV
Sbjct: 323 GLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGV 382
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 383 LTACSHAG 390
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 51/144 (35%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y+ G V AR+ F +M E+D + WT+++ Y R
Sbjct: 183 LIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTR---------------------- 220
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------- 123
GD+ A+ V + KD WTAM+ G A + P
Sbjct: 221 ---------------SGDMRSAEEVFGRCPVKDMVAWTAMVTGYA-QNAMPVKALEVFDR 264
Query: 124 -----IRPDEVTYVGVLSACTHNG 142
+ DEV+ G +SAC G
Sbjct: 265 MAELGMVIDEVSLTGAISACAQLG 288
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 44/176 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y G +D AR+ F QM ++D V WTAMI Y + + EA LF EM+ + +
Sbjct: 272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVS 331
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T+ +L+A MY KCG VE+A RV
Sbjct: 332 PDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 391
Query: 97 LRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M K++ TW AMI A + D ++ P ++T++GVLSAC H G
Sbjct: 392 FEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM-SVPPSDITFIGVLSACVHAG 446
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV ++ Y GQV AR+ F ++ ERD V W +MI GY ++A+ LF +M
Sbjct: 165 RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM 224
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ PDE T+V +L A MY KCGD+
Sbjct: 225 EEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDL 284
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSAC 138
+ A+RV +M++KD+ WTAMI + S+ F + PD T VLSAC
Sbjct: 285 DSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSAC 344
Query: 139 THNG 142
G
Sbjct: 345 GSVG 348
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 46/173 (26%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIRPDEFTI 75
+ G + + F+ E ++ + MI G N AL+L+ M+ S ++PD+FT
Sbjct: 76 VELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTY 135
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
+ A MY KCG V A+++ ++
Sbjct: 136 NFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITE 195
Query: 103 KDKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVGVLSACTHNGN 143
+D +W +MI G + D R PDE T V +L AC+H G+
Sbjct: 196 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGD 248
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V+ A + F MP ++ W AMI Y +EAL LF M ++
Sbjct: 373 TGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVP 429
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLA-------- 116
P + T + +L+A ++ G V + R +M L +T +I L+
Sbjct: 430 PSDITFIGVLSACVH--AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 487
Query: 117 --ISDPFPTIRPDEVTYVGVLSAC 138
+ FP +PDE+ +L AC
Sbjct: 488 WEFMERFPG-KPDEIMLAAILGAC 510
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 88.6 bits (218), Expect = 7e-16, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 44/176 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y G +D AR+ F QM ++D V WTAMI Y + + EA LF EM+ + +
Sbjct: 268 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVS 327
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T+ +L+A MY KCG VE+A RV
Sbjct: 328 PDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 387
Query: 97 LRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M K++ TW AMI A + D ++ P ++T++GVLSAC H G
Sbjct: 388 FEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM-SVPPSDITFIGVLSACVHAG 442
Score = 85.1 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV ++ Y GQV AR+ F ++ ERD V W +MI GY ++A+ LF +M
Sbjct: 161 RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM 220
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ PDE T+V +L A MY KCGD+
Sbjct: 221 EEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDL 280
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSAC 138
+ A+RV +M++KD+ WTAMI + S+ F + PD T VLSAC
Sbjct: 281 DSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSAC 340
Query: 139 THNG 142
G
Sbjct: 341 GSVG 344
Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 46/173 (26%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIRPDEFTI 75
+ G + + F+ E ++ + MI G N AL+L+ M+ S ++PD+FT
Sbjct: 72 VELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTY 131
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
+ A MY KCG V A+++ ++
Sbjct: 132 NFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITE 191
Query: 103 KDKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVGVLSACTHNGN 143
+D +W +MI G + D R PDE T V +L AC+H G+
Sbjct: 192 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGD 244
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V+ A + F MP ++ W AMI Y +EAL LF M ++
Sbjct: 369 TGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVP 425
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLA-------- 116
P + T + +L+A ++ G V + R +M L +T +I L+
Sbjct: 426 PSDITFIGVLSACVH--AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 483
Query: 117 --ISDPFPTIRPDEVTYVGVLSAC 138
+ FP +PDE+ +L AC
Sbjct: 484 WEFMERFPG-KPDEIMLAAILGAC 506
>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
Length = 433
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++G+ GQV + ++ F +MPERD + W M+ Y+ + EAL F M+ S + PD
Sbjct: 1 MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T+V +L+A MY KCG +E+++ +
Sbjct: 61 EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120
Query: 99 KMLRKDKFTWTAMIVGLA----------ISDPF--PTIRPDEVTYVGVLSACTHNG 142
M R+D TW MI GLA + + F + P VT+VGVL+AC+ G
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAG 176
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ +R F MP RD W MI G ++ALTLF +
Sbjct: 100 TALLDMYAKCGCIEQSRLLFENMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLH 159
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGLAISD 119
P T V +L A + G V++ + + M + + + M+ GL
Sbjct: 160 PMNVTFVGVLNA--CSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEA 217
Query: 120 ----PFPTIRPDEVTYVGVLSACTHNG 142
I PD V + VL AC +G
Sbjct: 218 IKVIESMAISPDPVLWAMVLCACRIHG 244
>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
Length = 853
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ V++WT +++GY+ +V++A F M +++ V W AMI GY+ +R + L LF
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRA 274
Query: 63 MQTSNIRPDEFTIVRILTA----------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
M IRP+ + L MYCKCG++ A ++ M +KD
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVV 334
Query: 107 TWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVLSACTHNG 142
W AMI G A F +R PD +T+V VL AC H G
Sbjct: 335 AWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAG 382
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW +++GY RG+++ AR F M E++ V W AMI GY+ +A F
Sbjct: 150 MPFKDAASWNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFF 209
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-LRKDKFTWTAMIVG 114
+ ++T YM K VE A+ + + M ++K+ TW AMI G
Sbjct: 210 KAAPFRGV----VAWTAMITGYM--KAKKVELAEAMFKDMTVKKNLVTWNAMISG 258
Score = 65.5 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D S+ ++S Y+ G + A+ +F +MP +D W MI GY R +A LF M
Sbjct: 123 DTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMM 182
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N E + +++ Y+ +CGD+EKA + + WTAMI G
Sbjct: 183 EKN----EVSWNAMISGYI--ECGDLEKAAHFFKAAPFRGVVAWTAMITG 226
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 18/143 (12%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ A + F M ++D V W AMI GY + +AL LF EM+ S +PD T
Sbjct: 312 YCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITF 371
Query: 76 VRILTAYMYCKCGDV-----EKAQRVLRKMLRKDKFTWTAMIVG----------LAISDP 120
V +L A + D+ + R R R D +T ++G L S P
Sbjct: 372 VAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMP 431
Query: 121 FPTIRPDEVTYVGVLSACTHNGN 143
F RP + +L AC + N
Sbjct: 432 F---RPHAAVFGTLLGACRVHKN 451
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFPEMQTSNIRP 70
I++ + G +D A F M ++ V W +++ G + +R EA LF E+ P
Sbjct: 67 IIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIP----EP 122
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
D F+ +L+ Y+ + G+ EKAQ +M KD +W MI G A
Sbjct: 123 DTFSYNIMLSCYV--RNGNFEKAQSFFNRMPFKDAASWNTMITGYA 166
Score = 42.0 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREA 56
MK KDV++W ++SGY G + A F +M + D++ + A++
Sbjct: 328 MKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIG 387
Query: 57 LTLFPEMQTS---NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+T F M RPD +T + L + G VE+A +++R M
Sbjct: 388 MTYFDSMVRDYRVEPRPDHYTCMVDLLG----RAGKVEEALKLIRSM 430
>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Glycine max]
Length = 785
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI++T ++ GY G +D AR F + RD V WTAMI GY + +AL LF M
Sbjct: 345 NVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMI 404
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+P+ +T+ +L+ MY + G ++
Sbjct: 405 REGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIK 464
Query: 92 KAQRVLRKMLR-KDKFTWTAMIVGLAIS-------DPFP-----TIRPDEVTYVGVLSAC 138
A+++ + +D TWT+MI+ LA + F ++PD +TYVGVLSAC
Sbjct: 465 DARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSAC 524
Query: 139 THNG 142
TH G
Sbjct: 525 THVG 528
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 76/185 (41%), Gaps = 45/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K SW I+S + G +D AR+ F ++P+ D V WT MI GY + F+ A+ F
Sbjct: 74 MPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAF 133
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M +S I P +FT +L + MY KC
Sbjct: 134 LRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKC 193
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPFPTIRPDEVTYVGVLSA 137
GD A+ V +M KD TW MI + LA+ D PD V++ +++
Sbjct: 194 GDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTD--PDIVSWNSIITG 251
Query: 138 CTHNG 142
H G
Sbjct: 252 YCHQG 256
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 78/215 (36%), Gaps = 79/215 (36%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD +W ++S ++ Q D+A F QM + D V W ++I GY AL F
Sbjct: 206 MRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETF 265
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M ++S+++PD+FT+ +L+A MY K
Sbjct: 266 SFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAK 325
Query: 87 CGDVEKAQRVLR---------------------------------KMLRKDKFTWTAMIV 113
G VE A R++ + +D WTAMIV
Sbjct: 326 SGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIV 385
Query: 114 GLA----ISDPFPTIR--------PDEVTYVGVLS 136
G A ISD R P+ T VLS
Sbjct: 386 GYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLS 420
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G + AR+ F + RD + WT+MI + EA+ LF +M N++P
Sbjct: 453 LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKP 512
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI--VGLA--ISDPF 121
D T V +L+A + G VE+ + M + + MI +G A + + +
Sbjct: 513 DHITYVGVLSACTH--VGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAY 570
Query: 122 PTIR-----PDEVTYVGVLSAC 138
IR PD V + +LS+C
Sbjct: 571 NFIRNMPIEPDVVAWGSLLSSC 592
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+++ Y++ +A LF EM F+ IL+A+ K G+++ A+RV ++ +
Sbjct: 54 LLNLYVKTGSSSDAHRLFDEMPLKT----TFSWNTILSAH--AKAGNLDSARRVFDEIPQ 107
Query: 103 KDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
D +WT MIVG F + I P + T+ VL++C
Sbjct: 108 PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCA 156
>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 612
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ GY G V++AR F MP+R V W ++ Y ++ +RE L LF
Sbjct: 245 MPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLF 304
Query: 61 PEM-QTSNIRPDEFTIVRILTA-----------------------------------YMY 84
M N P+E T V +LTA MY
Sbjct: 305 DVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMY 364
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG +E A+ + M K +W +MI+G + + F + RP+E T++
Sbjct: 365 AKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFI 424
Query: 133 GVLSACTHNG 142
VLS+C H G
Sbjct: 425 CVLSSCAHGG 434
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+S+ +V+GY+ G + AR F M RD V W +MI GY R A +F
Sbjct: 183 MPERDVVSYNSMVAGYVAEGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMF 242
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV------- 113
M P+ + Y + GDVE A+ V M ++ +W ++
Sbjct: 243 DAM------PERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRD 296
Query: 114 ---GLAISDPF---PTIRPDEVTYVGVLSACTHNGN 143
L + D P+E T+V VL+AC + G+
Sbjct: 297 WRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGD 332
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++W ++ + G + AR+ F +MPERD V + +M+ GY+ A LF M
Sbjct: 156 DAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMA 215
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
R D T +++ Y + GD+E A+++ M +D +W +M+ G A
Sbjct: 216 ----RRDVVTWNSMISG--YSRHGDMENARKMFDAMPERDVVSWNSMLDGYA 261
>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
Length = 612
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ GY G V++AR F MP+R V W ++ Y ++ +RE L LF
Sbjct: 245 MPERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLF 304
Query: 61 PEM-QTSNIRPDEFTIVRILTA-----------------------------------YMY 84
M N P+E T V +LTA MY
Sbjct: 305 DVMIAEGNTVPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMY 364
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYV 132
KCG +E A+ + M K +W +MI+G + + F + RP+E T++
Sbjct: 365 AKCGVMETAREIFNSMGEKSVPSWNSMIIGYGLHGQSEKALELFLEMERDGPRPNETTFI 424
Query: 133 GVLSACTHNG 142
VLS+C H G
Sbjct: 425 CVLSSCAHGG 434
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+S+ +V+GY+ G + AR F M RD V W +MI GY R A +F
Sbjct: 183 MPERDVVSYNSMVAGYVAEGDLAGARNLFDGMARRDVVTWNSMISGYSRHGDMENARKMF 242
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV------- 113
M P+ + Y + GDVE A+ V M ++ +W ++
Sbjct: 243 DAM------PERDVVSWNSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRD 296
Query: 114 ---GLAISDPF---PTIRPDEVTYVGVLSACTHNGN 143
L + D P+E T+V VL+AC + G+
Sbjct: 297 WRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGD 332
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++W ++ + G + AR+ F +MPERD V + +M+ GY+ A LF M
Sbjct: 156 DAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDGMA 215
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
R D T +++ Y + GD+E A+++ M +D +W +M+ G A
Sbjct: 216 ----RRDVVTWNSMISG--YSRHGDMENARKMFDAMPERDVVSWNSMLDGYA 261
>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
Length = 655
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 49/187 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D ISW I+ GY+ +G +D A +F + P +D + W +I GY + AL+L
Sbjct: 308 MPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGY----KDEGALSLL 363
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM ++PD+ T+ +++ MY KC
Sbjct: 364 SEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKC 423
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVL 135
G + +A +V +L++D TW AMI A ++D + RPD T++ +L
Sbjct: 424 GLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSIL 483
Query: 136 SACTHNG 142
SAC H G
Sbjct: 484 SACAHKG 490
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+S T I+ GY+ G VD A + F MP RD V W M+DG++R +R +AL LF
Sbjct: 246 MPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLF 305
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----A 116
EM PD I Y + GD++ A R+ KD +W +I G A
Sbjct: 306 SEM------PDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGA 359
Query: 117 ISDPFPTIR----PDEVTYVGVLSACT 139
+S IR PD+ T V+S C
Sbjct: 360 LSLLSEMIRGGLKPDQATLSVVISICA 386
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++V+SW +VSGY G V AR+ F MP RD V W MI GY++ REA LF
Sbjct: 124 DRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDS 183
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M + P +L+ Y+ + G + A+ + +M ++ +W MI G A
Sbjct: 184 MPS----PPTSVCNALLSGYV--ELGYMRAAEVLFGQMQTRNPVSWNVMITGYA 231
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +VSG I + AR+ F MP R+ V W A++ GY R R EA LF
Sbjct: 60 MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N PD + Y + G V++A+ + M +D +W MI G
Sbjct: 120 ------NRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISG 167
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++SGY+ G + A F QM R+ V W MI GY R A LF EM P+
Sbjct: 195 LLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEM------PE 248
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
+ + R Y + G V+ A +V + M +D W M+ G +D
Sbjct: 249 KDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRND 296
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D + + ++S Y G + A Q F + +RD V W AMI Y EAL +F M
Sbjct: 408 HDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMM 467
Query: 64 QTSNIRPDEFTIVRILTA-----YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ RPD T + IL+A Y+Y C Q + R D ++ ++G
Sbjct: 468 TKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLG 523
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88
F +M ER+ W M+ G +R EA +F M N + +LT Y +CG
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRN----SVSWAALLTG--YARCG 110
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V +A+ + ++ ++ +W AM+ G A
Sbjct: 111 RVAEARELFNRIPDRNVVSWNAMVSGYA 138
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +++GY G++ A+ F +MP+RD V W AMI GY + EAL LF
Sbjct: 333 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLF 392
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M+ R + + L+ MYCKC
Sbjct: 393 VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 452
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVL 135
G +E+A + ++M KD +W MI G + S ++PD+ T V VL
Sbjct: 453 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL 512
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 513 SACSHTG 519
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 25/143 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DV+SW I++GY G++D ARQ F + P D WTAM+ GY++ EA LF
Sbjct: 240 MKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF 299
Query: 61 PEMQTSN-----------IRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
M N ++ + + + L M Y +CG + +A+
Sbjct: 300 DRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 359
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS 118
+ KM ++D +W AMI G + S
Sbjct: 360 LFDKMPKRDPVSWAAMIAGYSQS 382
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
+S+ ++SGY+ G+ ++AR F +MPERD V W MI GY+R +A LF M
Sbjct: 91 VSYNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPER 150
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
++ + IL+ Y C V+ A+RV +M K+ +W A++
Sbjct: 151 DV----CSWNTILSGYAQNGC--VDDARRVFDRMPEKNDVSWNALL 190
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 25/139 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW I+SGY G VD AR+ F +MPE++ V W A++ Y++ ++ EA LF
Sbjct: 147 MPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLF 206
Query: 61 PEMQT-----------SNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
+ ++ + R M Y + G++++A++
Sbjct: 207 GSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQ 266
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ + D FTWTAM+ G
Sbjct: 267 LFDESPVHDVFTWTAMVSG 285
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+N ++SW ++ G++ + ++ ARQ+F M RD V W +I GY + EA LF
Sbjct: 210 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFD 269
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
E ++ FT +++ Y+ + VE+A+ + +M +++ +W AM+ G
Sbjct: 270 ESPVHDV----FTWTAMVSGYIQNRM--VEEARELFDRMPERNEVSWNAMLAG 316
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ W +S Y+ G+ A + F +MP V + AMI GYLR F A LF E
Sbjct: 56 DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------ 116
M P+ + + Y + ++ KA+ + +M +D +W ++ G A
Sbjct: 116 M------PERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVD 169
Query: 117 ----ISDPFPTIRPDEVTYVGVLSACTHN 141
+ D P ++V++ +LSA N
Sbjct: 170 DARRVFDRMP--EKNDVSWNALLSAYVQN 196
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ A F +M +D V W MI GY R EAL F M+ ++PD+ T+
Sbjct: 449 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATM 508
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
V +L+A + G V+K ++ M
Sbjct: 509 VAVLSACSH--TGLVDKGRQYFHTM 531
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY+ + AR+ F +MPERD W ++ GY + +A +F
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF 175
Query: 61 PEMQTSN 67
M N
Sbjct: 176 DRMPEKN 182
>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
Length = 674
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKD+ +W +++ Y++ + A + F M ER+ V W AMIDGY R EA+
Sbjct: 312 MPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHL 371
Query: 61 PEMQTSNIRPDEFTIVRILTA------------------------------YMYCKCGDV 90
M S IRP+E T+ ILT+ MY + GD+
Sbjct: 372 ILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIGDI 431
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
++ + KD +WTAM++ +PDE+T+VGVLSAC
Sbjct: 432 SSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSAC 491
Query: 139 THNG 142
+H G
Sbjct: 492 SHAG 495
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT +V GY G +D AR F QMPE++ + WTAM+ Y+ R EAL LF
Sbjct: 188 MPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLF 247
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
EM N+ I L V +A ++ M ++ +WT M+ GLA
Sbjct: 248 HEMPQRNLYSWNTMISGCLDGK------RVNEAFKLFHLMPLRNAVSWTIMVSGLA 297
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +V SWT ++SGY GQV A Q F QMP ++ V WT M+ GY R +A ++F
Sbjct: 157 MIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVF 216
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+M P++ TI Y G ++A ++ +M +++ ++W MI G
Sbjct: 217 NQM------PEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISG 264
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V AR+ F +MP D V +TAMI YL+ N R+A LF M PD +
Sbjct: 83 GNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTM------PDRTIVAESA 136
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y K G ++ AQ+V M+ + F+WT++I G
Sbjct: 137 MIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISG 171
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + D +S+T +++ Y+ ++ A + F MP+R V +AMIDGY + A +F
Sbjct: 95 MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVF 154
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M +N+ F+ +++ Y + G V KA ++ +M K+ +WT M++G A
Sbjct: 155 DAMIDTNV----FSWTSLISGYF--RDGQVAKACQLFDQMPAKNVVSWTTMVLGYA 204
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +++ + ++ GY G +D A++ F M + + WT++I GY R + +A LF
Sbjct: 126 MPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLF 185
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M N+ + Y + G +++A+ V +M K+ +WTAM+
Sbjct: 186 DQMPAKNV------VSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMM 231
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++SG ++ +V+ A + F MP R+ V WT M+ G R + A F
Sbjct: 250 MPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M +I ++TAY+ +C VE A + M ++ TW AMI G A P
Sbjct: 310 DQMPNKDIAAWN----AMITAYVD-ECLIVE-ASELFNLMTERNIVTWNAMIDGYARHRP 363
Query: 121 ------------FPTIRPDEVTYVGVLSAC 138
IRP+E T +L++C
Sbjct: 364 DGEAMKHLILMLRSCIRPNETTMTIILTSC 393
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 58/187 (31%), Positives = 81/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W ++ GYI VD A +F Q+P R V WTA+I G+++ + AL LF
Sbjct: 174 MSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELF 233
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M RP TIV +L+A MY K
Sbjct: 234 GRMVLEGHRPTHVTIVGVLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKS 293
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G +E A V +++ KD FTWT MI + + P+ VT+V VL
Sbjct: 294 GHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVL 353
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 354 SACSHSG 360
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 76/203 (37%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y + G+V AR+ F ++P D + +T+++ +L+++ REA++LF + + RPD F +
Sbjct: 57 YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
V L+A MY +CG E A +V +M
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176
Query: 103 KDKFTWTAMIVG----------LAISDPFPTI---------------------------- 124
KD+ TW +M+ G L+ D P
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRM 236
Query: 125 -----RPDEVTYVGVLSACTHNG 142
RP VT VGVLSAC G
Sbjct: 237 VLEGHRPTHVTIVGVLSACADIG 259
>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
Length = 658
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD +SWT IV GY+ G VD A + F MP+RD + W M+ G++ +R +AL LF
Sbjct: 249 MPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLF 308
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M PD + Y + GD++ A R ML KD+ +W +I G
Sbjct: 309 ADM------PDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGYKDEGA 362
Query: 121 FPTI--------RPDEVTYVGVLSACT 139
+ RPD+ T+ V+S C
Sbjct: 363 LSLLSEMTRGGYRPDQATWSVVISVCA 389
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 49/187 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D++SW I+ GYI +G +D A +F M E+D W +I GY + AL+L
Sbjct: 311 MPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGY----KDEGALSLL 366
Query: 61 PEMQTSNIRPDEFT---------------------IVRILTAY------------MYCKC 87
EM RPD+ T I I T + MY KC
Sbjct: 367 SEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKC 426
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPFPTIR--PDEVTYVGVL 135
G + +A +V ++++D TW AMI LA+ D R PD T++ VL
Sbjct: 427 GLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVL 486
Query: 136 SACTHNG 142
SAC H G
Sbjct: 487 SACAHKG 493
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 13/151 (8%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SW +VSGY+ G VD AR+ F MP RD V W M+ GY+R RFREA +F
Sbjct: 124 MPHRNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIF 183
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+ P ++ L + Y G ++ A+ + +M R D+ +W AMI G +
Sbjct: 184 DRAPS----PPPTSVCNALLS-GYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGM 238
Query: 121 FPTIR--------PDEVTYVGVLSACTHNGN 143
R D V++ ++ NG+
Sbjct: 239 MQVARRLFDEMPGKDTVSWTAIVRGYLQNGD 269
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V +W +VSG G + AR F MP R+ V W A++ GY R R EA LF
Sbjct: 62 MRERNVFTWNCMVSGLARNGLLADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLF 121
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M N+ + +++ Y+ + G V++A+ + M +D +W M+ G
Sbjct: 122 DRMPHRNV----VSWNAMVSGYL--RNGMVDRARELFDAMPARDDVSWLMMVSG 169
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV W + + G+V AR+ F +M ER+ W M+ G R +A +F M
Sbjct: 35 DVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFDAMP 94
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ N + +LT Y + G V +A+ + +M ++ +W AM+ G
Sbjct: 95 SRN----SVSWAALLTG--YARRGRVAEARDLFDRMPHRNVVSWNAMVSG 138
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D + + ++S Y G + A Q F + +RD V W AMI Y EAL LF M
Sbjct: 411 HDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRM 470
Query: 64 QTSNIRPDEFTIVRILTA-----YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
PD T + +L+A Y+Y C Q+ + R D ++ ++G
Sbjct: 471 TKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLLG 526
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 83/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VIS+T ++ GY+ G AR+ F M RD + WTAMI GY + + EA+ LF M
Sbjct: 363 NVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMI 422
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
S P+ T+ +L+A +Y + G V
Sbjct: 423 RSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVP 482
Query: 92 KAQRVLRKML-RKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
A+RV ++ RK+ TWT+MIV LA ++PD VTY+GV SAC
Sbjct: 483 LARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSAC 542
Query: 139 THNG 142
TH G
Sbjct: 543 THAG 546
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 33/142 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ +W ++S Y G++ AR FAQMPERD V WT M+ G R RF +A+ F +M
Sbjct: 95 RNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDM 154
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ P +F + +L++ YMY KCGD
Sbjct: 155 VGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDA 214
Query: 91 EKAQRVLRKMLRKDKFTWTAMI 112
E A+ V +M + + +W AM+
Sbjct: 215 ETARAVFERMKVRSESSWNAMV 236
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 80/218 (36%), Gaps = 79/218 (36%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK + SW +VS Y ++G++D+A F M ER V W A+I GY + AL F
Sbjct: 224 MKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFF 283
Query: 61 PEMQT-SNIRPDEFTIVRILTA---------------------------------YMYCK 86
M T S++ PDEFT+ +L+A Y K
Sbjct: 284 SRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAK 343
Query: 87 CGDVEKAQRVLRK---------------------------------MLRKDKFTWTAMIV 113
G VE A+R++ K M +D WTAMIV
Sbjct: 344 SGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIV 403
Query: 114 GL--------AISDPFPTIR----PDEVTYVGVLSACT 139
G A+ IR P+ T VLSAC
Sbjct: 404 GYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACA 441
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
F EA LF ++ + R + FT +L+ MY K G + A+ V +M +D +WT M+
Sbjct: 80 FHEARRLFDDIPYA--RRNAFTWNSLLS--MYAKSGRLADARVVFAQMPERDAVSWTVMV 135
Query: 113 VGLAISDPF------------PTIRPDEVTYVGVLSACT 139
VGL + F + P + VLS+C
Sbjct: 136 VGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCA 174
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +VSGY +G +++AR F +MP ++ V WT M+ + EA LF
Sbjct: 128 MPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLF 187
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M+ +++ D +V IL A M+CKC
Sbjct: 188 AQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 247
Query: 88 GDVEKAQRVL-RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V +A V + ++KD +W ++I G A+ + F ++ PD VT + V
Sbjct: 248 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 307
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 308 LSACTHMG 315
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ + G++ R+ F +MPE+D V W ++DGY + A LF
Sbjct: 66 MPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELF 125
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
M P+ + YCK GD+E A+ + KM K+ TWT M+ A
Sbjct: 126 QRM------PERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGL 179
Query: 120 -----------PFPTIRPDEVTYVGVLSACTHNGN 143
++ D V +L+AC +G+
Sbjct: 180 VDEAGKLFAQMKEASVELDVAAVVSILAACAESGS 214
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D ++ Y G AR+ F +MPERD V W + +R LF EM
Sbjct: 38 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEM 97
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-------- 115
P++ T+ Y K G+VE A + ++M ++ +W+ M+ G
Sbjct: 98 ------PEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEM 151
Query: 116 --AISDPFPTIRPDEVTYVGVLSACTHNG 142
I D P+ + VT+ ++SAC G
Sbjct: 152 ARVIFDKMPS--KNLVTWTIMVSACAQKG 178
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93
++D V W ++I G+ +AL LF +M+ PD T++ +L+A + G V++
Sbjct: 263 QKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTH--MGFVDEG 320
Query: 94 QRVLRKMLRKDKFT-----WTAMI----VGLAISDPFPTIR-----PDEVTYVGVLSACT 139
+R M R + MI G I + I+ P+EV + +LSAC
Sbjct: 321 RRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACR 380
Query: 140 HNGN 143
+ N
Sbjct: 381 LHKN 384
>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
Length = 596
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y D A++ F +MP R+ V WTA+I GY++ F + + +F EM
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 65 TSNIRPDEFTIVRILTA---------------YM------------------YCKCGDVE 91
S++ P+E T+ +L+A YM Y KCG +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
+A V ++ K+ +TWTAMI G A D F T + P+EVT++ VLSAC
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 140 HNG 142
H G
Sbjct: 419 HGG 421
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++SGY + G D A + F ++D V WTAMIDG++R EA+ F EM+ + + +
Sbjct: 144 LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAAN 203
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
E T+V +L A MY KC + AQ+V
Sbjct: 204 EMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVF 263
Query: 98 RKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
+M ++ TWTA+I G S F + P+E T VLSAC H G
Sbjct: 264 DEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y+ G ++ A F ++ E++ WTAMI+G+ R+A LF M +S++
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T + +L+A + G VE+ +R+ M
Sbjct: 405 PNEVTFMAVLSACAH--GGLVEEGRRLFLSM 433
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 75/147 (51%), Gaps = 33/147 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++I T I+ Y+ G VD AR+ F +M +RD V W+AMI GY + R EAL LF M+
Sbjct: 262 NMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMR 321
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
++P++ T+V +L+A MY KCG++
Sbjct: 322 REKVKPNDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNIS 381
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS 118
KA+ V K +KD TW +MIVGLA++
Sbjct: 382 KAREVFGKTPQKDIVTWNSMIVGLAVN 408
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD IS+ +++GY G V AR+ F M ER V W AMI Y E L F M
Sbjct: 160 KDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERM 219
Query: 64 QTSNIRPDEFTIVRILT---------------------------------AYMYCKCGDV 90
Q +I P+E T+V +L+ MY KCG V
Sbjct: 220 QAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAV 279
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSAC 138
+ A++ +M ++D W+AMI G A + + F +R P++VT V VLSAC
Sbjct: 280 DDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSAC 339
Query: 139 THNGN 143
G+
Sbjct: 340 VQLGS 344
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 41/175 (23%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V +N +D ARQ F Q+P+ +L+ ++I Y +++ ++AL F M S+ R
Sbjct: 34 TVLVRKLLNLSDIDYARQLFDQVPQPGQILYNSLISTYSKLSLHKDALKTFFSMHHSDTR 93
Query: 70 PDEFT---IVRILTAYM------------------------------YCKCGDVEKAQRV 96
FT +++ ++ + Y K G++ A+++
Sbjct: 94 LSCFTGPPVIKACSSLLAIDVGKQVHSLIVICGIDCNVYVQTSLMDFYAKIGELGSARKI 153
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNGN 143
+L KD ++ +I G + + R V++ ++S HNG+
Sbjct: 154 FDGILVKDPISYNCLITGYSKAGDVIAARRLFDSMTERTVVSWNAMISCYAHNGD 208
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRF-REALTLFPEMQTSN 67
+V Y G + AR+ F + P++D V W +MI G L VN F ++A+ L+ M+ ++
Sbjct: 370 LVGMYSKCGNISKAREVFGKTPQKDIVTWNSMIVG-LAVNGFAKDAIALYRNMKEAD 425
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y D A++ F +MP R+ V WTA+I GY++ F + + +F EM
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 65 TSNIRPDEFTIVRILTA---------------YM------------------YCKCGDVE 91
S++ P+E T+ +L+A YM Y KCG +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
+A V ++ K+ +TWTAMI G A D F T + P+EVT++ VLSAC
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 140 HNG 142
H G
Sbjct: 419 HGG 421
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++SGY + G D A + F ++D V WTAMIDG++R EA+ F EM+ + + +
Sbjct: 144 LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAAN 203
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
E T+V +L A MY KC + AQ+V
Sbjct: 204 EMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVF 263
Query: 98 RKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
+M ++ TWTA+I G S F + P+E T VLSAC H G
Sbjct: 264 DEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y+ G ++ A F ++ E++ WTAMI+G+ R+A LF M +S++
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T + +L+A + G VE+ +R+ M
Sbjct: 405 PNEVTFMAVLSACAH--GGLVEEGRRLFLSM 433
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 45/177 (25%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
I++ Y GQ+ + F +M RD V W+ +I GY + EA L M+ +P
Sbjct: 358 SIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKP 417
Query: 71 DEFTIVRILTA---------------------------------YMYCKCGDVEKAQRVL 97
EF + +L+A MYCKCG +E+A R+
Sbjct: 418 TEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477
Query: 98 RKMLRKDKFTWTAMIVGLA-------ISDPFPTI-----RPDEVTYVGVLSACTHNG 142
D +WTAMI G A + D F I RPD VT++GVLSAC+H G
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAG 534
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 45/170 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ R+ F +MP R+ V WTA+I G +R +EAL F EM S + D +T
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
L A MY KCG +E + KM
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280
Query: 103 KDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVLSACTH 140
+D +WT +I L I + P+E T+ V+S C +
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCAN 330
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYLRVNRFREA 56
M +DV+SWT I++ + GQ + A Q F +M E D + A+I G + R
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWG 337
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
L + + I+T MY KCG + + + +M R+D +W+ +I G
Sbjct: 338 EQLHALILHLGLAASLSVENSIMT--MYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYX 395
Query: 117 ----ISDPFPTI--------RPDEVTYVGVLSAC 138
+S+ F + +P E VLSAC
Sbjct: 396 QGGHVSEAFELLSWMRMEGPKPTEFALASVLSAC 429
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 52/193 (26%)
Query: 2 KNKDVISWTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 55
+N IS TD+ + + G + AR+ F +M ++D + WT +I GY+ N E
Sbjct: 39 QNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSE 98
Query: 56 ALTLFPEMQT-SNIRPDEFTIV---------------RILTAY----------------- 82
AL LF M+ S +R D F + +L Y
Sbjct: 99 ALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALL 158
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPFPT-IRPDEV 129
MY K G + + +RV +M ++ +WTA+I GL S+ + + + D
Sbjct: 159 DMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSY 218
Query: 130 TYVGVLSACTHNG 142
T+ L AC +G
Sbjct: 219 TFAIALKACADSG 231
>gi|449449673|ref|XP_004142589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Cucumis sativus]
Length = 628
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 45/185 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K D+++ ++ ++ G+ A++ F +MP RD V W ++I G ++ R+ EA F
Sbjct: 189 KQLDLVAMNLLIGNFMKIGECKFAKKVFYKMPFRDVVTWNSIIGGCVKNARYDEAFRFFR 248
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
+M TSNI+PD FT IL A Y KCG
Sbjct: 249 QMLTSNIQPDGFTFASILNACAQLGAPSNTHWVHAQMTQKKIELNSLLTCALIDAYSKCG 308
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLS 136
++ A+ + + D W MI GLAI ++ PD +T++GVL+
Sbjct: 309 SIQIAKEIFSNIPHSDTSVWNVMIKGLAIHGLAMDALSLFLRMEHESVLPDAITFLGVLT 368
Query: 137 ACTHN 141
AC H
Sbjct: 369 ACNHG 373
>gi|147771209|emb|CAN67545.1| hypothetical protein VITISV_030949 [Vitis vinifera]
Length = 598
Score = 88.2 bits (217), Expect = 9e-16, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 46/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +++ Y G +++ R+ F ++ + + W +MI GY+ EAL+L+ +Q+ I+
Sbjct: 286 TALINMYSKCGSIELGRKVFDELADENIASWNSMIYGYVECGFNIEALSLWNVIQSRKIK 345
Query: 70 PDEFTIVRILTAY----------------------------------MYCKCGDVEKAQR 95
PDE T++ +++A MY KCG +++A+
Sbjct: 346 PDEVTMLGLISACRSSGDLHQGIQINSYIESSDHLSGSTVLCNALIDMYAKCGSMDRAET 405
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACTHNG 142
V KM R+D +WT++IVG AI+ I P+ VT++GVLSAC H G
Sbjct: 406 VFSKMPRRDVISWTSIIVGYAINGEGEEALLAFRKMGAEKIEPNSVTFLGVLSACDHAG 464
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 45/167 (26%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81
+D A + F + RD V W MI GY + N R A +LF EM+ N+ D ++V +++A
Sbjct: 197 MDAAAKLFHETNVRDLVSWNTMIAGYAKNNDCRNAFSLFREMRIGNVECDRVSLVSLISA 256
Query: 82 ---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTW 108
MY KCG +E ++V ++ ++ +W
Sbjct: 257 CTNXRDLHMGKAVHAFIKVSGMEMMIHFETALINMYSKCGSIELGRKVFDELADENIASW 316
Query: 109 TAMIVG----------LAISDPFPT--IRPDEVTYVGVLSACTHNGN 143
+MI G L++ + + I+PDEVT +G++SAC +G+
Sbjct: 317 NSMIYGYVECGFNIEALSLWNVIQSRKIKPDEVTMLGLISACRSSGD 363
>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
Length = 729
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 49/187 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D ISW I+ GY+ +G +D A +F + P +D + W +I GY + AL+L
Sbjct: 308 MPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGY----KDEGALSLL 363
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM ++PD+ T+ +++ MY KC
Sbjct: 364 SEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKC 423
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVL 135
G + +A +V +L++D TW AMI A ++D + RPD T++ +L
Sbjct: 424 GLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSIL 483
Query: 136 SACTHNG 142
SAC H G
Sbjct: 484 SACAHKG 490
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+S T I+ GY+ G VD A + F MP RD V W M+DG++R +R +AL LF
Sbjct: 246 MPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLF 305
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----A 116
EM PD I Y + GD++ A R+ KD +W +I G A
Sbjct: 306 SEM------PDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGA 359
Query: 117 ISDPFPTIR----PDEVTYVGVLSACT 139
+S IR PD+ T V+S C
Sbjct: 360 LSLLSEMIRGGLKPDQATLSVVISICA 386
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++V+SW +VSGY G V AR+ F MP RD V W MI GY++ REA LF
Sbjct: 124 DRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDS 183
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M + P +L+ Y+ + G + A+ + +M ++ +W MI G A
Sbjct: 184 MPS----PPTSVCNALLSGYV--ELGYMRAAEVLFGQMQTRNPVSWNVMITGYA 231
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +VSG I + AR+ F MP R+ V W A++ GY R R EA LF
Sbjct: 60 MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N PD + Y + G V++A+ + M +D +W MI G
Sbjct: 120 ------NRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISG 167
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++SGY+ G + A F QM R+ V W MI GY R A LF EM P+
Sbjct: 195 LLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEM------PE 248
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
+ + R Y + G V+ A +V + M +D W M+ G +D
Sbjct: 249 KDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRND 296
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D + + ++S Y G + A Q F + +RD V W AMI Y EAL +F M
Sbjct: 408 HDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMM 467
Query: 64 QTSNIRPDEFTIVRILTA-----YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ RPD T + IL+A Y+Y C Q + R D ++ ++G
Sbjct: 468 TKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLG 523
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88
F +M ER+ W M+ G +R EA +F M N + +LT Y +CG
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRN----SVSWAALLTG--YARCG 110
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V +A+ + ++ ++ +W AM+ G A
Sbjct: 111 RVAEARELFNRIPDRNVVSWNAMVSGYA 138
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 85/190 (44%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTL 59
M + +V+SWT +VSGY G VD A + F MP +++ V W AMI +++ NRFREA L
Sbjct: 161 MSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFAL 220
Query: 60 FPEMQTS-NIRPDEFTIVRILTAY---------------------------------MYC 85
F M+ + D F +L+A MYC
Sbjct: 221 FRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYC 280
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYV 132
KCG ++KA V + K +W MI G A+ + + PD +T+V
Sbjct: 281 KCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFV 340
Query: 133 GVLSACTHNG 142
VL+AC H+G
Sbjct: 341 NVLTACAHSG 350
>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 550
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW ++SGY +++ AR+ F +MP+RD W+AM+ GY ++ EAL LF
Sbjct: 202 MPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLF 261
Query: 61 PEMQTSN-IRPDEFTIV---------------RILTAY------------------MYCK 86
EM T + + P+E +V R L +Y MY K
Sbjct: 262 MEMVTGDKMIPNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGK 321
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG + A V M ++ +W +MI GLA++ F P+ +T++ +
Sbjct: 322 CGSILDAAGVFNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIAL 381
Query: 135 LSACTHNG 142
L+ C+H+G
Sbjct: 382 LTGCSHSG 389
>gi|255561307|ref|XP_002521664.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539055|gb|EEF40651.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 574
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 80/187 (42%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW I+SGY+N G++D A+ +F +MPE++ + W MI G + E L LF
Sbjct: 358 MPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNILSWVVMISGLAQNGFGEEGLKLF 417
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ P ++ +T+ MY +C
Sbjct: 418 NQMKLRGFEPCDYAFAGAITSCSMLGLLEHGRQLHAQLVRFGFDSSLSAGNALITMYARC 477
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G VE A+ + M D +W AMI L I PD +T++ VL
Sbjct: 478 GVVEAARTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPDRITFLTVL 537
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 538 SACSHAG 544
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 37/151 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT I++GY+ +D AR+ F M E+ V+W AMI GY+ ++EAL +F
Sbjct: 222 MPVRDELSWTTIITGYVKNDDLDAAREVFDGMREKLVVVWNAMISGYMHRGLYQEALEMF 281
Query: 61 PEMQTSNIRPDEFTIVRILTA-------------------------------------YM 83
+M + ++ DEFT I++A +
Sbjct: 282 RKMYLAGLKLDEFTYTSIISACANAGFLQHGKQVHAYILKTEAMPSPDFSLPVNNALVTL 341
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y KCG V++AQ V M +D +W ++ G
Sbjct: 342 YWKCGKVDEAQEVFNNMPVRDLVSWNTILSG 372
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 45/166 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D+++ T +++ Y G + +A++ F + P RD V++ AMI Y N A+ LF +
Sbjct: 82 DIVARTTLINAYSATGHLKLAKEMFYETPLIMRDAVIYNAMITAYSHNNDGHAAIELFCD 141
Query: 63 MQTSNIRPDEFTIVRILTAY----------------------------------MYCKCG 88
M+ ++ RPD FT +L A +Y KC
Sbjct: 142 MKRNDFRPDNFTFTSVLGALALVAENERHCQQLHCTVVKSGTWFVTSVLNALISVYVKCA 201
Query: 89 D---------VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
+ A+R+ +M +D+ +WT +I G +D R
Sbjct: 202 SSPSVISSSLMGAARRLFDEMPVRDELSWTTIITGYVKNDDLDAAR 247
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+V+ Y G+VD A++ F MP RD V W ++ GYL R EA T F EM NI
Sbjct: 338 LVTLYWKCGKVDEAQEVFNNMPVRDLVSWNTILSGYLNAGRMDEAKTFFEEMPEKNI 394
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G V+ AR F MP D V W AMI + +A+ LF EM I PD
Sbjct: 470 LITMYARCGVVEAARTLFLSMPCVDSVSWNAMIAALGQHGYGVQAIELFEEMLIEGILPD 529
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
T + +L+A + G V++ R M R + T
Sbjct: 530 RITFLTVLSACSH--AGLVKEGHRYFNSMSRVYRIT 563
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV ++S Y +VDIA + F + + V W AMI GY + R EA+ F +
Sbjct: 409 GSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCK 468
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
MQ NI+PD FT+V ++ A MY KCG
Sbjct: 469 MQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGA 528
Query: 90 VEKAQRVLRKMLRKDKFTWTAMI-------VGLAISDPF-----PTIRPDEVTYVGVLSA 137
V A+++ M + TW AMI +G A + F I+P+EVT++ VLSA
Sbjct: 529 VHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSA 588
Query: 138 CTHNG 142
C+H+G
Sbjct: 589 CSHSG 593
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 74/184 (40%), Gaps = 45/184 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V + T +V+ Y V+ A + F +MPERD V W +I GY + + AL L MQ
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
RPD TIV IL A MY KCG V
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG-LAISDPFPTIR-----PDE------VTYVGVLSACT 139
A+ + +M K +W +MI G + DP + DE VT +G L AC
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388
Query: 140 HNGN 143
G+
Sbjct: 389 DLGD 392
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 62/173 (35%), Gaps = 45/173 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G V AR F +M + V W +MIDGY++ A+ +F +M +
Sbjct: 315 TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVE 374
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
T++ L A MY KC V+ A +
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434
Query: 97 LRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+ K +W AMI+G A + I+PD T V V+ A
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487
>gi|115450020|ref|NP_001048611.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|48716334|dbj|BAD22946.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
Japonica Group]
gi|113538142|dbj|BAF10525.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|125584254|gb|EAZ25185.1| hypothetical protein OsJ_08985 [Oryza sativa Japonica Group]
Length = 500
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV SWT +++ Y ++ AR F MP + + W A++ Y+ F EA+ +F EM
Sbjct: 152 RDVCSWTSLLTAYGRAARLHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAVDVFQEM 211
Query: 64 QTSNIRPDEFTIVRILTAY-----------------------------------MYCKCG 88
+ +RP+ I+ +L A MY KCG
Sbjct: 212 LRARVRPNRAVILSVLAACGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVDMYAKCG 271
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPF-----PTIRPDEVTYVGVLS 136
+E A++V M +D F +TAM+ GL+ + F +RP+EVT++ VLS
Sbjct: 272 SLETARQVFSGMAERDVFAYTAMVSGLSDHGRCVEAIELFGRMQEEGVRPNEVTFICVLS 331
Query: 137 ACTHNG 142
AC G
Sbjct: 332 ACGRAG 337
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD + T +V Y G ++ ARQ F+ M ERD +TAM+ G R EA+ LF M
Sbjct: 255 KDGMVATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSGLSDHGRCVEAIELFGRM 314
Query: 64 QTSNIRPDEFTIVRILTAYMYC-KCGDVEKAQRVLRKM 100
Q +RP+E T + +L+A C + G V +A+ +L M
Sbjct: 315 QEEGVRPNEVTFICVLSA---CGRAGLVGRAREILGSM 349
>gi|359472798|ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 324
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K+ ++W +++ Y G V AR F QMP RD W+AM+ GY+ + L LF
Sbjct: 1 MPHKNTVTWNTMITAYSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALF 60
Query: 61 PEMQTS-NIRPDEFTIVRILTAY-----------------------------------MY 84
EM + +RPD+ T+ +L+ MY
Sbjct: 61 REMVVNEGLRPDKVTLGSVLSGCARMGSLGLLVGRSIHGFTAKNGWELSVDLGTVLVDMY 120
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYV 132
KCG ++ A RV M K+ +WTA+I G A ++P+E+T+
Sbjct: 121 AKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFT 180
Query: 133 GVLSACTHNG 142
G+LSAC G
Sbjct: 181 GILSACAQAG 190
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G + A + F M E++ WTA+I G + +EAL++F MQ ++
Sbjct: 114 TVLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVK 173
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T IL+A + G VE+ ++ K+
Sbjct: 174 PNEMTFTGILSA--CAQAGLVEEGRKYFNKI 202
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVT 130
Y K GDV+KA+ V +M +D +W+AM+ G + + +RPD+VT
Sbjct: 16 YSKSGDVKKARLVFEQMPLRDLASWSAMVAGYMYGGEWHSGLALFREMVVNEGLRPDKVT 75
Query: 131 YVGVLSACTHNGNETFVIN 149
VLS C G+ ++
Sbjct: 76 LGSVLSGCARMGSLGLLVG 94
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +W ++ GY ++ A F+QM ERD + WT M++ Y + +F EAL +F
Sbjct: 102 MPEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVF 161
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + I PDE T+ +++A MY KC
Sbjct: 162 NQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNGFDLDVYIGSSLIDMYAKC 221
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G ++++ V K+ K+ F W ++I GLA + F I+P+ VT++ VL
Sbjct: 222 GSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMGREKIKPNGVTFISVL 281
Query: 136 SACTHNG 142
+AC H G
Sbjct: 282 NACAHAG 288
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G++ +++ F +MPERD W M+ R+ A LF M
Sbjct: 49 TALVDFYSTVGRIIESKKVFDEMPERDIFAWATMVTSLARIGDMSSARRLFDMM------ 102
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------ 123
P++ T Y Y K D+E A+ + +M +D +WT M+ A + F
Sbjct: 103 PEKNTAAWNTLIYGYSKLRDLESAEFLFSQMHERDIISWTTMVNCYAQNKKFGEALVVFN 162
Query: 124 ------IRPDEVTYVGVLSACTHNG 142
I PDEVT V+SAC H G
Sbjct: 163 QMIKTGICPDEVTMATVISACAHLG 187
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G +D + F ++ E++ W ++I+G +EAL +F +M
Sbjct: 207 DVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFRKMG 266
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99
I+P+ T + +L A + G VE+ + +K
Sbjct: 267 REKIKPNGVTFISVLNACAH--AGLVEEGLALRKK 299
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ ++W +SG I GQ++ AR F +M R V WT +IDGY R+N+ +AL LF
Sbjct: 175 MPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNKPLKALALF 234
Query: 61 PEM-QTSNIRPDEFTI--------------------------------VRILTAY--MYC 85
+M + I P+E T+ +RI+ A +Y
Sbjct: 235 RKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIVNALIDLYA 294
Query: 86 KCGDVEKAQRVLRKM--LRKDKFTWTAMIVGLAI-------SDPFPT-----IRPDEVTY 131
KCG +E A + +M R++ +W +++ G A D F +RP+ V +
Sbjct: 295 KCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRPNHVAF 354
Query: 132 VGVLSACTHNG 142
+ +LSAC+H+G
Sbjct: 355 LSILSACSHSG 365
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
++ Y G ++ A F++MP+ R+ V W +++ GY REA+ F +M+ + +R
Sbjct: 289 LIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGVR 348
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
P+ + IL+A + G VE+ KM+
Sbjct: 349 PNHVAFLSILSACSH--SGLVEEGLEFFGKMV 378
>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 76/218 (34%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDG-------------- 46
M +D+ +W ++SGY+ G ++ AR F +MP RD V W MIDG
Sbjct: 250 MYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFARIKDVSMAAKFF 309
Query: 47 -----------------YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA-------- 81
YLR ++ + L F M + PDE ++V +LTA
Sbjct: 310 DEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSVLTACAELKMLD 369
Query: 82 -------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
MY KCG ++ A+ V KM K +W +MI+G
Sbjct: 370 QGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSVVSWNSMIIGYG 429
Query: 117 IS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
I + F + P++ T++ VLSAC+H+G
Sbjct: 430 IHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSG 467
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 24/150 (16%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++SW ++ GY+ G++ +AR+ F +M ERD W +MI GY+ V A LF +M
Sbjct: 223 DLVSWNSMIDGYVKNGELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMP 282
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV----------- 113
+ ++ I + + DV A + +M ++ +W M+
Sbjct: 283 SRDVVSWNCMIDG------FARIKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDC 336
Query: 114 ----GLAISDPFPTIRPDEVTYVGVLSACT 139
+ + F PDE + V VL+AC
Sbjct: 337 LRFFDMMVGGDF---VPDEASLVSVLTACA 363
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+ AR F D V W +MIDGY++ A +F EM +I FT ++
Sbjct: 207 GRTSDARMVFDNGFVLDLVSWNSMIDGYVKNGELGLAREIFDEMYERDI----FTWNSMI 262
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ Y+ GD+E A+ + KM +D +W MI G A
Sbjct: 263 SGYV--GVGDMEAARGLFDKMPSRDVVSWNCMIDGFA 297
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V SW +++GY+ +D A + F +MPERD W+ MI GY + + AL LF +M
Sbjct: 394 ENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKM 453
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
S I+P+E T+V +L+A MY KCG +
Sbjct: 454 VASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSI 513
Query: 91 EKAQRVLRKMLRKDKFT--WTAMIVGLAISDPFP------------TIRPDEVTYVGVLS 136
A V ++ K W A+I GLA+ I+ + +T++GVL+
Sbjct: 514 NNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLT 573
Query: 137 ACTHNG 142
AC H G
Sbjct: 574 ACCHVG 579
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 76/218 (34%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+++SW +++GY G VD AR F ++P +D V W +IDGY+RV R EAL ++
Sbjct: 259 MPEKNIVSWNVMLNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMY 318
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M ++ P++ +V +++ ++Y C
Sbjct: 319 RSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAAC 378
Query: 88 GD-------------------------------VEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G +++A + +M +D F+W+ MI G
Sbjct: 379 GRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYT 438
Query: 117 ISDP------------FPTIRPDEVTYVGVLSACTHNG 142
++ I+P+EVT V VLSA +G
Sbjct: 439 QNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSG 476
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 33/144 (22%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D +S+ ++SGY+ GQ+D A + F +MP + V +T MI G+ + + +A+ LF +M
Sbjct: 130 SDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQM 189
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + P+E TI +++AY MYC C +
Sbjct: 190 RNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSL 249
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVG 114
+A+ + +M K+ +W M+ G
Sbjct: 250 VEARALFDEMPEKNIVSWNVMLNG 273
>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
Length = 1070
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 88/171 (51%), Gaps = 32/171 (18%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ + EA ++F EM
Sbjct: 106 KNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEM 165
Query: 64 QTSNIR-PDEFTIVRILTAY-------------------MYCKCGDVEKAQRVLRKMLRK 103
+ + D + I+ A MY KC DV A+ + +M +
Sbjct: 166 RRERVDILDPLVLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHR 225
Query: 104 DKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSACTHNG 142
D +WT++IVG LA+ D + ++P+EVT+VG++ AC+H G
Sbjct: 226 DVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVG 276
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y V A+ F++M RD V WT++I G + + +AL L+ +M + ++P+
Sbjct: 202 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 261
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAISD------- 119
E T V ++ Y G VEK + + + M +R +T ++ L S
Sbjct: 262 EVTFVGLI--YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 319
Query: 120 -----PFPTIRPDEVTYVGVLSACTHNG 142
PFP PDE T+ +LSAC G
Sbjct: 320 LIHTMPFP---PDEPTWAALLSACKRQG 344
>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04750, mitochondrial; Flags: Precursor
gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 661
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN-RFREALTL 59
MK KD+ SW +V G++ G ++ A+ F QMP+RD V W +++ GY + R L
Sbjct: 295 MKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVREL 354
Query: 60 FPEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYC 85
F EM ++PD T+V +++ MYC
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYC 414
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
KCG +E+A V + KD WT+MI GLA + P+ VT +
Sbjct: 415 KCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLA 474
Query: 134 VLSACTHNG 142
VL+AC+H+G
Sbjct: 475 VLTACSHSG 483
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 74/214 (34%), Gaps = 80/214 (37%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W +V Y+ G +A + FA+MP D + MI GY + EAL L+ +M + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 69 RPDEFTIVRILTAY-----------------------------------MYCKCGDVEKA 93
PDE+T++ +L MY KC + A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 94 QRVLRKMLRKDKFTWTAMIVGL----------AISDPFP--------------------- 122
+R M +KD +W M+VG A+ D P
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348
Query: 123 --------------TIRPDEVTYVGVLSACTHNG 142
++PD VT V ++S +NG
Sbjct: 349 RTVRELFYEMTIVEKVKPDRVTMVSLISGAANNG 382
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + ++ Y G ++ A F E+D LWT+MI G ++AL LF MQ
Sbjct: 402 DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT------AMIVGLA-- 116
+ P+ T++ +LTA + G VE+ V M KDKF + +V L
Sbjct: 462 EEGVTPNNVTLLAVLTACSH--SGLVEEGLHVFNHM--KDKFGFDPETEHYGSLVDLLCR 517
Query: 117 ----------ISDPFPTIRPDEVTYVGVLSAC 138
+ P +RP + + +LSAC
Sbjct: 518 AGRVEEAKDIVQKKMP-MRPSQSMWGSILSAC 548
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT +++GY+ QVDIAR+ F MPE++ V WTAM+ GY R EA LF
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELF 338
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-----VGL 115
M ++ I+ + + G+V KA++V +M KD+ TW+AMI GL
Sbjct: 339 NAMPIKSVVACNAMIL------CFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392
Query: 116 AIS--DPF-----PTIRPDEVTYVGVLSACTHNGN 143
+ + F IRP+ + + VLS C N
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLAN 427
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 45/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K V++ ++ + G+V ARQ F QM E+D W+AMI Y R +AL LF M
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMM 403
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
Q IRP+ +++ +L+ MY KCG++
Sbjct: 404 QREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNL 463
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
KA++V + KD W ++I G A F I PD+VT+VGVLSAC
Sbjct: 464 AKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC 523
Query: 139 THNGN 143
++ GN
Sbjct: 524 SYTGN 528
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ISW +VSGYIN G ++ AR+ F +MPER+ V WTAM+ GY++ EA TLF
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLF 214
Query: 61 PEMQTSNI-------------------------RPDEFTIVRILTAYMYCKCGDVEKAQR 95
+M N+ P++ + R YC+ G + +A+
Sbjct: 215 WQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARM 274
Query: 96 VLRKMLRKDKFTWTAMIVG------LAISDPFPTIRPD--EVTYVGVLSACTHNG 142
+ +M R++ +WT MI G + I+ + P+ EV++ +L T+ G
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCG 329
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++S YI G + A+Q F + +D V+W ++I GY + EAL +F +M
Sbjct: 446 DVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMH 505
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
S I PD+ T V +L+A Y G+V+K + M K
Sbjct: 506 FSGIMPDDVTFVGVLSACSY--TGNVKKGLEIFNSMETK 542
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
+IS +++ Y GQ++ AR F +M +++ + W +++ GY + R +EA +F +M
Sbjct: 98 IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N TI Y G + +A+ V +M ++ +WTAM+ G
Sbjct: 158 RN------TISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRG 200
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 81/185 (43%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D +++ Y ++D AR+ F ++ ERD V W +MI GY ++ REA+ LF E
Sbjct: 159 NNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLFME 218
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+ P E T+V IL A MY KCGD
Sbjct: 219 MREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGKCGD 278
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPT---------IRPDEVTYVGVLSA 137
+ A+RV M KD TW AMI G A SD T I P+E+T V VLSA
Sbjct: 279 LMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSA 338
Query: 138 CTHNG 142
C G
Sbjct: 339 CASIG 343
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 78/175 (44%), Gaps = 46/175 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G + AR+ F M E+D V W AMI GY + EA+TLF M+ + I
Sbjct: 267 SALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFNVMREAGIT 326
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
P+E T+V +L+A MY KCG ++ A RV
Sbjct: 327 PNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAKCGSLDNALRV 386
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPF-------------PTIRPDEVTYVGVLSAC 138
M K++ +W AMI LA T+RP+++T++GV +AC
Sbjct: 387 FENMPHKNEVSWNAMISALAFHGRAREALSLFSRMLNGSTVRPNDITFIGVFAAC 441
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV + +V Y G +D A + F MP ++ V W AMI R REAL+LF M
Sbjct: 362 HDVYVASALVDMYAKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFSRM 421
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCG 88
S +RP++ T + + A C+ G
Sbjct: 422 LNGSTVRPNDITFIGVFAA---CRFG 444
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 62/165 (37%), Gaps = 46/165 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNR-FREALTLFPEMQTSNIRPDEFTIVRILTA-- 81
A F QMP + + MI G R + A+ L+ +M++ ++P+ FT + +
Sbjct: 79 ASLLFTQMPNPNDYAFNVMIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCA 138
Query: 82 -------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110
MY KC ++ A++V ++L +D +W +
Sbjct: 139 NLVALHCGQIAHSLVLKMGFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNS 198
Query: 111 MIVG------------LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
MI G L + P E+T V +L AC G+
Sbjct: 199 MISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGD 243
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + V +W +++G+ G +D+A + F MP R+ V WT MI GY R ++ EAL LF
Sbjct: 144 MPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLF 203
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M Q + P+ T+ I A+ MY K
Sbjct: 204 LRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAK 263
Query: 87 CGDVEKAQRVLRKMLR-KDKFTWTAMIVGLAI-SDPFPTIR-----------PDEVTYVG 133
CG ++ A +V ++ ++ +W +MI+GLA+ + T++ PD+VT+VG
Sbjct: 264 CGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVG 323
Query: 134 VLSACTHNG 142
+L ACTH G
Sbjct: 324 LLLACTHGG 332
Score = 40.0 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 17/147 (11%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G++D+A + F ++ R+ W +MI G + L L+ +M P
Sbjct: 257 VLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSP 316
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA--ISDPF 121
D+ T V +L A + G VEK + + + M + + + ++G A + + +
Sbjct: 317 DDVTFVGLLLACTHG--GMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQLREAY 374
Query: 122 PTI-----RPDEVTYVGVLSACTHNGN 143
I +PD V + +L AC+ + N
Sbjct: 375 EVIQRMPMKPDSVIWGALLGACSFHDN 401
>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +++GY+ G ++ A F QMPER++ W AMI G++ A + F
Sbjct: 48 MAERNVVSWNSMLAGYLKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFF 107
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M P + + + Y KCGDV+ A + ++ KD + AMI A
Sbjct: 108 DAM------PQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 161
Query: 117 ----------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ +P+ ++PDE+T V+SAC+ G+ F
Sbjct: 162 PNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRF 201
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 87/189 (46%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +SW ++SGY G VD A + F Q+ +D +L+ AMI Y + +R EAL LF
Sbjct: 110 MPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLF 169
Query: 61 PEMQTS--NIRPDEFTIVRILTA---------------YM------------------YC 85
M N++PDE T+ +++A YM Y
Sbjct: 170 NNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYA 229
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVG 133
KCG ++KA + + +KD +TAMI+G I+ I P+ +T++G
Sbjct: 230 KCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIG 289
Query: 134 VLSACTHNG 142
+L+A H G
Sbjct: 290 LLTAYNHAG 298
>gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 82/183 (44%), Gaps = 46/183 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ++ ++++ Y G +D A + F++ E+D V WT MI GY + + AL LF EM
Sbjct: 257 DQVTVSNVLCAYFQSGYIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENALMLFNEM- 315
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
N+RPD +TI ++++ MYCKCG
Sbjct: 316 LENVRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDLLVSTSLVDMYCKCGVTS 375
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYVGVLSACT 139
A V M + +W AM+ G LA+ + IRPD +T+VGVLSAC
Sbjct: 376 DAWVVFSMMPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRPDNITFVGVLSACN 435
Query: 140 HNG 142
H G
Sbjct: 436 HAG 438
Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 13/146 (8%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V W + Y ++D AR F ++ ++ V W +MI GYL+ +F + LF EMQ
Sbjct: 191 NVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFEIGINLFHEMQ 250
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG---------- 114
++PD+ T+ +L AY + G ++ A ++ + KDK WT MIVG
Sbjct: 251 GLGLKPDQVTVSNVLCAYF--QSGYIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENA 308
Query: 115 -LAISDPFPTIRPDEVTYVGVLSACT 139
+ ++ +RPD T V+S+C
Sbjct: 309 LMLFNEMLENVRPDSYTISSVVSSCA 334
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW ++S Y G V+ R F MP RD V + +I G+ + R +A+ F
Sbjct: 85 MSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVSYNTVITGFAKNGRAGKAVEAF 144
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
MQT +P E+T V +L A MY K
Sbjct: 145 VRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGRILTGNYLGGNVFIWNALTDMYAK 204
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGV 134
C ++++A+ + ++ K+ +W +MI G + F ++PD+VT V
Sbjct: 205 CKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFEIGINLFHEMQGLGLKPDQVTVSNV 264
Query: 135 LSACTHNG 142
L A +G
Sbjct: 265 LCAYFQSG 272
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D++ T +V Y G A F+ MP R V W AM+ GY R + EAL L+ +
Sbjct: 355 DDDLLVSTSLVDMYCKCGVTSDAWVVFSMMPARSVVSWNAMLGGYARNGQDLEALALYEK 414
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVE 91
M NIRPD T V +L+A + D E
Sbjct: 415 MFQENIRPDNITFVGVLSACNHAGLFDEE 443
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV + ++ Y N Q+D + + F + D VLW +M+ GY + EAL +F
Sbjct: 202 DNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRR 261
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M + +RP T ++ A+ MYCKCG+
Sbjct: 262 MLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGN 321
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSA 137
V+ A+RV + D +WTAMI+G A+ P ++P+ +T++ VL+A
Sbjct: 322 VDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTA 381
Query: 138 CTHNG 142
C+H G
Sbjct: 382 CSHAG 386
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 15 GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74
G + + R+ F +M ERD V W +I G R +EAL++ EM PD FT
Sbjct: 113 GGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFT 172
Query: 75 IVRILTAYMYCKCGDVEKAQRV----LRKMLRKDKFTWTAMI 112
+ +L ++ +C D+++ V ++ D F +++I
Sbjct: 173 LSTVLP--IFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLI 212
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT +++GY+ QVDIAR+ F MPE++ V WTAM+ GY R EA LF
Sbjct: 279 MPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELF 338
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-----VGL 115
M ++ I+ + + G+V KA++V +M KD+ TW+AMI GL
Sbjct: 339 NAMPIKSVVACNAMIL------CFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392
Query: 116 AIS--DPF-----PTIRPDEVTYVGVLSACTHNGN 143
+ + F IRP+ + + VLS C N
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLAN 427
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 45/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K V++ ++ + G+V ARQ F QM E+D W+AMI Y R +AL LF M
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMM 403
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
Q IRP+ +++ +L+ MY KCG++
Sbjct: 404 QREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNL 463
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
KA++V + KD W ++I G A F I PD+VT+VGVLSAC
Sbjct: 464 AKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSAC 523
Query: 139 THNGN 143
++ GN
Sbjct: 524 SYTGN 528
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 33/175 (18%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ ISW +VSGYIN G ++ AR+ F +MPER+ V WTAM+ GY++ EA TLF
Sbjct: 155 MSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLF 214
Query: 61 PEMQTSNI-------------------------RPDEFTIVRILTAYMYCKCGDVEKAQR 95
+M N+ P++ + R YC+ G + +A+
Sbjct: 215 WQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARM 274
Query: 96 VLRKMLRKDKFTWTAMIVG------LAISDPFPTIRPD--EVTYVGVLSACTHNG 142
+ +M R++ +WT MI G + I+ + P+ EV++ +L T+ G
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCG 329
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++S YI G + A+Q F + +D V+W ++I GY + EAL +F +M
Sbjct: 446 DVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMH 505
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
S I PD+ T V +L+A Y G+V+K + M K
Sbjct: 506 FSGIMPDDVTFVGVLSACSY--TGNVKKGLEIFNSMETK 542
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
+IS +++ Y GQ++ AR F +M +++ + W +++ GY + R +EA +F +M
Sbjct: 98 IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE 157
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N TI Y G + +A+ V +M ++ +WTAM+ G
Sbjct: 158 RN------TISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRG 200
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV + ++ Y N Q+D + + F + D VLW +M+ GY + EAL +F
Sbjct: 519 DNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRR 578
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M + +RP T ++ A+ MYCKCG+
Sbjct: 579 MLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGN 638
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSA 137
V+ A+RV + D +WTAMI+G A+ P ++P+ +T++ VL+A
Sbjct: 639 VDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTA 698
Query: 138 CTHNG 142
C+H G
Sbjct: 699 CSHAG 703
Score = 49.3 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 26 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85
R+ F +M ERD V W +I G R +EAL++ EM PD FT+ +L ++
Sbjct: 441 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLP--IFA 498
Query: 86 KCGDVEKAQRV----LRKMLRKDKFTWTAMI 112
+C D+++ V ++ D F +++I
Sbjct: 499 ECADIKRGMVVHGYAIKNGFDNDVFVGSSLI 529
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D+ + ++ Y+ G+++ AR+ F+++P D V WT MI G + + AL + +
Sbjct: 1170 NLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQ 1229
Query: 63 MQTSNIRPDEFT-----------------------IVRILTAY----------MYCKCGD 89
M+ S ++PDE+T IV++ A+ MY KCG+
Sbjct: 1230 MRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGN 1289
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
+E A+ + ++ + +W AMIVGLA + PD VT++GVLSA
Sbjct: 1290 IEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSA 1349
Query: 138 CTHNG 142
C+H+G
Sbjct: 1350 CSHSG 1354
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 45/180 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D T ++ Y RG+++ A F D W A++ GY+ F +AL L+ MQ
Sbjct: 1071 DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S R D+ T+V A MY KCG++E
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEME 1190
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACT 139
A+RV ++ D WT MI G + ++PDE T+ ++ AC+
Sbjct: 1191 SARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV +V+ Y G + AR F M RD VLW M+ Y+ EA+ LF E
Sbjct: 794 DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFH 853
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94
+ RPD+ T+ R L+ + CK +E Q
Sbjct: 854 RTGFRPDDVTL-RTLSRVVKCKKNILELKQ 882
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 64/173 (36%), Gaps = 46/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y+ G V AR F QM E D + W MI G ++ +F + ++ PD
Sbjct: 976 LINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPD 1035
Query: 72 EFTIVRILTA--------YM--------------------------YCKCGDVEKAQRVL 97
+FT+ +L A Y+ Y K G +E+A+ +
Sbjct: 1036 QFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF 1095
Query: 98 RKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSAC 138
D +W A++ G +S FP R D++T V A
Sbjct: 1096 VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAA 1148
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 60/155 (38%), Gaps = 22/155 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALT 58
DVI W +S ++ RG+ A F M D + + M+ +N L
Sbjct: 897 GSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLN----CLE 952
Query: 59 LFPEMQTSNIRP--DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
L ++ +R D+ V MY K G V +A+ V +M D +W MI G
Sbjct: 953 LGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCT 1012
Query: 117 ISDPFP------------TIRPDEVTYVGVLSACT 139
+S ++ PD+ T VL AC+
Sbjct: 1013 LSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACS 1047
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 76/177 (42%), Gaps = 45/177 (25%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
I++ Y GQ+ + F +M RD V W+ +I GY + EA L M+ +P
Sbjct: 358 SIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKP 417
Query: 71 DEFTIVRILTA---------------------------------YMYCKCGDVEKAQRVL 97
EF + +L+A MYCKCG +E+A R+
Sbjct: 418 TEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477
Query: 98 RKMLRKDKFTWTAMIVGLA-------ISDPFPTI-----RPDEVTYVGVLSACTHNG 142
D +WTAMI G A + D F I RPD VT++GVLSAC+H G
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAG 534
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 65/170 (38%), Gaps = 45/170 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ R+ F +MP R+ V WTA+I G +R +EAL F EM S + D +T
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
L A MY KCG +E + KM
Sbjct: 221 AIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280
Query: 103 KDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVLSACTH 140
+D +WT +I L I + P+E T+ V+S C +
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCAN 330
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYLRVNRFREA 56
M +DV+SWT I++ + GQ + A Q F +M E D + A+I G + R
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWG 337
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
L + + I+T MY KCG + + + +M R+D +W+ +I G +
Sbjct: 338 EQLHALILHLGLAASLSVENSIMT--MYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYS 395
Query: 117 ----ISDPFPTI--------RPDEVTYVGVLSAC 138
+S+ F + +P E VLSAC
Sbjct: 396 QGGHVSEAFELLSWMRMEGPKPTEFALASVLSAC 429
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 52/193 (26%)
Query: 2 KNKDVISWTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE 55
+N IS TD+ + + G + AR+ F +M ++D + WT +I GY+ N E
Sbjct: 39 QNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSE 98
Query: 56 ALTLFPEMQT-SNIRPDEFTIV---------------RILTAY----------------- 82
AL LF M+ S +R D F + +L Y
Sbjct: 99 ALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALL 158
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPFPT-IRPDEV 129
MY K G + + +RV +M ++ +WTA+I GL S+ + + + D
Sbjct: 159 DMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSY 218
Query: 130 TYVGVLSACTHNG 142
T+ L AC +G
Sbjct: 219 TFAIALKACADSG 231
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +++ Y G ++ A + F D V WTAMI+GY RE + LF ++ +R
Sbjct: 458 SALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLR 517
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----DKFTWTAMIVGLA----ISDP 120
PD T + +L+A + G V+ R M +K K + MI L +SD
Sbjct: 518 PDSVTFIGVLSACSH--AGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDA 575
Query: 121 FPTIRP-----DEVTYVGVLSACTHNGN 143
I D+V + +L AC +G+
Sbjct: 576 EHMIEAMPFHRDDVVWSTLLRACRVHGD 603
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 82/189 (43%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW ++ GY N G ++ + F +M ER+ W +I GY + R E L F
Sbjct: 113 MPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSF 172
Query: 61 PEM-QTSNIRPDEFTIVRILTAY----------------------------------MYC 85
M ++ P++ T+ +L+A MY
Sbjct: 173 KRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYG 232
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVG 133
KCG +E A V + + R+D +W MI GLA D F I PD+VT+VG
Sbjct: 233 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVG 292
Query: 134 VLSACTHNG 142
VL AC H G
Sbjct: 293 VLCACKHMG 301
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 19/155 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+ WT +++GY+ + AR+YF PERD VLW M+ GY+ + EA +LF
Sbjct: 51 MVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLF 110
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
+M ++ + +L Y GD+E +RV +ML ++ F+W +I G A
Sbjct: 111 DQMPCRDV----MSWNTVLEG--YANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNGR 164
Query: 117 ISDPFPTIR---------PDEVTYVGVLSACTHNG 142
+S+ + + P++ T VLSAC G
Sbjct: 165 VSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLG 199
>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
Length = 623
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++WT +V G G+VD AR F MPER+ V W AMI GY R +R EAL LF
Sbjct: 193 MPERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLF 252
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-------- 112
+M +I ++T ++ K D+++A+ + +M ++ TWT M+
Sbjct: 253 MKMPERDIASCNI----MVTGFIQNK--DLKRARELFDEMPERNVVTWTTMMNGYLKGKQ 306
Query: 113 ----VGLAISDPFPTIRPDEVTYVGVLSACT 139
+GL RP++VT++G L AC+
Sbjct: 307 SELALGLFSGMLMAGTRPNQVTFLGALDACS 337
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ S +V+G+I + AR+ F +MPER+ V WT M++GYL+ + AL LF
Sbjct: 255 MPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLF 314
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M + RP++ T + L A +Y KC
Sbjct: 315 SGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKC 374
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV-----GLAISDPF-------PTIRPDEVTYVGVL 135
G++ A+++ KD +W +I G+ I RP++VTYV +L
Sbjct: 375 GEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLL 434
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 435 SACSHSG 441
Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++WT ++SGY VD A F +MP+R+ V W M++ Y R +A LF M
Sbjct: 103 RNVVTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRM 162
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ + ++ + G V+KA+ + +M +D WT M+ G+A S
Sbjct: 163 PVRDAGSWNILLATLV------RSGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDE 216
Query: 124 IR 125
R
Sbjct: 217 AR 218
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ +AR+ F E+D + W +I Y EA+ L+ +MQ + RP++ T
Sbjct: 371 YAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTY 430
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVGLA--ISDP-----F 121
V +L+A + G V++ ++ M +R + +T + A + D +
Sbjct: 431 VVLLSACSH--SGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHY 488
Query: 122 PTIRPDEVT-YVGVLSACTHNGNETF 146
I+P + + +L C +GNE+
Sbjct: 489 LKIKPASGSVWSALLGGCNAHGNESI 514
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V AR+ F P+ D V WTA++ Y R R+A LF RPD V
Sbjct: 56 GRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFD-------RPDARRNVVTW 108
Query: 80 TAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
TA + Y + V++A+ + ++M +++ +W M+ A +
Sbjct: 109 TALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAA 149
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 44/176 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +++ Y G +D AR+ F QM ++D V W AMI Y + + EA LF EM+ + +
Sbjct: 269 SKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVS 328
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T+ +L+A MY KCG +E+A RV
Sbjct: 329 PDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRV 388
Query: 97 LRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M K++ TW AMI A + D P + P +VT++GVLSAC H G
Sbjct: 389 FEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQMP-VPPSDVTFIGVLSACVHAG 443
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 46/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ D IS + I+ Y G V AR+ F ++ +R V W +MI GY R ++A+ LF
Sbjct: 160 LERDDHISHSLIMM-YAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLF 218
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ PDE T+V +L A MY KC
Sbjct: 219 RKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGKC 278
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFP--------TIRPDEVTYVGVL 135
GD++ A+RV +M++KD+ W AMI + S+ F + PD T VL
Sbjct: 279 GDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVL 338
Query: 136 SACTHNG 142
SAC G
Sbjct: 339 SACGSVG 345
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G ++ A + F MP ++ W AMI Y +EAL LF +M +
Sbjct: 370 TGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDQMP---VP 426
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMI-----VGL---- 115
P + T + +L+A ++ G V++ R +M L +T +I GL
Sbjct: 427 PSDVTFIGVLSACVH--AGLVDQGCRYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEA 484
Query: 116 -AISDPFPTIRPDEVTYVGVLSAC 138
+ FP +PDE+ +L AC
Sbjct: 485 WEFMERFPG-KPDEIMLAAILGAC 507
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 46/175 (26%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIRPDEFTI 75
+ G + A + E ++ + MI G + N AL+L+ M+ S ++PD FT
Sbjct: 73 VELGDFNYASFLLSVTEEPNHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTY 132
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
+ A MY KCG V A++V ++
Sbjct: 133 NFVFIACGKREEIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITD 192
Query: 103 KDKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVGVLSACTHNGNET 145
+ +W +MI G + D R PDE T V +L AC H G+ T
Sbjct: 193 RVTVSWNSMISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLT 247
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
I+ Y ++ A++ F ++ E+D + WT+M+ G + F+EAL LF +MQ + I D
Sbjct: 254 ILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELD 313
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T+V +L+A MY KCG ++ A +V R
Sbjct: 314 EITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFR 373
Query: 99 KMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACTHNG 142
+M ++ FTW A+I GLA+ + PD+VT++ +L AC+H G
Sbjct: 374 RMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAG 429
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 76/184 (41%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM- 63
D+ ++ Y N G A F + RD V W MI+ +L +A L EM
Sbjct: 145 DLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMT 204
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ N+RPDE T+V ++ A MYCKC D+
Sbjct: 205 KLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDI 264
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSAC 138
E AQ V ++ KD +WT+M+ GLA S F I DE+T VGVLSAC
Sbjct: 265 ESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSAC 324
Query: 139 THNG 142
G
Sbjct: 325 AQTG 328
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 22/158 (13%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N D++ T +V Y G +D+A Q F +M R+ W A+I G +A++LF +
Sbjct: 346 NCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQ 405
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV--------- 113
M+ + PD+ T + +L A + G V++ + + M K+KF +
Sbjct: 406 MEHDKLMPDDVTFIALLCACSH--AGLVDEGLAMFQAM--KNKFQIEPRMEHYGCVVDLL 461
Query: 114 --------GLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
LA + P I+ + V + +L AC G+
Sbjct: 462 CRARKVDDALAFIENMP-IKANSVLWATLLGACRSGGH 498
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 61/172 (35%), Gaps = 46/172 (26%)
Query: 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77
+ G ++ AR+ F QM D + MI GY R EA++L+ M + D +T
Sbjct: 57 HSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPF 116
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKD 104
+L A Y CG A V + +D
Sbjct: 117 VLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRD 176
Query: 105 KFTWTAMI---VGLAISD----------PFPTIRPDEVTYVGVLSACTHNGN 143
TW MI + +S+ +RPDEVT V ++ AC GN
Sbjct: 177 VVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGN 228
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 42/191 (21%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++ T +VSGY+ G+++ AR F QM E+D + W+ MI GY ++ +EAL LF
Sbjct: 286 MSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESDQPQEALHLF 345
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ I PDE T++ +++A MY KC
Sbjct: 346 NEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNGFGKALSVNNALIDMYAKC 405
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIRPDEVTYVGVLSAC-- 138
G +E A+ V KM ++ +WT+MI AI + F ++ + V V C
Sbjct: 406 GCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFHQMKEENVEPNAVTFPCRS 465
Query: 139 THNGNETFVIN 149
G E F IN
Sbjct: 466 IRKGPENFRIN 476
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 83/215 (38%), Gaps = 76/215 (35%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD T ++ Y+ G++ AR F +M RD V W+ MI+GY + F +AL LF EM
Sbjct: 157 KDPFLQTGLMGMYVGCGKILEARLVFDKMSYRDVVTWSTMINGYYQGGHFDDALQLFEEM 216
Query: 64 QTSNIRPDEFTIVRILTA-----------------------------------YMYCKCG 88
++SN+ PD+ + I++A Y C C
Sbjct: 217 RSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENNFALDPHLESGLISLYAGCGCM 276
Query: 89 D-----------------------------VEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
D +E A+ + +M KD W+ MI G A SD
Sbjct: 277 DMAKELFTNMSSRNLVVSTTMVSGYLKVGRIEDARLIFNQMDEKDLICWSIMISGYAESD 336
Query: 120 ------------PFPTIRPDEVTYVGVLSACTHNG 142
F I PDEVT + V+SAC H G
Sbjct: 337 QPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLG 371
>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 664
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 55/191 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW I+ G++ +G + A +F MPE+D W +I G+ + AL L
Sbjct: 317 MPERDLVSWNTILQGHVQQGDMATANTWFRGMPEKDETSWNTLISGH----KDEGALALL 372
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM +RPDE T+ +++ MY KC
Sbjct: 373 SEMIRGGLRPDEATLSVVISICASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKC 432
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV-----GLA----------ISDPFPTIRPDEVTYV 132
G + +A +V + ++++D TW AMI G+A D F RPD T++
Sbjct: 433 GLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKMTKDGF---RPDHATFL 489
Query: 133 GVLSACTHNGN 143
VLSAC H G+
Sbjct: 490 SVLSACAHKGD 500
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 22/155 (14%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++V+SW ++SGY+ G V+ AR+ F MP R+ V W MI GY++ R REA LF
Sbjct: 131 MPDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMISGYIKKRRLREARELF 190
Query: 61 PEMQTSNIRPDEFTIV--RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-- 116
++ P T V +L+ Y+ C ++ A+ + +M R+D +W MI G A
Sbjct: 191 ------DLSPSHPTSVCNALLSGYVALSC--LKDAEELFGRMQRRDPVSWNVMITGYARA 242
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ D P + D +++ V+ NG+
Sbjct: 243 GRMQVAQSLFDEMP--QKDTISWTAVMRGYLQNGD 275
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ISWT ++ GY+ G VD + + F +P+RD V W M+ G+++ R +AL LF
Sbjct: 255 MPQKDTISWTAVMRGYLQNGDVDASWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLF 314
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
EM ++ + IL ++ + GD+ A R M KD+ +W +I G
Sbjct: 315 AEMPERDL----VSWNTILQGHV--QQGDMATANTWFRGMPEKDETSWNTLISGHKDEGA 368
Query: 115 LAISDPF--PTIRPDEVTYVGVLSACT 139
LA+ +RPDE T V+S C
Sbjct: 369 LALLSEMIRGGLRPDEATLSVVISICA 395
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W ++SG + + AR+ F MP R+ V W A++ GY R R EA LF
Sbjct: 69 MPERNVFTWNCMISGLVGNRMLADARRVFDAMPVRNPVSWAALLTGYARCGRVAEARELF 128
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M PD + Y + G VE+A+ + M ++ +W MI G
Sbjct: 129 DRM------PDRNVVSWNAMMSGYLRNGMVERARELFDMMPSRNDVSWLTMISG 176
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D + + ++S Y G + A Q F + +RD V W AMI Y EAL LF +M
Sbjct: 417 HDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEALKLFNKM 476
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
RPD T + +L+A + GD+ + R R M
Sbjct: 477 TKDGFRPDHATFLSVLSACAH--KGDLYEGCRYFRSM 511
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ W +++ ++ G+V AR+ F +MPER+ W MI G + +A +F M
Sbjct: 42 DIFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMP 101
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N + +LT Y +CG V +A+ + +M ++ +W AM+ G
Sbjct: 102 VRN----PVSWAALLTG--YARCGRVAEARELFDRMPDRNVVSWNAMMSG 145
>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Glycine max]
Length = 581
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 19/152 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK++DV+SWT +V+G G+V+ AR F QMP R+ V W AMI GY + R EAL LF
Sbjct: 152 MKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNVVSWNAMITGYAQNRRLDEALQLF 211
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL---AI 117
M ++ P T++ T ++ + G++ +A+++ +M K+ TWTAM+ G +
Sbjct: 212 QRMPERDM-PSWNTMI---TGFI--QNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGL 265
Query: 118 SDPF----------PTIRPDEVTYVGVLSACT 139
S+ ++P+ T+V VL AC+
Sbjct: 266 SEEALRVFIKMLATNELKPNTGTFVTVLGACS 297
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V++WT +V+GYI QV A + F +MP R+ V W M+DGY R ++AL LF M
Sbjct: 62 KNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRM 121
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
N+ + I+TA + +CG +E AQR+ +M +D +WT M+ GLA
Sbjct: 122 PERNV----VSWNTIITALV--QCGRIEDAQRLFDQMKDRDVVSWTTMVAGLA 168
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW +++G+I G+++ A + F +M E++ + WTAM+ GY++ EAL +F
Sbjct: 214 MPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVF 273
Query: 61 PEMQTSN-IRPDEFTIVRILTA---------------------------------YMYCK 86
+M +N ++P+ T V +L A MY K
Sbjct: 274 IKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTVFQDSTCVVSALINMYSK 333
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYV 132
CG++ A+++ L ++D +W MI A + F ++ ++VT+V
Sbjct: 334 CGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVCANDVTFV 393
Query: 133 GVLSACTHNG 142
G+L+AC+H G
Sbjct: 394 GLLTACSHTG 403
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+S G++D AR+ F +MPERD LWT MI GYL+ REA LF R D
Sbjct: 8 ISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFD-------RWDA 60
Query: 73 FTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V TA + Y K V++A+R+ +M ++ +W M+ G A
Sbjct: 61 KKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYA 106
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V GY G A F +MPER+ V W +I ++ R +A LF
Sbjct: 90 MPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITALVQCGRIEDAQRLF 149
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M+ ++ T+V L K G VE A+ + +M ++ +W AMI G A
Sbjct: 150 DQMKDRDV-VSWTTMVAGLA-----KNGRVEDARALFDQMPVRNVVSWNAMITGYA 199
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 10 TDIVSGYINR----GQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
T +VS IN G++ AR+ F + +RD + W MI Y +EA+ LF EM
Sbjct: 321 TCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAINLFNEM 380
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
Q + ++ T V +LTA + G VE+ + ++L+
Sbjct: 381 QELGVCANDVTFVGLLTACSH--TGLVEEGFKYFDEILK 417
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y + G+ A + F +M +RD V WT+MIDG++ +R EA+ LF EM + P+
Sbjct: 137 LIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPN 196
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T+V +L A MY KCG + A++V
Sbjct: 197 EATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFD 256
Query: 99 KMLRKDKFTWTAMIVGLA----------ISDPFPT--IRPDEVTYVGVLSACTHNG 142
++ KD F WTAMI GLA + D + +RPDE T VLSAC + G
Sbjct: 257 GIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAG 312
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G + AR+ F + +D WTAMI G EA+TLF +M++ +R
Sbjct: 236 TALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLR 295
Query: 70 PDEFTIVRILTA 81
PDE T+ +L+A
Sbjct: 296 PDERTMTAVLSA 307
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 61/170 (35%), Gaps = 47/170 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM--QTSNIRPDEFTIVR 77
G + A + ++ MI Y + +AL LF M Q ++ RPD+FT
Sbjct: 42 GDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPF 101
Query: 78 ILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKD 104
+L + +MY CG +A +V KM +D
Sbjct: 102 LLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRD 161
Query: 105 KFTWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLSACTHNG 142
+WT+MI G D IR P+E T V VL AC G
Sbjct: 162 VVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAG 211
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V SW +++GY G +D AR F MP++D V W AM+ Y ++ E L LF
Sbjct: 381 MPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLF 440
Query: 61 PEMQTSN--IRPDEFTIV------------------RILTA-------------YMYCKC 87
EM + F V R++ A MY KC
Sbjct: 441 KEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKC 500
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G +E+A +M +D +W MI G A + F T+R PD++T VGVL
Sbjct: 501 GSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVL 560
Query: 136 SACTHNG 142
+AC+H+G
Sbjct: 561 AACSHSG 567
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D ISW +++GY+ R Q++ A++ F +MP+RD V W M+ GY R EA LF
Sbjct: 261 DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF---D 317
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ IR D FT I++ Y + G +E+A+RV M K+ +W AM+
Sbjct: 318 VAPIR-DVFTWTAIVSG--YAQNGMLEEAKRVFDAMPDKNAVSWNAMMAA 364
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD +S+ ++S + N G V +AR YF PE+D V W M+ Y+R R +EA LF
Sbjct: 195 MPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELF 254
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
S D + ++ Y+ + +E+AQ++ KM ++D +W M+ G A
Sbjct: 255 ----DSRTEWDAISWNALMAGYV--QRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGD 308
Query: 121 FPTIR--------PDEVTYVGVLSACTHNG 142
R D T+ ++S NG
Sbjct: 309 MAEARRLFDVAPIRDVFTWTAIVSGYAQNG 338
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW +VSGY RG + AR+ F P RD WTA++ GY + EA +F
Sbjct: 288 MPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVF 347
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M PD+ + Y + +E+A+ + M ++ +W M+ G A +
Sbjct: 348 DAM------PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGM 401
Query: 121 FPTIRP--------DEVTYVGVLSACTHNG 142
R D V++ +L+A + G
Sbjct: 402 LDEARAIFGMMPQKDAVSWAAMLAAYSQIG 431
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G ++ A F +M ERD V W MI GY R +EAL +F M+ ++ +PD
Sbjct: 493 LLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD 552
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+ T+V +L A + G VEK M R
Sbjct: 553 DITLVGVLAACSH--SGLVEKGISYFYSMHR 581
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI ++ ++ G+V A + FA MP R + M+ GY R +AL+ F
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF---- 161
Query: 65 TSNIRPDEFTIVRILTAY-MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------I 117
S RPD F+ +L A + DV + + +M KD ++ MI A +
Sbjct: 162 RSIPRPDSFSYNTLLHALGVSSSLADV---RALFDEMPVKDSVSYNVMISSHANHGLVSL 218
Query: 118 SDPFPTIRP--DEVTYVGVLSACTHNG 142
+ + + P D V++ G+L+A NG
Sbjct: 219 ARHYFDLAPEKDAVSWNGMLAAYVRNG 245
>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
Length = 655
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 49/187 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D ISW I+ GY+ +G +D A +F + P +D + W +I GY + AL+L
Sbjct: 308 MPDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGY----KDEGALSLL 363
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM ++PD+ T+ +++ MY KC
Sbjct: 364 SEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKC 423
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVL 135
G + +A +V +L++D TW AMI A ++D + RPD T++ +L
Sbjct: 424 GLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSIL 483
Query: 136 SACTHNG 142
SAC H G
Sbjct: 484 SACAHKG 490
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+S T I+ GY+ G VD A + F MP RD V W M+DG++R +R +AL LF
Sbjct: 246 MPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLF 305
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL----A 116
EM PD I Y + GD++ A + KD +W +I G A
Sbjct: 306 SEM------PDRDQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEGA 359
Query: 117 ISDPFPTIR----PDEVTYVGVLSACT 139
+S IR PD+ T V+S C
Sbjct: 360 LSLLSEMIRGGLKPDQATLSVVISICA 386
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+++V+SW +VSGY G V AR+ F MP RD V W MI GY++ REA LF
Sbjct: 124 DRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDS 183
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M + P +L+ Y+ + G + A+ + +M ++ +W MI G A
Sbjct: 184 MPS----PPTSVCNALLSGYV--ELGYMRAAEVLFGQMQTRNPVSWNVMITGYA 231
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +VSG I + AR+ F MP R+ V W A++ GY R R EA LF
Sbjct: 60 MSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELF 119
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
N PD + Y + G V++A+ + M +D +W MI G
Sbjct: 120 ------NRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISG 167
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++SGY+ G + A F QM R+ V W MI GY R A LF EM P+
Sbjct: 195 LLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEM------PE 248
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
+ + R Y + G V+ A +V + M +D W M+ G +D
Sbjct: 249 KDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRND 296
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D + + ++S Y G + A Q F + +RD V W AMI Y EAL +F M
Sbjct: 408 HDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMM 467
Query: 64 QTSNIRPDEFTIVRILTA-----YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+ RPD T + IL+A Y+Y C Q + R D ++ ++G
Sbjct: 468 TKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLG 523
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88
F +M ER+ W M+ G +R EA +F M N + +LT Y +CG
Sbjct: 57 FDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRN----SVSWAALLTG--YARCG 110
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
V +A+ + ++ ++ +W AM+ G A
Sbjct: 111 RVAEARELFNRIPDRNVVSWNAMVSGYA 138
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 82/179 (45%), Gaps = 47/179 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +VS Y G +D A + +PE + V WTA+I GY+ V ++REA+ LF M + +R
Sbjct: 153 TSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLR 212
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD FTIV++L+A +Y K G++EKA+ +
Sbjct: 213 PDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAKHGNMEKARCL 272
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
M +D +W+AMI G A S+ P ++PD VG L AC G
Sbjct: 273 FDGMAERDIVSWSAMIQGYA-SNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCACARLG 330
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V T +V Y G ++ AR F M ERD V W+AMI GY ++AL LF +M
Sbjct: 248 RNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFFKM 307
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ ++PD + +V L A MY KCG +
Sbjct: 308 LNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAKCGSM 367
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
KA V + + KD+ W A I GLA++ I+PD T+VG+L C
Sbjct: 368 AKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFGQMERFGIQPDGNTFVGLLCGC 427
Query: 139 THNG 142
TH G
Sbjct: 428 THAG 431
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 67/180 (37%), Gaps = 45/180 (25%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W+ I+ + R F Q+ E D VL+ MI G + + F E++ + M+
Sbjct: 51 WSMIIRSSFDFNDTTYTRLIFNQIKEPDVVLYNTMIRGLVSSDCFTESIEFYYSMRKKGF 110
Query: 69 RPDEFTIVRILTA---------------------------------YMYCKCGDVEKAQR 95
P+ FT ++ A +Y KCG ++ A +
Sbjct: 111 LPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLGFDCNLFVNTSLVSLYAKCGSIDDALK 170
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNGN 143
+L + + +WTA+I G + +RPD T V VLSAC G+
Sbjct: 171 MLDLIPESNIVSWTAIISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGD 230
>gi|302795676|ref|XP_002979601.1| hypothetical protein SELMODRAFT_110868 [Selaginella moellendorffii]
gi|300152849|gb|EFJ19490.1| hypothetical protein SELMODRAFT_110868 [Selaginella moellendorffii]
Length = 310
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQ-YFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M +DV+SW +VSG IN G++D+AR+ +F QMP+++ V W MI Y +R EAL L
Sbjct: 21 MPRRDVVSWNSMVSGLINLGEIDVARERFFDQMPQKNVVSWNMMISAYSGDDRNDEALAL 80
Query: 60 FPEMQTSNIRPDEFTIV---------------------------------RILTAY--MY 84
F M S PD T +I TA MY
Sbjct: 81 FRAMDVS---PDRVTFAVALEICANLSDVEQGKEIHRRITEGGRGFESHPQIETALLNMY 137
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYV 132
+CGD+ + ++ R+D W AMI G A + I P+ + V
Sbjct: 138 AQCGDISLTSSIFEELSRRDLAAWNAMIHGYARIGELGSMLELFFRMLLEGIGPNFASLV 197
Query: 133 GVLSACTHNG 142
++SAC+H G
Sbjct: 198 SIVSACSHGG 207
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 48/188 (25%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ + +T ++ GYI G ++ A+ F + +RD V WTAMI GY + + EA+ LF
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFR 402
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M RP+ +T+ +L+ MY K G
Sbjct: 403 SMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462
Query: 89 DVEKAQRVLRKMLR--KDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
+ A R ++R +D +WT+MI+ LA + F T +RPD +TYVGV
Sbjct: 463 SITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521
Query: 135 LSACTHNG 142
SACTH G
Sbjct: 522 FSACTHAG 529
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 33/146 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + SW ++S Y RG +D + ++F ++P+RD V WT MI GY + ++ +A+ +
Sbjct: 75 MPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIM 134
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM I P +FT+ +L + MY KC
Sbjct: 135 GEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV 113
GD A+ V +M+ KD +W AMI
Sbjct: 195 GDPMMAKVVFDRMVVKDISSWNAMIA 220
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 34/135 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ SW +++ ++ GQ+D+A F QM ERD V W +MI GY + AL +F +M
Sbjct: 210 KDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKM 269
Query: 64 -QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ S + PD FT+ +L+A MY +CG
Sbjct: 270 LRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGG 329
Query: 90 VEKAQRVLRKMLRKD 104
VE A+R++ + KD
Sbjct: 330 VETARRLIEQRGTKD 344
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 12 IVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G + A + F + ERD V WT+MI + EAL LF M +RP
Sbjct: 454 LITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT----AMIVGL----------- 115
D T V + +A + G V + ++ M DK T A +V L
Sbjct: 514 DHITYVGVFSACTH--AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571
Query: 116 AISDPFPTIRPDEVTYVGVLSAC 138
+ P I PD VT+ +LSAC
Sbjct: 572 EFIEKMP-IEPDVVTWGSLLSAC 593
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 44/154 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PER------------------ 35
M +D+++W ++SGY RG A F++M P+R
Sbjct: 238 MAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCI 297
Query: 36 ---------------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
++ A+I Y R A L + T +++ + FT +L
Sbjct: 298 GEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTA--LLD 355
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y+ K GD+ +A+ + + +D WTAMIVG
Sbjct: 356 GYI--KLGDMNEAKNIFDSLKDRDVVAWTAMIVG 387
>gi|357143516|ref|XP_003572948.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Brachypodium distachyon]
Length = 791
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 52/191 (27%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K +DV W+ ++SGY G+V AR F MPE+D V WT +I G+++ R+++AL LF
Sbjct: 267 KARDVKLWSAMLSGYARSGEVRTARDLFDGMPEKDLVAWTVLIGGFVQAGRYKDALVLFE 326
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK-------------------MLR 102
EM+ + DE T+V +L+A ++ G ++ A+R+ + M
Sbjct: 327 EMEEAGFEADEVTVVTLLSACVH--YGKIDVAKRLHHRARHHGLISRNARLATSFVDMYA 384
Query: 103 KDKFTWTAMIVGLAISDPFPTI-------------------------------RPDEVTY 131
K TAM V ++ D F T+ PD++T+
Sbjct: 385 KHGCIQTAMDVFCSVGDEFKTVHLFNAMINGLAHRSLGEKAIALFDSMGSLGLHPDKITF 444
Query: 132 VGVLSACTHNG 142
VL AC+ +G
Sbjct: 445 TAVLCACSRSG 455
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++S Y +VDIA F + + V W AMI GY + EAL LF EMQ
Sbjct: 378 DVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQ 437
Query: 65 TSNIRPDEFTIVRILTAYM---------------------------------YCKCGDVE 91
+ +I+PD FT+V ++TA + KCG ++
Sbjct: 438 SHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQ 497
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSACT 139
A+++ M + TW AMI G + D F +++P+E+T++ V++AC+
Sbjct: 498 TARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557
Query: 140 HNG 142
H+G
Sbjct: 558 HSG 560
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 45/184 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ + T +V+ Y Q++ A + F +MP+RD V W ++ GY + R A+ + +MQ
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235
Query: 65 TSNIRPDEFTIVRILTA-----------------------YM----------YCKCGDVE 91
+ +PD T+V +L A YM Y KCG V
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS----DPFPT--------IRPDEVTYVGVLSACT 139
A+ V + M ++ +W MI G A + + F T + P V+ +G L AC
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355
Query: 140 HNGN 143
+ G+
Sbjct: 356 NLGD 359
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ +K+V T ++ + G + AR+ F M ER + W AMIDGY REAL LF
Sbjct: 475 LMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLF 534
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
EMQ +++P+E T + ++ A
Sbjct: 535 NEMQNGSVKPNEITFLSVIAA 555
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 63/173 (36%), Gaps = 45/173 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V AR F M R+ V W MIDGY + EA F +M +
Sbjct: 282 TAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVE 341
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P +++ L A MY KC V+ A V
Sbjct: 342 PTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASV 401
Query: 97 LRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSA 137
+ K TW AMI+G A +++ I+PD T V V++A
Sbjct: 402 FGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/187 (28%), Positives = 85/187 (45%), Gaps = 47/187 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + ++S Y G+VD A FA MP+R+ + WTAM+ GY + R EA+ F E
Sbjct: 148 HSDAAARNALLSAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLE 207
Query: 63 M-QTSNIRPDEFTIVRILTA---------------------------------YMYCKCG 88
M + +RP+E T+ +L A MY KCG
Sbjct: 208 MWEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCG 267
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVL 135
+ +A V R + ++D +W +MI+ A+ + + +PD +T+VGV+
Sbjct: 268 SIRRAWMVFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVI 327
Query: 136 SACTHNG 142
ACTH G
Sbjct: 328 LACTHGG 334
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 18/120 (15%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
D L +A++ Y R E+ +F E+ P R Y +CG V+ A+
Sbjct: 118 DPYLASALVASYARSGHLAESRRVFDELP-----PHSDAAARNALLSAYARCGRVDDAES 172
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
+ M ++ +WTAM+ G A + +RP+EVT VL AC G
Sbjct: 173 LFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVG 232
Score = 38.5 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93
+RD W +MI + +RE L LF +++ + +PD T V ++ A C G +
Sbjct: 282 QRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILA---CTHGGLVDE 338
Query: 94 QRVLRKMLR-----KDKFTWTAMIVGL-----------AISDPFPTIRPDEVTYVGVLSA 137
++L +R K + +V L ++ P + PD V + +L A
Sbjct: 339 GKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMP-MEPDAVIWGALLGA 397
Query: 138 CTHNGN 143
C+ +GN
Sbjct: 398 CSFHGN 403
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y G +D A F +M E+D + WT+++ GY + N E+L +F +M+ + + PD
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPD 464
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+F + IL+A MY KCG ++ A +
Sbjct: 465 QFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFV 524
Query: 99 KMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACTHNG 142
M KD TWTA+IVG A + RPD +T++G+L AC+H G
Sbjct: 525 SMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAG 580
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 43/173 (24%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G + A+ M + D V W +++ G++R EAL LF M N++
Sbjct: 304 SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMK 363
Query: 70 PDEFTIVRIL-------------------TAY------------MYCKCGDVEKAQRVLR 98
D++T +L T + MY K GD++ A V
Sbjct: 364 IDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFE 423
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACT 139
KML KD +WT+++ G A ++ + PD+ +LSAC
Sbjct: 424 KMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACA 476
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+ +V+ Y G +D A F M +D + WTA+I GY + + R +L + M +S
Sbjct: 503 YNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGT 562
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAISDPFPT 123
RPD T + +L A + G V++ ++ ++M ++ + MI S
Sbjct: 563 RPDFITFIGLLFACSH--AGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDE 620
Query: 124 ---------IRPDEVTYVGVLSAC 138
++PD + +LSAC
Sbjct: 621 AKQLLDQMDVKPDATVWKSLLSAC 644
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 33/118 (27%)
Query: 31 QMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-------- 82
+ +++VLWTAM+ GY + +A+ F M + +++T ILTA
Sbjct: 224 EFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCF 283
Query: 83 -------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY KCGD++ A+ +L M D +W +++VG
Sbjct: 284 GEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGF 341
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 47/186 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD SW ++S Y+N G++ AR+ F + + W+++I GY + EA LF
Sbjct: 91 MPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLF 150
Query: 61 PEMQTSNIRPDEFT---IVRILTAY------------------------------MYCKC 87
M+ + +FT ++R+ ++ MY KC
Sbjct: 151 RSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKC 210
Query: 88 GDVEKAQRVLRKML--RKDKFTWTAMIVGLAIS-DPFPT-----------IRPDEVTYVG 133
V +A+ + + + RK+ WTAM+ G A + D + + ++ T+
Sbjct: 211 KCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPT 270
Query: 134 VLSACT 139
+L+AC+
Sbjct: 271 ILTACS 276
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
GQV+ AR+ F +MP++D W MI Y+ V R EA LF
Sbjct: 79 GQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELF 119
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 80/184 (43%), Gaps = 47/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T ++ Y G ++ AR+ F M RD V WT MI+GY +A LF MQ
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
I+PD T + I+ A +MY KCG ++
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIK 412
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSAC 138
A++V M R+D +W+AMI G + + + T I PD VTY+ +L+AC
Sbjct: 413 DARQVFDAMPRRDVVSWSAMI-GAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNAC 471
Query: 139 THNG 142
H G
Sbjct: 472 GHLG 475
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 77/183 (42%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ T +V Y G + ARQ F MP RD V W+AMI Y+ EA F M+
Sbjct: 394 DLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMK 453
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
SNI PD T + +L A M K G VE
Sbjct: 454 RSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVE 513
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACT 139
+A+ + M+R+D TW AMI G ++ RP+ VT+VGVLSAC+
Sbjct: 514 RARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACS 573
Query: 140 HNG 142
G
Sbjct: 574 RAG 576
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 45/179 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +VS Y+ G +D ARQ F + RD + M+ GY + + +A LF MQ ++
Sbjct: 197 TALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLK 256
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P++ + + IL MY CG +E A+RV
Sbjct: 257 PNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRV 316
Query: 97 LRKMLRKDKFTWTAMIVGLA----ISDPF--------PTIRPDEVTYVGVLSACTHNGN 143
M +D +WT MI G A I D F I+PD +TY+ +++AC + N
Sbjct: 317 FDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISAN 375
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 18/140 (12%)
Query: 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78
G V+ AR F M RD + W AMI GY REAL LF M RP+ T V +
Sbjct: 509 HGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGV 568
Query: 79 LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS---------------DPFPT 123
L+A + G V++ +R +L T + G + P
Sbjct: 569 LSA--CSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMP- 625
Query: 124 IRPDEVTYVGVLSACTHNGN 143
++P + +L AC +GN
Sbjct: 626 VKPTSSIWSSLLVACRIHGN 645
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 64/164 (39%), Gaps = 45/164 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V ARQ F + + V W A+I GY +V +EA LF +M + P T + +L
Sbjct: 106 GNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVL 165
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A MY K G ++ A++V + +D
Sbjct: 166 DACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVS 225
Query: 107 TWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSAC 138
T+ M+ G A S + ++P++++++ +L C
Sbjct: 226 TFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGC 269
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTIR--------PDEVT 130
+Y CG+V +A+++ + K TW A+I G A + + F R P +T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160
Query: 131 YVGVLSACT 139
++ VL AC+
Sbjct: 161 FLSVLDACS 169
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 46/184 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD +SW ++SG +D AR F +MP+RD V WTA+I Y++ AL LF +M
Sbjct: 619 KDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDM 678
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
I+P++ T+ +L+A MY KCG
Sbjct: 679 LARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-Y 737
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSAC 138
E V +M D TW A++VG A + I PD+++++GVL AC
Sbjct: 738 EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCAC 797
Query: 139 THNG 142
+H G
Sbjct: 798 SHAG 801
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 77/149 (51%), Gaps = 18/149 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
K++ +WT +++GY G+++ AR+ F M ER+ V W AMI GY++ + A LF E
Sbjct: 230 GKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDE 289
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG-LAISDPF 121
M N+ + ++T YC C + +A+ + +M ++ +W MI G + ISD +
Sbjct: 290 MPEKNVA----SWNSVVTG--YCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYW 343
Query: 122 PT-----------IRPDEVTYVGVLSACT 139
RPD+ +V VLSA T
Sbjct: 344 EAWDVFVKMCRTVARPDQSIFVVVLSAIT 372
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 45/184 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N +V++W I++GY G + A+ F +MP ++ W AMI G+++ REAL L E
Sbjct: 486 NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIE 545
Query: 63 MQTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ S P + + L+A MY KCG+
Sbjct: 546 LHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGN 605
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACT 139
VE V R + KD +W ++I GL+ + + P + D V++ ++SA
Sbjct: 606 VEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMP--KRDVVSWTAIISAYV 663
Query: 140 HNGN 143
G+
Sbjct: 664 QAGH 667
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 33/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V SW +V+GY + ++ AR+ F QMPER+ V W MI GY+ ++ + EA +F
Sbjct: 290 MPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVF 349
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + RPD+ V +L+A Y +
Sbjct: 350 VKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRN 409
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G ++ A M +++++WT MI A
Sbjct: 410 GSLDLAMHFFETMPERNEYSWTTMIAAFA 438
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV+ + I++ Y G +D+A +F MPER+ WT MI + + R +A+ L+ +
Sbjct: 395 DVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERV- 453
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P++ + Y + G ++KA+ + ++L + W A+I G
Sbjct: 454 -----PEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAG 498
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V+ AR+ F +M +RD V W +MI+GY + + EA LF NIR T +L
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILL 240
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
T Y K G +E+A+ V M ++ +W AMI G
Sbjct: 241 TG--YAKEGRIEEAREVFESMTERNVVSWNAMISG 273
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SWT +++ + G++D A Q + ++PE+ TAM+ Y +V R ++A +F
Sbjct: 422 MPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIF 481
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
E+ N+ I Y + G +++A+ + +KM K+ +W AMI G
Sbjct: 482 DEILNPNVVAWNAIIAG------YTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEE 535
Query: 115 ------LAISDPFPTIRPDEVTYVGVLSACTHNGN 143
L I P + ++ LSAC + G+
Sbjct: 536 SREALELLIELHRSGSVPSDSSFTSALSACANIGD 570
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88
F +MPE D + W A++ G + +EA+ +F +M+ I PD+ + + +L A + G
Sbjct: 744 FEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSH--AG 801
Query: 89 DVEKAQRVLRKMLRKDK-----FTWTAMIVGL----------AISDPFPTIRPDEVTYVG 133
V++ M +K + +T M+ L A+ + P ++PD V +
Sbjct: 802 LVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMP-VKPDSVIWEA 860
Query: 134 VLSAC 138
+L AC
Sbjct: 861 LLGAC 865
>gi|302791818|ref|XP_002977675.1| hypothetical protein SELMODRAFT_107843 [Selaginella moellendorffii]
gi|300154378|gb|EFJ21013.1| hypothetical protein SELMODRAFT_107843 [Selaginella moellendorffii]
Length = 388
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 51/190 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQ-YFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M +DV+SW +VSG IN G++D+AR+ +F QMP+++ V W MI Y +R EAL L
Sbjct: 99 MPRRDVVSWNSMVSGLINLGEIDVARERFFDQMPQKNVVSWNMMISAYSGDDRNDEALAL 158
Query: 60 FPEMQTSNIRPDEFTIV---------------------------------RILTAY--MY 84
F M S PD T +I TA MY
Sbjct: 159 FRAMDVS---PDRVTFAVALEICANLSDVEQGKEIHRRITEGGRGFESHPQIETALLNMY 215
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYV 132
+CGD+ + ++ R+D W AMI G A + I P+ + V
Sbjct: 216 AQCGDISLTSSIFEELSRRDLTAWNAMIHGYARIGELGSMLEVFFRMLLEGIGPNFASLV 275
Query: 133 GVLSACTHNG 142
++SAC+H G
Sbjct: 276 SIVSACSHGG 285
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW +SG++ G+ A+ F + P D V W A++ A LF
Sbjct: 1 MPERDLVSWNATISGFVQIGRFLDAKALFERFPATDIVSWNAILTAEAEARDTAAAKELF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK-----MLRKDKFTWTAMIVGL 115
++ ++I IL A + + GD++ ++ + + M R+D +W +M+ GL
Sbjct: 61 DDLPKADI-----VSWHILIA-AFAQNGDLDSSRTLFSRIFFDLMPRRDVVSWNSMVSGL 114
>gi|255576546|ref|XP_002529164.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531388|gb|EEF33223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 453
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW +++G+I ++ +AR+ +MPE++ V WT MI GY++ AL +F
Sbjct: 212 MPERDLPSWNTMITGFIQNKELKLARKLLDEMPEKNVVSWTTMITGYVQEGESEAALNIF 271
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
EM + + P+E T V +L A MY K
Sbjct: 272 MEMIRDGGVMPNEGTFVNVLGACSDLAGLGEGQQVHQMISKTVYQDMPFVVSALINMYSK 331
Query: 87 CGDVEKAQRVL--RKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYV 132
CG+++ A+++ R ++D +W M+ A + F +R PD+++YV
Sbjct: 332 CGELDMARKMFDNRTTSQRDLVSWNCMVAAYAHHGCGKEAINLFNEMRALGFEPDDISYV 391
Query: 133 GVLSACTHNG 142
G+LSAC+H G
Sbjct: 392 GLLSACSHAG 401
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 19/152 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT +V+G G++D AR+ F +MPER+ V W AMI GY + R EA LF
Sbjct: 150 MPKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVSWNAMITGYAKNMRLVEAFELF 209
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
M ++ P T++ T ++ K +++ A+++L +M K+ +WT MI G
Sbjct: 210 ERMPERDL-PSWNTMI---TGFIQNK--ELKLARKLLDEMPEKNVVSWTTMITGYVQEGE 263
Query: 115 --LAISDPFPTIR-----PDEVTYVGVLSACT 139
A++ IR P+E T+V VL AC+
Sbjct: 264 SEAALNIFMEMIRDGGVMPNEGTFVNVLGACS 295
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVN------RF 53
M +DVI+WT +++GYI + AR+ F + ++ V WTAM+ GY+R+N R
Sbjct: 81 MLERDVITWTTVITGYIKCRLIVEARRLFDRADAMKNVVTWTAMVSGYMRLNQVLEAERV 140
Query: 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
EA LF EM P I + G +++A+++ KM ++ +W AMI
Sbjct: 141 DEARRLFDEM------PKRDVISWTAMVAGLARNGRIDEARKIFDKMPERNVVSWNAMIT 194
Query: 114 GLA 116
G A
Sbjct: 195 GYA 197
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 7/101 (6%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+++ ARQ F +M ERD + WT +I GY++ EA LF ++ + T ++
Sbjct: 69 GKINEARQVFDRMLERDVITWTTVITGYIKCRLIVEARRLFDR---ADAMKNVVTWTAMV 125
Query: 80 TAYM----YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ YM + V++A+R+ +M ++D +WTAM+ GLA
Sbjct: 126 SGYMRLNQVLEAERVDEARRLFDEMPKRDVISWTAMVAGLA 166
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 12 IVSGYINR----GQVDIARQYFAQ--MPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
+VS IN G++D+AR+ F +RD V W M+ Y +EA+ LF EM+
Sbjct: 321 VVSALINMYSKCGELDMARKMFDNRTTSQRDLVSWNCMVAAYAHHGCGKEAINLFNEMRA 380
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105
PD+ + V +L+A C + K + L KDK
Sbjct: 381 LGFEPDDISYVGLLSA---CSHAGLVKEGLSYFQELVKDK 417
>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 577
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DV++WT +V Y ++D A + F+ MP ++ WTA+I+ ++ EAL LF
Sbjct: 206 MKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLF 265
Query: 61 PEMQTSNIRPDEFTIVRILTAY------------------------------------MY 84
+M P+ FT V +L+A +Y
Sbjct: 266 QQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLY 325
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------PFPT-----IRPDEVTYV 132
K GDV+ A+ + +L KD +W ++I G A + F IRP++VT++
Sbjct: 326 SKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFL 385
Query: 133 GVLSACTHNG 142
VLSAC+H G
Sbjct: 386 AVLSACSHTG 395
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 35/146 (23%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+++ SW I++ Y G AR+ F +MP + V + +I + + E++ +F +M
Sbjct: 75 RNIHSWNTILASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQM 134
Query: 64 QTSN--IRPDEFTIVRI------LTAY---------------------------MYCKCG 88
Q + DE T+V I L A Y KCG
Sbjct: 135 QQDFDLLALDEITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCG 194
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVG 114
D + + + +M +D TWT+M+V
Sbjct: 195 DPDASYSIFSRMKERDVVTWTSMVVA 220
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW +++G+ +V+ AR F QMP R+ V WT +IDGY + EALTL
Sbjct: 260 MPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTGLIDGYTHACLYAEALTLL 319
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M I P E ++ ++ A +Y K
Sbjct: 320 RHMMAGGISPSEIIVLAVIPAISNLGGIVMGEMLNGYCEKKGIMSDVRVGNSLIDLYAKI 379
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGV 134
G V+ + +V +ML R++ +WT++I G A+ + F +R P+ +T++ V
Sbjct: 380 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSV 439
Query: 135 LSACTHNG 142
++ C+H G
Sbjct: 440 INVCSHGG 447
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++ SW ++SGY G + AR F MP+RD V W A+I GY + + EA+ + EM+
Sbjct: 311 NIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMK 370
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
+ T L+A MYCKCG ++
Sbjct: 371 RDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCID 430
Query: 92 KAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSACT 139
+A V + + KD +W M+ G L + + T ++PDE+T VGVLSAC+
Sbjct: 431 EAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACS 490
Query: 140 HNG 142
H G
Sbjct: 491 HTG 493
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 25/137 (18%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW ++SGY+ G VD AR F +MP ++ + W ++ Y+R R EA LF
Sbjct: 121 MPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLF 180
Query: 61 PEMQ---------------TSNIRPDEFTI-----VRILTAY-----MYCKCGDVEKAQR 95
N+ D + VR L ++ Y + GD+ +A+R
Sbjct: 181 ESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARR 240
Query: 96 VLRKMLRKDKFTWTAMI 112
+ + +D FTWTAM+
Sbjct: 241 LFEESPVRDVFTWTAMV 257
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +S+ ++SGY+ + +AR F +MP +D W M+ GY R R R+A LF
Sbjct: 59 MPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLF 118
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M P++ + Y + G V++A+ V +M K+ +W ++ S
Sbjct: 119 DSM------PEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGR 172
Query: 121 FPTIR 125
R
Sbjct: 173 LEEAR 177
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
++IS ++ GY+ R + ARQ F Q+P RD + W MI GY + +A LF E
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEE-- 244
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
S +R D FT ++ Y Y + G +++A+RV +M +K + ++ MI G A
Sbjct: 245 -SPVR-DVFTWTAMV--YAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYA 292
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 25/138 (18%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ISW ++SGY G + AR+ F + P RD WTAM+ Y++ EA +F EM
Sbjct: 217 RDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276
Query: 64 -----QTSNI------RPDEFTIVRILTAYM--------------YCKCGDVEKAQRVLR 98
+ N+ + + R L M YC+ GD+ +A+ +
Sbjct: 277 PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFD 336
Query: 99 KMLRKDKFTWTAMIVGLA 116
M ++D +W A+I G A
Sbjct: 337 MMPQRDSVSWAAIIAGYA 354
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KD+ SW +++GY ++ AR F MPE+D V W AM+ GY+R EA +F
Sbjct: 90 MPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVF 149
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97
M N + +L AY+ + G +E+A+R+
Sbjct: 150 DRMPHKN----SISWNGLLAAYV--RSGRLEEARRLF 180
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ + T +S ++ G D+A F MP R+ V + AMI GYLR +F A LF
Sbjct: 29 EDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFD 88
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF 121
+M D F+ +LT Y + + A+ + M KD +W AM+ G S
Sbjct: 89 KMP----HKDLFSWNLMLTGYARNR--RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHV 142
Query: 122 PTIR--------PDEVTYVGVLSACTHNG 142
R + +++ G+L+A +G
Sbjct: 143 DEARDVFDRMPHKNSISWNGLLAAYVRSG 171
>gi|255685336|gb|ACU28157.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685338|gb|ACU28158.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685340|gb|ACU28159.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685342|gb|ACU28160.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685344|gb|ACU28161.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685346|gb|ACU28162.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685348|gb|ACU28163.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685350|gb|ACU28164.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685352|gb|ACU28165.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685354|gb|ACU28166.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685356|gb|ACU28167.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685358|gb|ACU28168.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685360|gb|ACU28169.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685362|gb|ACU28170.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685364|gb|ACU28171.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685366|gb|ACU28172.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685368|gb|ACU28173.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685370|gb|ACU28174.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685372|gb|ACU28175.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685374|gb|ACU28176.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685376|gb|ACU28177.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685378|gb|ACU28178.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685380|gb|ACU28179.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685382|gb|ACU28180.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685384|gb|ACU28181.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685386|gb|ACU28182.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685388|gb|ACU28183.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685390|gb|ACU28184.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685392|gb|ACU28185.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685394|gb|ACU28186.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685396|gb|ACU28187.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685398|gb|ACU28188.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685400|gb|ACU28189.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685402|gb|ACU28190.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685404|gb|ACU28191.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685406|gb|ACU28192.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685408|gb|ACU28193.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685410|gb|ACU28194.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685412|gb|ACU28195.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685414|gb|ACU28196.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685416|gb|ACU28197.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685418|gb|ACU28198.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685420|gb|ACU28199.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685422|gb|ACU28200.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685424|gb|ACU28201.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685426|gb|ACU28202.1| At3g62980-like protein [Arabidopsis thaliana]
gi|255685428|gb|ACU28203.1| At3g62980-like protein [Arabidopsis thaliana]
Length = 176
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 39/154 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ +W +V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ +++EAL LF E
Sbjct: 20 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 79
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
MQ +RP+EFT+ +L+A MY
Sbjct: 80 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 139
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAI 117
KCG +E+A+RV + +KD ++AMI LA+
Sbjct: 140 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAM 173
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 87.4 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ ++V+SWT +VSGY G+V A F +MPERD W A+I G + F EA+ +F
Sbjct: 180 LTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M + RP+ T+ +L+A MY KC
Sbjct: 240 GRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNGLIDMYGKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
G++E A+ + ++ + TW ++I LA+ F +R PD VT+VG+L
Sbjct: 300 GNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVVTFVGLL 359
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 360 NACTHGG 366
>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 48/188 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D +SWT ++SGY G +D A F MP+++ W AM+ Y++ NRF EA LF
Sbjct: 185 HPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDR 244
Query: 63 MQTSNIRP-DEFTIVRILTAY---------------------------------MYCKCG 88
M+ N D+F +L+A MYCKCG
Sbjct: 245 MKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCG 304
Query: 89 DVEKAQRVLRKMLRKDKF--TWTAMIVGLAISDPFPT------------IRPDEVTYVGV 134
+EKA +V + ++ +W MI GLA+ + PD++T++ +
Sbjct: 305 CLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNL 364
Query: 135 LSACTHNG 142
L+AC H+G
Sbjct: 365 LTACAHSG 372
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 20/151 (13%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
T IV Y G ++ A Q F +P R W MI G A+ LF EM+
Sbjct: 294 TAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQR 353
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML-------RKDKFTWTAMIVGLA---- 116
+ PD+ T + +LTA + G VE+ + M+ R + F ++G A
Sbjct: 354 VAPDDITFLNLLTACAH--SGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVP 411
Query: 117 ----ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ D P + PD +L AC + N
Sbjct: 412 EARKLIDEMP-VSPDVTVLGTLLGACKKHRN 441
>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+ N DVI++T ++ GY+ G ++ AR+ F + RD V WTAMI GY++ ++A+ LF
Sbjct: 341 ISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELF 400
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +P+ +T+ +L+ MY K
Sbjct: 401 RSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKS 460
Query: 88 GDVEKAQRVLRKML-RKDKFTWTAMIVGLA---ISDPFPT---------IRPDEVTYVGV 134
G + A+ V + ++D TWT+MI+ LA + + T I+PD +TYVGV
Sbjct: 461 GSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGV 520
Query: 135 LSACTHNG 142
LSACTH G
Sbjct: 521 LSACTHVG 528
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 41/183 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V SW I+SGY G+++ A + F +MPE D V WTAMI GY ++ +F A+ +F
Sbjct: 74 MPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMF 133
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM + ++ P +FT+ +L + MY K
Sbjct: 134 REMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKS 193
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMI--------VGLAISDPFPTIRPDEVTYVGVLSACT 139
GD A+ V +M K +W MI V LA I D V++ ++S
Sbjct: 194 GDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYN 253
Query: 140 HNG 142
+G
Sbjct: 254 QHG 256
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 75/162 (46%), Gaps = 37/162 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK K SW ++S ++ G VD+A+ F QM ERD V W AMI GY + REAL +F
Sbjct: 206 MKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIF 265
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
+M S+ +PD+FT+ L+A MY K
Sbjct: 266 SKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSK 325
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIVG-LAISDPFPTIR 125
G VE AQ+++ + + D +TA++ G + + D P R
Sbjct: 326 SGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARR 367
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G ++ AR F + +RD + WT+MI + EALTLF M + I+P
Sbjct: 453 LITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKP 512
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMI-----VGL----- 115
D T V +L+A + G VE+ + M K + MI GL
Sbjct: 513 DHITYVGVLSACTH--VGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAH 570
Query: 116 AISDPFPTIRPDEVTYVGVLSACTHNGN 143
A + P I PD + + +L++C + N
Sbjct: 571 AFIENMP-IEPDVIAWGSLLASCKVHKN 597
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 24/116 (20%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98
L +++ Y + +A +F EM ++ F+ IL+ Y K G +E+A RV
Sbjct: 50 LMNNLMNFYAKTGFIYDAHRVFDEMPVKSV----FSWNIILSGY--AKGGRLEEAHRVFE 103
Query: 99 KMLRKDKFTWTAMIVGL---------------AISDPFPTIRPDEVTYVGVLSACT 139
+M D +WTAMIVG +SD P P + T VL++C
Sbjct: 104 EMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVP---PTQFTLTNVLASCA 156
Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++++ Y G + A + F +MP + W ++ GY + R EA +F EM P
Sbjct: 53 NLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMP----EP 108
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD----KFTWTAMIVGLA 116
D + ++ Y + G E A + R+M+ D +FT T ++ A
Sbjct: 109 DSVSWTAMIVG--YNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCA 156
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 44/154 (28%)
Query: 1 MKNKDVISWTDIVSGYINRG------------------------------------QVDI 24
M +DV+SW ++SGY G + +
Sbjct: 237 MIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKL 296
Query: 25 ARQYFAQMPERDY----VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
+Q A + ++ + A+I Y + A + + SN+ FT +L
Sbjct: 297 GKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFT--ALLD 354
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y+ K GD+ A+R+ + +D WTAMIVG
Sbjct: 355 GYV--KLGDINPARRIFDSLRVRDVVAWTAMIVG 386
>gi|255558236|ref|XP_002520145.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540637|gb|EEF42200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 327
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 33/147 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ T +VS G V AR+ F MP RD++ W+AMI GY + + REAL LF MQ
Sbjct: 149 DLVCQTAMVSACSKCGDVGFARELFDSMPHRDHIAWSAMIAGYAQCGQSREALALFHLMQ 208
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+++ E ++V +L+A MY KCGD+
Sbjct: 209 LEDVKVSEVSMVSVLSASSQLGALDNGRWAHAYIERNKIPVTVTLGTALVDMYAKCGDMN 268
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS 118
KA V M K+ +TW++ I GLA++
Sbjct: 269 KAMEVFWAMKEKNVYTWSSAIYGLAMN 295
>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 623
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW +++G+I + A++ F +MP+R+ V WT M++G L+ N AL +F
Sbjct: 252 MPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVF 311
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M IRP++ T + + A +Y KC
Sbjct: 312 NGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKC 371
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPTIR--PDEVTYVGVL 135
G++ A++V KD +W MI +A+ + R P++VTYVG+L
Sbjct: 372 GEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLL 431
Query: 136 SACTHNG 142
SAC+H+G
Sbjct: 432 SACSHSG 438
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 18/152 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++SG G D AR F MPER+ V W AMI GY R R EAL LF
Sbjct: 190 MPERNVMSWTTMISGLARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLF 249
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M ++ I T ++ K D++KAQ + +M +++ +WT M+ G +
Sbjct: 250 MNMPERDVASWNIMI----TGFIQNK--DLKKAQELFDEMPKRNVVSWTTMMNGCLQGNE 303
Query: 121 ------------FPTIRPDEVTYVGVLSACTH 140
IRP++VT++G + A ++
Sbjct: 304 SEMALQVFNGMLVDGIRPNQVTFLGAVDAGSN 335
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V++WT ++SGY +VD AR F +MPER+ V W M++ Y R A LF M
Sbjct: 100 RNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGM 159
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ IL A + + G +++A+R+ +M ++ +WT MI GLA S
Sbjct: 160 PVRDAGS-----WNILLAAL-VRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADE 213
Query: 124 IR 125
R
Sbjct: 214 AR 215
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V AR+ F + P+RD V WTAM+ Y R + EA L RPD V
Sbjct: 53 GRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLH-------RPDARRNVVTW 105
Query: 80 TAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
TA + Y + V++A+ + +M ++ +W M+ A
Sbjct: 106 TALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYA 144
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ +AR+ F E+D + W MI Y EA+ L+ +MQ + +P++ T
Sbjct: 368 YAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTY 427
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105
V +L+A + G V++ R+ M KDK
Sbjct: 428 VGLLSACSH--SGLVDEGLRIFEYMA-KDK 454
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 62/191 (32%), Positives = 83/191 (43%), Gaps = 52/191 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQM-PERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV++ +V Y G A + F M P ++ V W MI + R +EAL LF EM
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257
Query: 64 Q-----TSNIRPDEFTIVRILTAY----------------------------------MY 84
TS+ PD+ T V +L A MY
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNALIDMY 317
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYV 132
KCG VE+A V M R+D +T+T+MI GLA+ +RP+EVT++
Sbjct: 318 AKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTFL 377
Query: 133 GVLSACTHNGN 143
GVLSAC H GN
Sbjct: 378 GVLSACCHAGN 388
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G V+ A + F M RD +T+MI G R EAL LF +M+ + +RP+
Sbjct: 313 LIDMYAKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPN 372
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLA-------- 116
E T + +L+A C G++E R M + + ++G A
Sbjct: 373 EVTFLGVLSA--CCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEE 430
Query: 117 ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P IRPD + + +L+AC +G+
Sbjct: 431 LVSVMP-IRPDAIIWGSLLAACRAHGH 456
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 68/186 (36%), Gaps = 55/186 (29%)
Query: 12 IVSGYINRGQVDIARQYFAQM---PERDYVLWTAMIDGYLRVNRFREALTLFPEM----- 63
+V+ Y+ G+ +A FA P D V WTAM+ + R+ FREA LF M
Sbjct: 100 LVALYLACGRRGVASDLFAGAGGGPAPDVVSWTAMVTWHARLGLFREAAELFLAMADDGA 159
Query: 64 -----------QTSNIRPDEFTIV-----RILTAY-------------MYCKCGDVEKAQ 94
+ E + R+L A MY KCGD A
Sbjct: 160 VVVDAVAAAAAFAACAGAGELVLAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAAL 219
Query: 95 RVLRKML-RKDKFTWTAMIVGLA----ISDPFPTIR-------------PDEVTYVGVLS 136
R R M+ K+ TW MI A + + R PD+ T+V VL
Sbjct: 220 RCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLG 279
Query: 137 ACTHNG 142
AC G
Sbjct: 280 ACARLG 285
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 81/193 (41%), Gaps = 51/193 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +S T +VSGY V AR FA + ++D V W A+I GY + EAL LF
Sbjct: 319 MPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLF 378
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
++ ++ P +T +L A
Sbjct: 379 RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLI 438
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEV 129
MY KCG VE+ RV M+ KD +W MI+G A + + F + +PD V
Sbjct: 439 DMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHV 498
Query: 130 TYVGVLSACTHNG 142
T +G L AC+H G
Sbjct: 499 TMIGTLCACSHAG 511
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V S+ I+S + G VD + F+ MPE+D W +MI G+ + +RF EAL F
Sbjct: 85 MSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWF 144
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------YM-------YCKC 87
M + ++++ L+A +M Y KC
Sbjct: 145 VRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKC 204
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV-----GLAIS--DPFPTI-----RPDEVTYVGVL 135
G V A+RV M K+ +W +I G AI + F + +PDEVT V+
Sbjct: 205 GLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVV 264
Query: 136 SACT 139
SAC
Sbjct: 265 SACA 268
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y+ G V+ + F M E+D+V W MI GY + EAL LF +M
Sbjct: 430 DIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKML 489
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA- 116
S +PD T++ L A + G VE+ +R M + KD +T ++G A
Sbjct: 490 ESGEKPDHVTMIGTLCACSH--AGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAG 547
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ + P +PD V + +LSAC + N T
Sbjct: 548 CLEEAKDLIESMPK-QPDAVVWSSLLSACKVHRNITL 583
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 42/180 (23%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G V AR+ F M E++ V W +I Y + EAL F M
Sbjct: 190 DVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMT 249
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
+PDE T+ +++A MY KCG V
Sbjct: 250 ELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRV 309
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDP-------FPTIR-PDEVTYVGVLSACTHNG 142
+A+ V +M ++ + T M+ G A S F TI+ D V++ +++ T NG
Sbjct: 310 NEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNG 369
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 47/188 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M D +SW ++SG+ G + +A F ++PE+ V W +MI GY + ++ A+ +F
Sbjct: 346 MPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIF 405
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------YMYCKCG 88
+MQ +PD T+ IL+A MY +CG
Sbjct: 406 LQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCG 465
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGV 134
+ +A+ V +M L++D +W AMI G A F T ++P +T++ V
Sbjct: 466 AIVEARMVFDEMNLQRDVISWNAMIGGYAYHG-FATEALQLFDLMKQCNVQPSYITFISV 524
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 525 LNACAHAG 532
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQ--VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
M N+D++SW ++SGYI+ G V+ AR F QMPE D V W M+ GY + +A
Sbjct: 114 MPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEE 173
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
LF EM N+ + +++ Y+ G VEKA + M ++D + A+I GL +
Sbjct: 174 LFNEMPERNV----VSWNAMVSGYLM--NGHVEKAIEFFKLMPKRDSASLRALISGLIQN 227
Query: 119 DPF 121
D
Sbjct: 228 DKL 230
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VISW ++ Y+ G + AR+ F +M ERD W MI GY+++ +EA LF M
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM 346
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
PD + +++ + + G ++ A + +++ K +W +MI G ++ +
Sbjct: 347 P----EPDTLSWNMMISG--FSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKG 400
Query: 124 I------------RPDEVTYVGVLSACT 139
+PD T +LSAC
Sbjct: 401 AMNIFLQMQLEGKKPDRHTLSSILSACA 428
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-----VNRFREALTL 59
+ I+W +++ Y+ R ++ ARQ F +MP RD V W M+ GY+ V R R
Sbjct: 87 NTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQ 146
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
PE D + +L+ Y K G ++KA+ + +M ++ +W AM+ G
Sbjct: 147 MPE-------TDCVSWNTMLSG--YAKSGMMDKAEELFNEMPERNVVSWNAMVSG 192
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 38/152 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +VSGY+ G V+ A ++F MP+RD A+I G ++ ++ EA +
Sbjct: 178 MPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERIL 237
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------------Y 82
+ + + D L A
Sbjct: 238 LQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIM 297
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y + GD+ A+ + KM+ +D F+W MI G
Sbjct: 298 CYVRAGDIVSARELFDKMVERDTFSWNTMISG 329
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+V+ Y G + AR F +M +RD + W AMI GY EAL LF M+ N+
Sbjct: 455 NSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNV 514
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVG------- 114
+P T + +L A + G +E+ +R M+ + + I+G
Sbjct: 515 QPSYITFISVLNACAH--AGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEE 572
Query: 115 -LAISDPFPTIRPDEVTYVGVLSAC-THNGNE 144
+++ + P PD+ + +L AC HN E
Sbjct: 573 AMSLINSMPC-EPDKAVWGALLGACKVHNNVE 603
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+S I G+++ AR+ F + + W MI Y++ +A LF EM +I
Sbjct: 64 ISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI---- 119
Query: 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ +L+ Y+ C VE+A+ + +M D +W M+ G A S
Sbjct: 120 VSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKS 165
>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 561
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 18/151 (11%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+SW ++SG G + AR+ F +MPE+D + W M+DGY++V + +A LF EM
Sbjct: 211 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 270
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------- 116
P+ + YCK GD+E A+ + KM K+ +WT ++ G A
Sbjct: 271 ------PERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLARE 324
Query: 117 ---ISDPF--PTIRPDEVTYVGVLSACTHNG 142
+ D ++ D T + +L+AC +G
Sbjct: 325 AISLFDQMEKACLKLDNGTVMSILAACAESG 355
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 51/81 (62%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW+ +V GY G +++AR F +MP ++ V WT ++ G+ REA++LF
Sbjct: 270 MPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLF 329
Query: 61 PEMQTSNIRPDEFTIVRILTA 81
+M+ + ++ D T++ IL A
Sbjct: 330 DQMEKACLKLDNGTVMSILAA 350
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ISW ++ GY+ G++D A + F +MPER+ V W+ M+ GY + A LF
Sbjct: 239 MPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLF 298
Query: 61 PEMQTSNI 68
+M N+
Sbjct: 299 DKMPVKNL 306
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 47/188 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M D +SW ++SG+ G + +A F ++PE+ V W +MI GY + ++ A+ +F
Sbjct: 346 MPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIF 405
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------YMYCKCG 88
+MQ +PD T+ IL+A MY +CG
Sbjct: 406 LQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCG 465
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGV 134
+ +A+ V +M L++D +W AMI G A F T ++P +T++ V
Sbjct: 466 AIVEARMVFDEMNLQRDVISWNAMIGGYAYHG-FATEALQLFDLMKQCNVQPSYITFISV 524
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 525 LNACAHAG 532
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQ--VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
M N+D++SW ++SGYI+ G V+ AR F QMPE D V W M+ GY + +A
Sbjct: 114 MPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEE 173
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
LF EM N+ + +++ Y+ G VEKA + M ++D + A++ GL +
Sbjct: 174 LFNEMPERNV----VSWNAMVSGYLM--NGHVEKAIEFFKLMPKRDSASLRALVSGLIQN 227
Query: 119 DPF 121
D
Sbjct: 228 DKL 230
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 18/148 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++VISW ++ Y+ G + AR+ F +M ERD W MI GY+++ +EA LF M
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM 346
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
PD + +++ + + G ++ A + +++ K +W +MI G ++ +
Sbjct: 347 P----EPDTLSWNMMISG--FSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKG 400
Query: 124 I------------RPDEVTYVGVLSACT 139
+PD T +LSAC
Sbjct: 401 AMNIFLQMQLEGKKPDRHTLSSILSACA 428
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR-----VNRFREALTL 59
+ I+W +++ Y+ R ++ ARQ F +MP RD V W M+ GY+ V R R
Sbjct: 87 NTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQ 146
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
PE D + +L+ Y K G ++KA+ + +M ++ +W AM+ G
Sbjct: 147 MPE-------TDCVSWNTMLSG--YAKSGTMDKAEELFNEMPERNVVSWNAMVSG 192
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 61/152 (40%), Gaps = 38/152 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +VSGY+ G V+ A ++F MP+RD A++ G ++ ++ EA +
Sbjct: 178 MPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERIL 237
Query: 61 PEMQTSNIRPDEFTIVRILTA--------------------------------------Y 82
+ + + D L A
Sbjct: 238 LQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIM 297
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y + GD+ A+ + KM+ +D F+W MI G
Sbjct: 298 CYVRAGDIVSARELFDKMVERDTFSWNTMISG 329
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
+V+ Y G + AR F +M +RD + W AMI GY EAL LF M+ N+
Sbjct: 455 NSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNV 514
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVG------- 114
+P T + +L A + G +E+ +R M+ + + I+G
Sbjct: 515 QPSYITFISVLNACAH--AGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEE 572
Query: 115 -LAISDPFPTIRPDEVTYVGVLSAC-THNGNE 144
+++ + P PD+ + +L AC HN E
Sbjct: 573 AMSLINSMPC-EPDKAVWGALLGACKVHNNVE 603
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+S I G+++ AR+ F + + W MI Y++ +A LF EM +I
Sbjct: 64 ISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDI---- 119
Query: 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ +L+ Y+ C VE+A+ + +M D +W M+ G A S
Sbjct: 120 VSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKS 165
>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
Length = 842
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W IV+GY+ G+VD A + F MPE++ V W +I G ++ + F EA+ +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
MQ+ + D T++ I +A M+ +
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGV 134
CGD E A + + +D WTA I + + D ++PD V +VG
Sbjct: 518 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 577
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 578 LTACSHGG 585
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ +V Y G++D AR+ F +M ER+ V WT+MI GY R + ++A+ LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96
+ + P+ T+V +++A K D+E ++V
Sbjct: 227 VRDEEVTPNSVTMVCVISA--CAKLEDLETGEKV 258
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 46/147 (31%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA----------------- 81
++ ++I GY EA+ LF M S I PD++T L+A
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 82 ----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------ 119
+ Y +CG+++ A++V +M ++ +WT+MI G A D
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 120 --PFPTIR-----PDEVTYVGVLSACT 139
F +R P+ VT V V+SAC
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACA 247
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 33/136 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y+ +D+A++ F + + L AM Y+R REAL +F M S +RPD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+++ +++ MY KC + A R+
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Query: 99 KMLRKDKFTWTAMIVG 114
+M K TW +++ G
Sbjct: 397 RMSNKTVVTWNSIVAG 412
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V + G + A F + RD WTA I A+ LF +M
Sbjct: 504 DVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMI 563
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMI-----VG 114
++PD V LTA + G V++ + + ML+ + + M+ G
Sbjct: 564 EQGLKPDGVAFVGALTACSH--GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAG 621
Query: 115 L-----AISDPFPTIRPDEVTYVGVLSACTHNGN 143
L + + P + P++V + +L+AC GN
Sbjct: 622 LLEEAVQLIEDMP-MEPNDVIWNSLLAACRVQGN 654
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A+ID Y++ +R A +F M + T I+ Y+ + G+V+ A M
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTV----VTWNSIVAGYV--ENGEVDAAWETFETMP 430
Query: 102 RKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
K+ +W +I GL F + D VT + + SAC H G
Sbjct: 431 EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
>gi|326519006|dbj|BAJ92663.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 547
Score = 87.0 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT ++ GY RG + AR+ F QMPER+ V WT M+ Y F+EA+ LF
Sbjct: 179 MPARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQEAMELF 238
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+M N+ I L A G+V++A R+ +M ++ +WT M+ GLA
Sbjct: 239 NKMPQRNLHSWNIMISGCLRA------GNVDEAVRLFERMPDRNAVSWTTMVTGLA 288
Score = 82.0 bits (201), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 42/183 (22%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+N+D +W +++ Y N GQ++ A++ F +P +D V W A+I GY + E + LF
Sbjct: 305 ENRDTAAWNAMITAYANDGQMNEAQRLFDSIPAKDLVSWNAIIHGYAKNKHKGEVMGLFL 364
Query: 62 EMQTSNIRPDEFTIVRILTA------------------------------YMYCKCGDVE 91
M S + PD T++ +L MY + GD+
Sbjct: 365 LMLRSAVSPDRTTLISVLVTSESTVEVGQIHGLATTRGLLSDTSLGNALLTMYSRSGDLH 424
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPTI-----RPDEVTYVGVLSACT 139
A +V + + KD TWT+M+ A F + +P T++ LSAC+
Sbjct: 425 SAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQHGYKPSSTTFIAALSACS 484
Query: 140 HNG 142
H G
Sbjct: 485 HAG 487
Score = 75.5 bits (184), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V +WT +VSGY +VD AR+ F MP RD V WTAM+ GY R+ REA LF
Sbjct: 117 MPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVVSWTAMLQGYARIGMMREARGLF 176
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M P + + Y + G + +A+ V +M ++ TWT M+ A
Sbjct: 177 DAM------PARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYA 226
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++SG + G VD A + F +MP+R+ V WT M+ G + R A F
Sbjct: 241 MPQRNLHSWNIMISGCLRAGNVDEAVRLFERMPDRNAVSWTTMVTGLAQNGRVSMAREFF 300
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M + D ++TA Y G + +AQR+ + KD +W A+I G A
Sbjct: 301 DGMPENR---DTAAWNAMITA--YANDGQMNEAQRLFDSIPAKDLVSWNAIIHGYA 351
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ GY G+VD AR+ F MP + WT ++ GY R R EA LF M ++
Sbjct: 95 TAMLDGYFKAGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDV- 153
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ +L Y + G + +A+ + M +D +WT M+ G A
Sbjct: 154 ---VSWTAMLQG--YARIGMMREARGLFDAMPARDFVSWTVMLQGYA 195
Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G + A Q F + E+D + WT+M+ + R AL F +M +P
Sbjct: 413 LLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQHGYKPS 472
Query: 72 EFTIVRILTAYMYCKCGDVEKAQR 95
T + L+A + D +A R
Sbjct: 473 STTFIAALSACSHAGLVDKGRASR 496
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G + AR++F MP+RD V W A+I GY + + EAL +F
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
E++ + T L+ MY KC
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVL 135
G +++A + KD +W M+ G L + + T ++PDE+T VGVL
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 503 SACSHTG 509
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K+ D++ W +S ++ G D A F MP R V + AMI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 61 PEMQTSNIRPDEFTIVRILTAYMY-CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA--- 116
+M ++ F+ +LT Y+ C+ GD A+R+ M KD +W +++ G A
Sbjct: 104 DQMPERDL----FSWNVMLTGYVRNCRLGD---ARRLFDLMPEKDVVSWNSLLSGYAQNG 156
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNG 142
+ D P + +++ G+L+A HNG
Sbjct: 157 YVDEAREVFDNMP--EKNSISWNGLLAAYVHNG 187
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW ++SGY G + AR+ F + P RD WTAM+ GY++ EA T F
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
Query: 61 PEMQTSN-----------IRPDEFTIVRILTAYMYCK--------------CGDVEKAQR 95
EM N ++ + I R L M C+ GD+ +A++
Sbjct: 290 DEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF 121
M ++D +W A+I G A S +
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHY 375
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW ++SGY G VD AR+ F MPE++ + W ++ Y+ R EA LF
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196
Query: 61 PE-----------MQTSNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
+ +R + R L M Y + G + +A+R
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARR 256
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ + +D FTWTAM+ G
Sbjct: 257 LFDESPTRDVFTWTAMVSG 275
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 80/176 (45%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y +G++D A F++M ++D V WT+++ GY + EA+ LF +M+ S + PD
Sbjct: 82 LIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPD 141
Query: 72 EFTIVRILTA---------------------------------YMYCKCGDVEKAQRVLR 98
+ + +L+A MY KCG + A R
Sbjct: 142 QIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFD 201
Query: 99 KMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGVLSACTHNG 142
M +D +WTA+IVG A + +PD +T++G+L AC+HNG
Sbjct: 202 NMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNG 257
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 45/149 (30%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY------------- 82
D V W ++I G +R +AL+ F +M++ +++ DE+T+ +L ++
Sbjct: 5 DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64
Query: 83 --------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF- 121
MY K G ++ A V KM+ KD +WT+++ G + + +
Sbjct: 65 CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124
Query: 122 -----------PTIRPDEVTYVGVLSACT 139
+ PD++ VLSAC
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACA 153
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++GY G + AR++F MP+RD V W A+I GY + + EAL +F
Sbjct: 323 MPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMF 382
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
E++ + T L+ MY KC
Sbjct: 383 VEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKC 442
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVL 135
G +++A + KD +W M+ G L + + T ++PDE+T VGVL
Sbjct: 443 GSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVL 502
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 503 SACSHTG 509
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K+ D++ W +S ++ G D A F MP R V + AMI GYLR ++F A LF
Sbjct: 44 VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103
Query: 61 PEMQTSNIRPDEFTIVRILTAYMY-CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA--- 116
+M ++ F+ +LT Y+ C+ GD A+R+ M KD +W +++ G A
Sbjct: 104 DQMPERDL----FSWNVMLTGYVRNCRLGD---ARRLFDLMPEKDVVSWNSLLSGYAQNG 156
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNG 142
+ D P + +++ G+L+A HNG
Sbjct: 157 YVDEAREVFDNMP--EKNSISWNGLLAAYVHNG 187
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D ISW ++SGY G + AR+ F + P RD WTAM+ GY++ EA T F
Sbjct: 230 MPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFF 289
Query: 61 PEMQTSN-----------IRPDEFTIVRILTAYMYCK--------------CGDVEKAQR 95
EM N ++ + I R L M C+ GD+ +A++
Sbjct: 290 DEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARK 349
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPF 121
M ++D +W A+I G A S +
Sbjct: 350 FFDMMPQRDCVSWAAIIAGYAQSGHY 375
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDV+SW ++SGY G VD AR+ F MPE++ + W ++ Y+ R EA LF
Sbjct: 137 MPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLF 196
Query: 61 PE-----------MQTSNIRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
+ +R + R L M Y + G + +A+R
Sbjct: 197 ESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARR 256
Query: 96 VLRKMLRKDKFTWTAMIVG 114
+ + +D FTWTAM+ G
Sbjct: 257 LFDESPTRDVFTWTAMVSG 275
>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
Length = 565
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+VI T I+ Y G++ AR F +MP+R+ V+W +MI + + R EAL LF +M+
Sbjct: 247 NVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDME 306
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ P++ T + ++ A MY K GD +
Sbjct: 307 LAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDAD 366
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSAC 138
A ++ K+ +KD WT MI GLAI + + PD++TY+ VL AC
Sbjct: 367 TALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWAC 426
Query: 139 THNG 142
+H G
Sbjct: 427 SHLG 430
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 52/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + + +++ Y++ G ++ + F +P+ + V WT++I G++ ++ +EAL LF +M+
Sbjct: 139 DVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDME 198
Query: 65 TSNIRPDEFT------------------IVR--------------------ILTAY--MY 84
+ P+E T +VR + TA MY
Sbjct: 199 NEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMDMY 258
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------------LAISDPFPTIRPDEVTYV 132
KCG + A+ + KM +++ W +MI L + P++ T++
Sbjct: 259 AKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFL 318
Query: 133 GVLSACTH 140
V+ ACTH
Sbjct: 319 SVIRACTH 326
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 54/140 (38%), Gaps = 34/140 (24%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT---IV 76
G ++ AR F Q + +W +MI GY AL ++ EMQ PD FT ++
Sbjct: 53 GDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVL 112
Query: 77 RILTAY------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
++ +A MY CGD+ +V + + +
Sbjct: 113 KVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVV 172
Query: 107 TWTAMIVGLAISD-PFPTIR 125
WT++I G +D P +R
Sbjct: 173 AWTSLIAGFVNNDQPKEALR 192
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 81/189 (42%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S T +++ Y +G V+ AR F +M ERD V W MIDGY + +AL LF
Sbjct: 185 MPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLF 244
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
++ +PDE T+V L+A MY K
Sbjct: 245 QKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSK 304
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVG 133
CG +E+A V RKD W AMI G A+ ++P ++T++G
Sbjct: 305 CGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIG 364
Query: 134 VLSACTHNG 142
L AC H G
Sbjct: 365 TLQACAHAG 373
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 19/153 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT +++G G++D AR F +MPER+ V W AMI GY + R EAL LF
Sbjct: 203 MPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLF 262
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
M ++ P T++ L + GD+ +A+++ +M +K+ +WT MI G
Sbjct: 263 ERMPERDL-PSWNTMITGLI-----QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGE 316
Query: 117 -------ISDPFPT--IRPDEVTYVGVLSACTH 140
S T +P++ T+V VL AC++
Sbjct: 317 SEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 349
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V++WT +V GYI ++ A + F +MP ++ V W MIDGY + R A+ LF +M
Sbjct: 113 KNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKM 172
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
P+ + M +CG +E+A+R+ +M +D +WTAMI GL+
Sbjct: 173 ------PERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLS 219
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D+ SW +++G I G + AR+ F +MP+++ + WT MI G ++ EAL +F
Sbjct: 265 MPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIF 324
Query: 61 PEMQTSN-IRPDEFTIVRILTA---------------------------------YMYCK 86
M ++N +P++ T V +L A MY K
Sbjct: 325 SRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSK 384
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYV 132
CG++ A+++ + ++D +W +I A + F +R PD+VTYV
Sbjct: 385 CGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYV 444
Query: 133 GVLSACTHNG 142
G+LSAC+H G
Sbjct: 445 GLLSACSHAG 454
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK+V+SW ++ GY G++D A F +MPER+ V W ++ + R EA LF
Sbjct: 141 MPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF 200
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M P+ I K G +++A+ + +M ++ +W AMI G A
Sbjct: 201 DRM------PERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYA 250
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 22/154 (14%)
Query: 10 TDIVSGYINR----GQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
T +VS IN G++ AR+ F +RD V W +I Y +EA+ F EM
Sbjct: 372 TFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEM 431
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK-------MLRKDKFTWTAMIVGLA 116
+ S +PD+ T V +L+A + G VE+ + + ++R+D + + G A
Sbjct: 432 RKSGFKPDDVTYVGLLSACSH--AGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRA 489
Query: 117 --ISDPFPTI-----RPDEVTYVGVLSACTHNGN 143
+ + F I +P + +L+ C + N
Sbjct: 490 GRLKEAFGFIERLETKPSARVWGALLAGCNVHAN 523
>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g35030, mitochondrial; Flags: Precursor
gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V++WT +VSGY+ Q+ IA F +MPER+ V W MIDGY + R +AL LF EM
Sbjct: 107 KNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEM 166
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
NI ++V+ L + G +++A + +M R+D +WTAM+ GLA
Sbjct: 167 PERNI-VSWNSMVKALV-----QRGRIDEAMNLFERMPRRDVVSWTAMVDGLA 213
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V G G+VD AR+ F MPER+ + W AMI GY + NR EA LF
Sbjct: 197 MPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M D + ++T ++ + ++ KA + +M K+ +WT MI G +
Sbjct: 257 QVMPER----DFASWNTMITGFIRNR--EMNKACGLFDRMPEKNVISWTTMITGYVENKE 310
Query: 121 FP-------------TIRPDEVTYVGVLSACT 139
+++P+ TYV +LSAC+
Sbjct: 311 NEEALNVFSKMLRDGSVKPNVGTYVSILSACS 342
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW ++ GY G++D A + F +MPER+ V W +M+ ++ R EA+ LF
Sbjct: 135 MPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLF 194
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M R D + ++ K G V++A+R+ M ++ +W AMI G A
Sbjct: 195 ERMP----RRDVVSWTAMVDG--LAKNGKVDEARRLFDCMPERNIISWNAMITGYA 244
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW +++G+I +++ A F +MPE++ + WT MI GY+ EAL +F
Sbjct: 259 MPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVF 318
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
+M + +++P+ T V IL+A MY K
Sbjct: 319 SKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSK 378
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIV-------GLAISDPFPTIR-----PDEVTYV 132
G++ A+++ L ++D +W +MI G + + +R P VTY+
Sbjct: 379 SGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYL 438
Query: 133 GVLSACTHNG 142
+L AC+H G
Sbjct: 439 NLLFACSHAG 448
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G++ AR+ F +PERD V WT +I GY+++ REA LF + + R + T ++
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDS---RKNVVTWTAMV 116
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ Y+ K + A+ + ++M ++ +W MI G A S
Sbjct: 117 SGYLRSK--QLSIAEMLFQEMPERNVVSWNTMIDGYAQS 153
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ I + +++ Y G++ AR+ F + +RD + W +MI Y +EA+ ++
Sbjct: 364 KNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYN 423
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVG 114
+M+ +P T + +L A + G VEK + + LR++ +T + G
Sbjct: 424 QMRKHGFKPSAVTYLNLLFACSH--AGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCG 481
Query: 115 LA--ISDPFPTIRPDEVT-----YVGVLSACT-HN 141
A + D I D+ Y +LSAC HN
Sbjct: 482 RAGRLKDVTNFINCDDARLSRSFYGAILSACNVHN 516
>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 786
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 48/188 (25%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ + +T ++ GYI G ++ A+ F + +RD V WTAMI GY + + EA+ LF
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR 402
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M RP+ +T+ +L+ MY K G
Sbjct: 403 SMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462
Query: 89 DVEKAQRVLRKMLR--KDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
++ A R ++R +D +WT+MI+ LA + F T +RPD +TYVGV
Sbjct: 463 NITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521
Query: 135 LSACTHNG 142
SACTH G
Sbjct: 522 FSACTHAG 529
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 33/146 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + SW ++S Y RG +D ++F Q+P+RD V WT MI GY + ++ +A+ +
Sbjct: 75 MPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVM 134
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I P +FT+ +L + MY KC
Sbjct: 135 GDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV 113
GD A+ V +M+ +D +W AMI
Sbjct: 195 GDPMMAKFVFDRMVVRDISSWNAMIA 220
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 34/135 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ SW +++ ++ GQ+D+A F QM ERD V W +MI G+ + AL +F +M
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM 269
Query: 64 -QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ S + PD FT+ +L+A MY +CG
Sbjct: 270 LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG 329
Query: 90 VEKAQRVLRKMLRKD 104
VE A+R++ + KD
Sbjct: 330 VETARRLIEQRGTKD 344
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G + A + F + ERD V WT+MI + EAL LF M +RP
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT----AMIVGL----------- 115
D T V + +A + G V + ++ M DK T A +V L
Sbjct: 514 DHITYVGVFSACTH--AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571
Query: 116 AISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P I PD VT+ +LSAC + N
Sbjct: 572 EFIEKMP-IEPDVVTWGSLLSACRVHKN 598
>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
Length = 932
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 42/184 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKD+ +W +++ Y++ + A + F M ER+ V W AMIDGY R EA+
Sbjct: 218 MPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHL 277
Query: 61 PEMQTSNIRPDEFTIVRILTA------------------------------YMYCKCGDV 90
M S IRP+E T+ ILT+ MY + GD+
Sbjct: 278 ILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRIGDI 337
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSAC 138
++ + KD +WTAM++ +PDE+T+VGVLSAC
Sbjct: 338 SSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSAC 397
Query: 139 THNG 142
+H G
Sbjct: 398 SHAG 401
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SWT +V GY G +D AR F QMPE++ + WTAM+ Y+ R EAL LF
Sbjct: 94 MPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLF 153
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
EM N+ ++ +++ + K V +A ++ M ++ +WT M+ GLA
Sbjct: 154 HEMPQRNL----YSWNTMISGCLDGK--RVNEAFKLFHLMPLRNAVSWTIMVSGLA 203
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + +V SWT ++SGY GQV A Q F QMP ++ V WT M+ GY R +A ++F
Sbjct: 63 MIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVF 122
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
+M P++ TI Y G ++A ++ +M +++ ++W MI G
Sbjct: 123 NQM------PEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISG 170
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + D +S+T +++ Y+ ++ A + F MP+R V +AMIDGY + A +F
Sbjct: 1 MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M +N+ F+ +++ Y + G V KA ++ +M K+ +WT M++G A
Sbjct: 61 DAMIDTNV----FSWTSLISGYF--RDGQVAKACQLFDQMPAKNVVSWTTMVLGYA 110
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +++ + ++ GY G +D A++ F M + + WT++I GY R + +A LF
Sbjct: 32 MPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLF 91
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M N+ + Y + G +++A+ V +M K+ +WTAM+
Sbjct: 92 DQMPAKNV------VSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMM 137
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW ++SG ++ +V+ A + F MP R+ V WT M+ G R + A F
Sbjct: 156 MPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYF 215
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M +I ++TAY+ +C VE A + M ++ TW AMI G A P
Sbjct: 216 DQMPNKDIA----AWNAMITAYVD-ECLIVE-ASELFNLMTERNIVTWNAMIDGYARHRP 269
Query: 121 ------------FPTIRPDEVTYVGVLSAC 138
IRP+E T +L++C
Sbjct: 270 DGEAMKHLILMLRSCIRPNETTMTIILTSC 299
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D I +++ Y N G++D ARQ F MP + + W +MI G+ + EAL LF EM
Sbjct: 370 DTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMN 429
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+R D+F++ +++A YCKCG VE
Sbjct: 430 KLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVE 489
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACT 139
+++ +M++ D+ W +M++G A + + F +R P ++T+VGVLSAC
Sbjct: 490 HGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACD 549
Query: 140 HNG 142
H G
Sbjct: 550 HCG 552
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 36/152 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +KD SW ++SG+ G +++AR+ F +MP ++ + W +MI GY R +EA+ LF
Sbjct: 99 MPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLF 158
Query: 61 PEMQTSNIR---PDEFTIVRILTA---------------------------------YMY 84
++ + + D F + ++ A +Y
Sbjct: 159 KDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLY 218
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
KCGD++ A VL M D F+ +A+I G A
Sbjct: 219 GKCGDIDSANHVLNLMKEPDAFSLSALISGYA 250
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+K++ISW + ++ G+++ AR F +MP+RD V W MI GY+ F +A F E
Sbjct: 773 DKNLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSE 832
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
MQ + IRP FT +L+ ++ C + +++ M+R
Sbjct: 833 MQKAGIRPSGFTYSTLLS-FVSSAC----RGKQIHASMIR 867
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84
A+Q F +MP+R+ W MI+GYL+ ++L LF M D F+ +++ +
Sbjct: 61 AQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP----HKDAFSWNVVISG--F 114
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNE 144
K G++E A+R+ +M K+ W +MI G A + RP E VG+ + N E
Sbjct: 115 AKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNG-----RPKEA--VGLFKDLSLNPLE 167
Query: 145 TF 146
F
Sbjct: 168 RF 169
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 79/215 (36%), Gaps = 76/215 (35%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK D S + ++SGY + G+++ AR+ F VLW +MI GY+ N EAL LF
Sbjct: 234 MKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELF 293
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M+ ++ D T +L+A MY KC
Sbjct: 294 NNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKC 353
Query: 88 -------------------------------GDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
G ++ A+++ M K +W +MIVG +
Sbjct: 354 RRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFS 413
Query: 117 IS-------DPFPT-----IRPDEVTYVGVLSACT 139
+ D F +R D+ + GV+SAC
Sbjct: 414 QNACPIEALDLFCEMNKLGLRMDKFSLAGVISACA 448
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 61/159 (38%), Gaps = 45/159 (28%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY------ 82
F ++ + D VL AMI Y AL LF N+RP EFT+ +L+A
Sbjct: 999 FEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPV 1058
Query: 83 ---------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
MY K G ++ A + K+ +D +W MI+GL
Sbjct: 1059 DQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGL 1118
Query: 116 A----ISDPFPTIR--------PDEVTYVGVLSACTHNG 142
A +S + PDE+T GVL AC G
Sbjct: 1119 AYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGG 1157
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D I T +V Y G V+ R+ F +M + D V W +M+ GY EAL +F +M+
Sbjct: 471 DQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMR 530
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
+ ++P + T V +L+A + CG VE+ ++
Sbjct: 531 SVGVQPTDITFVGVLSACDH--CGLVEEGRK 559
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DVI + +V Y G +D A + FA++ RD + W MI G R +AL +F E+
Sbjct: 1076 DVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELL 1135
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDV 90
PDE T+ +L A C G +
Sbjct: 1136 IGGPPPDEITLAGVLLA---CNVGGL 1158
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
+V+ ++ Y G VD A F M E D + W ++I + AL F M+
Sbjct: 874 NVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMR 933
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
+ PD+FT+ ++T + D+EK +++ +R
Sbjct: 934 SVGYSPDQFTVSTVIT--VCSNLQDLEKGEQIFALCIR 969
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERD-------YVLWTAMIDGYLRVNRF 53
M +DV+SW ++SGY++ G D A ++F++M + Y + + R +
Sbjct: 802 MPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQI 861
Query: 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113
++ + + SN+ +V MY K G V+ A V M D +W ++I
Sbjct: 862 HASM-IRNGVDLSNV------VVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIW 914
Query: 114 GLAISD-------PFPTIR-----PDEVTYVGVLSACTH 140
S F +R PD+ T V++ C++
Sbjct: 915 SCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSN 953
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+S+T ++ GY G + AR F + PE+D V W+A+I GY R + EA+ +F
Sbjct: 228 MVERNVVSFTVMIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIF 287
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + N++PDEF +V +++A M+ K
Sbjct: 288 FEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAK 347
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CG++EKA ++ + M +D ++I GL+I + F + PD V + +
Sbjct: 348 CGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVI 407
Query: 135 LSACTHNG 142
L+AC+ G
Sbjct: 408 LTACSRGG 415
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 20/153 (13%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++V+SWT +V+GY + G ++ A++ F +MPER+ W AMI G + A +F EM
Sbjct: 169 RNVVSWTAMVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEM 228
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP- 122
N+ FT++ Y K GD+ A+ + + KD W+A+I G + ++ P
Sbjct: 229 VERNVV--SFTVM----IDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQ-PN 281
Query: 123 ------------TIRPDEVTYVGVLSACTHNGN 143
++PDE V ++SAC+ GN
Sbjct: 282 EAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGN 314
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VISWT ++SGY+ GQVD+AR+ F MPE++ V WTAM+ GY + R EA LF
Sbjct: 197 MPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
M + I+ + + G+V KA++V ++ KD TW+AMI
Sbjct: 257 DAMPVKAVVACNAMILG------FGQNGEVAKARQVFDQIREKDDGTWSAMI 302
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 33/175 (18%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ +SW ++SGY+ V AR+ F MPER+ V WTAM+ GY++ EA TLF
Sbjct: 73 MPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLF 132
Query: 61 PEMQTSN-------------------------IRPDEFTIVRILTAYMYCKCGDVEKAQR 95
+M N I P + + R YC+ G + +A+
Sbjct: 133 WQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARE 192
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG 142
+ +M R++ +WT MI G + R +EV++ +L T G
Sbjct: 193 LFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGG 247
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 45/188 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K V++ ++ G+ G+V ARQ F Q+ E+D W+AMI Y R EAL LF
Sbjct: 259 MPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLF 318
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
MQ ++ + +++ +L+ MY KC
Sbjct: 319 ALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKC 378
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPTIRP--------DEVTYVGVL 135
GD+ KA+++ + KD W ++I G A + + D VT+VGVL
Sbjct: 379 GDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVL 438
Query: 136 SACTHNGN 143
SAC++ G
Sbjct: 439 SACSYTGK 446
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K ++SW +V+GY + AR F +MPER+ V W +I GY++ EA F
Sbjct: 42 MPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAF 101
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
M P+ + Y + G V +A+ + +M K+ +WT M+ GL
Sbjct: 102 DTM------PERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGL 150
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
I++ ++ Y GQ++ AR+ F +MP++ V W +M+ GY + NR REA LF +M
Sbjct: 17 IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM--- 73
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P+ T+ Y K V +A++ M ++ +WTAM+ G
Sbjct: 74 ---PERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRG 118
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 17/153 (11%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ DV + +++ Y+ G + ARQ F + +D V+W ++I GY + EAL +F E
Sbjct: 362 DSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHE 421
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGL 115
M +S + D T V +L+A Y G V++ + M K + + ++G
Sbjct: 422 MCSSGMATDGVTFVGVLSACSY--TGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGR 479
Query: 116 A--ISDPFPTIR-----PDEVTYVGVLSAC-TH 140
A ++D I+ D + + +L AC TH
Sbjct: 480 AGLVNDAMDLIQKMPVEADAIIWGALLGACRTH 512
>gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 548
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 20/150 (13%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66
+SWT I+ Y+N G++ AR+ F ++P R+ V W AM+DGY++ A LF EM
Sbjct: 175 VSWTAIIIVYVNSGEIVAARELFDRIPHRNLVHWNAMVDGYVKCGDLESAGRLFEEM--- 231
Query: 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP---- 122
P + Y K G++E A+ + K+ +D F W+AMI G A + +P
Sbjct: 232 ---PRKTAAAHTSLIGGYAKAGNMEGAKLLFDKLQDRDVFAWSAMISGYA-QNGYPGEAF 287
Query: 123 ---------TIRPDEVTYVGVLSACTHNGN 143
I PDE V +++AC+ GN
Sbjct: 288 RIFNEFHKQDICPDEPVIVALMAACSQLGN 317
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K + T ++ GY G ++ A+ F ++ +RD W+AMI GY + EA +F
Sbjct: 231 MPRKTAAAHTSLIGGYAKAGNMEGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIF 290
Query: 61 PEMQTSNIRPDEFTIVRILTA----------------------------------YMYCK 86
E +I PDE IV ++ A M K
Sbjct: 291 NEFHKQDICPDEPVIVALMAACSQLGNIMLARWIEGYIGSYSIDINNAHVLAGLINMNAK 350
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG++E+A + M +D F++ +M+ G + + PD + V
Sbjct: 351 CGNMERATVLFESMPVRDVFSYCSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVV 410
Query: 135 LSACTHNG 142
L+AC H G
Sbjct: 411 LTACNHAG 418
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 12 IVSGYINR----GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+++G IN G ++ A F MP RD + +M+ G+ +A+ LF M
Sbjct: 340 VLAGLINMNAKCGNMERATVLFESMPVRDVFSYCSMMQGHCLHGSANKAVELFSRMLLEG 399
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ PD +LTA + G VE+A++ M
Sbjct: 400 LSPDNAVFTVVLTACNH--AGLVEEAKKYFGMM 430
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 79/173 (45%), Gaps = 45/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G++ AR+ F +M +RD V W +MI GY ++ +EA+ LF EM+ PD
Sbjct: 169 LITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPD 228
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T+V +L A MY KCGD+ A+RV
Sbjct: 229 EMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFD 288
Query: 99 KMLRKDKFTWTAMIVGLAISDP-------FPTIR-----PDEVTYVGVLSACT 139
M KD TW A+I G A + F +R PD VT + VLSAC+
Sbjct: 289 SMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACS 341
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 47/180 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++ Y G + AR+ F MP +D V W A+I GY + EA+ LF M+ +
Sbjct: 268 SALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPH 327
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T++ +L+A MY KCG ++ A RV
Sbjct: 328 PDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRV 387
Query: 97 LRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M K++ +W AMI LA +S T++P+++T++GVLSAC H G
Sbjct: 388 FESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAG 447
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + ++ Y G +D A + F MP ++ V W AMI + +EAL+LF M
Sbjct: 364 DVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMS 423
Query: 65 TSN--IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
N ++P++ T + +L+A ++ G V++ +++ M
Sbjct: 424 KDNGTVQPNDITFIGVLSACVH--AGLVDEGRQLFESM 459
>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
Length = 605
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 82/190 (43%), Gaps = 53/190 (27%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYF-AQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M KD +SW ++ GY G VD AR F MP++D V W+ +I Y + REA+ L
Sbjct: 324 MPCKDSVSWNSLIQGYAQLGYVDDARVMFDTMMPKKDVVSWSCIIAAYAQSGHCREAINL 383
Query: 60 FPEMQTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
F M ++ P+E IV L A MY K
Sbjct: 384 FQRM---DVEPNEMVIVSTLAACSGAKDLALGKAIHARILSPDLRKSVFVGTALLNMYAK 440
Query: 87 CGDVEKAQRVLRKMLRKD-----KFTWTAMIVGLAISDP-----------FPTIRPDEVT 130
CG +++A+ V +M KD TW++++ G A I+PD VT
Sbjct: 441 CGAIKQARAVFDRMPHKDVVARDTVTWSSLVAGYAHHSHADAILLYRDMHLEGIQPDSVT 500
Query: 131 YVGVLSACTH 140
YV +L++C+H
Sbjct: 501 YVSILNSCSH 510
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 44/187 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMP--------------------------- 33
M DV+ T +VS GQ+D A+ F QMP
Sbjct: 202 MPAHDVVVSTAMVSANAQAGQIDEAKYLFDQMPIHSTESWNALMNTGLSSAELCKSLFDE 261
Query: 34 --ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91
RD W +I + + ++EA+ +F M N T+ L + G++
Sbjct: 262 NPARDVFSWNTLISVHAQTGDYQEAVQIFNRMPVRN------TVSYNLVIAANAEAGNLW 315
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA----ISDP---FPTIRP--DEVTYVGVLSACTHNG 142
+A R+ +M KD +W ++I G A + D F T+ P D V++ +++A +G
Sbjct: 316 QAWRIFDEMPCKDSVSWNSLIQGYAQLGYVDDARVMFDTMMPKKDVVSWSCIIAAYAQSG 375
Query: 143 NETFVIN 149
+ IN
Sbjct: 376 HCREAIN 382
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
SWT IVS + GQ+ A++YF + P + V + MI GY +A ++ M + N
Sbjct: 85 SWTIIVSAFAQNGQLSSAKEYFDKAPIKTLVTYNVMITGYGHQKNVHQAQDIYGRMSSWN 144
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+ + + + + A+ + +M +D+ WT +I
Sbjct: 145 ------AVTWNVMLQTFAQNRHLRNARNLFDQMRVRDEVAWTTLI 183
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ +D ++WT ++ Y+ G ++ A +MP D V+ TAM+ + + EA LF
Sbjct: 171 MRVRDEVAWTTLICAYLVNGNLEWASSMLEKMPAHDVVVSTAMVSANAQAGQIDEAKYLF 230
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+M + A M E + + + +D F+W +I
Sbjct: 231 DQMPIHSTES--------WNALMNTGLSSAELCKSLFDENPARDVFSWNTLI 274
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K ++++ +++GY ++ V A+ + +M + V W M+ + + R A LF +M
Sbjct: 112 KTLVTYNVMITGYGHQKNVHQAQDIYGRMSSWNAVTWNVMLQTFAQNRHLRNARNLFDQM 171
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
+ DE ++ AY+ G++E A +L KM D TAM+
Sbjct: 172 RVR----DEVAWTTLICAYLV--NGNLEWASSMLEKMPAHDVVVSTAMV 214
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + + ++W ++ + + AR F QM RD V WT +I YL A ++
Sbjct: 140 MSSWNAVTWNVMLQTFAQNRHLRNARNLFDQMRVRDEVAWTTLICAYLVNGNLEWASSML 199
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-VGLAISD 119
+M P +V + G +++A+ + +M +W A++ GL+ ++
Sbjct: 200 EKM------PAHDVVVSTAMVSANAQAGQIDEAKYLFDQMPIHSTESWNALMNTGLSSAE 253
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 59/201 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT +++GY + + AR+ F +MPE++ V W A+I GY++ R A +F
Sbjct: 232 MGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMF 291
Query: 61 PEMQ-------------TSNIRPDEFTIVRILTAY------------------------- 82
EM + N++PDEF +V +++A
Sbjct: 292 DEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHR 351
Query: 83 ---------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT---------- 123
M KCG +++A ++ +M ++D ++ +M+ GL+I P
Sbjct: 352 AHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLN 411
Query: 124 --IRPDEVTYVGVLSACTHNG 142
+ PD+V + +L+AC+ G
Sbjct: 412 EGLTPDDVAFTVILTACSRAG 432
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T ++ Y G++ AR+ F +M ER+ V WTAMI GY + EA LF EM
Sbjct: 205 DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMP 264
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--KDKFTWTAMIVGLAISDPFP 122
N + I++ Y+ KCGD+ A+++ +M +D W+A+I G
Sbjct: 265 EKN----AVSWNAIISGYV--KCGDLRSARKMFDEMPHRNRDVVAWSALISG-------- 310
Query: 123 TIRPDEVTYVGVLSACTHNGN 143
++PDE V ++SAC+ G+
Sbjct: 311 NVKPDEFIMVSLMSACSQMGS 331
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 6/120 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV----LWTAMIDGYLRVNRFREA 56
+ + + W + GY V + F +M D V + ++I +V +E
Sbjct: 131 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 190
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ + D F + ++ +Y KCG++ A++V +M ++ +WTAMI G A
Sbjct: 191 VAFHGSAVRCGVGGDVFVMTSLID--LYGKCGEILCARKVFDEMGERNVVSWTAMIAGYA 248
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 45/172 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y GQV +AR +F QM + ++W AMI GY + EA+ LF EM + NIR D T+
Sbjct: 315 YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITV 374
Query: 76 VRILTAY---------------------------------MYCKCGDVEKAQRVLRKMLR 102
+ A M+ KCG V+ A+ V + L
Sbjct: 375 RSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLD 434
Query: 103 KDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
KD W+AMIVG + D F ++ P++VT+VG+L+AC H+G
Sbjct: 435 KDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSG 486
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 45/175 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T V+ N G++ AR+ F + PE LW A+I GY N F +A+ ++ MQ S +
Sbjct: 107 TKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN 166
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PD FT+ +L A +Y KCG VE+A+ V
Sbjct: 167 PDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIV 226
Query: 97 LRKMLRKDKFTWTAMIVGLAISD-PFPTIR-----------PDEVTYVGVLSACT 139
+ ++ +WT+MI G + P +R PD + V VL A T
Sbjct: 227 FEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYT 281
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 45/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV +V+ Y G+V+ AR F + +R+ V WT+MI GY + EAL +F +M
Sbjct: 202 SDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQM 261
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ N++PD +V +L AY MY KCG V
Sbjct: 262 RQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQV 321
Query: 91 EKAQRVLRKMLRKDKFTWTAMI------------VGLAISDPFPTIRPDEVTYVGVLSAC 138
A+ +M + W AMI VGL IR D +T + AC
Sbjct: 322 MVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILAC 381
Query: 139 THNGN 143
G+
Sbjct: 382 AQVGS 386
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T ++ + G VD+AR+ F + ++D V+W+AMI GY R ++A+ LF M+
Sbjct: 405 DVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMK 464
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
+ + P++ T V +LTA + G VE+ + M
Sbjct: 465 QAGVCPNDVTFVGLLTACNH--SGLVEEGWELFHSM 498
>gi|225425734|ref|XP_002271313.1| PREDICTED: pentatricopeptide repeat-containing protein At1g26900,
mitochondrial-like [Vitis vinifera]
Length = 597
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y N G +D+ + F Q+P++D VLW +IDGY + + +E+L+L M+ ++
Sbjct: 268 TALIDMYANAGFIDLGHKIFYQVPKKDVVLWNCLIDGYAKSDLLQESLSLLQLMKREQVK 327
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
P+ T+V +L+A MYCKCG +EKA V
Sbjct: 328 PNSSTLVGLLSACAAAGASSVGLCISNYVEEEQIALDAVLGTALVDMYCKCGFLEKAIDV 387
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSACTHNG 142
+M KD +WTAMI G + RP+EVT++ VL+AC+H G
Sbjct: 388 FERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRMEVEGYRPNEVTFLAVLNACSHGG 445
Score = 49.7 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G ++ A F +M +D WTAMI GY + + A+ +F M+
Sbjct: 364 DAVLGTALVDMYCKCGFLEKAIDVFERMEIKDVKSWTAMISGYGVHGQAKNAIMIFHRME 423
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT 107
RP+E T + +L A + G V + L KM+R+ F+
Sbjct: 424 VEGYRPNEVTFLAVLNACSH--GGMVVEGISFLEKMVREYGFS 464
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NKD+++W ++S Y GQ+D A + F +M ERD V W ++I G++ + +AL F
Sbjct: 345 MVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSF 404
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M +PD+ + L++ MY KC
Sbjct: 405 ALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKC 464
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G + +A V + D +W ++I G AI+ + PDEVT++G+L
Sbjct: 465 GRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGIL 524
Query: 136 SACTHNG 142
SAC H G
Sbjct: 525 SACNHAG 531
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 64/116 (55%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++SW ++S Y+ R ++D A + F +MPERD V WT MI+GY+R+ + EA L
Sbjct: 221 MPSRNIVSWNAMISAYVQRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELL 280
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
EM NI I Y +C V++A+R ++ D W AMI G A
Sbjct: 281 NEMPYRNIGAQTAMISG------YIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYA 330
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ +++ ++S Y G+++ AR F +MP R+ V W M+ GYL +F EA LF
Sbjct: 1 MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM---LRKDKFTWTAMIVG 114
M R D F+ ++T Y + G+VEKA+ + + RK W AMI G
Sbjct: 61 VIMP----RRDLFSWTLMITC--YTRNGEVEKARELFDSLPCSYRKGVACWNAMISG 111
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 18/151 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ + T ++SGYI +VD AR++F ++ D V W AMI GY R EAL L
Sbjct: 283 MPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLS 342
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-- 118
M + D T +++ Y + G +++A ++ +M +D +W ++I G ++
Sbjct: 343 KRM----VNKDMVTWNTMISC--YAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQ 396
Query: 119 --DPFPTI--------RPDEVTYVGVLSACT 139
D + +PD++++ LS+C
Sbjct: 397 NLDALKSFALMGHEGKKPDQLSFACGLSSCA 427
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 64/112 (57%), Gaps = 6/112 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K++ISW +++GY ++ + ++F +M ERD V W M+DG+++V A F
Sbjct: 128 MPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFF 187
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
E Q +P+ + V +L+ + + G++ +++R+ +M ++ +W AMI
Sbjct: 188 QETQ----KPNVVSWVTMLSG--FARNGNILESRRLFDQMPSRNIVSWNAMI 233
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K V W ++SGY+ +G+V+ A++ F +MP ++ + W +M+ GY + + R L F EM
Sbjct: 100 KGVACWNAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEM 159
Query: 64 QTSNIRPDEFTIVRI-LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
DE +V L + + GD++ A + ++ + + +W M+ G A
Sbjct: 160 -------DERDVVSWNLMVDGFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFA 206
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 33/141 (23%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +VS Y ++ +A+Q F ++ ER+ V W+AMI GY RV EAL++F EMQ I
Sbjct: 271 SSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGMVNEALSMFREMQEVGIE 330
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PDE ++V +++A MY KCG +EKA+ +
Sbjct: 331 PDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNMYAKCGCIEKAKEI 390
Query: 97 LRKMLRKDKFTWTAMIVGLAI 117
M KD W++MIVGLAI
Sbjct: 391 FDYMPVKDSKAWSSMIVGLAI 411
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 49/171 (28%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDG--YLRVNRFREALTLFPEMQTSNI-RPDEFTIV 76
G ++ AR+ FAQ+P + +I G Y + N RE L+ M T R + FT+
Sbjct: 178 GDLNYARKIFAQIPNPGIFPYNTIIRGCSYAK-NPSREPYFLYKSMVTRGFPRANTFTMA 236
Query: 77 RILTA---------------------------------YMYCKCGDVEKAQRVLRKMLRK 103
+L A +Y KC ++ A++V ++ +
Sbjct: 237 FVLKACASIMAFEEGRQIHARILRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITER 296
Query: 104 DKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVGVLSACTHNG 142
+ W+AMI G A +++ R PDEV+ VGV+SAC G
Sbjct: 297 NLVCWSAMISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAG 347
>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
Length = 938
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W IV+GY+ G+VD A + F MPE++ V W +I G ++ + F EA+ +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
MQ+ + D T++ I +A M+ +
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGV 134
CGD E A + + +D WTA I + + D ++PD V +VG
Sbjct: 518 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 577
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 578 LTACSHGG 585
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ +V Y G++D AR+ F +M ER+ V WT+MI GY R + ++A+ LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96
+ + P+ T+V +++A K D+E ++V
Sbjct: 227 VRDEEVTPNSVTMVCVISA--CAKLEDLETGEKV 258
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 46/147 (31%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA----------------- 81
++ ++I GY EA+ LF M S I PD++T L+A
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 82 ----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------ 119
+ Y +CG+++ A++V +M ++ +WT+MI G A D
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 120 --PFPTIR-----PDEVTYVGVLSACT 139
F +R P+ VT V V+SAC
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACA 247
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 33/136 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y+ +D+A++ F + + L AM Y+R REAL +F M S +RPD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+++ +++ MY KC + A R+
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Query: 99 KMLRKDKFTWTAMIVG 114
+M K TW +++ G
Sbjct: 397 RMSNKTVVTWNSIVAG 412
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V + G + A F + RD WTA I A+ LF +M
Sbjct: 504 DVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMI 563
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMI-----VG 114
++PD V LTA + G V++ + + ML+ + + M+ G
Sbjct: 564 EQGLKPDGVAFVGALTACSH--GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAG 621
Query: 115 L-----AISDPFPTIRPDEVTYVGVLSACTHNGN 143
L + + P + P++V + +L+AC GN
Sbjct: 622 LLEEAVQLIEDMP-MEPNDVIWNSLLAACRVQGN 654
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A+ID Y++ +R A +F M + T I+ Y+ + G+V+ A M
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTV----VTWNSIVAGYV--ENGEVDAAWETFETMP 430
Query: 102 RKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
K+ +W +I GL F + D VT + + SAC H G
Sbjct: 431 EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
Length = 596
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT +++GY +D A Q F MP +D + WTA+I G+ + AL LF
Sbjct: 231 MTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELF 290
Query: 61 PEMQTSNIRPDEFTIVRILTAY------------------------------------MY 84
M + P F +V L A MY
Sbjct: 291 ERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMY 350
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYV 132
KCGD+ A V +ML +D +W +M+ G LA+ + ++P VT++
Sbjct: 351 SKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFL 410
Query: 133 GVLSACTHNG 142
VL+AC+H G
Sbjct: 411 AVLTACSHAG 420
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A F +M ERD + W +M+ G+ + +++L +F M ++P
Sbjct: 346 LIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPT 405
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +LTA + G V +R+L M
Sbjct: 406 YVTFLAVLTACSH--AGLVSDGRRILESM 432
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNR------FRE 55
+++V+S+ ++S G+ A + FAQ+ +R ID + V+ R+
Sbjct: 126 SRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRD 185
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYM---YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
A L + E T+ I+ M Y K G VE A+ V +M +D +WT+MI
Sbjct: 186 ARHLRELHGAVVVSGMEVTV--IMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMI 243
Query: 113 VG----------LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVI 148
G + + D P D + + ++S NG E +
Sbjct: 244 AGYCRASMLDDAVQVFDMMPA--QDAIAWTALISGHEQNGEEEIAL 287
>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
Length = 596
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT +++GY +D A Q F MP +D + WTA+I G+ + AL LF
Sbjct: 231 MTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELF 290
Query: 61 PEMQTSNIRPDEFTIVRILTAY------------------------------------MY 84
M + P F +V L A MY
Sbjct: 291 ERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMY 350
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYV 132
KCGD+ A V +ML +D +W +M+ G LA+ + ++P VT++
Sbjct: 351 SKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFL 410
Query: 133 GVLSACTHNG 142
VL+AC+H G
Sbjct: 411 AVLTACSHAG 420
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A F +M ERD + W +M+ G+ + +++L +F M ++P
Sbjct: 346 LIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPT 405
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +LTA + G V +R+L M
Sbjct: 406 YVTFLAVLTACSH--AGLVSDGRRILESM 432
Score = 37.7 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNR------FRE 55
+++V+S+ ++S G+ A + FAQ+ +R ID + V+ R+
Sbjct: 126 SRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRD 185
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYM---YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
A L + E T+ I+ M Y K G VE A+ + +M +D +WT+MI
Sbjct: 186 ARHLRELHGAVVVSGMEVTV--IMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMI 243
Query: 113 VG----------LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVI 148
G + + D P D + + ++S NG E +
Sbjct: 244 AGYCRASMLDDAVQVFDMMPA--QDAIAWTALISGHEQNGEEEIAL 287
>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
Length = 596
Score = 86.7 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/190 (28%), Positives = 81/190 (42%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D +SWT +++GY +D A Q F MP +D + WTA+I G+ + AL LF
Sbjct: 231 MTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELF 290
Query: 61 PEMQTSNIRPDEFTIVRILTAY------------------------------------MY 84
M + P F +V L A MY
Sbjct: 291 ERMTGEGVVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMY 350
Query: 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPF--PTIRPDEVTYV 132
KCGD+ A V +ML +D +W +M+ G LA+ + ++P VT++
Sbjct: 351 SKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFL 410
Query: 133 GVLSACTHNG 142
VL+AC+H G
Sbjct: 411 AVLTACSHAG 420
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A F +M ERD + W +M+ G+ + +++L +F M ++P
Sbjct: 346 LIDMYSKCGDMVAAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPT 405
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
T + +LTA + G V +R+L M
Sbjct: 406 YVTFLAVLTACSH--AGLVSDGRRILESM 432
Score = 38.9 bits (89), Expect = 0.69, Method: Composition-based stats.
Identities = 40/166 (24%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNR------FRE 55
+++V+S+ ++S G+ A + FAQ+ +R ID + V+ R+
Sbjct: 126 SRNVVSYNTVISSLARHGRESEALRVFAQLARDRGLGQQQVAIDRFTVVSAASACAGLRD 185
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYM---YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
A L + E T+ I+ M Y K G VE A+ V +M +D +WT+MI
Sbjct: 186 ARHLRELHGAVVVSGMEVTV--IMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMI 243
Query: 113 VG----------LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVI 148
G + + D P D + + ++S NG E +
Sbjct: 244 AGYCRASMLDDAVQVFDMMPA--QDAIAWTALISGHEQNGEEEIAL 287
>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Cucumis sativus]
Length = 565
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+S+T ++ GY G + AR F + PERD + W+A+I GY + + EA+ F
Sbjct: 250 MPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTF 309
Query: 61 PEMQTSNIRPDEFTIVRILTAY----------------------------------MYCK 86
EM + N++PD+F + ++ A M K
Sbjct: 310 LEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGAHVTAALIDMNAK 369
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP------------FPTIRPDEVTYVGV 134
CG++E+A + KM ++D ++ +++ GL+I + PD+V + +
Sbjct: 370 CGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVI 429
Query: 135 LSACTHNG 142
L+AC+ G
Sbjct: 430 LTACSRAG 437
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++ GY + G + A++ F MPER+ W A+I GY+++ + A F
Sbjct: 188 MSERNVVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAF 247
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA---- 116
EM N+ + ++ Y K GD+ A+ + +K +D W+A+I G
Sbjct: 248 DEMPEKNV----VSFTTMIDG--YAKAGDMLSARNLFQKAPERDIIAWSALISGYTQNGQ 301
Query: 117 --------ISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ ++PD+ ++ AC+ GN
Sbjct: 302 PNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGN 336
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++D+ T +V+ Y G +D AR+ F M ER+ V WTAMI GY + EA LF
Sbjct: 159 DEDIYVTTSLVNLYGKGGLIDCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAKRLFDL 218
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122
M N+ + I+ YM K GDV+ A++ +M K+ ++T MI G A +
Sbjct: 219 MPERNVA----SWNAIIGGYM--KMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDML 272
Query: 123 TIRP--------DEVTYVGVLSACTHNGN 143
+ R D + + ++S T NG
Sbjct: 273 SARNLFQKAPERDIIAWSALISGYTQNGQ 301
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRP 70
+V GY G + AR+ F +M +R V W MI GY + ++EA+ +F M Q ++ P
Sbjct: 205 MVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLP 264
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
+ T+V +L A MY KCG +EKA +V
Sbjct: 265 NRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVF 324
Query: 98 RKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVLSACTHNG 142
++ + + TW A+I GLA+ +D F I P +VTY+ +LSAC+H G
Sbjct: 325 ERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAG 381
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 2 KNK---DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT 58
KNK D + + +V Y G ++ A Q F ++P+ + + W A+I G + +
Sbjct: 294 KNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFN 353
Query: 59 LFPEMQTSNIRPDEFTIVRILTA 81
M+ I P + T + IL+A
Sbjct: 354 YLSRMEKCGISPSDVTYIAILSA 376
>gi|224122234|ref|XP_002318784.1| predicted protein [Populus trichocarpa]
gi|222859457|gb|EEE97004.1| predicted protein [Populus trichocarpa]
Length = 511
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D++ I+ + +A+ F +M RD V W MI GY+R RF EAL LF M
Sbjct: 75 DLVELNLIIDKLMRTENYRVAKMVFNKMRARDVVTWNTMIGGYVRKARFEEALRLFRFMN 134
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
SN+ PD++T ++ MY KCG ++
Sbjct: 135 KSNVEPDKYTFASVINGCAKLGALKHAQWVHELLIEKRIELNFILSSALIDMYSKCGKIQ 194
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSACT 139
A+ + + R + W AMI GLA+ + PD +T++G+L+AC+
Sbjct: 195 TAKEIFDGVQRNNVCIWNAMISGLAVHGLALDAIKVFTKMEVENVLPDAITFLGILTACS 254
Query: 140 HNG 142
H G
Sbjct: 255 HCG 257
>gi|404357933|gb|AFR63959.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
gi|404357997|gb|AFR63991.1| AT3G62890-like protein, partial [Arabidopsis lyrata subsp. petraea]
Length = 187
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 39/154 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ +W +V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ +++EAL LF E
Sbjct: 29 SKDLPAWNSVVNAYAKAGLIDYARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 88
Query: 63 MQ--TSN---IRPDEFTIVRILTAY---------------------------------MY 84
MQ SN + P+EFT+ +L+A MY
Sbjct: 89 MQLPKSNEAFVSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYRVEIDIVLGTTLIDMY 148
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAI 117
KCG +E+A+RV + +KD ++AMI LA+
Sbjct: 149 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAM 182
>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
Length = 907
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ S +V+ Y G ++ + F +M RD V W A++ G+ + +AL LF EM+
Sbjct: 382 DIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMR 441
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ RPD T+V +L A MY KCGD+
Sbjct: 442 KARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLG 501
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGVLSACT 139
AQ+ +M ++D +W+++I G SD T I+P+ V Y+ +LSAC+
Sbjct: 502 SAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561
Query: 140 HNG 142
HNG
Sbjct: 562 HNG 564
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 45/186 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
DV +++ Y G+V+ A+ F M RD + W +++ GY ++ RE L L
Sbjct: 178 GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIR 237
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M+T I PD+ T +++A MY KCG+
Sbjct: 238 MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGN 297
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSA 137
V A R+ M+ KD +WTAMI GL +D + P T VL+A
Sbjct: 298 VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAA 357
Query: 138 CTHNGN 143
C G+
Sbjct: 358 CAELGS 363
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 52/194 (26%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y+ G V+ A + F M +D + WTAMI G ++ + A+T+F M S +
Sbjct: 286 TSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVM 345
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
P TI +L A MY KCG +E++ V
Sbjct: 346 PSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSV 405
Query: 97 LRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSACT----- 139
+M R+D +W A++ G A + RPD +T V +L AC
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGAL 465
Query: 140 HNGN--ETFVINSC 151
H G FV SC
Sbjct: 466 HQGKWIHNFVTKSC 479
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 42/170 (24%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +++ Y G AR+ F M +R+ V WT MI Y R A +++ M+ I+
Sbjct: 87 TSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQ 146
Query: 70 PDEFTIVRILTAYM------------------------------YCKCGDVEKAQRVLRK 99
P T++ +L+ + YCKCG VE AQ +
Sbjct: 147 PSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFEL 206
Query: 100 MLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVLSA 137
M +D +W +++ G A I I PD+ T+ ++SA
Sbjct: 207 MDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSA 256
>gi|302789766|ref|XP_002976651.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
gi|300155689|gb|EFJ22320.1| hypothetical protein SELMODRAFT_105614 [Selaginella moellendorffii]
Length = 341
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 78/185 (42%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
D++ T ++ Y G VD AR+ F +M RD V WTAMI Y R+A+ LF
Sbjct: 42 GSDIVVATGLIGMYSRCGSVDRAREVFDRMSYRDTVAWTAMIAAYAHTGHPRQAMELFKA 101
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M T ++RPD FT ++ A MY KCG
Sbjct: 102 MDTWDVRPDGFTYASVINACTGMGALADGMVVHREIVRDGFDGDPVVQNSLVDMYSKCGS 161
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVLSA 137
+ +A+ V M+++D TWTA+ G A ++ DE+ + VL A
Sbjct: 162 LGEARAVFDDMVKRDVATWTALFSGYAKHGFNNEALETFWCMALESMALDEIIFTTVLQA 221
Query: 138 CTHNG 142
C+H G
Sbjct: 222 CSHLG 226
>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
Length = 622
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW +++G+I + ARQ F +MP+R+ + WT M++GYL+ + AL LF
Sbjct: 254 MPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLF 313
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
M I+P++ T + L A +Y KC
Sbjct: 314 NCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKC 373
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV-------GLAISDPFPTI-----RPDEVTYVGVL 135
G++ A+ V + KD +W +I G+ + + +P++ TYVG+L
Sbjct: 374 GEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLL 433
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 434 SACSHAG 440
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 18/152 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT ++SG G VD A F MPER+ V W AMI GY R +R EAL LF
Sbjct: 192 MPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLF 251
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG------ 114
+M ++ I T ++ K D++ A+++ +M +++ TWT M+ G
Sbjct: 252 TKMPIRDVASWNIMI----TGFIQNK--DLKSARQLFDEMPKRNVITWTTMMNGYLQCMQ 305
Query: 115 ------LAISDPFPTIRPDEVTYVGVLSACTH 140
L I+P++VT++G L AC++
Sbjct: 306 SEMALKLFNCMLVQGIQPNQVTFLGSLDACSN 337
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALT 58
M ++DV+SWT +V+ Y RG + AR F + P+ R+ V WTA++ GY R R EA
Sbjct: 67 MPDRDVVSWTAMVAAYARRGMLQEARVLFDR-PDARRNVVTWTALLSGYARARRVDEAEA 125
Query: 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
LF M N+ + +L A Y G VE A + +M +D +W ++ GL S
Sbjct: 126 LFEGMAERNV----VSWNTMLEA--YTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRS 179
Query: 119 DPFPTIRP--------DEVTYVGVLSACTHNGN 143
R D +++ ++S NG+
Sbjct: 180 GSLERARKMFERMPVRDVMSWTTMISGLARNGS 212
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G+V AR+ F MP+RD V WTAM+ Y R +EA LF RPD V
Sbjct: 55 GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFD-------RPDARRNVVTW 107
Query: 80 TAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
TA + Y + V++A+ + M ++ +W M+
Sbjct: 108 TALLSGYARARRVDEAEALFEGMAERNVVSWNTML 142
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G++ +AR F E+D + W +I Y EA+ L+ MQ + +P++ T
Sbjct: 370 YAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATY 429
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVGLA--ISDP-----F 121
V +L+A + G V++ ++ M +R + +T + A + D +
Sbjct: 430 VGLLSACSH--AGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISW 487
Query: 122 PTIRPDEVT-YVGVLSACTHNGNETF 146
I+P T + +L C +GNE+
Sbjct: 488 FKIKPTSSTVWSALLGGCNSHGNESI 513
>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
Length = 664
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KDVISWT IV Y + A + FA P +D V WTAM+ GY + +AL F
Sbjct: 219 MLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAF 278
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M + + DE ++ ++A MY KC
Sbjct: 279 EQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKC 338
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPF--PTIRPDEVTYVGV 134
G +++A++V M K+ +T+++MIVGLA +D + P+ VT++GV
Sbjct: 339 GLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEPNHVTFIGV 398
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 399 LTACSHAG 406
>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT +V G G+VD AR+ F +MPER+ V W AM+ GY + R EA LF
Sbjct: 126 MPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDEAFDLF 185
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M N+ I + + G++ A++V +M K+ +WT MI G
Sbjct: 186 ERMPERNLSSWNTMITG------FIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGE 239
Query: 121 FPT-------------IRPDEVTYVGVLSACT 139
+ RP+E T+V VL AC+
Sbjct: 240 SESALKVFVEMIKDGGARPNEGTFVNVLGACS 271
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ SW +++G+I G++ AR+ F +MPE++ V WT MI GY++ AL +F
Sbjct: 188 MPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGESESALKVF 247
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
EM + RP+E T V +L A MY K
Sbjct: 248 VEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVASALLNMYSK 307
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIV-------GLAISDPFPTI-----RPDEVTYV 132
CG++ A+++ ++ ++D W MI G+ + F + +P++V+YV
Sbjct: 308 CGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYV 367
Query: 133 GVLSACTHNG 142
+LSAC+H G
Sbjct: 368 ELLSACSHAG 377
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KDV++WT ++SGY+ +++ A + F MP ++ V W MIDGY + +A+ +F M
Sbjct: 36 KDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERM 95
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
N+ I ++ +CG VE+A+R +M ++D +WT M++GLA S
Sbjct: 96 HERNMVSWNAVIAALV------QCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDE 149
Query: 124 IRP 126
R
Sbjct: 150 ARK 152
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+SW ++ GY +VD A + F +M ER+ V W A+I ++ R EA F
Sbjct: 64 MPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRRF 123
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
EM P I + G V++A++V +M ++ +W AM+ G A
Sbjct: 124 DEM------PKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYA 173
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 16 YINRGQVDIARQYFAQ--MPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y G++ IAR+ F + +RD VLW MI Y EA+ LF +MQ +P++
Sbjct: 305 YSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDV 364
Query: 74 TIVRILTAYMYCKCGD-----VEKAQRVLRKMLRKDKFTWTAMIVGLA--ISDPFPTI-- 124
+ V +L+A + D ++ R LR+D + G A + + + I
Sbjct: 365 SYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAYDFIKQ 424
Query: 125 ---RPDEVTYVGVLSACTHNGN 143
+ + G+L+ C +G+
Sbjct: 425 LGTKASSSIWGGLLAGCNAHGD 446
>gi|297819826|ref|XP_002877796.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323634|gb|EFH54055.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 530
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D++SW I++G + G V A + F +MPE++ + W MI YL N ++ LF EM
Sbjct: 182 RDIVSWNSIIAGVVRNGDVLYAHKLFDEMPEKNMISWNIMISAYLGANNPGVSIFLFREM 241
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + +E T+V +L A MY KC +V
Sbjct: 242 VGAGFQGNENTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEV 301
Query: 91 EKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGVLSAC 138
+ A+R+ + ++K TW MI+ GL + + +RPDEVT+VGVL C
Sbjct: 302 DLARRIFDSLSVRNKVTWNVMILAHCLHGRPEDGLELFEAMINGLLRPDEVTFVGVLCGC 361
Query: 139 THNG 142
G
Sbjct: 362 ARAG 365
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N V+ T ++ Y +VD+AR+ F + R+ V W MI + R + L LF
Sbjct: 282 NSSVVIDTALIDMYGKCKEVDLARRIFDSLSVRNKVTWNVMILAHCLHGRPEDGLELFEA 341
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCG 88
M +RPDE T V +L C C
Sbjct: 342 MINGLLRPDEVTFVGVL-----CGCA 362
>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 75/154 (48%), Gaps = 18/154 (11%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV +WT ++S + G + ARQ F +MP R+ W AMIDGY R+ A LF
Sbjct: 171 MSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLF 230
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD- 119
+M P+ I Y + ++K+ V K+ +K+ F W ++I GLA+
Sbjct: 231 SQM------PNRDIISWTTMIACYSQNKHLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGY 284
Query: 120 -----------PFPTIRPDEVTYVGVLSACTHNG 142
I+P+ VT++ VL ACTH G
Sbjct: 285 AEEALAMFSRMQREKIKPNGVTFISVLGACTHAG 318
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 86.3 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 85/191 (44%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++SGY G + A F +MPERD W A++ + F EA++LF
Sbjct: 188 MSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFVEAVSLF 247
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M IRP+E T+V +L+A +Y K
Sbjct: 248 RRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSDVFVSNSLVDLYGK 307
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT---------------IRPDEVTY 131
CG++E+A V + +K W +MI A+ I+PD +T+
Sbjct: 308 CGNLEEASSVFKMSSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSHDIKPDHITF 367
Query: 132 VGVLSACTHNG 142
+G+L+ACTH G
Sbjct: 368 IGLLNACTHGG 378
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,409,886,533
Number of Sequences: 23463169
Number of extensions: 88160909
Number of successful extensions: 327519
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 6046
Number of HSP's successfully gapped in prelim test: 3046
Number of HSP's that attempted gapping in prelim test: 250697
Number of HSP's gapped (non-prelim): 53466
length of query: 153
length of database: 8,064,228,071
effective HSP length: 116
effective length of query: 37
effective length of database: 9,637,467,763
effective search space: 356586307231
effective search space used: 356586307231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 71 (32.0 bits)