BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035927
         (153 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
 pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
           Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
           A Resolution
          Length = 346

 Score = 28.9 bits (63), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 27/91 (29%)

Query: 47  YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106
           YL  N F+E L  FPE+ T   +    T V+        K  D+EK              
Sbjct: 225 YLFTNIFKELLVEFPELNTEETK----TFVKT----TLXKAADLEK-------------- 262

Query: 107 TWTAMIVGLAISDPFPTIRP-DEVTYVGVLS 136
            W   I+G    D  P I P D  TY+  ++
Sbjct: 263 DWFRYIIG----DKIPGINPEDXETYISFIA 289


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,600,681
Number of Sequences: 62578
Number of extensions: 167289
Number of successful extensions: 386
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 1
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)