BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035927
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/187 (44%), Positives = 107/187 (57%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MK +DVISWT IV GY+ RG + +AR YF QMP RD + WT MIDGYLR F E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ++ + PDEFT+V +LTA MY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G EKAQ+V M ++DKFTWTAM+VGLA + +I+PD++TY+GVL
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 136 SACTHNG 142
SAC H+G
Sbjct: 477 SACNHSG 483
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 74/200 (37%), Gaps = 76/200 (38%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G +D+AR F + + D W MI GY R+ + E++ L EM+ + + P T++ +L
Sbjct: 184 GLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVL 243
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
+A Y CG+++ A R+ R M +D
Sbjct: 244 SACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVI 303
Query: 107 TWTAMIVG------LAIS----DPFPT--------------------------------- 123
+WT+++ G L ++ D P
Sbjct: 304 SWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAG 363
Query: 124 IRPDEVTYVGVLSACTHNGN 143
+ PDE T V VL+AC H G+
Sbjct: 364 MIPDEFTMVSVLTACAHLGS 383
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 46/166 (27%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G V A + F ++PE D V+W MI G+ +V+ E + L+ M + PD T +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 80 TAY----------------------------------MYCKCGDVEKAQRVLRKMLRKDK 105
MY CG ++ A+ V + ++D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 106 FTWTAMIVG------------LAISDPFPTIRPDEVTYVGVLSACT 139
F+W MI G L + + P VT + VLSAC+
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ + ++SWT ++SGY G +D++R+ F M E+D VLW AMI G ++ R ++AL LF
Sbjct: 318 LEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALF 377
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQTSN +PDE T++ L+A MY KC
Sbjct: 378 QEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKC 437
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVL 135
G++ +A V + ++ T+TA+I GLA+ T I PDE+T++G+L
Sbjct: 438 GNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLL 497
Query: 136 SACTHNG 142
SAC H G
Sbjct: 498 SACCHGG 504
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G ++ AR+ F + P RD V W +I+GY ++ +A+ ++ M++ ++PD+ T++ ++
Sbjct: 205 GDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLV 264
Query: 80 TAY---------------------------------MYCKCGDVEKAQRVLRKMLRKDKF 106
++ M+ KCGD+ +A+R+ + ++
Sbjct: 265 SSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIV 324
Query: 107 TWTAMIVGLA 116
+WT MI G A
Sbjct: 325 SWTTMISGYA 334
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 48/152 (31%)
Query: 40 WTAMIDGYLRVNRFREALTLFPEMQTSNI---RPDEFTI--------------------- 75
W I G+ +E+ L+ +M RPD FT
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 76 ------------VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL-AISDPFP 122
V + +M+ CGD+E A++V + +D +W +I G I +
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 123 TI-----------RPDEVTYVGVLSACTHNGN 143
I +PD+VT +G++S+C+ G+
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGD 272
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 97/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+V WT +V GY++ G++D AR F + P +D VLWTAM++GY++ NRF EAL LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQT+ IRPD F +V +LT MY KC
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVL 135
G +E A V ++ +D +WT++I GLA++ +R D +T+V VL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387
Query: 136 SACTHNG 142
+AC H G
Sbjct: 388 TACNHGG 394
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 33/132 (25%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFT 74
Y + G+++I + F +MP+RD V W +I Y+ RF +A+ +F M Q SN++ DE T
Sbjct: 91 YASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGT 150
Query: 75 IVRILTAY--------------------------------MYCKCGDVEKAQRVLRKMLR 102
IV L+A M+CKCG ++KA+ V M
Sbjct: 151 IVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCKCGCLDKARAVFDSMRD 210
Query: 103 KDKFTWTAMIVG 114
K+ WT+M+ G
Sbjct: 211 KNVKCWTSMVFG 222
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + T +V Y G ++ A + F ++ ERD WT++I G AL L+ EM+
Sbjct: 313 DKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEME 372
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRK 103
+R D T V +LTA C G V + +++ M +
Sbjct: 373 NVGVRLDAITFVAVLTA---CNHGGFVAEGRKIFHSMTER 409
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K VI+WT ++ GY N +D AR+ F MPER+ V W MI GY + + +E + LF
Sbjct: 202 MTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLF 261
Query: 61 PEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYCK 86
EMQ T+++ PD+ TI+ +L A MY K
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSK 321
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI----RPDEVTYVGVL 135
CG++EKA+R+ +M K +W AMI G A++ D F T+ +PDE+T + V+
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVI 381
Query: 136 SACTHNG 142
+AC H G
Sbjct: 382 TACNHGG 388
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 20/156 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTL 59
M ++ +SWT ++SGYI G++D+A + F QMP +D V++ AM+DG+++ A L
Sbjct: 139 MPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRL 198
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS- 118
F EM + I + YC D++ A+++ M ++ +W MI G +
Sbjct: 199 FDEMTHKTV------ITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNK 252
Query: 119 DPFPTIR------------PDEVTYVGVLSACTHNG 142
P IR PD+VT + VL A + G
Sbjct: 253 QPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTG 288
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ T +V Y G++ AR F +MP R V WTA+I GY+R A LF +M
Sbjct: 112 DMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM- 170
Query: 65 TSNIRPDEFTIVRILTAYM--YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
P +V I A M + K GD+ A+R+ +M K TWT MI G
Sbjct: 171 -----PHVKDVV-IYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHG 216
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV++W ++ G+ G +D A+ F +MP+R+ V W +MI G++R RF++AL +F EMQ
Sbjct: 191 DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQ 250
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+++PD FT+V +L A MYCKCG +E
Sbjct: 251 EKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIE 310
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-------ISDPFPT-----IRPDEVTYVGVLSACT 139
+ V +K W +MI+GLA D F + PD V+++GVL+AC
Sbjct: 311 EGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACA 370
Query: 140 HNG 142
H+G
Sbjct: 371 HSG 373
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE-ALTLFPEMQTSNI 68
T ++ Y G ++ F P++ W +MI G L N F E A+ LF E++ S +
Sbjct: 297 TALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG-LANNGFEERAMDLFSELERSGL 355
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-------WTAMI-----VGL- 115
PD + + +LTA + G+V +A R M K+K+ +T M+ GL
Sbjct: 356 EPDSVSFIGVLTACAH--SGEVHRADEFFRLM--KEKYMIEPSIKHYTLMVNVLGGAGLL 411
Query: 116 ----AISDPFPTIRPDEVTYVGVLSACTHNGN 143
A+ P + D V + +LSAC GN
Sbjct: 412 EEAEALIKNMP-VEEDTVIWSSLLSACRKIGN 442
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM--------PERDYVLWTAMIDGYLRVNR 52
+ +K+ W I+ G+ ++A F M P+R + + ++ Y R+ +
Sbjct: 84 INHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQR--LTYPSVFKAYGRLGQ 141
Query: 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
R+ L + + D F +R +MY CG + +A R+ M+ D W +MI
Sbjct: 142 ARDGRQLHGMVIKEGLEDDSF--IRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMI 199
Query: 113 VGLA 116
+G A
Sbjct: 200 MGFA 203
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M++K+ ++W ++ GY+ GQVD A + F +MPERD + WTAMI+G+++ EAL F
Sbjct: 135 MEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWF 194
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EMQ S ++PD I+ L A +YC+C
Sbjct: 195 REMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRC 254
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G VE A++V M ++ +W ++IVG A + +PD VT+ G L
Sbjct: 255 GCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGAL 314
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 315 TACSHVG 321
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 16/142 (11%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G V+ ARQ F M +R V W ++I G+ E+L F +MQ +PD T
Sbjct: 251 YCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTF 310
Query: 76 VRILTA-------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV-GLAISDPF 121
LTA + KC D + R+ D ++ + L +
Sbjct: 311 TGALTACSHVGLVEEGLRYFQIMKC-DYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSM 369
Query: 122 PTIRPDEVTYVGVLSACTHNGN 143
P ++P+EV +L+AC+++GN
Sbjct: 370 P-MKPNEVVIGSLLAACSNHGN 390
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 46/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++SWT ++ G ++ Q+D A F QMP R+ V WTAMI Y++ R EA LF
Sbjct: 180 MPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLF 239
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
MQ +++P+EFTIV +L A MY KC
Sbjct: 240 RRMQVDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKC 299
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEVTYVGV 134
G ++ A++V M K TW +MI L + ++ PD +T+VGV
Sbjct: 300 GSLQDARKVFDVMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGV 359
Query: 135 LSACTHNGN 143
LSAC + GN
Sbjct: 360 LSACANTGN 368
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISWT++++ Y G ++ A + F +P +D V WTAM+ G+ + + +EAL F
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269
Query: 61 PEMQTSNIRPDEFTIVRILTAY-----------------------------------MYC 85
M+ S IR DE T+ ++A MY
Sbjct: 270 DRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYS 329
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYV 132
KCG+VE+A V M K+ FT+++MI+GLA I+P+ VT+V
Sbjct: 330 KCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFV 389
Query: 133 GVLSACTHNG 142
G L AC+H+G
Sbjct: 390 GALMACSHSG 399
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 67/199 (33%), Gaps = 76/199 (38%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82
AR+ + R+ LWTA+I GY +F EA+ ++ M+ I P FT +L A
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161
Query: 83 -------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY KC ++ A++V +M +D +WT +
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221
Query: 112 IVGLA----------ISDPFPT---------------------------------IRPDE 128
I A + + PT IR DE
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281
Query: 129 VTYVGVLSACTHNGNETFV 147
VT G +SAC G +
Sbjct: 282 VTVAGYISACAQLGASKYA 300
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 102 bits (254), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 58/195 (29%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+KD+ +W +V+ Y G +D AR+ F +MPER+ + W+ +I+GY+ +++EAL LF E
Sbjct: 125 SKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFRE 184
Query: 63 MQTSN-----IRPDEFTIVRILTAY---------------------------------MY 84
MQ +RP+EFT+ +L+A MY
Sbjct: 185 MQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMY 244
Query: 85 CKCGDVEKAQRVLRKM-LRKDKFTWTAMIVGLAI----------------SDPFPTIRPD 127
KCG +E+A+RV + +KD ++AMI LA+ SD I P+
Sbjct: 245 AKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSD---NINPN 301
Query: 128 EVTYVGVLSACTHNG 142
VT+VG+L AC H G
Sbjct: 302 SVTFVGILGACVHRG 316
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SW ++ GY+ G++DIA F +M E++ + WT MI GY++ + +EAL LF EMQ
Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ 239
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
S++ PD ++ L+A MY KCG++E
Sbjct: 240 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEME 299
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGL--------AISDPFPT----IRPDEVTYVGVLSACT 139
+A V + + +K WTA+I G AIS I+P+ +T+ VL+AC+
Sbjct: 300 EALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACS 359
Query: 140 HNG 142
+ G
Sbjct: 360 YTG 362
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A + F + ++ WTA+I GY REA++ F EMQ I+P+
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
T +LTA Y G VE+ + + M R
Sbjct: 348 VITFTAVLTACSY--TGLVEEGKLIFYSMER 376
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 47/186 (25%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N DV + T ++S Y G+++ A + F ++P+R V WTA+ GY R REA+ LF +
Sbjct: 143 NHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202
Query: 63 MQTSNIRPDEFTIVRILTA---------------YM------------------YCKCGD 89
M ++PD + IV++L+A YM Y KCG
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLS 136
+EKA+ V M+ KD TW+ MI G A S+ FP ++PD+ + VG LS
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYA-SNSFPKEGIELFLQMLQENLKPDQFSIVGFLS 321
Query: 137 ACTHNG 142
+C G
Sbjct: 322 SCASLG 327
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 45/178 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V+ Y G+++ AR F M E+D V W+ MI GY + +E + LF +M N++
Sbjct: 251 TTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLK 310
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD+F+IV L++ MY KCG + + V
Sbjct: 311 PDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEV 370
Query: 97 LRKMLRKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSACTHNG 142
++M KD A I GLA + F I PD T++G+L C H G
Sbjct: 371 FKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAG 428
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 45/160 (28%)
Query: 29 FAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA------- 81
F+ + L+ ++I+G++ + F E L LF ++ + FT +L A
Sbjct: 68 FSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSR 127
Query: 82 --------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+Y G + A ++ ++ + TWTA+ G
Sbjct: 128 KLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGY 187
Query: 116 AIS-------DPFPT-----IRPDEVTYVGVLSACTHNGN 143
S D F ++PD V VLSAC H G+
Sbjct: 188 TTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGD 227
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DVISW ++SGY GQ+ A+ F M ++ V WTAMI GY + + EA+ F
Sbjct: 170 MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFF 229
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ + I PDE +++ +L + MY KC
Sbjct: 230 REMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKC 289
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVL 135
G + +A ++ +M KD +W+ MI G A + F ++P+ +T++G+L
Sbjct: 290 GVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLL 349
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 350 SACSHVG 356
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A Q F QM +D + W+ MI GY A+ F EMQ + ++P+
Sbjct: 282 LIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPN 341
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLR--KMLRKD-----KFTWTAMIV----------- 113
T + +L+A C V Q LR M+R+D K ++
Sbjct: 342 GITFLGLLSA-----CSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLER 396
Query: 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ I+ P ++PD + +LS+C GN
Sbjct: 397 AVEITKTMP-MKPDSKIWGSLLSSCRTPGN 425
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 33 PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK 92
P V A+ID Y++ + +A +F EM ++ + +L+ Y + G ++K
Sbjct: 140 PRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDV----ISWNSLLSGY--ARLGQMKK 193
Query: 93 AQRVLRKMLRKDKFTWTAMIVG-------LAISDPF-----PTIRPDEVTYVGVLSACTH 140
A+ + ML K +WTAMI G + D F I PDE++ + VL +C
Sbjct: 194 AKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQ 253
Query: 141 NGN 143
G+
Sbjct: 254 LGS 256
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 45/194 (23%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++ SW+ ++ GY++ G+++ A+Q F MPE++ V WT +I+G+ + + A++ +
Sbjct: 222 MPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTY 281
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
EM ++P+E+TI +L+A MY KC
Sbjct: 282 FEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKC 341
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVL 135
G+++ A V M KD +WTAMI G A+ F +PDEV ++ VL
Sbjct: 342 GELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVL 401
Query: 136 SACTHNGNETFVIN 149
+AC ++ +N
Sbjct: 402 TACLNSSEVDLGLN 415
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 22/147 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67
+V Y GQ+ A Q F + P+R ++W +I+GY R A TLF M N
Sbjct: 167 LVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERN 226
Query: 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT---- 123
T+++ Y G++ +A+++ M K+ +WT +I G + + + T
Sbjct: 227 -SGSWSTLIK-----GYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAIST 280
Query: 124 --------IRPDEVTYVGVLSACTHNG 142
++P+E T VLSAC+ +G
Sbjct: 281 YFEMLEKGLKPNEYTIAAVLSACSKSG 307
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 49/191 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD ++W +++G + ++D AR+ F + E+D V W AMI GY+ +EAL +F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIF 263
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
EM+ + PD TI+ +L+A
Sbjct: 264 KEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALID 323
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR-----------PDEVTY 131
MY KCG +++A V R + +D TW +IVGLA+ +I P+EVT+
Sbjct: 324 MYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEGSIEMFEEMQRLKVWPNEVTF 383
Query: 132 VGVLSACTHNG 142
+GV+ AC+H+G
Sbjct: 384 IGVILACSHSG 394
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 24/143 (16%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
+ N G + IA + F + V W++M GY + + EA+ LF EM D+
Sbjct: 157 HANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYK----DQVAW 212
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPTIR 125
++T + KC +++ A+ + + KD TW AMI G L I F +R
Sbjct: 213 NVMITGCL--KCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGI---FKEMR 267
Query: 126 -----PDEVTYVGVLSACTHNGN 143
PD VT + +LSAC G+
Sbjct: 268 DAGEHPDVVTILSLLSACAVLGD 290
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 33/130 (25%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G + A + F ++P+ D + ++ G + + + ++L+ EM+ + PD +T +L
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A + CGD+ A + + K
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179
Query: 107 TWTAMIVGLA 116
W++M G A
Sbjct: 180 AWSSMTSGYA 189
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 97.4 bits (241), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ KD ++WT ++ GY + AR+ MP++D V W A+I Y + + EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352
Query: 61 PEMQ-TSNIRPDEFTIVRILTA---------------------------------YMYCK 86
E+Q N++ ++ T+V L+A +MY K
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGV 134
CGD+EK++ V + ++D F W+AMI GLA+ D F ++P+ VT+ V
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472
Query: 135 LSACTHNG 142
AC+H G
Sbjct: 473 FCACSHTG 480
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 43/187 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D A + F + E+D V W +MI+G+++ +AL LF +M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224
Query: 65 TSNIRPDEFTIVRILTAY---------------------------------MYCKCGDVE 91
+ +++ T+V +L+A MY KCG +E
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR--------PDEVTYVGVLSACTHNG- 142
A+R+ M KD TWT M+ G AIS+ + R D V + ++SA NG
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344
Query: 143 -NETFVI 148
NE ++
Sbjct: 345 PNEALIV 351
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 48/180 (26%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT-SNIRPDEFTIVRI 78
++ AR+ F ++P+ + W +I Y ++ F +M + S P+++T +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 79 LTA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDK 105
+ A + Y CGD++ A +V + KD
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDV 197
Query: 106 FTWTAMIVGLAISDPFP-------------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152
+W +MI G + P ++ VT VGVLSAC N F C+
Sbjct: 198 VSWNSMINGF-VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 46/173 (26%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y N G V A + F +MPE+D V W ++I+G+ + EAL L+ EM + I+PD FTI
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTI 225
Query: 76 VRILTA---------------YM------------------YCKCGDVEKAQRVLRKMLR 102
V +L+A YM Y +CG VE+A+ + +M+
Sbjct: 226 VSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVD 285
Query: 103 KDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVGVLSACTHNG 142
K+ +WT++IVGLA++ + + P E+T+VG+L AC+H G
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCG 338
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 56/154 (36%), Gaps = 46/154 (29%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTA---------------- 81
+W +I GY + A +L+ EM+ S + PD T ++ A
Sbjct: 87 IWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146
Query: 82 -----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP---- 120
++Y CGDV A +V KM KD W ++I G A +
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEA 206
Query: 121 --------FPTIRPDEVTYVGVLSACTHNGNETF 146
I+PD T V +LSAC G T
Sbjct: 207 LALYTEMNSKGIKPDGFTIVSLLSACAKIGALTL 240
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 97.4 bits (241), Expect = 3e-20, Method: Composition-based stats.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
++DV+S+T ++ GY +RG ++ A++ F ++P +D V W AMI GY ++EAL LF +
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
M +N+RPDE T+V +++A +Y KCG+
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGE 316
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI------------RPDEVTYVGVLSA 137
+E A + ++ KD +W +I G + + P++VT + +L A
Sbjct: 317 LETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 376
Query: 138 CTHNG 142
C H G
Sbjct: 377 CAHLG 381
Score = 94.0 bits (232), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 47/178 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G+++ A F ++P +D + W +I GY +N ++EAL LF EM S P+
Sbjct: 307 LIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 72 EFTIVRILTAY-----------------------------------MYCKCGDVEKAQRV 96
+ T++ IL A MY KCGD+E A +V
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQV 426
Query: 97 LRKMLRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVLSACTHNG 142
+L K +W AMI G A+ D F +R PD++T+VG+LSAC+H+G
Sbjct: 427 FNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G ++ A Q F + + W AMI G+ R + LF M+ I+
Sbjct: 408 TSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQ 467
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFP-- 122
PD+ T V +L+A + G ++ + + R M + K T + MI L S F
Sbjct: 468 PDDITFVGLLSACSH--SGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEA 525
Query: 123 -------TIRPDEVTYVGVLSACTHNGN----ETFVIN 149
+ PD V + +L AC +GN E+F N
Sbjct: 526 EEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V+GY G V+ AR+ F +MP R+ W+ MI+GY + N F +A+ LF
Sbjct: 178 MGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLF 237
Query: 61 PEMQTSNIRPDEFTIVRILT-------------AY--------------------MYCKC 87
M+ + +E +V +++ AY M+ +C
Sbjct: 238 EFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRC 297
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR------------PDEVTYVGVL 135
GD+EKA V + D +W+++I GLA+ P +VT+ VL
Sbjct: 298 GDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVL 357
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 358 SACSHGG 364
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 51/188 (27%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV ++ Y + G +D+AR+ F +MPER V W +MID +R + AL LF EMQ
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQ 244
Query: 65 TSNIRPDEFTIVRILTA------------------------------------YMYCKCG 88
S PD +T+ +L+A MYCKCG
Sbjct: 245 RS-FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------ISDPFPTIRPDEVTYVGV 134
+ A++V + M ++D +W AMI+G A + D +RP+ VT+VG+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363
Query: 135 LSACTHNG 142
L AC H G
Sbjct: 364 LIACNHRG 371
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 53/185 (28%)
Query: 22 VDIARQYFAQMPERDYVLWTAMIDGYLR-VNRFREALTLFPEM-QTSNIRPDEFTIVRIL 79
V+ A + F + +W +I V+R EA L+ +M + PD+ T +L
Sbjct: 99 VNYAFRVFDSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVL 158
Query: 80 TA---------------------------------YMYCKCGDVEKAQRVLRKMLRKDKF 106
A ++Y CG ++ A++V +M +
Sbjct: 159 KACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLV 218
Query: 107 TWTAMIVGLAISDPFPT-----------IRPDEVTYVGVLSACTHNGN-------ETFVI 148
+W +MI L + + PD T VLSAC G+ F++
Sbjct: 219 SWNSMIDALVRFGEYDSALQLFREMQRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLL 278
Query: 149 NSCNL 153
C++
Sbjct: 279 RKCDV 283
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 96.7 bits (239), Expect = 5e-20, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV++W ++ GY G V A+ F QMP RD V + +M+ GY++ EAL +F
Sbjct: 278 MPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIF 337
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M+ S++ PD+ T+V +L A MY K
Sbjct: 338 SDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSK 397
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGV 134
CG ++ A V + K W AMI GLAI F +++PD++T+VGV
Sbjct: 398 CGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGV 457
Query: 135 LSACTHNG 142
L+AC+H+G
Sbjct: 458 LNACSHSG 465
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 1 MKNKDVISWTDIVSGYINRGQ-VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTL 59
M+ K++ISW ++SGY VDIA + FA MPE+D + W +MIDGY++ R +A L
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGL 274
Query: 60 FPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
F M R D T ++ Y K G V A+ + +M +D + +M+ G
Sbjct: 275 FDVMP----RRDVVTWATMIDG--YAKLGFVHHAKTLFDQMPHRDVVAYNSMMAG 323
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 36/143 (25%)
Query: 9 WTDI------VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTL 59
W+D+ + Y+ G + ++RQ F +MP+RD V + +MIDGY++ + RE L
Sbjct: 153 WSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDL 212
Query: 60 FPEMQTSNI------------RPDEFTIVRILTAYM--------------YCKCGDVEKA 93
P M+ N+ D I L A M Y K G +E A
Sbjct: 213 MP-MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDA 271
Query: 94 QRVLRKMLRKDKFTWTAMIVGLA 116
+ + M R+D TW MI G A
Sbjct: 272 KGLFDVMPRRDVVTWATMIDGYA 294
>sp|O04590|PPR88_ARATH Pentatricopeptide repeat-containing protein At1g62260,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E10 PE=2
SV=1
Length = 656
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D SW +VSGY + G V++AR YF + PE+ V W ++I Y + ++EA+ LF
Sbjct: 338 MPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLF 397
Query: 61 PEMQTSNIRPDEFTIVRILTAY--------------------------------MYCKCG 88
M +PD T+ +L+A MY +CG
Sbjct: 398 IRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCG 457
Query: 89 DVEKAQRVLRKM-LRKDKFTWTAMIVGLAIS-------DPFPTIR-----PDEVTYVGVL 135
++ +++R+ +M L+++ TW AMI G A + F +++ P +T+V VL
Sbjct: 458 EIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVL 517
Query: 136 SACTHNG 142
+AC H G
Sbjct: 518 NACAHAG 524
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V+SW ++ Y+ G V AR F QM +RD + W MIDGY+ V+R +A LF EM
Sbjct: 279 KNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEM 338
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI----------- 112
P+ + Y G+VE A+ K K +W ++I
Sbjct: 339 ------PNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKE 392
Query: 113 -VGLAISDPFPTIRPDEVTYVGVLSACT 139
V L I +PD T +LSA T
Sbjct: 393 AVDLFIRMNIEGEKPDPHTLTSLLSAST 420
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQV---DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL 57
M +DV++W ++SGY++ G + + AR+ F +MP RD W MI GY + R EAL
Sbjct: 97 MPKRDVVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEAL 156
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
LF +M P+ + +C+ G+V+ A + RKM KD A++ GL
Sbjct: 157 LLFEKM------PERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGL 208
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR---EAL 57
++ ++ ++W ++SGY+ R +++ AR+ F MP+RD V W MI GY+ R EA
Sbjct: 66 LEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYVSCGGIRFLEEAR 125
Query: 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
LF EM + D F+ +++ Y K + +A + KM ++ +W+AMI G
Sbjct: 126 KLFDEMPSR----DSFSWNTMISG--YAKNRRIGEALLLFEKMPERNAVSWSAMITGF 177
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
DV +++ Y G++ +R+ F +M +R+ + W AMI GY EAL LF M
Sbjct: 442 DVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSM 501
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96
+++ I P T V +L A + D KAQ V
Sbjct: 502 KSNGIYPSHITFVSVLNACAHAGLVDEAKAQFV 534
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76
I G + AR F ++ R+ V W MI GY++ +A LF M + D T
Sbjct: 51 IRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMP----KRDVVTWN 106
Query: 77 RILTAYMYCKCGDV---EKAQRVLRKMLRKDKFTWTAMIVGLA 116
+++ Y+ CG + E+A+++ +M +D F+W MI G A
Sbjct: 107 TMISGYV--SCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYA 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 56
M ++ +SW+ +++G+ G+VD A F +MP +D A++ G ++ R EA
Sbjct: 162 MPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEA 217
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 45/186 (24%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
++ +++ W ++ GY+ G AR F +M +R V W MI GY F++A+ +F
Sbjct: 204 RDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFR 263
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
EM+ +IRP+ T+V +L A MY KCG
Sbjct: 264 EMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLS 136
+EKA V ++ R++ TW+AMI G AI D F +RP +V Y+ +L+
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 137 ACTHNG 142
AC+H G
Sbjct: 384 ACSHGG 389
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + + ++ Y G ++ A F ++P + + W+AMI+G+ + +A+ F +M+
Sbjct: 308 DDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMR 367
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISD 119
+ +RP + + +LTA + G VE+ +R +M+ D + M+ L S
Sbjct: 368 QAGVRPSDVAYINLLTACSH--GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSG 425
Query: 120 PFPT---------IRPDEVTYVGVLSACTHNGN 143
I+PD+V + +L AC GN
Sbjct: 426 LLDEAEEFILNMPIKPDDVIWKALLGACRMQGN 458
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFRE--ALTLFPEMQTSN-IRPDEF 73
++ +D A + F QMP+R+ W +I G+ + + A+TLF EM + + P+ F
Sbjct: 70 LHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRF 129
Query: 74 TIVRILTAYMYCKCGDVEKAQRV----LRKMLRKDKFTWTAMI 112
T +L A K G +++ +++ L+ D+F + ++
Sbjct: 130 TFPSVLKA--CAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLV 170
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 49/120 (40%)
Query: 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95
+ VLW MIDGY+R+ GD + A+
Sbjct: 207 EIVLWNVMIDGYMRL-------------------------------------GDCKAARM 229
Query: 96 VLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSACTHNGN 143
+ KM ++ +W MI G +++ F IRP+ VT V VL A + G+
Sbjct: 230 LFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGS 289
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 95.9 bits (237), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 45/185 (24%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D + W+ ++ Y G +D AR F ++ E+D V WT+MID Y + +R+RE +LF E
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 63 MQTSNIRPDEFTIVRILTAY---------------------------------MYCKCGD 89
+ S RP+E+T +L A MY KCG+
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGN 369
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLAIS-DPFPTI-----------RPDEVTYVGVLSA 137
+E A+ V+ + D +WT++I G A + P + +PD VT+V VLSA
Sbjct: 370 IESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSA 429
Query: 138 CTHNG 142
CTH G
Sbjct: 430 CTHAG 434
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 46/185 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M N+D+ SW +V+GY G ++ AR+ F +M E+D WTAM+ GY++ ++ EAL L+
Sbjct: 146 MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY 205
Query: 61 PEMQ-TSNIRPDEFTIV--------------------RILTAY-------------MYCK 86
MQ N RP+ FT+ I+ A MY K
Sbjct: 206 SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 265
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI----------VGLAISDPF--PTIRPDEVTYVGV 134
CG +++A+ + K++ KD +WT+MI G ++ RP+E T+ GV
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325
Query: 135 LSACT 139
L+AC
Sbjct: 326 LNACA 330
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ +V Y G ++ A+ P+ D V WT++I G + + EAL F + S +
Sbjct: 358 SSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTK 417
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFT-----WTAMIVGLAISDPFPTI 124
PD T V +L+A + G VEK + K + + +T ++ LA S F +
Sbjct: 418 PDHVTFVNVLSACTH--AGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQL 475
Query: 125 ---------RPDEVTYVGVLSACTHNGN 143
+P + + VL C+ GN
Sbjct: 476 KSVISEMPMKPSKFLWASVLGGCSTYGN 503
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 42/124 (33%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
++ W ++ Y G + AR+ F +MP RD W M++GY V
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEV--------------- 164
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR 125
G +E+A+++ +M KD ++WTAM+ G D +
Sbjct: 165 ----------------------GLLEEARKLFDEMTEKDSYSWTAMVTGYVKKD-----Q 197
Query: 126 PDEV 129
P+E
Sbjct: 198 PEEA 201
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M+ ++V SW ++SGY G V A++ F MP RD V W AM+ Y V + E L +F
Sbjct: 232 MEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVF 291
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+M S +PD FT+V +L+A MY K
Sbjct: 292 NKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSK 351
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGV 134
CG ++KA V R ++D TW ++I L++ + +P+ +T++GV
Sbjct: 352 CGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGV 411
Query: 135 LSACTHNG 142
LSAC H G
Sbjct: 412 LSACNHVG 419
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV +V+ Y G +IAR+ +MP RD V W +++ YL EA LF EM+
Sbjct: 174 DVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEME 233
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA-------I 117
N+ F I Y G V++A+ V M +D +W AM+ A +
Sbjct: 234 ERNVESWNFMISG------YAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEV 287
Query: 118 SDPF------PTIRPDEVTYVGVLSACTHNGN 143
+ F T +PD T V VLSAC G+
Sbjct: 288 LEVFNKMLDDSTEKPDGFTLVSVLSACASLGS 319
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+ + +++GY+ G ++ A F QMP +D + WT MI GY + R+REA+ +F
Sbjct: 216 MSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVF 275
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I PDE T+ +++A MY KC
Sbjct: 276 YKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKC 335
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVGVL 135
G +E+A V + +K+ F W ++I GLA +++P+ VT+V V
Sbjct: 336 GSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVF 395
Query: 136 SACTHNG 142
+ACTH G
Sbjct: 396 TACTHAG 402
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G++ AR+ F +MPERD + WT M+ Y RV A +L +M N
Sbjct: 163 TTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKN-- 220
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
E T ++ YM G++E+A+ + +M KD +WT MI G + + +
Sbjct: 221 --EATSNCLINGYM--GLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFY 276
Query: 122 ----PTIRPDEVTYVGVLSACTHNG 142
I PDEVT V+SAC H G
Sbjct: 277 KMMEEGIIPDEVTMSTVISACAHLG 301
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G ++ A F +P+++ W ++I+G +EAL +F +M+
Sbjct: 321 DVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKME 380
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
+++P+ T V + TA + G V++ +R+ R M+
Sbjct: 381 MESVKPNAVTFVSVFTACTH--AGLVDEGRRIYRSMI 415
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 31/141 (21%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N+D ++ + ++D+A QM E + ++ A+ G++ + +L L+
Sbjct: 57 NQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVR 116
Query: 63 MQTSNIRPDEFTIVRILTAY-------------------------------MYCKCGDVE 91
M ++ P +T ++ A Y G +
Sbjct: 117 MLRDSVSPSSYTYSSLVKASSFASRFGESLQAHIWKFGFGFHVKIQTTLIDFYSATGRIR 176
Query: 92 KAQRVLRKMLRKDKFTWTAMI 112
+A++V +M +D WT M+
Sbjct: 177 EARKVFDEMPERDDIAWTTMV 197
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 46/184 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y + G+V+ A + F +MPER+ V WTAMI G+ + R L L+ +M+
Sbjct: 154 DVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMR 213
Query: 65 TSNIRPDEFTIVRILTA---------------------------------YMYCKCGDVE 91
S P+++T +L+A MYCKCGD++
Sbjct: 214 KSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLK 273
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLA-------------ISDPFPTIRPDEVTYVGVLSAC 138
A R+ + KD +W +MI G A + P +PD +TY+GVLS+C
Sbjct: 274 DAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSC 333
Query: 139 THNG 142
H G
Sbjct: 334 RHAG 337
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV+++ ++ G + ++ AR+ F MP RD V W ++I GY ++N REA+ LF EM
Sbjct: 181 RDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEM 240
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
++PD IV L+A Y KCG +
Sbjct: 241 VALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFI 300
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPF-----PTIRPDEVTYVGVLSAC 138
+ A + K FTW AMI GLA+ D F I+PD VT++ VL C
Sbjct: 301 DTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGC 360
Query: 139 THNG 142
+H+G
Sbjct: 361 SHSG 364
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G +D A + F ++ W AMI G + F +M +S I+
Sbjct: 288 TGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIK 347
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
PD T + +L + G V++A+ + +M
Sbjct: 348 PDGVTFISVLVGCSH--SGLVDEARNLFDQM 376
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ + ++ Y +D A Q F + P+RD V + +IDG ++ A LF M
Sbjct: 151 DLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMP 210
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTI 124
++ I Y + +A ++ +M+ +GL
Sbjct: 211 LRDLVSWNSLISG------YAQMNHCREAIKLFDEMV----------ALGL--------- 245
Query: 125 RPDEVTYVGVLSACTHNGN 143
+PD V V LSAC +G+
Sbjct: 246 KPDNVAIVSTLSACAQSGD 264
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 90/187 (48%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++D ++ T +++ Y G + A + F + +D V WTAMIDG +R +AL LF
Sbjct: 184 MPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELF 243
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EMQ N+ +EFT V +L+A MY +C
Sbjct: 244 REMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRC 303
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
GD+ +A+RV R M KD ++ MI GLA+ + F + RP++VT V +L
Sbjct: 304 GDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALL 363
Query: 136 SACTHNG 142
+AC+H G
Sbjct: 364 NACSHGG 370
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 29/121 (23%)
Query: 21 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
VD A F+ + + L+TAMIDG++ R + ++L+ M +++ PD + I +L
Sbjct: 76 SVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLK 135
Query: 81 A-----------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
A +Y K G++ A+++ +M +D T M
Sbjct: 136 ACDLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVM 195
Query: 112 I 112
I
Sbjct: 196 I 196
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G ++ AR+ F M ++D + + MI G EA+ F +M RP+
Sbjct: 296 LINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPN 355
Query: 72 EFTIVRILTAYMYCKCGDV-----EKAQRVLRKMLRKDKFTWTAMIVGLA--------IS 118
+ T+V +L A + D+ +RV + + + ++G
Sbjct: 356 QVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFI 415
Query: 119 DPFPTIRPDEVTYVGVLSACTHNGN 143
+ P I PD + +LSAC +GN
Sbjct: 416 ENIP-IEPDHIMLGTLLSACKIHGN 439
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 93.2 bits (230), Expect = 6e-19, Method: Composition-based stats.
Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+ W ++ G+ + G V+ F QM ER V W +MI + R REAL LF
Sbjct: 163 MSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELF 222
Query: 61 PEMQTSNIRPDEFTIVRIL-----------------TAY-----------------MYCK 86
EM PDE T+V +L TA YCK
Sbjct: 223 CEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCK 282
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT------IRPDEVTYVG 133
GD+E A + RKM R++ +W +I G A++ D F + P+E T++G
Sbjct: 283 SGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLG 342
Query: 134 VLSACTHNG 142
VL+ C++ G
Sbjct: 343 VLACCSYTG 351
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 55/139 (39%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y + G++ A++ F +M ER+ V+W MI G+
Sbjct: 143 VVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGF------------------------ 178
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA--------------- 116
C GDVE+ + ++M + +W +MI L+
Sbjct: 179 -------------CDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEM 225
Query: 117 ISDPFPTIRPDEVTYVGVL 135
I F PDE T V VL
Sbjct: 226 IDQGFD---PDEATVVTVL 241
Score = 36.6 bits (83), Expect = 0.054, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 33/129 (25%)
Query: 23 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI------- 75
D A + F+ + + +++ AMI Y V E+L+ F M++ I DE+T
Sbjct: 53 DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112
Query: 76 --------------------------VRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT 109
+RI +Y G + AQ+V +M ++ W
Sbjct: 113 SSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWN 172
Query: 110 AMIVGLAIS 118
MI G S
Sbjct: 173 LMIRGFCDS 181
>sp|P0C7R0|PPR69_ARATH Pentatricopeptide repeat-containing protein At1g32415,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2
SV=1
Length = 761
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 47/185 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D +SWT ++ GY+ G V A F ++ ++D V WT MI G ++ F EA +L +M
Sbjct: 399 DKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAEAASLLSDMV 458
Query: 65 TSNIRPDEFTIVRILTA-----------------------------------YMYCKCGD 89
++P T +L++ MY KCG
Sbjct: 459 RCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGA 518
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA---ISDPFPTI---------RPDEVTYVGVLSA 137
+E A + KM++KD +W +MI+GL+ ++D + +P+ VT++GVLSA
Sbjct: 519 IEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSA 578
Query: 138 CTHNG 142
C+H+G
Sbjct: 579 CSHSG 583
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 20/158 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW +V+G I G ++ A+Q F MP RD V W AMI GY+ + EA LF
Sbjct: 164 MPERNVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLF 223
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
+M N+ + Y YC+ GDV +A R+ +M ++ +WTAMI G A ++
Sbjct: 224 GDMSEKNV------VTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNEL 277
Query: 121 F--------------PTIRPDEVTYVGVLSACTHNGNE 144
+ + P+ T + + AC G E
Sbjct: 278 YREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVE 315
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V++WT +V GY G V A + F +MPER+ V WTAMI G+ +REAL LF
Sbjct: 226 MSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLF 285
Query: 61 PEMQ--TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
EM+ + P+ T++ + A CG + R L + L IS
Sbjct: 286 LEMKKDVDAVSPNGETLISLAYA-----CGGLGVEFRRLGEQLHAQ-----------VIS 329
Query: 119 DPFPTIRPDE---------VTYVGVLSACTHNGNETFVINSCNL 153
+ + T+ D G++++ NE+F + SCN+
Sbjct: 330 NGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFDLQSCNI 373
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 7/110 (6%)
Query: 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65
V+ WT ++S Y G +D AR F MPER+ V AM+ GY++ R EA TLF EM
Sbjct: 77 VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK 136
Query: 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
+ + +T+ +LTA C G E A + +M ++ +W ++ GL
Sbjct: 137 NVV---SWTV--MLTA--LCDDGRSEDAVELFDEMPERNVVSWNTLVTGL 179
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++++ +++GY+ +++ A F +MP ++ V WT M+ R +A+ LF
Sbjct: 103 MPERNIVTCNAMLTGYVKCRRMNEAWTLFREMP-KNVVSWTVMLTALCDDGRSEDAVELF 161
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119
EM N+ + ++ + GD+EKA++V M +D +W AMI G +D
Sbjct: 162 DEMPERNVVSWNTLVTGLI------RNGDMEKAKQVFDAMPSRDVVSWNAMIKGYIEND 214
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 50/152 (32%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEM 63
D+ S I++ Y+ G ++ A F ++ D V WT+MIDGYL
Sbjct: 367 DLQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYL--------------- 411
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT 123
+ GDV +A + +K+ KD TWT MI GL ++ F
Sbjct: 412 ----------------------EAGDVSRAFGLFQKLHDKDGVTWTVMISGLVQNELFAE 449
Query: 124 ------------IRPDEVTYVGVLSACTHNGN 143
++P TY +LS+ N
Sbjct: 450 AASLLSDMVRCGLKPLNSTYSVLLSSAGATSN 481
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V +W +++GY G++ A+ F +MP+RD V W AMI GY + EAL LF
Sbjct: 338 MPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLF 397
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M+ R + + L+ MYCKC
Sbjct: 398 VQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKC 457
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLA------------ISDPFPTIRPDEVTYVGVL 135
G +E+A + ++M KD +W MI G + S ++PD+ T V VL
Sbjct: 458 GSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVL 517
Query: 136 SACTHNG 142
SAC+H G
Sbjct: 518 SACSHTG 524
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SW I++GY G++D ARQ F + P +D WTAM+ GY++ EA LF
Sbjct: 245 MNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELF 304
Query: 61 PEMQTSN-----------IRPDEFTIVRILTAYM--------------YCKCGDVEKAQR 95
+M N ++ + + + L M Y +CG + +A+
Sbjct: 305 DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKN 364
Query: 96 VLRKMLRKDKFTWTAMIVGLAIS-DPFPTIR 125
+ KM ++D +W AMI G + S F +R
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 12/109 (11%)
Query: 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLR---VNRFREALTLFPEM 63
+S+ ++SGY+ G+ ++AR+ F +MPERD V W MI GY+R + + RE + PE
Sbjct: 96 VSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPE- 154
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112
D + +L+ Y C V+ A+ V +M K+ +W A++
Sbjct: 155 ------RDVCSWNTMLSGYAQNGC--VDDARSVFDRMPEKNDVSWNALL 195
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 31/142 (21%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV SW ++SGY G VD AR F +MPE++ V W A++ Y++ ++ EA LF
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 61 PEMQ----------------------------TSNIRPDEFTIVRILTAYMYCKCGDVEK 92
+ + N+R D + I+T Y + G +++
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVR-DVVSWNTIITG--YAQSGKIDE 268
Query: 93 AQRVLRKMLRKDKFTWTAMIVG 114
A+++ + +D FTWTAM+ G
Sbjct: 269 ARQLFDESPVQDVFTWTAMVSG 290
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 62/113 (54%), Gaps = 6/113 (5%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
+N ++SW ++ G++ + ++ ARQ+F M RD V W +I GY + + EA LF
Sbjct: 215 ENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFD 274
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
E ++ FT +++ Y+ + VE+A+ + KM +++ +W AM+ G
Sbjct: 275 ESPVQDV----FTWTAMVSGYIQNRM--VEEARELFDKMPERNEVSWNAMLAG 321
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
+ D+ W +S Y+ G+ + A + F +MP V + MI GYLR F A LF E
Sbjct: 61 DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA------ 116
M P+ + + Y + ++ KA+ + M +D +W M+ G A
Sbjct: 121 M------PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVD 174
Query: 117 ----ISDPFPTIRPDEVTYVGVLSACTHN 141
+ D P ++V++ +LSA N
Sbjct: 175 DARSVFDRMP--EKNDVSWNALLSAYVQN 201
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D++SW ++ GY+ + AR+ F MPERD W M+ GY + +A ++F
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180
Query: 61 PEMQTSN 67
M N
Sbjct: 181 DRMPEKN 187
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75
Y G ++ A F +M +D V W MI GY R AL F M+ ++PD+ T+
Sbjct: 454 YCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATM 513
Query: 76 VRILTAYMYCKCGDVEKAQRVLRKM 100
V +L+A + G V+K ++ M
Sbjct: 514 VAVLSACSH--TGLVDKGRQYFYTM 536
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 90.1 bits (222), Expect = 5e-18, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 57/195 (29%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SWT ++SGY G + A F MPERD W A++ + F EA++LF
Sbjct: 188 MSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFLEAVSLF 247
Query: 61 PEM-QTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
M +IRP+E T+V +L+A +Y K
Sbjct: 248 RRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSLVDLYGK 307
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMI-------------------VGLAISDPFPTIRPD 127
CG++E+A V + +K W +MI + L I+D I+PD
Sbjct: 308 CGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIND----IKPD 363
Query: 128 EVTYVGVLSACTHNG 142
+T++G+L+ACTH G
Sbjct: 364 HITFIGLLNACTHGG 378
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 89.7 bits (221), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/193 (30%), Positives = 85/193 (44%), Gaps = 51/193 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++VI+ T ++SGY AR F +M ER+ V W A+I GY + EAL+LF
Sbjct: 315 MPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLF 374
Query: 61 PEMQTSNIRPDEFTIVRILTAY-------------------------------------- 82
++ ++ P ++ IL A
Sbjct: 375 CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLI 434
Query: 83 -MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEV 129
MY KCG VE+ V RKM+ +D +W AMI+G A + + F + +PD +
Sbjct: 435 DMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHI 494
Query: 130 TYVGVLSACTHNG 142
T +GVLSAC H G
Sbjct: 495 TMIGVLSACGHAG 507
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 45/183 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ +W +V+G G +D A F MPERD W +M+ G+ + +R EAL F
Sbjct: 81 MPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYF 140
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
M +E++ +L+A MY KC
Sbjct: 141 AMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKC 200
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVL 135
G+V AQRV +M ++ +W ++I + P + PDEVT V+
Sbjct: 201 GNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVI 260
Query: 136 SAC 138
SAC
Sbjct: 261 SAC 263
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+ ++ Y+ G V+ F +M ERD V W AMI G+ + EAL LF EM
Sbjct: 426 DIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREML 485
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-------KDKFTWTAMIVGLA- 116
S +PD T++ +L+A + G VE+ + M R +D +T ++G A
Sbjct: 486 ESGEKPDHITMIGVLSACGH--AGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543
Query: 117 -------ISDPFPTIRPDEVTYVGVLSACTHNGNETF 146
+ + P ++PD V + +L+AC + N T
Sbjct: 544 FLEEAKSMIEEMP-MQPDSVIWGSLLAACKVHRNITL 579
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 34/148 (22%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y G V+ A++ F +M +R+ V W ++I + + EAL +F M
Sbjct: 186 DVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245
Query: 65 TSNIRPDEFTIVRILTAY----------------------------------MYCKCGDV 90
S + PDE T+ +++A MY KC +
Sbjct: 246 ESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRI 305
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
++A+ + M ++ T+MI G A++
Sbjct: 306 KEARFIFDSMPIRNVIAETSMISGYAMA 333
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
Y KCG +E ++V KM +++ +TW +++ GL
Sbjct: 65 YSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGL 96
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 29/64 (45%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D+I V Y ++ AR F MP R+ + T+MI GY + A +F +M
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMA 347
Query: 65 TSNI 68
N+
Sbjct: 348 ERNV 351
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 89.4 bits (220), Expect = 8e-18, Method: Composition-based stats.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 52/194 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K V+SWT ++ + ++ R+ F +MPER+ V WT M+ GYL RE L L
Sbjct: 172 LEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELL 231
Query: 61 PEM---------------------QTSNI------------------RPDEFTIVRILTA 81
EM Q+ N+ + V + TA
Sbjct: 232 AEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTA 291
Query: 82 Y--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT----IRPDE 128
MY KCG+++ + V R M +++ TW A+ GLA+ D FP ++PD+
Sbjct: 292 LVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIREVKPDD 351
Query: 129 VTYVGVLSACTHNG 142
+T+ VLSAC+H+G
Sbjct: 352 LTFTAVLSACSHSG 365
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 35/132 (26%)
Query: 16 YINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73
Y + G++ A++ F ++P E+D V WT ++ + R ++ LF EM+ + D+
Sbjct: 53 YASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDV 112
Query: 74 TIV-------------------------RILTAY--------MYCKCGDVEKAQRVLRKM 100
++V +LT+ MY KCG V + +R+ ++
Sbjct: 113 SVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEEL 172
Query: 101 LRKDKFTWTAMI 112
K +WT ++
Sbjct: 173 EEKSVVSWTVVL 184
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 47/186 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFP 61
KDV W +++GY G++D AR MP R+ V WT +I GY + R EA+ +F
Sbjct: 180 KDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQ 239
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M N+ PDE T++ +L+A MY K G
Sbjct: 240 RMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSG 299
Query: 89 DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT------------IRPDEVTYVGVLS 136
++ KA V + ++ TWT +I GLA +RP++VT++ +LS
Sbjct: 300 NITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILS 359
Query: 137 ACTHNG 142
AC+H G
Sbjct: 360 ACSHVG 365
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y G + A F + ER+ V WT +I G EAL +F M + +RP+
Sbjct: 291 VIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPN 350
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
+ T + IL+A + G V+ +R+ M K
Sbjct: 351 DVTFIAILSACSH--VGWVDLGKRLFNSMRSK 380
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +++ T +VSGY G++D A+ F Q ++D V WT MI Y+ + +EAL +F
Sbjct: 273 MSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVF 332
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
EM S I+PD ++ +++A MY KC
Sbjct: 333 EEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKC 392
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI----SDPFP--------TIRPDEVTYVGVL 135
G ++ + V KM R++ +W++MI L++ SD + P+EVT+VGVL
Sbjct: 393 GGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVL 452
Query: 136 SACTHNG 142
C+H+G
Sbjct: 453 YGCSHSG 459
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 33/138 (23%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T + Y + G+++ AR F +M RD V W MI+ Y R EA LF EM+ SN+
Sbjct: 150 TGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM 209
Query: 70 PDEFTIVRILTA---------------------------------YMYCKCGDVEKAQRV 96
PDE + I++A MY G ++ A+
Sbjct: 210 PDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269
Query: 97 LRKMLRKDKFTWTAMIVG 114
RKM ++ F TAM+ G
Sbjct: 270 FRKMSVRNLFVSTAMVSG 287
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y G +D R F +MP R+ V W++MI+ +AL+LF M+ N+ P+
Sbjct: 385 LINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPN 444
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
E T V +L Y G VE+ +++ M
Sbjct: 445 EVTFVGVL--YGCSHSGLVEEGKKIFASM 471
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 74/188 (39%), Gaps = 47/188 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREA 56
M ++DV++W ++ Y G VD A + F +M + D ++ ++ R R
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 231
Query: 57 LTLFPEMQTSNIRPDEFTIVRILTAYM-----------------------------YCKC 87
++ + +++R D + ++T Y Y KC
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGV 134
G ++ AQ + + +KD WT MI SD +P I+PD V+ V
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESD-YPQEALRVFEEMCCSGIKPDVVSMFSV 350
Query: 135 LSACTHNG 142
+SAC + G
Sbjct: 351 ISACANLG 358
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMI-----VGLAISDPF--------PTIRPDEV 129
MY CG + A+ V +M +D TW MI GL + + F + PDE+
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGL-VDEAFKLFEEMKDSNVMPDEM 213
Query: 130 TYVGVLSACTHNGN 143
++SAC GN
Sbjct: 214 ILCNIVSACGRTGN 227
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 82/176 (46%), Gaps = 44/176 (25%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
+ ++S Y G +D AR+ F QM ++D V WTAMI Y + + EA LF EM+ + +
Sbjct: 272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVS 331
Query: 70 PDEFTIVRILTAY---------------------------------MYCKCGDVEKAQRV 96
PD T+ +L+A MY KCG VE+A RV
Sbjct: 332 PDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 391
Query: 97 LRKMLRKDKFTWTAMIVGLA----------ISDPFPTIRPDEVTYVGVLSACTHNG 142
M K++ TW AMI A + D ++ P ++T++GVLSAC H G
Sbjct: 392 FEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM-SVPPSDITFIGVLSACVHAG 446
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 81/184 (44%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+DV ++ Y GQV AR+ F ++ ERD V W +MI GY ++A+ LF +M
Sbjct: 165 RDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKM 224
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+ PDE T+V +L A MY KCGD+
Sbjct: 225 EEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDL 284
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLA----ISDPFPT--------IRPDEVTYVGVLSAC 138
+ A+RV +M++KD+ WTAMI + S+ F + PD T VLSAC
Sbjct: 285 DSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSAC 344
Query: 139 THNG 142
G
Sbjct: 345 GSVG 348
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 46/173 (26%)
Query: 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIRPDEFTI 75
+ G + + F+ E ++ + MI G N AL+L+ M+ S ++PD+FT
Sbjct: 76 VELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTY 135
Query: 76 VRILTA---------------------------------YMYCKCGDVEKAQRVLRKMLR 102
+ A MY KCG V A+++ ++
Sbjct: 136 NFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITE 195
Query: 103 KDKFTWTAMIVGLA----ISDPFPTIR--------PDEVTYVGVLSACTHNGN 143
+D +W +MI G + D R PDE T V +L AC+H G+
Sbjct: 196 RDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGD 248
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T +V Y G+V+ A + F MP ++ W AMI Y +EAL LF M ++
Sbjct: 373 TGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRM---SVP 429
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLA-------- 116
P + T + +L+A ++ G V + R +M L +T +I L+
Sbjct: 430 PSDITFIGVLSACVH--AGLVHQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEA 487
Query: 117 --ISDPFPTIRPDEVTYVGVLSAC 138
+ FP +PDE+ +L AC
Sbjct: 488 WEFMERFPG-KPDEIMLAAILGAC 510
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV + +V Y D A++ F +MP R+ V WTA+I GY++ F + + +F EM
Sbjct: 239 DVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEML 298
Query: 65 TSNIRPDEFTIVRILTA---------------YM------------------YCKCGDVE 91
S++ P+E T+ +L+A YM Y KCG +E
Sbjct: 299 KSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLE 358
Query: 92 KAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSACT 139
+A V ++ K+ +TWTAMI G A D F T + P+EVT++ VLSAC
Sbjct: 359 EAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA 418
Query: 140 HNG 142
H G
Sbjct: 419 HGG 421
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 46/177 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++SGY + G D A + F ++D V WTAMIDG++R EA+ F EM+ + + +
Sbjct: 144 LISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAAN 203
Query: 72 EFTIVRILTAY----------------------------------MYCKCGDVEKAQRVL 97
E T+V +L A MY KC + AQ+V
Sbjct: 204 EMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVF 263
Query: 98 RKMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
+M ++ TWTA+I G S F + P+E T VLSAC H G
Sbjct: 264 DEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVG 320
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y+ G ++ A F ++ E++ WTAMI+G+ R+A LF M +S++
Sbjct: 345 TTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVS 404
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100
P+E T + +L+A + G VE+ +R+ M
Sbjct: 405 PNEVTFMAVLSACAH--GGLVEEGRRLFLSM 433
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVN-RFREALTL 59
MK KD+ SW +V G++ G ++ A+ F QMP+RD V W +++ GY + R L
Sbjct: 295 MKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVREL 354
Query: 60 FPEMQ-TSNIRPDEFTIVRILTAY---------------------------------MYC 85
F EM ++PD T+V +++ MYC
Sbjct: 355 FYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYC 414
Query: 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------------PFPTIRPDEVTYVG 133
KCG +E+A V + KD WT+MI GLA + P+ VT +
Sbjct: 415 KCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLA 474
Query: 134 VLSACTHNG 142
VL+AC+H+G
Sbjct: 475 VLTACSHSG 483
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 74/214 (34%), Gaps = 80/214 (37%)
Query: 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68
W +V Y+ G +A + FA+MP D + MI GY + EAL L+ +M + I
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 69 RPDEFTIVRILTAY-----------------------------------MYCKCGDVEKA 93
PDE+T++ +L MY KC + A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 94 QRVLRKMLRKDKFTWTAMIVGL----------AISDPFP--------------------- 122
+R M +KD +W M+VG A+ D P
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348
Query: 123 --------------TIRPDEVTYVGVLSACTHNG 142
++PD VT V ++S +NG
Sbjct: 349 RTVRELFYEMTIVEKVKPDRVTMVSLISGAANNG 382
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 23/152 (15%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
D + ++ Y G ++ A F E+D LWT+MI G ++AL LF MQ
Sbjct: 402 DAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT------AMIVGLA-- 116
+ P+ T++ +LTA + G VE+ V M KDKF + +V L
Sbjct: 462 EEGVTPNNVTLLAVLTACSH--SGLVEEGLHVFNHM--KDKFGFDPETEHYGSLVDLLCR 517
Query: 117 ----------ISDPFPTIRPDEVTYVGVLSAC 138
+ P +RP + + +LSAC
Sbjct: 518 AGRVEEAKDIVQKKMP-MRPSQSMWGSILSAC 548
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 47/189 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + ++S T +++ Y +G V+ AR F M ERD V W MIDGY + +AL LF
Sbjct: 187 MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLF 246
Query: 61 PE-MQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+ + +PDE T+V L+A MY K
Sbjct: 247 QKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSK 306
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------------DPFPTIRPDEVTYVG 133
CG +E+A V RKD W AMI G A+ ++P ++T++G
Sbjct: 307 CGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIG 366
Query: 134 VLSACTHNG 142
L AC H G
Sbjct: 367 TLQACAHAG 375
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ-TSNI 68
T ++ Y G ++ A F P +D V W AMI GY ++AL LF EMQ + +
Sbjct: 298 TGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGL 357
Query: 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR----KDKFTWTAMIVGL-----AISD 119
+P + T + L A + G V + R+ M + K K +V L +
Sbjct: 358 QPTDITFIGTLQACAH--AGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 415
Query: 120 PFPTIR-----PDEVTYVGVLSACTHNGN 143
+ TI+ D V + VL +C +G+
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHGD 444
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 71/203 (34%), Gaps = 77/203 (37%)
Query: 15 GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFR-EALTLFPEMQTSNIRPDEF 73
Y + G++ + F Q + D L+TA I+ +N + +A L+ ++ +S I P+EF
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAIN-TASINGLKDQAFLLYVQLLSSEINPNEF 131
Query: 74 TIVRILTAY-----------------------------MYCKCGDVEKAQRVLRK----- 99
T +L + +Y K GDV AQ+V +
Sbjct: 132 TFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERS 191
Query: 100 --------------------------MLRKDKFTWTAMIVGLAISDPFPT---------- 123
M +D +W MI G A FP
Sbjct: 192 LVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYA-QHGFPNDALMLFQKLL 250
Query: 124 ----IRPDEVTYVGVLSACTHNG 142
+PDE+T V LSAC+ G
Sbjct: 251 AEGKPKPDEITVVAALSACSQIG 273
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M NK V++W IV+GY+ G+VD A + F MPE++ V W +I G ++ + F EA+ +F
Sbjct: 398 MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVF 457
Query: 61 PEMQT-SNIRPDEFTIVRILTAY---------------------------------MYCK 86
MQ+ + D T++ I +A M+ +
Sbjct: 458 CSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSR 517
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGV 134
CGD E A + + +D WTA I + + D ++PD V +VG
Sbjct: 518 CGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGA 577
Query: 135 LSACTHNG 142
L+AC+H G
Sbjct: 578 LTACSHGG 585
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
KD+ +V Y G++D AR+ F +M ER+ V WT+MI GY R + ++A+ LF M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226
Query: 64 -QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96
+ + P+ T+V +++A K D+E ++V
Sbjct: 227 VRDEEVTPNSVTMVCVISA--CAKLEDLETGEKV 258
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 46/147 (31%)
Query: 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA----------------- 81
++ ++I GY EA+ LF M S I PD++T L+A
Sbjct: 101 MYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160
Query: 82 ----------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD------ 119
+ Y +CG+++ A++V +M ++ +WT+MI G A D
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220
Query: 120 --PFPTIR-----PDEVTYVGVLSACT 139
F +R P+ VT V V+SAC
Sbjct: 221 DLFFRMVRDEEVTPNSVTMVCVISACA 247
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 33/136 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V Y+ +D+A++ F + + L AM Y+R REAL +F M S +RPD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
+++ +++ MY KC + A R+
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396
Query: 99 KMLRKDKFTWTAMIVG 114
+M K TW +++ G
Sbjct: 397 RMSNKTVVTWNSIVAG 412
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64
DV T +V + G + A F + RD WTA I A+ LF +M
Sbjct: 504 DVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMI 563
Query: 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMI-----VG 114
++PD V LTA + G V++ + + ML+ + + M+ G
Sbjct: 564 EQGLKPDGVAFVGALTACSH--GGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAG 621
Query: 115 L-----AISDPFPTIRPDEVTYVGVLSACTHNGN 143
L + + P + P++V + +L+AC GN
Sbjct: 622 LLEEAVQLIEDMP-MEPNDVIWNSLLAACRVQGN 654
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101
A+ID Y++ +R A +F M + T I+ Y+ + G+V+ A M
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTV----VTWNSIVAGYV--ENGEVDAAWETFETMP 430
Query: 102 RKDKFTWTAMIVGLAISDPFPT-------------IRPDEVTYVGVLSACTHNG 142
K+ +W +I GL F + D VT + + SAC H G
Sbjct: 431 EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLG 484
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 29/162 (17%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERD-----YVLWTAMIDGYLRVNRFRE 55
M ++V+SWT ++ GY R A F +M + V +I ++
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK-----------------AQRVLR 98
++ ++ S I ++ + ++ YM C DV K A +R
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 99 KMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTH 140
+ L ++ +++ +RPD ++ + +S+C+
Sbjct: 315 QGLTREALGVFNLMMD-------SGVRPDRISMLSAISSCSQ 349
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
K+V++WT +VSGY+ Q+ IA F +MPER+ V W MIDGY + R +AL LF EM
Sbjct: 107 KNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEM 166
Query: 64 QTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
NI ++V+ L + G +++A + +M R+D +WTAM+ GLA
Sbjct: 167 PERNI-VSWNSMVKALV-----QRGRIDEAMNLFERMPRRDVVSWTAMVDGLA 213
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 19/152 (12%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +DV+SWT +V G G+VD AR+ F MPER+ + W AMI GY + NR EA LF
Sbjct: 197 MPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLF 256
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
M D + ++T ++ + ++ KA + +M K+ +WT MI G +
Sbjct: 257 QVMPER----DFASWNTMITGFIRNR--EMNKACGLFDRMPEKNVISWTTMITGYVENKE 310
Query: 121 FP-------------TIRPDEVTYVGVLSACT 139
+++P+ TYV +LSAC+
Sbjct: 311 NEEALNVFSKMLRDGSVKPNVGTYVSILSACS 342
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M ++V+SW ++ GY G++D A + F +MPER+ V W +M+ ++ R EA+ LF
Sbjct: 135 MPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLF 194
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
M R D + ++ K G V++A+R+ M ++ +W AMI G A
Sbjct: 195 ERMP----RRDVVSWTAMVDG--LAKNGKVDEARRLFDCMPERNIISWNAMITGYA 244
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 48/190 (25%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +D SW +++G+I +++ A F +MPE++ + WT MI GY+ EAL +F
Sbjct: 259 MPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVF 318
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
+M + +++P+ T V IL+A MY K
Sbjct: 319 SKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSK 378
Query: 87 CGDVEKAQRVLRKML--RKDKFTWTAMIV-------GLAISDPFPTIR-----PDEVTYV 132
G++ A+++ L ++D +W +MI G + + +R P VTY+
Sbjct: 379 SGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYL 438
Query: 133 GVLSACTHNG 142
+L AC+H G
Sbjct: 439 NLLFACSHAG 448
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79
G++ AR+ F +PERD V WT +I GY+++ REA LF + + R + T ++
Sbjct: 60 GKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDS---RKNVVTWTAMV 116
Query: 80 TAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
+ Y+ K + A+ + ++M ++ +W MI G A S
Sbjct: 117 SGYLRSK--QLSIAEMLFQEMPERNVVSWNTMIDGYAQS 153
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYF--AQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ I + +++ Y G++ AR+ F + +RD + W +MI Y +EA+ ++
Sbjct: 364 KNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYN 423
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM-------LRKDKFTWTAMIVG 114
+M+ +P T + +L A + G VEK + + LR++ +T + G
Sbjct: 424 QMRKHGFKPSAVTYLNLLFACSH--AGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCG 481
Query: 115 LA--ISDPFPTIRPDEVT-----YVGVLSACT-HN 141
A + D I D+ Y +LSAC HN
Sbjct: 482 RAGRLKDVTNFINCDDARLSRSFYGAILSACNVHN 516
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 48/188 (25%)
Query: 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ + +T ++ GYI G ++ A+ F + +RD V WTAMI GY + + EA+ LF
Sbjct: 343 KDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFR 402
Query: 62 EMQTSNIRPDEFTIVRILTAY---------------------------------MYCKCG 88
M RP+ +T+ +L+ MY K G
Sbjct: 403 SMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462
Query: 89 DVEKAQRVLRKMLR--KDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGV 134
++ A R ++R +D +WT+MI+ LA + F T +RPD +TYVGV
Sbjct: 463 NITSASRAF-DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGV 521
Query: 135 LSACTHNG 142
SACTH G
Sbjct: 522 FSACTHAG 529
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 33/146 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M + SW ++S Y RG +D ++F Q+P+RD V WT MI GY + ++ +A+ +
Sbjct: 75 MPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVM 134
Query: 61 PEMQTSNIRPDEFTIVRILTAY---------------------------------MYCKC 87
+M I P +FT+ +L + MY KC
Sbjct: 135 GDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKC 194
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIV 113
GD A+ V +M+ +D +W AMI
Sbjct: 195 GDPMMAKFVFDRMVVRDISSWNAMIA 220
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 34/135 (25%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D+ SW +++ ++ GQ+D+A F QM ERD V W +MI G+ + AL +F +M
Sbjct: 210 RDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKM 269
Query: 64 -QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGD 89
+ S + PD FT+ +L+A MY +CG
Sbjct: 270 LRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGG 329
Query: 90 VEKAQRVLRKMLRKD 104
VE A+R++ + KD
Sbjct: 330 VETARRLIEQRGTKD 344
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 19/148 (12%)
Query: 12 IVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
+++ Y G + A + F + ERD V WT+MI + EAL LF M +RP
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRP 513
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWT----AMIVGL----------- 115
D T V + +A + G V + ++ M DK T A +V L
Sbjct: 514 DHITYVGVFSACTH--AGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571
Query: 116 AISDPFPTIRPDEVTYVGVLSACTHNGN 143
+ P I PD VT+ +LSAC + N
Sbjct: 572 EFIEKMP-IEPDVVTWGSLLSACRVHKN 598
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 44/154 (28%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQM-------PER------------------ 35
M +D+++W ++SG+ RG A F++M P+R
Sbjct: 238 MAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCI 297
Query: 36 ---------------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80
++ A+I Y R A L + T +++ + FT +L
Sbjct: 298 GKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTA--LLD 355
Query: 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
Y+ K GD+ +A+ + + +D WTAMIVG
Sbjct: 356 GYI--KLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 45/187 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M KD++SWTD++ G+ +G++ + F MPE+D + WTAMI ++ + EAL F
Sbjct: 367 MPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWF 426
Query: 61 PEMQTSNIRPDEFTIVRILTA---------------------------------YMYCKC 87
+M + P+ +T +L+A MYCKC
Sbjct: 427 HKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKC 486
Query: 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPTI-----RPDEVTYVGVL 135
G+ A ++ + + ++ MI G + + F + P+ VT++ +L
Sbjct: 487 GNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALL 546
Query: 136 SACTHNG 142
SAC H G
Sbjct: 547 SACVHVG 553
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 34/149 (22%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M K+V+S + +V GY G++ AR F +M ER+ + WTAMIDGY + F + LF
Sbjct: 203 MAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMIDGYFKAGFFEDGFGLF 262
Query: 61 PEM-QTSNIRPDEFTIVRILTA---------------------------------YMYCK 86
M Q +++ + T+ + A MY K
Sbjct: 263 LRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSK 322
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115
G + +A+ V M KD +W ++I GL
Sbjct: 323 LGYMGEAKAVFGVMKNKDSVSWNSLITGL 351
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFP 61
K+ +S+ +++G++ G+ D A +A+ P RD V ++ GYLR ++ EA+ +F
Sbjct: 142 KNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQ 201
Query: 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114
M + + + YCK G + A+ + +M ++ TWTAMI G
Sbjct: 202 GMAVKEVVSCSSMV------HGYCKMGRIVDARSLFDRMTERNVITWTAMIDG 248
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 56/149 (37%), Gaps = 49/149 (32%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
MKNKD +SW +++G + R Q+ A + F +MP +D V WT MI G+
Sbjct: 336 MKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGF------------- 382
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120
G++ K + M KD TWTAMI +
Sbjct: 383 ------------------------SGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGY 418
Query: 121 F------------PTIRPDEVTYVGVLSA 137
+ + P+ T+ VLSA
Sbjct: 419 YEEALCWFHKMLQKEVCPNSYTFSSVLSA 447
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72
+S + G + A F QM R V W AMI Y + +A +F EM P
Sbjct: 57 ISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEM------PVR 110
Query: 73 FTIV--RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF 121
T ++TA + KC D+ KA + + K+ ++ MI G + F
Sbjct: 111 VTTSYNAMITAMIKNKC-DLGKAYELFCDIPEKNAVSYATMITGFVRAGRF 160
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
+K +D ++ ++SGY+ G+ + A + F M ++ V ++M+ GY ++ R +A +LF
Sbjct: 172 VKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLF 231
Query: 61 PEMQTSNI 68
M N+
Sbjct: 232 DRMTERNV 239
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 50/191 (26%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
M +K++++W I+ Y G V AR F +M ERD V W++MIDGY++ + +AL +F
Sbjct: 169 MPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIF 228
Query: 61 PE-MQTSNIRPDEFTIVRILTAY---------------------------------MYCK 86
+ M+ + + +E T+V ++ A MY K
Sbjct: 229 DQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAK 288
Query: 87 CGDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISDPF-------------PTIRPDEVTY 131
CG + A V + K D W A+I GLA S F I PDE+T+
Sbjct: 289 CGSIGDAWSVFYRASVKETDALMWNAIIGGLA-SHGFIRESLQLFHKMRESKIDPDEITF 347
Query: 132 VGVLSACTHNG 142
+ +L+AC+H G
Sbjct: 348 LCLLAACSHGG 358
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 46/185 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
++ SW +++GYI G+++ A++ F++MP RD V W+ MI G F E+ F E+
Sbjct: 201 RNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFREL 260
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
Q + + P+E ++ +L+A MY +CG+V
Sbjct: 261 QRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNV 320
Query: 91 EKAQRVLRKMLRKDKF-TWTAMIVGLAISDPFPT------------IRPDEVTYVGVLSA 137
A+ V M K +WT+MI GLA+ + PD ++++ +L A
Sbjct: 321 PMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHA 380
Query: 138 CTHNG 142
C+H G
Sbjct: 381 CSHAG 385
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 18/149 (12%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ Y G V+ AR+ F +M + + V W A+I R N A +F +M N
Sbjct: 145 TTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRN-- 202
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF-------- 121
T ++ A Y K G++E A+R+ +M +D +W+ MIVG+A + F
Sbjct: 203 ---HTSWNVMLA-GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFR 258
Query: 122 ----PTIRPDEVTYVGVLSACTHNGNETF 146
+ P+EV+ GVLSAC+ +G+ F
Sbjct: 259 ELQRAGMSPNEVSLTGVLSACSQSGSFEF 287
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 12 IVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70
++ Y G V +AR F M E R V WT+MI G + EA+ LF EM + P
Sbjct: 310 LIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 369
Query: 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102
D + + +L A + G +E+ + +M R
Sbjct: 370 DGISFISLLHACSH--AGLIEEGEDYFSEMKR 399
>sp|Q0WVU0|PP278_ARATH Pentatricopeptide repeat-containing protein At3g51320
OS=Arabidopsis thaliana GN=At3g51320 PE=2 SV=1
Length = 530
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+D++SW I++G + G V A + F +MP+++ + W MI YL N +++LF EM
Sbjct: 182 RDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAYLGANNPGVSISLFREM 241
Query: 64 QTSNIRPDEFTIVRILTAY---------------------------------MYCKCGDV 90
+ + +E T+V +L A MY KC +V
Sbjct: 242 VRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEV 301
Query: 91 EKAQRVLRKMLRKDKFTWTAMIV----------GLAISDPF--PTIRPDEVTYVGVLSAC 138
A+R+ + ++K TW MI+ GL + + +RPDEVT+VGVL C
Sbjct: 302 GLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGC 361
Query: 139 THNG 142
G
Sbjct: 362 ARAG 365
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N V+ T ++ Y +V +AR+ F + R+ V W MI + R L LF
Sbjct: 282 NSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEA 341
Query: 63 MQTSNIRPDEFTIVRILTAYMYCKC---GDVEKAQRVLRKMLR----KDKFTWTAMIVGL 115
M +RPDE T V +L C C G V + Q M+ K F + L
Sbjct: 342 MINGMLRPDEVTFVGVL-----CGCARAGLVSQGQSYYSLMVDEFQIKPNFGHQWCMANL 396
Query: 116 AISDPFPT-------------IRPDEVTYVGVLSACTHNGNETF 146
S FP + P+ + +LS+ GN T
Sbjct: 397 YSSAGFPEEAEEALKNLPDEDVTPESTKWANLLSSSRFTGNPTL 440
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 46/188 (24%)
Query: 1 MKNKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
++ K+ ISWT +VSGY G+ + A + F +P ++ WTA+I G+++ + EA ++F
Sbjct: 166 IRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVF 225
Query: 61 PEMQTSNIRP-DEFTIVRILTAY---------------------------------MYCK 86
EM+ + D + I+ A MY K
Sbjct: 226 TEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAK 285
Query: 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGV 134
C DV A+ + +M +D +WT++IVG LA+ D + ++P+EVT+VG+
Sbjct: 286 CSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGL 345
Query: 135 LSACTHNG 142
+ AC+H G
Sbjct: 346 IYACSHVG 353
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
++ Y V A+ F++M RD V WT++I G + + +AL L+ +M + ++P+
Sbjct: 279 LIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPN 338
Query: 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKM-----LRKDKFTWTAMIVGLAISD------- 119
E T V ++ Y G VEK + + + M +R +T ++ L S
Sbjct: 339 EVTFVGLI--YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAEN 396
Query: 120 -----PFPTIRPDEVTYVGVLSACTHNG 142
PFP PDE T+ +LSAC G
Sbjct: 397 LIHTMPFP---PDEPTWAALLSACKRQG 421
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 34/141 (24%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREAL-TLFPEMQTSNIRP 70
+V+ Y G A Q F +MP RD++ W +++ + N + L +S +RP
Sbjct: 44 LVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRP 103
Query: 71 DEFTIVRILTAY---------------------------------MYCKCGDVEKAQRVL 97
D+F ++ A MY KCG + A+ V
Sbjct: 104 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 163
Query: 98 RKMLRKDKFTWTAMIVGLAIS 118
+ K+ +WTAM+ G A S
Sbjct: 164 DSIRVKNTISWTAMVSGYAKS 184
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 5 DVISWTDIVSGYINRGQVDIARQ----YFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
D ++ +V N G +D RQ + D V+ ++++D Y + A +F
Sbjct: 104 DDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVF 163
Query: 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118
++ N TI Y K G E+A + R + K+ ++WTA+I G S
Sbjct: 164 DSIRVKN------TISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQS 215
Score = 38.5 bits (88), Expect = 0.018, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPE 62
N +V+ + +V Y G ++ A+ F + ++ + WTAM+ GY + R EAL LF
Sbjct: 138 NDEVVK-SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRI 196
Query: 63 MQTSNI 68
+ N+
Sbjct: 197 LPVKNL 202
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
Query: 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD-------------PFPTIRPDEV 129
+Y KCG A +V +M +D W +++ L ++ +RPD+
Sbjct: 47 VYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDF 106
Query: 130 TYVGVLSACTHNGN 143
+ ++ AC + G+
Sbjct: 107 VFSALVKACANLGS 120
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 45/176 (25%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+++ Y VD AR F ++ E V + AMI GY R NR EAL+LF EMQ ++P+
Sbjct: 170 LINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPN 229
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E T++ +L++ M+ KCG ++ A +
Sbjct: 230 EITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFE 289
Query: 99 KMLRKDKFTWTAMIVGLAISDPF------------PTIRPDEVTYVGVLSACTHNG 142
KM KD W+AMIV A ++PDE+T++G+L+AC+H G
Sbjct: 290 KMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69
T ++ + G +D A F +M +D W+AMI Y + +++ +F M++ N++
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328
Query: 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103
PDE T + +L A + G VE+ ++ +M+ K
Sbjct: 329 PDEITFLGLLNACSH--TGRVEEGRKYFSQMVSK 360
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 45/164 (27%)
Query: 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA--- 81
AR F M E D V++ +M GY R E +LF E+ I PD +T +L A
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 82 ------------------------------YMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111
MY +C DV+ A+ V +++ + AM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 112 IVGLAISD------------PFPTIRPDEVTYVGVLSACTHNGN 143
I G A + ++P+E+T + VLS+C G+
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGS 245
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 45/184 (24%)
Query: 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63
+ + + T +V Y G + AR+ F + ERD LWT++I GY++ + EAL L+ M
Sbjct: 355 RHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRM 414
Query: 64 QTSNIRPDEFTIVRILTA---------------------------------YMYCKCGDV 90
+T+ I P++ T+ +L A MY KCG +
Sbjct: 415 KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSL 474
Query: 91 EKAQRVLRKMLRKDKFTWTAMIVGLAIS-------DPFPT-----IRPDEVTYVGVLSAC 138
E V R+ KD +W AMI GL+ + + F + PD+VT+V ++SAC
Sbjct: 475 EDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISAC 534
Query: 139 THNG 142
+H G
Sbjct: 535 SHKG 538
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 47/182 (25%)
Query: 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFP--- 61
D+ T +V Y G V+ + FA MPER+ W+ M+ GY R EA+ +F
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211
Query: 62 ------------------------------EMQTSNIRPDEFTIVRILTAY--MYCKCGD 89
++ I+ V + A MY KC
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271
Query: 90 VEKAQRVLRKMLRKDKFTWTAMIVGLA-----------ISDPFPT-IRPDEVTYVGVLSA 137
+ +A ++ ++ TW+AM+ G + S F I+P E T VGVL+A
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331
Query: 138 CT 139
C+
Sbjct: 332 CS 333
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 4 KDVISWTDIVSGYINRGQVD---IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLF 60
KDV+SW +++GY G + Q F +M +D + + G + ++ T+
Sbjct: 78 KDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVG 137
Query: 61 PEMQTSNIRPDEFTIVRILTAY--MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
+ ++ F + + T+ MYCK G VE +V M ++ +TW+ M+ G A
Sbjct: 138 RQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYA 195
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 45/173 (26%)
Query: 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD 71
+V+ Y ++ A + F +R+ + W+AM+ GY + EA+ LF M ++ I+P
Sbjct: 262 LVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPS 321
Query: 72 EFTIVRILTAY---------------------------------MYCKCGDVEKAQRVLR 98
E+TIV +L A MY K G + A++
Sbjct: 322 EYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFD 381
Query: 99 KMLRKDKFTWTAMIVG----------LAISDPFPT--IRPDEVTYVGVLSACT 139
+ +D WT++I G L + T I P++ T VL AC+
Sbjct: 382 CLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACS 434
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116
Y KCG + KA + ++ KD +W ++I G +
Sbjct: 59 YAKCGKLAKAHSIFNAIICKDVVSWNSLITGYS 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,621,585
Number of Sequences: 539616
Number of extensions: 2074343
Number of successful extensions: 9211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 5909
Number of HSP's gapped (non-prelim): 2197
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)