Query 035927
Match_columns 153
No_of_seqs 108 out of 1441
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:44:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.2E-32 4.8E-37 219.9 16.1 150 3-152 256-450 (697)
2 PLN03081 pentatricopeptide (PP 100.0 7E-30 1.5E-34 205.5 16.1 150 3-152 155-349 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 8.6E-30 1.9E-34 208.9 14.8 150 3-152 219-413 (857)
4 PLN03218 maturation of RBCL 1; 100.0 9E-29 1.9E-33 204.1 16.3 147 3-151 469-637 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 7.1E-29 1.5E-33 203.5 14.8 149 3-151 320-512 (857)
6 PLN03218 maturation of RBCL 1; 100.0 1.9E-28 4.2E-33 202.2 16.5 149 3-151 576-777 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.7 2.5E-16 5.4E-21 85.7 6.5 50 35-86 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 9.4E-15 2E-19 79.4 5.3 50 70-140 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.2 5.6E-10 1.2E-14 84.4 13.3 59 8-66 109-170 (389)
10 PF12854 PPR_1: PPR repeat 99.2 5.1E-11 1.1E-15 59.2 4.2 34 66-101 1-34 (34)
11 PF12854 PPR_1: PPR repeat 99.2 4.5E-11 9.7E-16 59.4 4.0 31 3-33 4-34 (34)
12 PRK11788 tetratricopeptide rep 99.1 2.1E-09 4.5E-14 81.3 13.6 145 4-151 139-305 (389)
13 KOG4422 Uncharacterized conser 99.1 1.3E-09 2.9E-14 82.0 11.0 143 3-151 204-379 (625)
14 KOG4422 Uncharacterized conser 99.1 1.4E-09 3.1E-14 81.8 11.1 113 28-146 198-330 (625)
15 TIGR02917 PEP_TPR_lipo putativ 99.0 4E-08 8.7E-13 80.5 15.3 112 8-122 569-686 (899)
16 TIGR02917 PEP_TPR_lipo putativ 99.0 3.2E-08 6.9E-13 81.1 14.6 94 4-100 599-695 (899)
17 TIGR00756 PPR pentatricopeptid 98.9 2.5E-09 5.5E-14 53.0 4.2 35 38-72 1-35 (35)
18 PF13812 PPR_3: Pentatricopept 98.8 8.2E-09 1.8E-13 51.0 4.1 33 38-70 2-34 (34)
19 TIGR02521 type_IV_pilW type IV 98.7 2.6E-06 5.7E-11 59.0 14.7 143 6-151 31-192 (234)
20 TIGR02521 type_IV_pilW type IV 98.7 2.7E-06 5.8E-11 58.9 14.1 145 5-151 64-226 (234)
21 PF01535 PPR: PPR repeat; Int 98.6 5E-08 1.1E-12 47.0 3.3 30 39-68 2-31 (31)
22 PRK15174 Vi polysaccharide exp 98.5 9.8E-06 2.1E-10 65.9 15.2 143 6-151 144-307 (656)
23 TIGR00990 3a0801s09 mitochondr 98.5 1E-05 2.2E-10 65.3 14.9 144 6-152 331-491 (615)
24 PF13429 TPR_15: Tetratricopep 98.4 9.3E-07 2E-11 64.4 7.5 145 4-152 108-272 (280)
25 PRK15174 Vi polysaccharide exp 98.4 2.1E-05 4.5E-10 64.0 13.9 136 13-151 219-375 (656)
26 TIGR00990 3a0801s09 mitochondr 98.4 2.2E-05 4.8E-10 63.3 13.8 145 5-152 398-566 (615)
27 PF13429 TPR_15: Tetratricopep 98.3 5.7E-07 1.2E-11 65.5 4.0 144 6-152 78-238 (280)
28 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.2E-10 59.7 12.4 121 8-152 171-292 (395)
29 PRK09782 bacteriophage N4 rece 98.3 2.1E-05 4.6E-10 66.3 13.0 97 51-151 590-700 (987)
30 PF10037 MRP-S27: Mitochondria 98.3 7.2E-06 1.6E-10 62.9 9.4 112 5-118 65-186 (429)
31 TIGR00756 PPR pentatricopeptid 98.3 1.1E-06 2.5E-11 43.1 3.2 29 73-103 1-29 (35)
32 PF01535 PPR: PPR repeat; Int 98.3 8.1E-07 1.8E-11 42.6 2.5 29 7-35 1-29 (31)
33 PF08579 RPM2: Mitochondrial r 98.3 1.4E-05 3E-10 50.1 8.5 82 39-141 27-117 (120)
34 PF13812 PPR_3: Pentatricopept 98.2 1.8E-06 3.9E-11 42.3 3.0 30 72-103 1-30 (34)
35 PRK09782 bacteriophage N4 rece 98.2 0.00013 2.8E-09 61.8 15.3 145 4-152 507-667 (987)
36 KOG4318 Bicoid mRNA stability 98.1 2.3E-05 5.1E-10 64.0 9.3 76 69-146 201-289 (1088)
37 PRK10747 putative protoheme IX 98.1 0.0001 2.2E-09 56.6 12.1 139 8-152 231-385 (398)
38 PRK12370 invasion protein regu 98.1 0.00015 3.3E-09 57.9 13.5 135 5-143 337-490 (553)
39 PRK11189 lipoprotein NlpI; Pro 98.1 0.00046 1E-08 50.8 14.8 143 5-152 97-260 (296)
40 PF06239 ECSIT: Evolutionarily 98.1 6.1E-05 1.3E-09 52.6 9.1 104 22-144 30-154 (228)
41 TIGR02552 LcrH_SycD type III s 98.0 0.00019 4.2E-09 46.2 11.0 96 5-103 16-114 (135)
42 KOG1126 DNA-binding cell divis 98.0 2E-05 4.3E-10 62.3 7.1 140 9-152 356-547 (638)
43 PF09976 TPR_21: Tetratricopep 98.0 0.00024 5.2E-09 46.8 11.5 122 7-152 13-142 (145)
44 PF08579 RPM2: Mitochondrial r 98.0 6.7E-05 1.4E-09 47.1 7.8 75 8-82 27-114 (120)
45 PRK15179 Vi polysaccharide bio 98.0 0.00022 4.7E-09 58.3 12.9 124 4-151 84-211 (694)
46 PRK15359 type III secretion sy 97.9 0.00065 1.4E-08 44.7 12.0 92 8-102 26-120 (144)
47 KOG1840 Kinesin light chain [C 97.9 0.00037 8E-09 54.9 11.9 144 6-151 283-473 (508)
48 PRK10049 pgaA outer membrane p 97.9 0.0008 1.7E-08 55.8 14.5 139 9-152 18-174 (765)
49 KOG4318 Bicoid mRNA stability 97.9 2.7E-05 5.8E-10 63.7 5.6 86 58-146 11-101 (1088)
50 PRK11447 cellulose synthase su 97.9 0.00098 2.1E-08 57.7 15.2 138 11-152 578-735 (1157)
51 TIGR03302 OM_YfiO outer membra 97.9 0.00093 2E-08 47.2 12.9 147 4-152 31-227 (235)
52 PRK10049 pgaA outer membrane p 97.9 0.00057 1.2E-08 56.7 13.3 137 13-151 279-450 (765)
53 PRK15359 type III secretion sy 97.9 0.00032 6.9E-09 46.2 9.7 103 26-151 13-115 (144)
54 PRK11189 lipoprotein NlpI; Pro 97.9 0.00075 1.6E-08 49.8 12.6 93 7-103 65-161 (296)
55 PF04733 Coatomer_E: Coatomer 97.9 0.00015 3.3E-09 53.3 8.7 114 8-144 133-251 (290)
56 PF06239 ECSIT: Evolutionarily 97.8 0.00029 6.4E-09 49.2 9.5 96 3-100 44-165 (228)
57 PF04733 Coatomer_E: Coatomer 97.8 0.00095 2.1E-08 49.1 12.5 114 13-151 109-224 (290)
58 PRK11447 cellulose synthase su 97.8 0.0015 3.2E-08 56.6 14.9 69 84-152 613-695 (1157)
59 PF12921 ATP13: Mitochondrial 97.8 0.0012 2.7E-08 42.5 11.2 78 5-82 1-98 (126)
60 PF12895 Apc3: Anaphase-promot 97.8 4.6E-05 1E-09 45.4 4.2 77 19-99 2-83 (84)
61 TIGR00540 hemY_coli hemY prote 97.8 0.00061 1.3E-08 52.5 11.1 125 5-152 262-394 (409)
62 PRK12370 invasion protein regu 97.7 0.0011 2.5E-08 53.0 12.5 113 5-119 371-489 (553)
63 PRK10370 formate-dependent nit 97.7 0.0011 2.3E-08 46.2 10.8 97 3-103 70-173 (198)
64 cd00189 TPR Tetratricopeptide 97.7 0.00066 1.4E-08 39.5 8.7 92 8-102 2-96 (100)
65 PRK10747 putative protoheme IX 97.7 0.0041 8.8E-08 47.8 14.6 82 17-102 129-215 (398)
66 COG3071 HemY Uncharacterized e 97.7 0.0022 4.8E-08 48.4 12.3 144 3-152 184-385 (400)
67 PRK14574 hmsH outer membrane p 97.6 0.0013 2.8E-08 54.9 12.0 138 11-151 73-226 (822)
68 TIGR02552 LcrH_SycD type III s 97.6 0.00094 2E-08 43.0 9.0 93 36-151 16-108 (135)
69 PRK14574 hmsH outer membrane p 97.6 0.0093 2E-07 50.0 15.8 138 9-151 38-192 (822)
70 PRK10370 formate-dependent nit 97.6 0.0025 5.4E-08 44.3 10.9 66 36-103 72-139 (198)
71 PF05843 Suf: Suppressor of fo 97.6 0.00075 1.6E-08 49.4 8.5 121 7-151 2-130 (280)
72 TIGR00540 hemY_coli hemY prote 97.5 0.0053 1.2E-07 47.3 13.5 141 12-152 159-359 (409)
73 KOG1840 Kinesin light chain [C 97.5 0.0019 4.1E-08 51.0 11.1 143 8-152 201-391 (508)
74 KOG1155 Anaphase-promoting com 97.5 0.00082 1.8E-08 51.8 8.3 142 7-151 331-489 (559)
75 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0022 4.7E-08 40.0 9.3 95 7-103 3-105 (119)
76 KOG2003 TPR repeat-containing 97.5 0.0026 5.7E-08 49.3 11.1 131 18-152 536-684 (840)
77 PF10037 MRP-S27: Mitochondria 97.5 0.00099 2.1E-08 51.4 8.9 75 8-82 105-183 (429)
78 KOG1129 TPR repeat-containing 97.5 0.0022 4.7E-08 47.8 9.7 116 4-122 254-375 (478)
79 COG5010 TadD Flp pilus assembl 97.4 0.013 2.9E-07 42.0 13.2 116 4-122 98-219 (257)
80 KOG1126 DNA-binding cell divis 97.4 0.0019 4.2E-08 51.5 9.7 144 5-151 420-614 (638)
81 cd00189 TPR Tetratricopeptide 97.4 0.0022 4.7E-08 37.2 7.8 90 39-151 2-91 (100)
82 PF12921 ATP13: Mitochondrial 97.4 0.0037 7.9E-08 40.3 8.9 66 36-103 1-81 (126)
83 COG3063 PilF Tfp pilus assembl 97.3 0.0099 2.2E-07 42.1 11.2 141 8-151 37-196 (250)
84 PF04840 Vps16_C: Vps16, C-ter 97.3 0.0076 1.7E-07 45.0 11.2 87 8-102 179-265 (319)
85 CHL00033 ycf3 photosystem I as 97.3 0.016 3.4E-07 38.9 11.8 89 7-98 36-137 (168)
86 KOG2003 TPR repeat-containing 97.3 0.017 3.6E-07 45.0 12.9 135 7-144 559-710 (840)
87 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0062 1.3E-07 37.9 9.2 95 38-151 3-99 (119)
88 PF14559 TPR_19: Tetratricopep 97.3 0.0028 6E-08 35.7 6.9 52 48-103 2-54 (68)
89 KOG4626 O-linked N-acetylgluco 97.2 0.0094 2E-07 48.0 11.5 141 7-151 321-479 (966)
90 KOG4626 O-linked N-acetylgluco 97.2 0.009 1.9E-07 48.1 11.4 61 6-66 116-179 (966)
91 PF03704 BTAD: Bacterial trans 97.2 0.002 4.3E-08 42.2 6.8 66 9-74 65-138 (146)
92 COG3063 PilF Tfp pilus assembl 97.2 0.041 8.8E-07 39.1 13.3 142 5-148 68-227 (250)
93 PF14559 TPR_19: Tetratricopep 97.2 0.0013 2.9E-08 37.1 4.8 61 17-79 2-65 (68)
94 cd05804 StaR_like StaR_like; a 97.2 0.012 2.7E-07 43.9 11.4 135 14-152 51-210 (355)
95 COG4783 Putative Zn-dependent 97.1 0.014 3E-07 45.4 11.3 125 17-150 317-447 (484)
96 PRK15363 pathogenicity island 97.1 0.026 5.7E-07 37.7 11.3 74 26-102 23-97 (157)
97 COG2956 Predicted N-acetylgluc 97.1 0.012 2.7E-07 43.7 10.5 100 8-110 71-177 (389)
98 PLN03088 SGT1, suppressor of 97.1 0.012 2.7E-07 44.5 11.1 87 13-102 9-98 (356)
99 PRK02603 photosystem I assembl 97.1 0.032 6.9E-07 37.7 12.1 78 8-89 37-121 (172)
100 PF13432 TPR_16: Tetratricopep 97.1 0.0026 5.7E-08 35.6 5.8 56 44-102 4-59 (65)
101 KOG1915 Cell cycle control pro 97.1 0.032 7E-07 43.7 12.7 90 9-102 144-235 (677)
102 KOG3081 Vesicle coat complex C 97.1 0.013 2.7E-07 42.5 9.8 50 51-103 187-236 (299)
103 PF12895 Apc3: Anaphase-promot 97.0 0.0012 2.5E-08 39.2 3.9 79 50-152 2-82 (84)
104 PF09976 TPR_21: Tetratricopep 97.0 0.0075 1.6E-07 39.6 8.0 84 12-99 54-143 (145)
105 COG5010 TadD Flp pilus assembl 97.0 0.019 4E-07 41.3 10.2 99 2-103 130-231 (257)
106 KOG2076 RNA polymerase III tra 96.9 0.027 6E-07 46.7 11.9 128 5-146 413-544 (895)
107 PF12688 TPR_5: Tetratrico pep 96.9 0.041 8.9E-07 35.1 10.5 103 12-117 7-118 (120)
108 PRK15179 Vi polysaccharide bio 96.9 0.057 1.2E-06 44.6 13.3 105 7-114 121-231 (694)
109 KOG3941 Intermediate in Toll s 96.9 0.019 4.1E-07 42.1 9.4 99 24-144 52-174 (406)
110 KOG3081 Vesicle coat complex C 96.8 0.012 2.5E-07 42.6 8.1 126 14-144 116-257 (299)
111 KOG1129 TPR repeat-containing 96.8 0.0082 1.8E-07 44.8 7.2 137 10-151 227-381 (478)
112 KOG0985 Vesicle coat protein c 96.7 0.064 1.4E-06 45.7 12.4 136 6-147 1104-1268(1666)
113 PF13432 TPR_16: Tetratricopep 96.7 0.0075 1.6E-07 33.7 5.4 55 12-66 3-60 (65)
114 PF05843 Suf: Suppressor of fo 96.7 0.0089 1.9E-07 43.8 6.8 92 38-152 2-94 (280)
115 cd05804 StaR_like StaR_like; a 96.6 0.047 1E-06 40.8 10.8 92 9-102 117-214 (355)
116 PF13414 TPR_11: TPR repeat; P 96.6 0.013 2.8E-07 33.1 5.8 62 37-101 3-65 (69)
117 PRK15363 pathogenicity island 96.6 0.063 1.4E-06 35.9 9.6 89 11-102 40-131 (157)
118 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.056 1.2E-06 41.6 10.7 92 6-101 200-295 (395)
119 KOG0547 Translocase of outer m 96.5 0.04 8.6E-07 43.2 9.6 141 8-152 396-561 (606)
120 PLN03088 SGT1, suppressor of 96.5 0.025 5.5E-07 42.9 8.6 74 45-122 10-87 (356)
121 KOG1070 rRNA processing protei 96.5 0.036 7.9E-07 48.3 10.1 143 7-152 1498-1658(1710)
122 PF12569 NARP1: NMDA receptor- 96.5 0.17 3.7E-06 40.4 13.2 127 3-151 189-328 (517)
123 PF13414 TPR_11: TPR repeat; P 96.4 0.015 3.3E-07 32.7 5.6 61 5-65 2-66 (69)
124 PF04840 Vps16_C: Vps16, C-ter 96.4 0.038 8.3E-07 41.3 8.7 84 3-100 205-288 (319)
125 CHL00033 ycf3 photosystem I as 96.3 0.12 2.5E-06 34.7 10.3 65 37-103 35-101 (168)
126 KOG3785 Uncharacterized conser 96.3 0.061 1.3E-06 40.8 9.4 104 12-115 291-437 (557)
127 KOG4340 Uncharacterized conser 96.3 0.066 1.4E-06 39.7 9.2 141 10-151 148-333 (459)
128 KOG0985 Vesicle coat protein c 96.3 0.089 1.9E-06 44.9 10.9 131 14-152 1056-1218(1666)
129 PF13424 TPR_12: Tetratricopep 96.3 0.014 3.1E-07 33.8 4.9 26 39-64 7-32 (78)
130 KOG3616 Selective LIM binding 96.2 0.036 7.9E-07 45.7 8.3 97 15-122 741-841 (1636)
131 KOG1915 Cell cycle control pro 96.2 0.14 3.1E-06 40.2 11.1 131 19-152 86-231 (677)
132 PF13371 TPR_9: Tetratricopept 96.2 0.021 4.5E-07 32.5 5.2 55 45-102 3-57 (73)
133 KOG3785 Uncharacterized conser 96.2 0.042 9.1E-07 41.6 7.8 59 43-103 399-457 (557)
134 PRK10153 DNA-binding transcrip 96.2 0.2 4.2E-06 40.1 12.1 126 3-151 334-476 (517)
135 KOG3616 Selective LIM binding 96.1 0.077 1.7E-06 43.9 9.4 87 9-104 768-854 (1636)
136 PRK10803 tol-pal system protei 96.0 0.14 3.1E-06 37.2 9.8 94 7-102 144-245 (263)
137 PRK02603 photosystem I assembl 95.9 0.18 3.8E-06 34.0 9.6 82 36-119 34-120 (172)
138 PRK10803 tol-pal system protei 95.9 0.12 2.6E-06 37.6 9.0 94 37-151 143-240 (263)
139 PF03704 BTAD: Bacterial trans 95.9 0.079 1.7E-06 34.6 7.5 95 5-102 2-124 (146)
140 KOG1155 Anaphase-promoting com 95.9 0.31 6.7E-06 38.2 11.3 114 5-122 363-483 (559)
141 KOG1070 rRNA processing protei 95.8 0.15 3.2E-06 44.8 10.4 146 3-152 1454-1624(1710)
142 PF13424 TPR_12: Tetratricopep 95.8 0.031 6.6E-07 32.3 4.8 55 7-61 6-70 (78)
143 COG3071 HemY Uncharacterized e 95.8 0.63 1.4E-05 35.6 14.0 141 8-151 120-286 (400)
144 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.38 8.3E-06 37.6 11.5 98 4-103 73-195 (453)
145 PF13512 TPR_18: Tetratricopep 95.7 0.35 7.5E-06 31.8 9.9 67 14-81 18-91 (142)
146 COG4783 Putative Zn-dependent 95.7 0.39 8.4E-06 37.6 11.3 93 5-100 339-434 (484)
147 PF12569 NARP1: NMDA receptor- 95.6 0.23 5.1E-06 39.6 10.2 97 6-102 228-333 (517)
148 PF13762 MNE1: Mitochondrial s 95.5 0.18 4E-06 33.3 8.0 82 9-93 42-133 (145)
149 KOG1173 Anaphase-promoting com 95.5 0.098 2.1E-06 41.6 7.7 122 16-139 390-533 (611)
150 KOG2002 TPR-containing nuclear 95.5 0.043 9.2E-07 46.1 6.0 100 20-122 626-733 (1018)
151 PF13371 TPR_9: Tetratricopept 95.5 0.061 1.3E-06 30.5 5.2 60 13-74 2-64 (73)
152 COG3629 DnrI DNA-binding trans 95.4 0.19 4.2E-06 36.9 8.6 74 8-81 155-236 (280)
153 KOG2053 Mitochondrial inherita 95.4 0.14 3E-06 42.8 8.5 120 18-140 21-156 (932)
154 KOG1128 Uncharacterized conser 95.4 0.13 2.9E-06 42.0 8.2 54 9-62 427-482 (777)
155 PRK10866 outer membrane biogen 95.4 0.68 1.5E-05 33.3 13.1 138 12-150 38-234 (243)
156 KOG1125 TPR repeat-containing 95.3 0.1 2.2E-06 41.5 7.2 92 4-100 428-524 (579)
157 KOG1914 mRNA cleavage and poly 95.3 0.69 1.5E-05 37.0 11.5 27 124-150 466-494 (656)
158 COG2956 Predicted N-acetylgluc 95.2 0.94 2E-05 34.1 12.5 52 15-66 116-170 (389)
159 KOG2002 TPR-containing nuclear 95.2 0.55 1.2E-05 39.9 11.4 94 4-101 268-369 (1018)
160 KOG1128 Uncharacterized conser 95.2 0.28 6E-06 40.3 9.5 134 9-151 401-576 (777)
161 TIGR02561 HrpB1_HrpK type III 95.1 0.35 7.5E-06 32.1 8.1 76 39-118 9-89 (153)
162 KOG3941 Intermediate in Toll s 95.0 0.24 5.2E-06 36.6 7.9 96 3-100 64-185 (406)
163 PF12688 TPR_5: Tetratrico pep 95.0 0.55 1.2E-05 30.0 9.2 56 45-102 9-66 (120)
164 KOG1127 TPR repeat-containing 94.9 0.22 4.7E-06 42.4 8.4 114 8-122 494-613 (1238)
165 COG4105 ComL DNA uptake lipopr 94.9 0.99 2.1E-05 32.6 10.8 74 6-81 35-115 (254)
166 PRK14720 transcript cleavage f 94.9 0.32 6.8E-06 41.4 9.3 52 12-64 122-176 (906)
167 PF14938 SNAP: Soluble NSF att 94.8 0.67 1.5E-05 33.9 10.1 91 10-103 118-225 (282)
168 KOG2047 mRNA splicing factor [ 94.7 1.6 3.5E-05 35.8 12.4 108 39-152 140-272 (835)
169 TIGR03302 OM_YfiO outer membra 94.5 0.53 1.2E-05 33.1 8.8 65 35-103 31-99 (235)
170 KOG2376 Signal recognition par 94.4 1 2.2E-05 36.4 10.7 68 84-152 120-199 (652)
171 PF10602 RPN7: 26S proteasome 94.2 1 2.2E-05 30.8 9.3 96 7-102 37-141 (177)
172 KOG2047 mRNA splicing factor [ 94.1 1.3 2.9E-05 36.3 10.7 107 9-117 172-293 (835)
173 PF13525 YfiO: Outer membrane 94.0 1.4 3E-05 30.6 10.1 56 11-66 10-71 (203)
174 KOG1174 Anaphase-promoting com 94.0 2.2 4.7E-05 33.4 11.2 140 7-149 233-389 (564)
175 PRK14720 transcript cleavage f 93.9 0.91 2E-05 38.7 10.0 124 3-151 28-172 (906)
176 PF13176 TPR_7: Tetratricopept 93.9 0.14 3E-06 25.0 3.4 24 40-63 2-25 (36)
177 KOG2076 RNA polymerase III tra 93.8 2.6 5.6E-05 35.7 12.1 133 15-151 148-303 (895)
178 KOG4162 Predicted calmodulin-b 93.6 2.8 6E-05 35.0 11.9 123 7-152 651-778 (799)
179 KOG0547 Translocase of outer m 93.5 0.91 2E-05 36.0 8.8 120 9-152 363-486 (606)
180 KOG1173 Anaphase-promoting com 93.5 0.6 1.3E-05 37.4 7.8 76 5-82 454-532 (611)
181 KOG3060 Uncharacterized conser 93.4 2.2 4.8E-05 31.1 10.4 129 19-150 25-176 (289)
182 PLN03098 LPA1 LOW PSII ACCUMUL 93.3 1.2 2.5E-05 35.0 9.0 63 36-102 74-140 (453)
183 PF10300 DUF3808: Protein of u 93.1 1.1 2.3E-05 35.5 8.9 85 15-101 276-374 (468)
184 KOG0553 TPR repeat-containing 93.0 0.25 5.5E-06 36.4 4.8 69 84-152 91-173 (304)
185 KOG2280 Vacuolar assembly/sort 93.0 1.4 3.1E-05 36.5 9.4 85 10-102 688-772 (829)
186 PLN02789 farnesyltranstransfer 92.9 3 6.6E-05 31.3 11.1 112 8-122 39-159 (320)
187 PF09613 HrpB1_HrpK: Bacterial 92.9 2 4.3E-05 28.9 10.4 51 49-103 22-73 (160)
188 PF13176 TPR_7: Tetratricopept 92.7 0.38 8.2E-06 23.4 4.0 22 9-30 2-23 (36)
189 PF14938 SNAP: Soluble NSF att 92.7 2.3 5E-05 31.1 9.7 62 39-102 116-183 (282)
190 KOG4570 Uncharacterized conser 92.7 0.65 1.4E-05 34.8 6.5 93 7-102 65-163 (418)
191 smart00299 CLH Clathrin heavy 92.4 2 4.3E-05 27.7 11.5 87 6-101 7-96 (140)
192 COG4235 Cytochrome c biogenesi 92.3 3.5 7.5E-05 30.5 10.8 97 4-103 154-256 (287)
193 PF09613 HrpB1_HrpK: Bacterial 92.0 2.4 5.1E-05 28.6 8.2 75 11-90 15-94 (160)
194 PRK10153 DNA-binding transcrip 92.0 3.3 7.1E-05 33.3 10.4 63 36-102 419-481 (517)
195 KOG1174 Anaphase-promoting com 92.0 5 0.00011 31.5 11.7 137 13-151 341-494 (564)
196 KOG2796 Uncharacterized conser 91.9 1.8 3.9E-05 31.8 7.9 91 12-102 183-280 (366)
197 PF09205 DUF1955: Domain of un 91.9 1.6 3.5E-05 28.6 6.9 81 19-103 69-149 (161)
198 KOG1127 TPR repeat-containing 91.7 1.6 3.5E-05 37.5 8.4 95 4-101 524-657 (1238)
199 PRK15331 chaperone protein Sic 91.6 2.5 5.4E-05 28.6 7.9 51 47-100 47-97 (165)
200 COG5107 RNA14 Pre-mRNA 3'-end 91.6 2.8 6E-05 33.2 9.1 90 8-102 399-494 (660)
201 KOG2280 Vacuolar assembly/sort 91.5 5.3 0.00012 33.4 10.9 70 83-152 693-768 (829)
202 PF13374 TPR_10: Tetratricopep 91.3 0.76 1.6E-05 22.5 4.3 27 38-64 3-29 (42)
203 KOG0553 TPR repeat-containing 91.1 4.8 0.0001 29.9 9.6 97 15-114 90-191 (304)
204 PF00637 Clathrin: Region in C 91.0 0.18 3.8E-06 32.8 2.1 120 10-143 11-140 (143)
205 PF11848 DUF3368: Domain of un 91.0 1.2 2.5E-05 23.5 4.9 35 47-81 12-46 (48)
206 KOG2053 Mitochondrial inherita 91.0 3.3 7.1E-05 35.1 9.5 106 8-118 43-157 (932)
207 PF10300 DUF3808: Protein of u 90.5 7.6 0.00016 30.8 12.0 89 10-101 192-294 (468)
208 PF13428 TPR_14: Tetratricopep 90.4 0.76 1.6E-05 23.4 3.8 26 40-65 4-29 (44)
209 PF00637 Clathrin: Region in C 90.4 0.11 2.5E-06 33.7 0.7 94 42-150 12-105 (143)
210 COG3629 DnrI DNA-binding trans 90.3 1.7 3.8E-05 31.9 6.8 62 38-102 154-215 (280)
211 KOG3617 WD40 and TPR repeat-co 90.2 2.7 5.9E-05 35.8 8.3 59 5-65 756-828 (1416)
212 KOG0495 HAT repeat protein [RN 90.1 10 0.00022 31.6 14.1 142 6-150 618-775 (913)
213 KOG4340 Uncharacterized conser 90.0 6.6 0.00014 29.5 9.4 142 8-152 12-168 (459)
214 PF13374 TPR_10: Tetratricopep 89.7 0.83 1.8E-05 22.4 3.5 27 6-32 2-28 (42)
215 KOG0550 Molecular chaperone (D 89.6 3.6 7.8E-05 32.1 8.1 105 16-122 179-304 (486)
216 PF02284 COX5A: Cytochrome c o 89.3 2.1 4.5E-05 26.6 5.5 47 55-103 28-74 (108)
217 PRK10564 maltose regulon perip 89.0 1.2 2.7E-05 32.9 5.2 45 36-80 256-300 (303)
218 COG1729 Uncharacterized protei 88.9 6.8 0.00015 28.6 8.8 59 39-102 144-206 (262)
219 PF13428 TPR_14: Tetratricopep 88.9 1.3 2.8E-05 22.5 4.0 26 76-103 5-30 (44)
220 KOG4570 Uncharacterized conser 88.7 0.82 1.8E-05 34.3 4.1 82 67-150 59-157 (418)
221 KOG1125 TPR repeat-containing 88.7 1.8 3.9E-05 34.8 6.2 139 7-151 354-521 (579)
222 cd00923 Cyt_c_Oxidase_Va Cytoc 88.6 2.7 5.8E-05 25.9 5.6 57 55-113 25-84 (103)
223 KOG0495 HAT repeat protein [RN 87.9 15 0.00032 30.7 12.0 140 7-150 517-673 (913)
224 COG5107 RNA14 Pre-mRNA 3'-end 87.7 4.4 9.6E-05 32.1 7.6 76 4-81 40-118 (660)
225 PRK04841 transcriptional regul 87.7 8 0.00017 32.9 9.9 91 9-101 494-600 (903)
226 COG1729 Uncharacterized protei 87.6 6.2 0.00013 28.8 7.9 92 8-103 144-244 (262)
227 PRK15331 chaperone protein Sic 87.2 7.2 0.00016 26.4 7.9 86 14-103 45-134 (165)
228 TIGR02561 HrpB1_HrpK type III 87.0 7 0.00015 26.1 7.7 71 14-89 18-93 (153)
229 KOG3060 Uncharacterized conser 86.9 10 0.00022 27.8 11.2 111 9-122 55-171 (289)
230 TIGR02508 type_III_yscG type I 86.8 5.6 0.00012 24.8 7.0 75 22-104 21-98 (115)
231 smart00299 CLH Clathrin heavy 86.7 6.4 0.00014 25.3 9.4 81 36-122 6-86 (140)
232 KOG2041 WD40 repeat protein [G 86.7 4.4 9.6E-05 33.9 7.3 120 20-151 748-875 (1189)
233 KOG0543 FKBP-type peptidyl-pro 86.4 13 0.00028 28.8 9.3 86 14-102 216-319 (397)
234 COG4700 Uncharacterized protei 86.4 9.3 0.0002 26.8 11.9 95 4-102 87-188 (251)
235 PLN02789 farnesyltranstransfer 86.3 12 0.00026 28.1 13.2 108 8-118 73-189 (320)
236 KOG0548 Molecular co-chaperone 86.2 12 0.00025 30.2 9.2 114 9-122 260-409 (539)
237 KOG1156 N-terminal acetyltrans 86.2 7.8 0.00017 31.9 8.4 95 3-100 366-465 (700)
238 KOG1914 mRNA cleavage and poly 85.8 12 0.00027 30.3 9.2 64 36-102 365-429 (656)
239 COG3118 Thioredoxin domain-con 85.0 13 0.00028 27.7 8.5 53 47-102 144-196 (304)
240 KOG2376 Signal recognition par 85.0 20 0.00043 29.4 11.6 111 8-118 378-505 (652)
241 PF13431 TPR_17: Tetratricopep 84.9 1.2 2.7E-05 21.4 2.4 23 127-149 12-34 (34)
242 PF13281 DUF4071: Domain of un 84.6 16 0.00036 28.2 14.0 90 11-100 146-252 (374)
243 PRK10866 outer membrane biogen 83.4 14 0.00031 26.5 11.7 82 36-117 31-116 (243)
244 PF13934 ELYS: Nuclear pore co 83.4 14 0.0003 26.3 9.5 103 8-116 78-183 (226)
245 PF13170 DUF4003: Protein of u 83.3 2.9 6.2E-05 31.1 4.7 76 36-114 59-150 (297)
246 COG4785 NlpI Lipoprotein NlpI, 83.3 15 0.00032 26.5 9.6 144 6-153 99-262 (297)
247 COG4700 Uncharacterized protei 83.2 13 0.00029 26.1 8.9 66 35-102 87-152 (251)
248 PF08311 Mad3_BUB1_I: Mad3/BUB 83.2 9.7 0.00021 24.4 8.5 43 55-99 81-124 (126)
249 TIGR03504 FimV_Cterm FimV C-te 82.7 3.5 7.6E-05 21.3 3.6 25 43-67 5-29 (44)
250 PF07721 TPR_4: Tetratricopept 82.6 3.2 7E-05 18.4 3.3 20 11-30 6-25 (26)
251 PF11663 Toxin_YhaV: Toxin wit 82.5 1.8 3.9E-05 28.2 3.0 30 50-81 108-137 (140)
252 COG4455 ImpE Protein of avirul 82.5 13 0.00029 26.7 7.4 74 40-117 4-84 (273)
253 PF04053 Coatomer_WDAD: Coatom 82.4 23 0.00049 28.1 10.0 81 6-102 295-375 (443)
254 KOG2610 Uncharacterized conser 82.1 21 0.00045 27.5 9.4 133 19-152 116-271 (491)
255 KOG1156 N-terminal acetyltrans 81.7 29 0.00062 28.8 10.5 45 37-81 143-188 (700)
256 PF03745 DUF309: Domain of unk 81.0 7.5 0.00016 21.6 5.7 50 48-97 10-62 (62)
257 COG3947 Response regulator con 80.9 18 0.00039 27.1 7.9 50 14-63 287-339 (361)
258 PF13929 mRNA_stabil: mRNA sta 80.6 21 0.00046 26.5 12.8 101 20-122 142-255 (292)
259 COG4455 ImpE Protein of avirul 80.5 11 0.00023 27.1 6.4 74 8-81 3-81 (273)
260 PF00515 TPR_1: Tetratricopept 80.3 4.6 0.0001 18.8 4.2 27 39-65 3-29 (34)
261 KOG4555 TPR repeat-containing 79.5 15 0.00033 24.2 8.2 87 15-102 52-143 (175)
262 TIGR02508 type_III_yscG type I 79.5 13 0.00027 23.3 7.8 61 13-76 46-106 (115)
263 PF11846 DUF3366: Domain of un 79.2 12 0.00026 25.6 6.5 53 48-102 119-172 (193)
264 PF07079 DUF1347: Protein of u 79.0 27 0.00059 27.9 8.6 80 38-118 78-180 (549)
265 PF13181 TPR_8: Tetratricopept 78.6 5.3 0.00011 18.5 3.6 25 40-64 4-28 (34)
266 PF14689 SPOB_a: Sensor_kinase 78.6 4.5 9.9E-05 22.5 3.5 45 21-65 5-51 (62)
267 COG1747 Uncharacterized N-term 78.6 24 0.00052 28.7 8.3 142 5-151 65-228 (711)
268 PF13525 YfiO: Outer membrane 78.5 19 0.00042 24.9 8.9 103 44-148 12-130 (203)
269 KOG4162 Predicted calmodulin-b 78.4 40 0.00088 28.5 10.6 96 5-101 322-421 (799)
270 PF12796 Ank_2: Ankyrin repeat 78.0 11 0.00024 21.8 5.4 77 14-99 2-81 (89)
271 KOG2066 Vacuolar assembly/sort 77.6 44 0.00095 28.5 10.2 135 8-151 394-528 (846)
272 PF10602 RPN7: 26S proteasome 77.5 14 0.0003 25.2 6.3 64 37-102 36-101 (177)
273 KOG3617 WD40 and TPR repeat-co 76.5 7.9 0.00017 33.2 5.5 138 5-152 725-882 (1416)
274 KOG0543 FKBP-type peptidyl-pro 75.9 35 0.00077 26.5 8.6 92 7-101 258-353 (397)
275 PF07079 DUF1347: Protein of u 75.9 39 0.00085 27.0 9.2 121 16-141 16-180 (549)
276 PF09205 DUF1955: Domain of un 75.6 20 0.00044 23.6 9.3 63 7-69 87-152 (161)
277 PF07163 Pex26: Pex26 protein; 75.3 31 0.00068 25.7 9.6 90 10-99 87-183 (309)
278 PF11207 DUF2989: Protein of u 75.3 26 0.00056 24.6 7.3 77 54-149 123-199 (203)
279 PF11846 DUF3366: Domain of un 75.2 17 0.00037 24.9 6.3 33 34-66 141-173 (193)
280 cd00923 Cyt_c_Oxidase_Va Cytoc 74.8 8.3 0.00018 23.8 4.0 47 34-81 39-85 (103)
281 PF09670 Cas_Cas02710: CRISPR- 73.9 39 0.00084 26.1 10.9 62 40-103 135-198 (379)
282 KOG4567 GTPase-activating prot 73.8 34 0.00073 25.9 7.6 59 57-118 263-321 (370)
283 PF07035 Mic1: Colon cancer-as 73.6 24 0.00053 23.9 6.5 72 25-102 77-148 (167)
284 PF02284 COX5A: Cytochrome c o 73.2 7.3 0.00016 24.2 3.6 73 8-81 10-88 (108)
285 KOG0548 Molecular co-chaperone 72.9 18 0.00039 29.1 6.4 87 14-104 10-100 (539)
286 PRK04841 transcriptional regul 72.8 60 0.0013 27.8 13.9 141 9-151 576-754 (903)
287 PF04097 Nic96: Nup93/Nic96; 72.8 14 0.00031 30.4 6.2 85 13-102 265-355 (613)
288 PF07719 TPR_2: Tetratricopept 71.9 8.5 0.00018 17.6 4.2 23 42-64 6-28 (34)
289 PF13174 TPR_6: Tetratricopept 71.5 6.4 0.00014 17.9 2.6 21 45-65 8-28 (33)
290 COG4649 Uncharacterized protei 70.7 33 0.00071 23.9 9.8 63 37-101 59-121 (221)
291 COG4235 Cytochrome c biogenesi 70.6 42 0.0009 25.0 9.7 83 36-120 155-242 (287)
292 PF10255 Paf67: RNA polymerase 70.2 48 0.001 26.0 8.1 89 11-100 80-190 (404)
293 KOG2796 Uncharacterized conser 69.9 43 0.00094 24.9 8.4 65 36-102 176-240 (366)
294 PF14669 Asp_Glu_race_2: Putat 69.7 8.1 0.00018 27.1 3.5 23 11-33 137-159 (233)
295 KOG1920 IkappaB kinase complex 69.0 17 0.00037 32.2 5.9 82 19-100 864-978 (1265)
296 KOG2908 26S proteasome regulat 68.6 51 0.0011 25.3 8.9 82 11-93 80-176 (380)
297 PF04097 Nic96: Nup93/Nic96; 68.4 48 0.001 27.4 8.3 90 12-101 420-532 (613)
298 KOG0624 dsRNA-activated protei 67.9 55 0.0012 25.4 11.6 59 7-65 190-251 (504)
299 PF04124 Dor1: Dor1-like famil 67.6 33 0.00071 26.0 6.8 42 40-81 109-151 (338)
300 COG2178 Predicted RNA-binding 67.5 33 0.00071 24.1 6.1 95 7-102 30-149 (204)
301 PF02847 MA3: MA3 domain; Int 66.9 19 0.0004 22.2 4.6 60 9-68 5-68 (113)
302 smart00028 TPR Tetratricopepti 66.4 9.7 0.00021 16.1 2.9 25 40-64 4-28 (34)
303 COG5108 RPO41 Mitochondrial DN 66.0 43 0.00094 28.3 7.4 73 10-82 32-113 (1117)
304 PF10366 Vps39_1: Vacuolar sor 65.9 30 0.00064 21.6 8.6 55 10-65 3-67 (108)
305 KOG2114 Vacuolar assembly/sort 65.4 38 0.00082 29.1 7.1 70 9-78 708-781 (933)
306 KOG1147 Glutamyl-tRNA syntheta 65.1 1.7 3.6E-05 35.0 -0.5 51 58-108 254-337 (712)
307 KOG0624 dsRNA-activated protei 64.8 64 0.0014 25.0 11.1 90 11-103 43-135 (504)
308 PF11123 DNA_Packaging_2: DNA 64.5 26 0.00056 20.4 4.5 31 21-51 12-45 (82)
309 PF09454 Vps23_core: Vps23 cor 64.0 24 0.00052 19.9 4.4 47 34-81 5-51 (65)
310 PF13762 MNE1: Mitochondrial s 64.0 40 0.00086 22.4 8.6 84 37-141 39-128 (145)
311 PF11768 DUF3312: Protein of u 63.2 82 0.0018 25.7 8.6 58 9-66 411-473 (545)
312 KOG1538 Uncharacterized conser 62.9 44 0.00096 28.1 6.9 78 14-102 724-801 (1081)
313 KOG4077 Cytochrome c oxidase, 62.8 30 0.00065 22.6 4.9 46 56-103 68-113 (149)
314 KOG1166 Mitotic checkpoint ser 62.2 46 0.001 29.2 7.2 64 49-113 90-153 (974)
315 COG5108 RPO41 Mitochondrial DN 61.8 37 0.00081 28.6 6.3 72 42-115 33-113 (1117)
316 PF02259 FAT: FAT domain; Int 61.5 42 0.00092 24.8 6.5 63 3-65 143-212 (352)
317 PF04053 Coatomer_WDAD: Coatom 61.4 81 0.0018 25.0 11.0 77 12-101 324-400 (443)
318 PF11207 DUF2989: Protein of u 60.0 58 0.0013 22.9 8.1 69 23-94 123-198 (203)
319 PRK10564 maltose regulon perip 59.7 16 0.00035 27.3 3.7 30 4-33 254-284 (303)
320 smart00777 Mad3_BUB1_I Mad3/BU 59.6 45 0.00097 21.5 8.9 44 54-99 80-124 (125)
321 PF13929 mRNA_stabil: mRNA sta 59.2 73 0.0016 23.8 10.4 64 34-99 199-263 (292)
322 COG3947 Response regulator con 58.7 55 0.0012 24.7 6.3 58 40-100 282-339 (361)
323 PF02847 MA3: MA3 domain; Int 58.5 40 0.00087 20.6 6.1 75 41-118 6-81 (113)
324 COG3898 Uncharacterized membra 58.2 92 0.002 24.6 11.8 90 9-101 191-290 (531)
325 PF10475 DUF2450: Protein of u 57.9 74 0.0016 23.5 7.1 29 37-65 127-155 (291)
326 PF04184 ST7: ST7 protein; In 57.1 37 0.00081 27.4 5.5 47 17-63 270-321 (539)
327 cd07153 Fur_like Ferric uptake 56.8 39 0.00085 20.8 4.8 47 43-91 6-52 (116)
328 PF09477 Type_III_YscG: Bacter 56.8 48 0.001 20.9 6.3 87 19-113 19-108 (116)
329 PRK11906 transcriptional regul 56.3 1E+02 0.0022 24.6 9.6 61 36-100 337-398 (458)
330 COG4105 ComL DNA uptake lipopr 55.0 81 0.0018 23.1 9.4 83 37-122 35-123 (254)
331 PF13170 DUF4003: Protein of u 54.7 88 0.0019 23.4 8.2 78 22-103 119-211 (297)
332 PF01475 FUR: Ferric uptake re 54.4 30 0.00066 21.6 4.0 48 42-91 12-59 (120)
333 PF07035 Mic1: Colon cancer-as 52.4 72 0.0016 21.7 12.7 90 4-102 27-117 (167)
334 PF10366 Vps39_1: Vacuolar sor 52.4 20 0.00043 22.4 2.8 28 7-34 40-67 (108)
335 TIGR01914 cas_Csa4 CRISPR-asso 52.2 98 0.0021 23.7 6.7 65 16-81 286-350 (354)
336 PF11817 Foie-gras_1: Foie gra 51.8 50 0.0011 23.7 5.2 76 23-100 162-244 (247)
337 KOG2908 26S proteasome regulat 51.7 1.1E+02 0.0024 23.6 8.1 54 49-102 87-143 (380)
338 cd08789 CARD_IPS-1_RIG-I Caspa 51.4 50 0.0011 19.5 4.8 65 24-95 19-83 (84)
339 KOG4648 Uncharacterized conser 51.3 12 0.00026 28.8 1.9 63 83-145 106-175 (536)
340 cd08819 CARD_MDA5_2 Caspase ac 51.0 53 0.0012 19.8 4.4 64 25-95 21-87 (88)
341 PF04184 ST7: ST7 protein; In 50.8 1.4E+02 0.0029 24.4 8.8 69 43-113 265-339 (539)
342 COG2976 Uncharacterized protei 50.8 86 0.0019 22.1 8.2 90 9-103 57-155 (207)
343 smart00804 TAP_C C-terminal do 50.0 19 0.0004 20.2 2.2 21 52-72 40-61 (63)
344 cd00280 TRFH Telomeric Repeat 50.0 87 0.0019 21.9 7.1 66 53-118 85-156 (200)
345 PF13512 TPR_18: Tetratricopep 49.8 74 0.0016 21.0 9.3 80 37-119 11-96 (142)
346 COG4003 Uncharacterized protei 49.5 37 0.00079 20.3 3.4 33 36-68 29-62 (98)
347 KOG0403 Neoplastic transformat 49.3 1.4E+02 0.003 24.1 8.1 99 41-142 513-616 (645)
348 PF02607 B12-binding_2: B12 bi 48.9 49 0.0011 18.7 6.0 33 49-81 13-45 (79)
349 KOG1538 Uncharacterized conser 48.4 82 0.0018 26.7 6.2 87 9-100 559-658 (1081)
350 COG3898 Uncharacterized membra 47.3 1.4E+02 0.0031 23.6 8.9 80 19-101 133-215 (531)
351 PF10579 Rapsyn_N: Rapsyn N-te 47.0 60 0.0013 19.2 4.6 46 49-96 18-65 (80)
352 PF09986 DUF2225: Uncharacteri 46.4 93 0.002 22.0 5.8 50 53-103 141-194 (214)
353 KOG0991 Replication factor C, 46.2 1.2E+02 0.0026 22.4 7.7 65 25-94 227-291 (333)
354 smart00544 MA3 Domain in DAP-5 45.9 69 0.0015 19.6 7.8 26 10-35 6-31 (113)
355 KOG4648 Uncharacterized conser 45.0 91 0.002 24.2 5.7 77 14-100 105-184 (536)
356 PF11817 Foie-gras_1: Foie gra 44.8 1.2E+02 0.0025 21.8 10.1 18 84-101 188-205 (247)
357 PF02259 FAT: FAT domain; Int 44.6 1.3E+02 0.0028 22.3 9.4 51 13-65 5-57 (352)
358 KOG1920 IkappaB kinase complex 44.5 1.8E+02 0.0039 26.3 7.9 25 41-65 1003-1027(1265)
359 COG2405 Predicted nucleic acid 44.4 59 0.0013 21.6 4.1 33 49-81 121-153 (157)
360 KOG0550 Molecular chaperone (D 44.3 81 0.0018 25.0 5.4 83 20-104 217-317 (486)
361 cd00280 TRFH Telomeric Repeat 44.0 63 0.0014 22.5 4.4 23 43-65 117-139 (200)
362 COG0735 Fur Fe2+/Zn2+ uptake r 43.9 74 0.0016 20.9 4.7 32 43-74 26-57 (145)
363 cd08330 CARD_ASC_NALP1 Caspase 43.8 67 0.0015 18.8 6.6 56 55-116 16-71 (82)
364 smart00638 LPD_N Lipoprotein N 43.7 1.8E+02 0.0039 23.7 12.3 93 7-102 311-404 (574)
365 cd08812 CARD_RIG-I_like Caspas 43.4 62 0.0013 19.3 3.9 49 40-94 37-86 (88)
366 cd08817 CARD_RIG-I_2 Caspase a 43.3 54 0.0012 19.6 3.4 48 9-56 37-84 (88)
367 PF04190 DUF410: Protein of un 43.0 1.3E+02 0.0028 21.9 7.4 27 71-100 141-167 (260)
368 PRK15180 Vi polysaccharide bio 42.7 1.3E+02 0.0027 24.7 6.3 81 16-100 333-417 (831)
369 PHA02884 ankyrin repeat protei 41.7 74 0.0016 23.8 4.9 93 3-102 27-129 (300)
370 KOG2168 Cullins [Cell cycle co 41.6 1.1E+02 0.0023 26.4 6.1 132 15-153 477-647 (835)
371 PRK13913 3-methyladenine DNA g 41.2 59 0.0013 23.1 4.1 33 68-101 24-56 (218)
372 PF03943 TAP_C: TAP C-terminal 40.6 13 0.00028 19.8 0.6 22 51-72 27-49 (51)
373 PF10345 Cohesin_load: Cohesin 39.9 2.2E+02 0.0047 23.6 8.3 85 16-100 149-251 (608)
374 cd08325 CARD_CASP1-like Caspas 39.7 80 0.0017 18.6 5.7 60 55-119 17-76 (83)
375 PF09868 DUF2095: Uncharacteri 39.5 57 0.0012 20.8 3.3 27 42-68 66-92 (128)
376 PF00627 UBA: UBA/TS-N domain; 39.0 49 0.0011 15.9 2.7 32 59-96 5-36 (37)
377 PF10963 DUF2765: Protein of u 38.8 48 0.001 19.7 2.8 32 3-34 13-44 (83)
378 PF03444 HrcA_DNA-bdg: Winged 36.9 90 0.002 18.3 3.8 69 3-78 4-73 (78)
379 TIGR01529 argR_whole arginine 36.7 81 0.0017 20.8 4.0 41 42-82 5-45 (146)
380 cd08329 CARD_BIRC2_BIRC3 Caspa 36.1 1E+02 0.0022 18.7 5.2 55 56-116 25-79 (94)
381 COG5210 GTPase-activating prot 36.1 1.6E+02 0.0035 23.6 6.3 49 56-106 361-409 (496)
382 PF08542 Rep_fac_C: Replicatio 36.0 84 0.0018 18.2 3.8 42 38-81 6-47 (89)
383 KOG1586 Protein required for f 35.7 1.8E+02 0.0039 21.4 5.8 134 16-151 24-177 (288)
384 PF07240 Turandot: Stress-indu 35.3 1E+02 0.0022 18.5 3.9 56 85-140 7-69 (85)
385 PF05944 Phage_term_smal: Phag 35.1 86 0.0019 20.4 3.8 30 39-68 50-79 (132)
386 KOG1130 Predicted G-alpha GTPa 35.1 22 0.00047 28.2 1.2 61 74-150 17-77 (639)
387 PF13934 ELYS: Nuclear pore co 34.9 1.7E+02 0.0036 20.8 9.4 131 2-139 22-183 (226)
388 PF02184 HAT: HAT (Half-A-TPR) 34.4 60 0.0013 15.5 2.6 25 52-78 2-26 (32)
389 PF07827 KNTase_C: KNTase C-te 34.3 42 0.00091 22.1 2.3 62 36-102 58-119 (143)
390 PRK11639 zinc uptake transcrip 34.0 1.5E+02 0.0032 20.0 6.8 68 23-92 11-78 (169)
391 KOG2297 Predicted translation 33.7 1.3E+02 0.0028 23.0 5.0 64 52-122 270-338 (412)
392 PF10474 DUF2451: Protein of u 33.3 1.3E+02 0.0029 21.6 4.9 46 38-84 132-189 (234)
393 PF11838 ERAP1_C: ERAP1-like C 32.6 2E+02 0.0043 21.1 9.7 63 5-67 168-231 (324)
394 COG4649 Uncharacterized protei 32.6 1.8E+02 0.0038 20.4 6.3 88 16-103 68-161 (221)
395 KOG0276 Vesicle coat complex C 32.3 3.1E+02 0.0067 23.2 8.1 45 17-63 648-692 (794)
396 COG5187 RPN7 26S proteasome re 32.2 2.3E+02 0.0049 21.6 6.4 46 37-82 115-164 (412)
397 smart00386 HAT HAT (Half-A-TPR 31.7 54 0.0012 14.2 3.7 28 51-79 1-28 (33)
398 smart00535 RIBOc Ribonuclease 31.7 60 0.0013 20.3 2.8 32 70-103 93-124 (129)
399 COG3294 HD supefamily hydrolas 31.6 40 0.00087 24.3 2.0 49 54-103 67-136 (269)
400 KOG2659 LisH motif-containing 31.4 2E+02 0.0044 20.7 9.2 99 5-103 25-132 (228)
401 smart00164 TBC Domain in Tre-2 31.3 1.5E+02 0.0031 20.1 4.8 40 59-100 153-193 (199)
402 PF07575 Nucleopor_Nup85: Nup8 31.2 52 0.0011 26.9 2.9 75 22-100 390-464 (566)
403 PF12862 Apc5: Anaphase-promot 30.9 1.2E+02 0.0026 18.0 7.3 55 48-102 9-69 (94)
404 KOG2471 TPR repeat-containing 30.5 2E+02 0.0044 23.6 5.7 58 39-100 621-681 (696)
405 KOG1585 Protein required for f 30.3 2.3E+02 0.005 21.0 6.2 15 85-99 201-215 (308)
406 COG2976 Uncharacterized protei 29.6 2.1E+02 0.0045 20.3 8.2 87 13-103 96-188 (207)
407 KOG0687 26S proteasome regulat 29.5 2E+02 0.0044 22.2 5.4 24 84-107 114-137 (393)
408 TIGR02191 RNaseIII ribonucleas 29.4 2E+02 0.0043 20.0 5.9 31 70-102 109-139 (220)
409 KOG0275 Conserved WD40 repeat- 29.2 2.7E+02 0.0058 21.5 6.4 17 85-101 51-67 (508)
410 PRK01381 Trp operon repressor; 29.1 1.1E+02 0.0024 18.8 3.4 35 2-36 2-36 (99)
411 PF08356 EF_assoc_2: EF hand a 29.1 1.4E+02 0.003 18.0 4.5 46 55-100 11-57 (89)
412 PRK05094 dsDNA-mimic protein; 29.1 55 0.0012 20.4 2.1 29 53-81 13-42 (107)
413 TIGR01321 TrpR trp operon repr 29.0 1.4E+02 0.0029 18.3 3.7 31 5-35 5-35 (94)
414 PF08314 Sec39: Secretory path 29.0 1.4E+02 0.003 25.3 5.0 86 36-122 431-530 (715)
415 PF04269 DUF440: Protein of un 28.9 50 0.0011 20.5 1.8 24 53-76 10-34 (103)
416 PF13646 HEAT_2: HEAT repeats; 28.6 1.2E+02 0.0026 17.2 5.4 63 34-102 11-73 (88)
417 cd08318 Death_NMPP84 Death dom 28.5 1.3E+02 0.0029 17.7 3.9 41 53-97 46-86 (86)
418 PF12554 MOZART1: Mitotic-spin 28.5 1E+02 0.0022 16.3 2.8 14 68-81 17-30 (48)
419 COG2973 TrpR Trp operon repres 28.4 95 0.002 19.1 2.9 33 3-35 8-40 (103)
420 PF06287 DUF1039: Protein of u 28.3 1.2E+02 0.0026 17.2 5.4 53 49-104 5-57 (66)
421 COG0292 RplT Ribosomal protein 28.0 90 0.002 19.8 2.9 53 59-114 60-112 (118)
422 cd08332 CARD_CASP2 Caspase act 27.9 1.4E+02 0.0031 17.8 6.6 54 58-117 24-77 (90)
423 PF11740 KfrA_N: Plasmid repli 27.9 1.2E+02 0.0026 18.8 3.7 42 54-101 4-45 (120)
424 PF04124 Dor1: Dor1-like famil 27.4 67 0.0014 24.3 2.7 57 11-67 111-187 (338)
425 PF08461 HTH_12: Ribonuclease 26.7 1.3E+02 0.0027 16.8 4.0 44 43-88 3-46 (66)
426 cd08787 CARD_NOD2_1_CARD15 Cas 26.7 1.5E+02 0.0032 17.6 4.6 33 11-43 7-39 (87)
427 PF14518 Haem_oxygenas_2: Iron 26.2 48 0.001 20.1 1.5 53 39-97 49-101 (106)
428 KOG2168 Cullins [Cell cycle co 25.8 4.5E+02 0.0098 23.0 8.6 93 9-101 625-734 (835)
429 cd08790 DED_DEDD Death Effecto 25.6 1.7E+02 0.0037 18.0 4.1 42 49-93 36-77 (97)
430 PRK09462 fur ferric uptake reg 25.3 2E+02 0.0043 18.7 4.8 47 42-90 21-68 (148)
431 cd08326 CARD_CASP9 Caspase act 25.0 1.6E+02 0.0034 17.4 4.7 62 26-93 19-80 (84)
432 PF09119 SicP-binding: SicP bi 25.0 1.6E+02 0.0034 17.4 5.8 50 21-70 21-70 (81)
433 PRK07452 DNA polymerase III su 25.0 2.3E+02 0.005 21.0 5.2 22 78-102 206-227 (326)
434 KOG3677 RNA polymerase I-assoc 24.7 2.5E+02 0.0055 22.5 5.3 88 10-100 205-298 (525)
435 PF13637 Ank_4: Ankyrin repeat 24.6 1.1E+02 0.0025 15.6 3.8 18 71-91 31-48 (54)
436 PF07064 RIC1: RIC1; InterPro 24.1 2.9E+02 0.0063 20.2 9.5 87 9-102 156-248 (258)
437 PF09477 Type_III_YscG: Bacter 24.1 2E+02 0.0043 18.3 10.4 57 53-112 22-78 (116)
438 COG4496 Uncharacterized protei 24.1 1.7E+02 0.0037 17.7 3.4 34 2-35 4-37 (100)
439 TIGR02328 conserved hypothetic 24.0 80 0.0017 20.1 2.1 24 57-80 55-78 (120)
440 cd04393 RhoGAP_FAM13A1a RhoGAP 23.7 1.3E+02 0.0029 20.5 3.5 56 26-81 80-137 (189)
441 PF05470 eIF-3c_N: Eukaryotic 23.6 2.4E+02 0.0053 23.5 5.4 16 85-100 511-526 (595)
442 PHA02875 ankyrin repeat protei 23.3 3.4E+02 0.0075 20.7 6.5 80 13-99 6-90 (413)
443 TIGR02531 yecD_yerC TrpR-relat 23.2 1.8E+02 0.0039 17.4 3.7 27 38-64 3-29 (88)
444 cd08323 CARD_APAF1 Caspase act 23.0 1.8E+02 0.0039 17.3 6.0 30 87-116 41-70 (86)
445 TIGR02710 CRISPR-associated pr 22.9 3.7E+02 0.0081 21.0 6.3 58 44-101 137-198 (380)
446 KOG0403 Neoplastic transformat 22.9 4.2E+02 0.0091 21.6 8.9 70 9-82 512-584 (645)
447 KOG4414 COP9 signalosome, subu 22.7 1.6E+02 0.0035 19.7 3.5 30 4-33 37-66 (197)
448 KOG0890 Protein kinase of the 22.6 7.9E+02 0.017 24.6 8.9 131 11-149 1388-1539(2382)
449 KOG2223 Uncharacterized conser 22.5 3.8E+02 0.0082 21.6 5.9 55 58-114 460-515 (586)
450 PF00531 Death: Death domain; 22.4 1.5E+02 0.0032 16.7 3.1 42 53-98 40-81 (83)
451 PF04348 LppC: LppC putative l 22.4 29 0.00063 28.2 0.0 86 13-100 31-124 (536)
452 KOG2114 Vacuolar assembly/sort 22.1 5.5E+02 0.012 22.6 8.9 85 7-101 432-517 (933)
453 COG2042 Uncharacterized conser 22.0 2.4E+02 0.0051 19.4 4.2 63 85-151 75-138 (179)
454 PF12926 MOZART2: Mitotic-spin 21.8 2E+02 0.0043 17.4 7.8 63 36-102 9-71 (88)
455 KOG0687 26S proteasome regulat 21.4 3.8E+02 0.0082 20.8 5.5 45 38-82 105-153 (393)
456 TIGR02498 type_III_ssaH type I 21.4 1.9E+02 0.0041 17.0 6.5 55 48-105 17-71 (79)
457 KOG1464 COP9 signalosome, subu 21.1 3.7E+02 0.0081 20.3 8.7 104 39-142 193-318 (440)
458 KOG2616 Pyridoxalphosphate-dep 21.0 3.3E+02 0.0072 19.7 5.3 56 9-64 69-143 (266)
459 PF07875 Coat_F: Coat F domain 21.0 1.3E+02 0.0028 16.5 2.5 33 36-70 29-61 (64)
460 PF12816 Vps8: Golgi CORVET co 20.9 3E+02 0.0065 19.1 5.4 30 4-33 20-49 (196)
461 cd07229 Pat_TGL3_like Triacylg 20.6 4.3E+02 0.0092 20.8 8.0 109 10-121 121-253 (391)
462 PF14840 DNA_pol3_delt_C: Proc 20.4 1E+02 0.0023 19.7 2.3 28 49-76 9-36 (125)
463 PF06169 DUF982: Protein of un 20.3 1.9E+02 0.0041 16.6 4.7 42 22-63 20-66 (76)
464 PF14669 Asp_Glu_race_2: Putat 20.3 3.3E+02 0.0072 19.4 9.4 62 84-152 142-205 (233)
465 smart00031 DED Death effector 20.3 1.9E+02 0.0042 16.6 4.8 42 53-97 37-78 (79)
466 PF08673 RsbU_N: Phosphoserine 20.2 1.8E+02 0.004 16.9 3.1 34 39-72 3-39 (77)
467 KOG1874 KEKE-like motif-contai 20.0 2.2E+02 0.0048 26.1 4.5 44 4-48 255-298 (1477)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=219.94 Aligned_cols=150 Identities=31% Similarity=0.521 Sum_probs=134.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.||..+||+||++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|++.|++||..||+++|.+|
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~ 335 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF 335 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred ---------------------------------HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC-------
Q 035927 83 ---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------- 122 (153)
Q Consensus 83 ---------------------------------~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------- 122 (153)
+|+++|++++|.++|++|.++|+.+||+||.+|++.|..+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 7899999999999999999999999999999999998877
Q ss_pred -----CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -----TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|+.||..||++++.+|++.|..++|.++|+
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999999999999999885
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=7e-30 Score=205.49 Aligned_cols=150 Identities=27% Similarity=0.439 Sum_probs=136.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.||..+||.+++.|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|++.|+.||..||+.++.+|
T Consensus 155 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 155 EPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred CcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998888877777665555443
Q ss_pred ---------------------------------HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC-------
Q 035927 83 ---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------- 122 (153)
Q Consensus 83 ---------------------------------~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------- 122 (153)
+|+++|++++|.++|+.|.++|+++||++|.+|++.|.++
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3799999999999999999999999999999999998887
Q ss_pred -----CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -----TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|+.||..||++++.+|++.|.+++|.+++.
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 889999999999999999999888888763
No 3
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=8.6e-30 Score=208.86 Aligned_cols=150 Identities=35% Similarity=0.566 Sum_probs=130.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
+||..+||++|++|++.|++++|.++|++|++||..+||+||.+|++.|++++|+++|++|++.|++||..||+.+|.+|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC 298 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence 47888888899999999999999999999998899999999999999999999999999998888888888888777776
Q ss_pred ---------------------------------HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC-------
Q 035927 83 ---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------- 122 (153)
Q Consensus 83 ---------------------------------~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------- 122 (153)
+|+++|++++|.++|+.|.++|..+||++|.+|++.|.++
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999998877
Q ss_pred -----CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -----TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|+.||..||++++.+|++.|++++|.+++.
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 788888888888888877777777777653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=9e-29 Score=204.15 Aligned_cols=147 Identities=24% Similarity=0.404 Sum_probs=88.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
+||..+||++|++|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|++.|++||..||+.+
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3566666666666666666666666666665 356666666666666666666666666666666666666666666
Q ss_pred HHHHHHhccCChHHHHHHHHhcc------cCChhhHHHHHHHHHhcCCCC------------CCCCCHhHHHHHHHHHhc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKML------RKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSACTH 140 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~------~~~~~~~~~li~~~~~~~~~~------------~~~p~~~t~~~ll~~~~~ 140 (153)
|.+ |++.|++++|.++|+.|. .||..+|+++|.+|++.|.++ ++.|+..+|+++|.+|++
T Consensus 549 I~a--~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 549 ISA--CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHH--HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 666 366666666666666663 245566666666666665544 455555555555555555
Q ss_pred CCchhHhhhhc
Q 035927 141 NGNETFVINSC 151 (153)
Q Consensus 141 ~g~~~~a~~~~ 151 (153)
.|++++|.++|
T Consensus 627 ~G~~deAl~lf 637 (1060)
T PLN03218 627 KGDWDFALSIY 637 (1060)
T ss_pred cCCHHHHHHHH
Confidence 55555555554
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=7.1e-29 Score=203.46 Aligned_cols=149 Identities=34% Similarity=0.569 Sum_probs=133.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
+||..+||+||++|++.|++++|.++|++|..||..+||+||.+|++.|++++|+++|++|++.|+.||..||+.+|.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999988888888876
Q ss_pred ---------------------------------HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC-------
Q 035927 83 ---------------------------------MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------- 122 (153)
Q Consensus 83 ---------------------------------~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------- 122 (153)
+|+++|++++|.++|++|.++|+.+||++|.+|++.+..+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 5899999999999999999999999999999999997765
Q ss_pred ----CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 123 ----TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 123 ----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+++||..||+++|.+|++.|.++.+.+++
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 78899999988888877777777666654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.96 E-value=1.9e-28 Score=202.19 Aligned_cols=149 Identities=19% Similarity=0.337 Sum_probs=81.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
+||..+|+++|++|++.|++++|.++|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||+++
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsL 655 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555555555555555555555542 34455555555555555555555555555555555555555555
Q ss_pred HHHH---------------------------------HHhccCChHHHHHHHHhcc----cCChhhHHHHHHHHHhcCCC
Q 035927 79 LTAY---------------------------------MYCKCGDVEKAQRVLRKML----RKDKFTWTAMIVGLAISDPF 121 (153)
Q Consensus 79 i~~~---------------------------------~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~ 121 (153)
|.+| +|++.|++++|.++|+.|. .||..+||++|.+|++.|.+
T Consensus 656 I~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ 735 (1060)
T PLN03218 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL 735 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 5552 1355555555555555553 34555566666666555554
Q ss_pred C------------CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 122 P------------TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 122 ~------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+ |+.||..||+++|.+|++.|++++|.++|
T Consensus 736 eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4 55566666666666666666666655554
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.67 E-value=2.5e-16 Score=85.70 Aligned_cols=50 Identities=38% Similarity=0.776 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 35 RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
||..+||++|++|++.|++++|+++|++|++.|++||..||+++|++| +|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~--~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL--CK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--cC
Confidence 789999999999999999999999999999999999999999999995 64
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.56 E-value=9.4e-15 Score=79.43 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhc
Q 035927 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTH 140 (153)
Q Consensus 70 p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~ 140 (153)
||+.+||++|++ |++.|++++|.++|++|.+. |++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~--~~~~~~~~~a~~l~~~M~~~-------------------g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISG--YCKAGKFEEALKLFKEMKKR-------------------GIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHH--HHHCcCHHHHHHHHHHHHHc-------------------CCCCCHHHHHHHHHHHcC
Confidence 899999999999 59999999999999999988 788999999999999875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.21 E-value=5.6e-10 Score=84.43 Aligned_cols=59 Identities=14% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
.+..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 345555555555555555555555542 23445555555555555555555555555443
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=5.1e-11 Score=59.22 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=29.1
Q ss_pred CCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 66 SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 66 ~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+|+.||..|||++|++ ||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~--~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDG--YCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHH--HHHCCCHHHHHHHHHhCc
Confidence 4788999999999998 599999999999998874
No 11
>PF12854 PPR_1: PPR repeat
Probab=99.18 E-value=4.5e-11 Score=59.41 Aligned_cols=31 Identities=32% Similarity=0.688 Sum_probs=26.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
+||..|||+||++||+.|++++|.++|++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5888888888888888888888888888884
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.14 E-value=2.1e-09 Score=81.32 Aligned_cols=145 Identities=8% Similarity=-0.012 Sum_probs=91.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCC--C------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER--D------YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 75 (153)
++..+++.++..+.+.|++++|.+.++++.+. + ...|..+...+.+.|++++|...++++.+.. +.+...+
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 217 (389)
T PRK11788 139 FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRAS 217 (389)
T ss_pred chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHH
Confidence 44556777777777777777777777776431 1 1234556666667777777777777776543 1233344
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhccc--CC--hhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHhcC
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKMLR--KD--KFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~~--~~--~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~~~ 141 (153)
..+... |.+.|++++|.++|+++.+ |+ ...++.+..+|...|.++ ...|+...+..+...+.+.
T Consensus 218 ~~la~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~ 295 (389)
T PRK11788 218 ILLGDL--ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQ 295 (389)
T ss_pred HHHHHH--HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 444444 5777777777777777753 22 344666777777776666 4456666666777777777
Q ss_pred CchhHhhhhc
Q 035927 142 GNETFVINSC 151 (153)
Q Consensus 142 g~~~~a~~~~ 151 (153)
|+.++|.+++
T Consensus 296 g~~~~A~~~l 305 (389)
T PRK11788 296 EGPEAAQALL 305 (389)
T ss_pred CCHHHHHHHH
Confidence 7777777665
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.3e-09 Score=82.01 Aligned_cols=143 Identities=17% Similarity=0.253 Sum_probs=114.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
+.+..+|.++|.+.|+-...+.|.+++.+-.. -+..+||.+|.+-.-. ...+++.+|.+...+||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 45667999999999999999999999998874 3778888888765433 237899999999999999999999
Q ss_pred HHHHHHhccCChHHHHHH----HHhc----ccCChhhHHHHHHHHHhcCCCC--------------------CCCC-CHh
Q 035927 79 LTAYMYCKCGDVEKAQRV----LRKM----LRKDKFTWTAMIVGLAISDPFP--------------------TIRP-DEV 129 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~----~~~m----~~~~~~~~~~li~~~~~~~~~~--------------------~~~p-~~~ 129 (153)
+.+ ..+-|+++.|.+. +.+| ++|...+|..+|..+++.++-+ -+.| |..
T Consensus 280 L~c--~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 280 LSC--AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHH--HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 998 5999988776555 4444 3578889999999999885553 3334 346
Q ss_pred HHHHHHHHHhcCCchhHhhhhc
Q 035927 130 TYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 130 t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.|.+.+..|.+..+.+.|.++-
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~ 379 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVH 379 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 6888899999988888888764
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.4e-09 Score=81.84 Aligned_cols=113 Identities=14% Similarity=0.227 Sum_probs=96.4
Q ss_pred HHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc----ccC
Q 035927 28 YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM----LRK 103 (153)
Q Consensus 28 l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m----~~~ 103 (153)
++-+....+..+|.+||.++|+-...+.|.+++++-.....+.+..+||.+|++..|.+ ..++..+| ..|
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------GKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------cHHHHHHHHHhhcCC
Confidence 44444445778999999999999999999999999999999999999999999852322 25666666 458
Q ss_pred ChhhHHHHHHHHHhcCCCC----------------CCCCCHhHHHHHHHHHhcCCchhH
Q 035927 104 DKFTWTAMIVGLAISDPFP----------------TIRPDEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 104 ~~~~~~~li~~~~~~~~~~----------------~~~p~~~t~~~ll~~~~~~g~~~~ 146 (153)
|..|||+++.+.++.|.|+ |+.|...+|-.+|..+.+.++..+
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 9999999999999999888 999999999999999999888754
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.97 E-value=4e-08 Score=80.45 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.+..+...+.+.|++++|..+++++.. .+...|..+...+.+.|++++|...++.+.+.+ +.+...+..+... |
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~ 645 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA--Y 645 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH--H
Confidence 344444444444444444444444431 234445555555555555555555555554332 1223333333333 3
Q ss_pred hccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC
Q 035927 85 CKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
.+.|++++|.+.|+++.+. +...|..+...+...|.++
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Confidence 5555555555555554321 3444444444444444443
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.96 E-value=3.2e-08 Score=81.06 Aligned_cols=94 Identities=11% Similarity=0.201 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...|..+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|...++++.+.. +.+..++..+..
T Consensus 599 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 677 (899)
T TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQ 677 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3445566666666666666666666666532 244455555555555566666666665555432 123344444444
Q ss_pred HHHHhccCChHHHHHHHHhc
Q 035927 81 AYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m 100 (153)
. +.+.|++++|.++++.+
T Consensus 678 ~--~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 678 L--LLAAKRTESAKKIAKSL 695 (899)
T ss_pred H--HHHcCCHHHHHHHHHHH
Confidence 3 34444444444444444
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.92 E-value=2.5e-09 Score=52.99 Aligned_cols=35 Identities=43% Similarity=0.703 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 72 (153)
.+||++|++|++.|++++|.++|++|++.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.82 E-value=8.2e-09 Score=50.97 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 70 (153)
.+||.+|++|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.68 E-value=2.6e-06 Score=59.01 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...+..+...+.+.|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+..- .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~- 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF- 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH-
Confidence 34567777778888888888888877642 2 456677777777778888888888877766531 233344444444
Q ss_pred HHhccCChHHHHHHHHhcccC-----ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhH
Q 035927 83 MYCKCGDVEKAQRVLRKMLRK-----DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~ 146 (153)
|...|++++|.+.+++..+. ....+..+...+...|.++ ...|+ ...+..+...+...|+.++
T Consensus 109 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 -LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred -HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 57778888888888777542 2344555555666666555 23333 4556667777777777777
Q ss_pred hhhhc
Q 035927 147 VINSC 151 (153)
Q Consensus 147 a~~~~ 151 (153)
|.+.+
T Consensus 188 A~~~~ 192 (234)
T TIGR02521 188 ARAYL 192 (234)
T ss_pred HHHHH
Confidence 77655
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.65 E-value=2.7e-06 Score=58.94 Aligned_cols=145 Identities=11% Similarity=0.108 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
+...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+....| ....+..+..
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 456788889999999999999999988763 356778888889999999999999999998754333 3334444444
Q ss_pred HHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~ 146 (153)
. |.+.|++++|.+.+++..+. +...+..+...+...+.++ ...| +...+..+...+...|+.++
T Consensus 144 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 144 C--ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred H--HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 4 79999999999999998643 4667888888888887777 2233 55667778888889999999
Q ss_pred hhhhc
Q 035927 147 VINSC 151 (153)
Q Consensus 147 a~~~~ 151 (153)
|.++.
T Consensus 222 a~~~~ 226 (234)
T TIGR02521 222 AQRYG 226 (234)
T ss_pred HHHHH
Confidence 88763
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.62 E-value=5e-08 Score=46.97 Aligned_cols=30 Identities=37% Similarity=0.774 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
+||+||++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777664
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.50 E-value=9.8e-06 Score=65.85 Aligned_cols=143 Identities=10% Similarity=-0.029 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...+..+...+.+.|++++|...++++. .| +...+..+ ..+.+.|++++|...++.+.+..-.++......+...
T Consensus 144 ~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~- 221 (656)
T PRK15174 144 SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT- 221 (656)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH-
Confidence 4455566666666666666666665543 12 22222222 2345566666666666665544222223333333333
Q ss_pred HHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC--------------CCCCC-HhHHHHHHHHHhcCCch
Q 035927 83 MYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP--------------TIRPD-EVTYVGVLSACTHNGNE 144 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~--------------~~~p~-~~t~~~ll~~~~~~g~~ 144 (153)
+.+.|+.++|+..+++..+. +...+..+...+...|.++ ...|+ ...+..+...+.+.|+.
T Consensus 222 -l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 222 -LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred -HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 45666666666666665432 3445555555555555543 22343 34455555555566666
Q ss_pred hHhhhhc
Q 035927 145 TFVINSC 151 (153)
Q Consensus 145 ~~a~~~~ 151 (153)
++|...+
T Consensus 301 ~eA~~~l 307 (656)
T PRK15174 301 EKAIPLL 307 (656)
T ss_pred HHHHHHH
Confidence 6655544
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.48 E-value=1e-05 Score=65.25 Aligned_cols=144 Identities=12% Similarity=-0.056 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...|+.+...+...|++++|...|++..+ | +...|..+...+...|++++|...++...+.. +-+...+..+-..
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~- 408 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL- 408 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH-
Confidence 34577788888899999999999998863 4 46688888888999999999999999997753 2345566666555
Q ss_pred HHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhHhh
Q 035927 83 MYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~a~ 148 (153)
|...|++++|+..|++..+ | +...|..+...+.+.|.++ ...|+ ...++.+...+...|++++|.
T Consensus 409 -~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 -HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred -HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 6999999999999999865 3 5677778888888888777 44565 577888999999999999998
Q ss_pred hhcc
Q 035927 149 NSCN 152 (153)
Q Consensus 149 ~~~~ 152 (153)
+.|+
T Consensus 488 ~~~~ 491 (615)
T TIGR00990 488 EKFD 491 (615)
T ss_pred HHHH
Confidence 8764
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.45 E-value=9.3e-07 Score=64.37 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=90.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP-----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVR 77 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ 77 (153)
++...+...+..+.+.++++++.+++++.. .++...|..+...+.+.|+.++|+..+++..+. .| |....+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 556667888888899999999999888854 236778888888888999999999999988875 35 4666777
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGN 143 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~ 143 (153)
++.. +...|+.+++.++++...+ .|...|..+..++...|..+ ...| |......+..++.+.|+
T Consensus 186 l~~~--li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 186 LAWL--LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR 263 (280)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred HHHH--HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc
Confidence 7777 5888998887777777643 36677788888888887766 3345 67888889999999999
Q ss_pred hhHhhhhcc
Q 035927 144 ETFVINSCN 152 (153)
Q Consensus 144 ~~~a~~~~~ 152 (153)
.++|.++.+
T Consensus 264 ~~~A~~~~~ 272 (280)
T PF13429_consen 264 KDEALRLRR 272 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 999998764
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.36 E-value=2.1e-05 Score=63.96 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=63.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHH----HHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 13 VSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFRE----ALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
...+.+.|++++|...+++..+ | +...+..+-..+.+.|++++ |+..+++..+.. +.+...+..+... +.
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~--l~ 295 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADA--LI 295 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHH--HH
Confidence 3344444444444444444431 1 33444444455555555443 455555444321 1123333333333 45
Q ss_pred ccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCHhH-HHHHHHHHhcCCchhHhhhhc
Q 035927 86 KCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDEVT-YVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.|++++|...+++..+ | +...+..+...+.+.|.++ ...|+... +..+..++...|+.++|.+.|
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55566666555555532 2 3344445555555555555 23454433 222344556666666666554
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.35 E-value=2.2e-05 Score=63.30 Aligned_cols=145 Identities=7% Similarity=-0.002 Sum_probs=87.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+..+|..+...+...|++++|...|++... | +...+..+...+.+.|++++|+..+++..+.. +-+...++.+-..
T Consensus 398 ~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~ 476 (615)
T TIGR00990 398 DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGEL 476 (615)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345566666677777777777777766642 2 45566666667777777777777777766531 2234455555444
Q ss_pred HHHhccCChHHHHHHHHhcccC--C-hh-------hHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK--D-KF-------TWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTH 140 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~--~-~~-------~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~ 140 (153)
|...|++++|++.|++..+- + .. .++.....+...+.++ .+.|+. ..+..+...+.+
T Consensus 477 --~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~ 554 (615)
T TIGR00990 477 --LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQ 554 (615)
T ss_pred --HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 57778888888877776431 1 11 1111111222223333 344544 457788888888
Q ss_pred CCchhHhhhhcc
Q 035927 141 NGNETFVINSCN 152 (153)
Q Consensus 141 ~g~~~~a~~~~~ 152 (153)
.|++++|++.|+
T Consensus 555 ~g~~~eAi~~~e 566 (615)
T TIGR00990 555 QGDVDEALKLFE 566 (615)
T ss_pred ccCHHHHHHHHH
Confidence 888888887764
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.33 E-value=5.7e-07 Score=65.49 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~ 82 (153)
...+..++.. ...+++++|.+++.+.- .++...+..++..+.+.++++++.++++...+.. .++|...|..+...
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~- 155 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI- 155 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH-
T ss_pred cccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH-
Confidence 3345566666 67888888888877663 2467778889999999999999999999987543 44566666666666
Q ss_pred HHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhcCCchhHhh
Q 035927 83 MYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~~g~~~~a~ 148 (153)
+.+.|+.++|++.+++..+ | |....+.++..+...|..+ ..+.|...+..+..++...|+.++|.
T Consensus 156 -~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 156 -YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp -HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred -HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence 6999999999999999864 5 5677777888877776555 23456677888999999999999999
Q ss_pred hhcc
Q 035927 149 NSCN 152 (153)
Q Consensus 149 ~~~~ 152 (153)
..|+
T Consensus 235 ~~~~ 238 (280)
T PF13429_consen 235 EYLE 238 (280)
T ss_dssp HHHH
T ss_pred cccc
Confidence 8774
No 28
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.31 E-value=2.4e-05 Score=59.70 Aligned_cols=121 Identities=18% Similarity=0.125 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
.-.+|+..+...++++.|..+|+++.+.+......+.+.+...++-.+|..++.+..+.. +-|......-.+. +.+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f--Ll~k 247 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF--LLSK 247 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHhc
Confidence 345677777888999999999999998777777788888888888889999998888542 2355555555554 5899
Q ss_pred CChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCH-hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDE-VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 88 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
++.+.|+++.++..+- .|+. .+|..|..+|.+.|+++.|+...|
T Consensus 248 ~~~~lAL~iAk~av~l---------------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL---------------------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred CCHHHHHHHHHHHHHh---------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999763 3544 578888888888888888775543
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.30 E-value=2.1e-05 Score=66.34 Aligned_cols=97 Identities=16% Similarity=0.022 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC-----
Q 035927 51 NRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----- 122 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----- 122 (153)
|++++|...+++..+. .|+...+..+-.. +.+.|+.++|+..+++..+ | +...++.+...+...|.++
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~--l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATI--YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555555433 2444444444443 4566666666666665543 2 3445555555555555554
Q ss_pred -----CCCCC-HhHHHHHHHHHhcCCchhHhhhhc
Q 035927 123 -----TIRPD-EVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 123 -----~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
...|+ ...+..+-.++...|++++|...|
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33443 344566666666666666666544
No 30
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.30 E-value=7.2e-06 Score=62.94 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=94.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC-C-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-R-----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
+......+++.+....+++++..++.+.+. | -..|..++|+.|.+.|..++++.+++.=..-|+-||..|||.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 344566778888888889999999999984 2 2346779999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChHHHHHHHHhccc----CChhhHHHHHHHHHhc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR----KDKFTWTAMIVGLAIS 118 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~ 118 (153)
|+. +.+.|++..|.++...|.. .+..++...+.+|.+.
T Consensus 145 md~--fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDH--FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHH--HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999 5999999999999998853 2667777777777766
No 31
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.28 E-value=1.1e-06 Score=43.10 Aligned_cols=29 Identities=31% Similarity=0.639 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
.+||++|.+ |++.|++++|.++|++|.+.
T Consensus 1 ~~~n~li~~--~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 1 VTYNTLIDG--LCKAGRVEEALELFKEMLER 29 (35)
T ss_pred CcHHHHHHH--HHHCCCHHHHHHHHHHHHHc
Confidence 479999999 59999999999999999887
No 32
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.27 E-value=8.1e-07 Score=42.58 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER 35 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 35 (153)
.+||++|++|++.|++++|.++|++|.+.
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 48999999999999999999999999754
No 33
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.27 E-value=1.4e-05 Score=50.09 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhHHHHHHHHHHHhccC--------ChHHHHHHHHhcccCChhhHH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDEFTIVRILTAYMYCKCG--------DVEKAQRVLRKMLRKDKFTWT 109 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~~~g--------~~~~a~~~~~~m~~~~~~~~~ 109 (153)
|-...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+. ++.. ++-..+.++..|...
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si--~~R~lD~~~ie~kl~~LLtvYqDiL~~------ 98 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSI--AKRELDSEDIENKLTNLLTVYQDILSN------ 98 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--HHccccchhHHHHHHHHHHHHHHHHHh------
Confidence 345667777778999999999999999999 99999999999993 3322 233455666666655
Q ss_pred HHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcC
Q 035927 110 AMIVGLAISDPFPTIRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 110 ~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~ 141 (153)
+++|+..||+.++.+..+.
T Consensus 99 -------------~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 99 -------------KLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred -------------ccCCcHHHHHHHHHHHHHh
Confidence 6889999999998887653
No 34
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.21 E-value=1.8e-06 Score=42.32 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+.+|+++|.+| ++.|+++.|.++|+.|.+.
T Consensus 1 v~ty~~ll~a~--~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 1 VHTYNALLRAC--AKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred CcHHHHHHHHH--HHCCCHHHHHHHHHHHHHh
Confidence 36899999995 9999999999999999876
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.19 E-value=0.00013 Score=61.75 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=101.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH-H
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL-T 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li-~ 80 (153)
|+......+...+.+.|++++|...|+++.. |+...+..+...+.+.|++++|...++..++.+ |+.......+ .
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHH
Confidence 4433333334445678999999999987753 344556666777788899999999998888754 4332222222 2
Q ss_pred HHHHhccCChHHHHHHHHhccc--CChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCCchhHh
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--KDKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNGNETFV 147 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g~~~~a 147 (153)
. ..+.|++++|...+++..+ |+...|..+...+.+.|..+ ...|+. ..++.+-.++...|+.++|
T Consensus 585 ~--l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 585 Q--RYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred H--HHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 2 2456999999999998864 67778888888888888877 556764 5567777788899999999
Q ss_pred hhhcc
Q 035927 148 INSCN 152 (153)
Q Consensus 148 ~~~~~ 152 (153)
++.|+
T Consensus 663 i~~l~ 667 (987)
T PRK09782 663 REMLE 667 (987)
T ss_pred HHHHH
Confidence 88764
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.13 E-value=2.3e-05 Score=64.04 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC----ChhhHHHHHHHHHhcCCCC---------CCCCCHhHHHHHH
Q 035927 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----DKFTWTAMIVGLAISDPFP---------TIRPDEVTYVGVL 135 (153)
Q Consensus 69 ~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~---------~~~p~~~t~~~ll 135 (153)
.|+..+|.++++. -...|+.+.|..+...|++. +..-|..++.|--...-++ |+.|+..|+.-.+
T Consensus 201 ~~~s~~l~a~l~~--alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 201 APTSETLHAVLKR--ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CCChHHHHHHHHH--HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 4777777777777 37777788888887777664 3444555555511111111 7888888888877
Q ss_pred HHHhcCCchhH
Q 035927 136 SACTHNGNETF 146 (153)
Q Consensus 136 ~~~~~~g~~~~ 146 (153)
..+..+|....
T Consensus 279 ip~l~N~~t~~ 289 (1088)
T KOG4318|consen 279 IPQLSNGQTKY 289 (1088)
T ss_pred Hhhhcchhhhh
Confidence 77777665443
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.10 E-value=0.0001 Score=56.57 Aligned_cols=139 Identities=14% Similarity=0.232 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.|..++....+..+.+...+++++++. .+......+...+.+.|+.++|..++++..+. .||.... ++.+ .
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~--~ 304 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIP--R 304 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHh--h
Confidence 445555555566667778888888763 36777788888888888888888888887763 4444222 2222 3
Q ss_pred hccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 85 CKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
...++.+++.+..+...+ | |.....++-..+.+.+.++ ...|+..++..+...+.+.|+.++|.++|
T Consensus 305 l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~ 384 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMR 384 (398)
T ss_pred ccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556888888888887754 2 5666777777777777777 67799999999999999999999999887
Q ss_pred c
Q 035927 152 N 152 (153)
Q Consensus 152 ~ 152 (153)
+
T Consensus 385 ~ 385 (398)
T PRK10747 385 R 385 (398)
T ss_pred H
Confidence 5
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=98.10 E-value=0.00015 Score=57.90 Aligned_cols=135 Identities=10% Similarity=-0.003 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-HHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF-TIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~ 80 (153)
+...+..+-..+...|++++|...|++.. .| +...|..+-..+...|++++|...+++..+.+ |+.. .+..+..
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHH
Confidence 45567777777788888888888888865 34 45677777778888888888888888887653 3322 2223333
Q ss_pred HHHHhccCChHHHHHHHHhccc---C-ChhhHHHHHHHHHhcCCCC----------CCCCCHhH-HHHHHHHHhcCCc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---K-DKFTWTAMIVGLAISDPFP----------TIRPDEVT-YVGVLSACTHNGN 143 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~-~~~~~~~li~~~~~~~~~~----------~~~p~~~t-~~~ll~~~~~~g~ 143 (153)
. +...|++++|++.+++..+ | +...+..+...+...|.++ ...|+..+ .+.+...|.+.|+
T Consensus 415 ~--~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 415 I--TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred H--HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 3 3557888888888887743 3 3444555666666666655 23344333 4444455566663
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.08 E-value=0.00046 Score=50.85 Aligned_cols=143 Identities=15% Similarity=0.037 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...|+.+-..+.+.|++++|...|++..+ | +...|..+...+...|++++|.+.++...+. .|+..........
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 445677777777777777777777776642 3 4556666666666777777777777776654 2432211111111
Q ss_pred HHHhccCChHHHHHHHHhcccC-ChhhHHHHHHHHHhcCCCC----------C------CCCC-HhHHHHHHHHHhcCCc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK-DKFTWTAMIVGLAISDPFP----------T------IRPD-EVTYVGVLSACTHNGN 143 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~~~~~----------~------~~p~-~~t~~~ll~~~~~~g~ 143 (153)
....++.++|...|.+.... +...|..-+..+ ..+.+. + ..|+ ...|..+-..+.+.|+
T Consensus 175 --~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~-~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 175 --AESKLDPKQAKENLKQRYEKLDKEQWGWNIVEF-YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred --HHccCCHHHHHHHHHHHHhhCCccccHHHHHHH-HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 24556777777777554322 222332222111 122221 1 1122 3568888999999999
Q ss_pred hhHhhhhcc
Q 035927 144 ETFVINSCN 152 (153)
Q Consensus 144 ~~~a~~~~~ 152 (153)
.++|...|+
T Consensus 252 ~~~A~~~~~ 260 (296)
T PRK11189 252 LDEAAALFK 260 (296)
T ss_pred HHHHHHHHH
Confidence 999998875
No 40
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.06 E-value=6.1e-05 Score=52.58 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=83.7
Q ss_pred hHHHHHHHHhC--CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCChhHHHHHHHHH------------
Q 035927 22 VDIARQYFAQM--PERDYVLWTAMIDGYLRV-----NRFREALTLFPEMQTSNIRPDEFTIVRILTAY------------ 82 (153)
Q Consensus 22 ~~~a~~l~~~m--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~------------ 82 (153)
+......|++. ..+|-.+|..+++.|.+. |+.+-....+..|.+-|+.-|..+|+.||+.+
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33456677776 467999999999999864 78888888999999999999999999999985
Q ss_pred -HH-hccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCch
Q 035927 83 -MY-CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNE 144 (153)
Q Consensus 83 -~~-~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 144 (153)
++ -...+-+-|++++++|... |+.||..|+..+++.+.+.+..
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~-------------------gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENN-------------------GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHc-------------------CCCCcHHHHHHHHHHhccccHH
Confidence 11 1122347789999999887 8899999999999998876653
No 41
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=0.00019 Score=46.23 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=76.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+......+...+.+.|++++|.+.|++... .+...|..+-..+.+.|++++|...++...+.+ +.+..++..+-..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 445577788889999999999999988753 377888899999999999999999999887664 2334444444443
Q ss_pred HHHhccCChHHHHHHHHhcccC
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
|...|+.++|.+.|+...+.
T Consensus 95 --~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 --LLALGEPESALKALDLAIEI 114 (135)
T ss_pred --HHHcCCHHHHHHHHHHHHHh
Confidence 79999999999999998763
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.04 E-value=2e-05 Score=62.33 Aligned_cols=140 Identities=14% Similarity=0.159 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC------------------------------------C-CHHHHHHHHHHHHhcC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE------------------------------------R-DYVLWTAMIDGYLRVN 51 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~------------------------------------~-~~~~~~~li~~~~~~~ 51 (153)
...+-.+|...+++++|.++|+..++ | .+.+|.++-..|.-.+
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 45677889999999999999998873 1 4568999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHH---HHHHHHhcCCCC-----
Q 035927 52 RFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTA---MIVGLAISDPFP----- 122 (153)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---li~~~~~~~~~~----- 122 (153)
+.+.|+..|++..+.+ | .+.+|+.+=.- +....++|+|.+-|+.....|+..||+ +-..|.+.+.++
T Consensus 436 dh~~Aik~f~RAiQld--p~faYayTLlGhE--~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQLD--PRFAYAYTLLGHE--SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred HHHHHHHHHHHhhccC--CccchhhhhcCCh--hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence 9999999999887653 4 66777776666 688899999999999999888888887 455677777766
Q ss_pred -----CCCC-CHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -----TIRP-DEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+-| +.+....+...+-+.|+.|+|+++|+
T Consensus 512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 5556 45667778888899999999999886
No 43
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00024 Score=46.76 Aligned_cols=122 Identities=9% Similarity=0.073 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHH-HHH--HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHH--HH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER---DYV-LWT--AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV--RI 78 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~-~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--~l 78 (153)
..|..++..+. .++...+...++.+... +.. ... .+-..+...|++++|...|+......-.|+..... .+
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 45777777774 88889998888888743 211 222 23366667899999999999999876223222222 23
Q ss_pred HHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
... +...|++++|+..++....+. +....+...-..+.+.|+.++|...|+
T Consensus 92 A~~--~~~~~~~d~Al~~L~~~~~~~---------------------~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 92 ARI--LLQQGQYDEALATLQQIPDEA---------------------FKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHH--HHHcCCHHHHHHHHHhccCcc---------------------hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333 689999999999998865441 344566677888999999999998875
No 44
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.01 E-value=6.7e-05 Score=47.08 Aligned_cols=75 Identities=11% Similarity=0.316 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHhhCCCCCChhH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRVN--------RFREALTLFPEMQTSNIRPDEFT 74 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~~~~p~~~t 74 (153)
|-..-|..+...+++...-.+|+.+++ |+..+|+.++++.++.. ++.+.+.++++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345567777778999999999999874 68899999999999752 35688999999999999999999
Q ss_pred HHHHHHHH
Q 035927 75 IVRILTAY 82 (153)
Q Consensus 75 ~~~li~~~ 82 (153)
|+.+++..
T Consensus 107 Ynivl~~L 114 (120)
T PF08579_consen 107 YNIVLGSL 114 (120)
T ss_pred HHHHHHHH
Confidence 99999983
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.00022 Score=58.33 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=99.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.++..+-.|.....+.|+.++|..+++...+ | +......+...+.+.+++++|+...++..+. .|+..+.-....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 3466788888899999999999999999974 4 6678888899999999999999999999876 477777777777
Q ss_pred HHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC-HhHHHHHHHHHhcCCchhHhhhhc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD-EVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.+ +.+.|+.++|..+|++...++ |+ ...+.+.-.++-..|+.++|...|
T Consensus 162 ~~-l~~~g~~~~A~~~y~~~~~~~---------------------p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 162 KS-WDEIGQSEQADACFERLSRQH---------------------PEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HH-HHHhcchHHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 75 899999999999999998753 33 456666666666677777666555
No 46
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.93 E-value=0.00065 Score=44.73 Aligned_cols=92 Identities=8% Similarity=0.086 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.+..+-..+.+.|++++|...|++... .+...|..+-..+.+.|++++|...|+...+.+ +.+...+..+-.+ +
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~--l 102 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC--L 102 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH--H
Confidence 355567788999999999999998763 377889999999999999999999999999753 2355555555554 6
Q ss_pred hccCChHHHHHHHHhccc
Q 035927 85 CKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~ 102 (153)
.+.|+.++|...|+...+
T Consensus 103 ~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999865
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.90 E-value=0.00037 Score=54.88 Aligned_cols=144 Identities=15% Similarity=0.183 Sum_probs=104.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC----------CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE----------RD-YVLWTAMIDGYLRVNRFREALTLFPEMQTS---NIRPD 71 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~----------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~ 71 (153)
..+++.|-.+|.+.|++++|...+++..+ +. ..-++.+...+...+++++|..++....+- -..++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 34588888899999999887766665531 22 235777777788889999999998877432 12333
Q ss_pred h----hHHHHHHHHHHHhccCChHHHHHHHHhcccC-----------ChhhHHHHHHHHHhcCCCC--------------
Q 035927 72 E----FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----------DKFTWTAMIVGLAISDPFP-------------- 122 (153)
Q Consensus 72 ~----~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~~~~~-------------- 122 (153)
. .+++-+-.. |-+.|++++|.+++++.++. .-...|.+...|.+.+..+
T Consensus 363 ~~~~a~~~~nl~~l--~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 363 NVNLAKIYANLAEL--YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred chHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 455555555 79999999999999998542 2345677777887775555
Q ss_pred CCC---CCH-hHHHHHHHHHhcCCchhHhhhhc
Q 035927 123 TIR---PDE-VTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 123 ~~~---p~~-~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.+. |+. .+|..|...|.+.|++|+|.++-
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 233 443 67999999999999999998864
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.89 E-value=0.0008 Score=55.82 Aligned_cols=139 Identities=11% Similarity=0.083 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAYMY 84 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~ 84 (153)
-...+......|+.++|+++|.+... .+...+..+...+.+.|++++|..++++..+. .|+ ......+... +
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~--l 93 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILT--L 93 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH--H
Confidence 34455566667777777777777653 24445667777777777777777777776654 232 2333333333 5
Q ss_pred hccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCCchhHhhhh
Q 035927 85 CKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
.+.|+.++|...+++..+ | +.. +..+...+...|..+ ...|+. ..+..+..++...|..++|++.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 677777777777777643 2 344 666666666665555 445654 4455566666777777777765
Q ss_pred cc
Q 035927 151 CN 152 (153)
Q Consensus 151 ~~ 152 (153)
++
T Consensus 173 l~ 174 (765)
T PRK10049 173 ID 174 (765)
T ss_pred HH
Confidence 43
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.89 E-value=2.7e-05 Score=63.73 Aligned_cols=86 Identities=21% Similarity=0.337 Sum_probs=64.6
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC----ChhhHHHHHHHHHhcCCCC-CCCCCHhHHH
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----DKFTWTAMIVGLAISDPFP-TIRPDEVTYV 132 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~~-~~~p~~~t~~ 132 (153)
+++..++..|+.|+.+||..+|.- ||..|+++.|- +|..|.-+ +...|+.++.+...+++.+ .-.|-..||.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiar--Yc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt 87 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIAR--YCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYT 87 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHH--HcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHH
Confidence 566777788888888888888887 68888888887 77777543 4556777777777777777 3457778888
Q ss_pred HHHHHHhcCCchhH
Q 035927 133 GVLSACTHNGNETF 146 (153)
Q Consensus 133 ~ll~~~~~~g~~~~ 146 (153)
.++.+|.+.|++.-
T Consensus 88 ~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHhccchHH
Confidence 88888888887543
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.87 E-value=0.00098 Score=57.69 Aligned_cols=138 Identities=11% Similarity=0.082 Sum_probs=97.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~ 90 (153)
.+...+...|+.++|..+++.- ..+...+..+-..+.+.|++++|++.|+...+.. +.+......+... |...|+.
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~--~~~~g~~ 653 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEV--DIAQGDL 653 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHHCCCH
Confidence 3456677888888898888842 2355566777788888889999998888887653 2356667777776 6888899
Q ss_pred HHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------CCC----C---CHhHHHHHHHHHhcCCchhHhhhh
Q 035927 91 EKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------TIR----P---DEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 91 ~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~~~----p---~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
++|++.++...+. +...+..+..++...|.++ ... | +...+..+...+...|+.++|.+.
T Consensus 654 ~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 654 AAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred HHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999888887653 4555566666666666655 221 2 223455566778899999999988
Q ss_pred cc
Q 035927 151 CN 152 (153)
Q Consensus 151 ~~ 152 (153)
|+
T Consensus 734 y~ 735 (1157)
T PRK11447 734 YK 735 (1157)
T ss_pred HH
Confidence 74
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.87 E-value=0.00093 Score=47.22 Aligned_cols=147 Identities=10% Similarity=0.100 Sum_probs=100.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCh-hHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDE-FTI 75 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-~t~ 75 (153)
.....+-.+...+.+.|++++|...|++... |+ ...+..+...+.+.|++++|...++++.+..- .|.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3445677777888999999999999998763 32 24677788888999999999999999986531 1221 122
Q ss_pred HHHHHHHHHhcc--------CChHHHHHHHHhccc--C-ChhhHH-----------------HHHHHHHhcCCCC-----
Q 035927 76 VRILTAYMYCKC--------GDVEKAQRVLRKMLR--K-DKFTWT-----------------AMIVGLAISDPFP----- 122 (153)
Q Consensus 76 ~~li~~~~~~~~--------g~~~~a~~~~~~m~~--~-~~~~~~-----------------~li~~~~~~~~~~----- 122 (153)
..+-.. +.+. |+.++|.+.|+.+.+ | +...+. .+...+.+.|.++
T Consensus 111 ~~~g~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 111 YLRGLS--NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHH--HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 222222 4443 788999999999864 3 222221 2233444555555
Q ss_pred -----CCCC----CHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -----TIRP----DEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -----~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...| ....+..+..++.+.|+.++|...++
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2223 34678899999999999999988763
No 52
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.87 E-value=0.00057 Score=56.67 Aligned_cols=137 Identities=11% Similarity=0.001 Sum_probs=70.1
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----------CCCCh--
Q 035927 13 VSGYINRGQVDIARQYFAQMPERD-------YVLWTAMIDGYLRVNRFREALTLFPEMQTSN-----------IRPDE-- 72 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----------~~p~~-- 72 (153)
..++...|++++|...|+++.+.+ ......+..++.+.|++++|...++.+.+.. -.|+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 445556666666666666553211 1234444445556666666666666665431 01221
Q ss_pred -hHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHH
Q 035927 73 -FTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSA 137 (153)
Q Consensus 73 -~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~ 137 (153)
..+...... +...|+.++|+++++++.+ | +...+..+...+...|..+ ...||. ..+......
T Consensus 359 ~~a~~~~a~~--l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQV--AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 112222222 4566666666666666543 2 4555555555555555554 444553 344444455
Q ss_pred HhcCCchhHhhhhc
Q 035927 138 CTHNGNETFVINSC 151 (153)
Q Consensus 138 ~~~~g~~~~a~~~~ 151 (153)
+.+.|++++|.+++
T Consensus 437 al~~~~~~~A~~~~ 450 (765)
T PRK10049 437 ALDLQEWRQMDVLT 450 (765)
T ss_pred HHHhCCHHHHHHHH
Confidence 56666666666554
No 53
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.87 E-value=0.00032 Score=46.25 Aligned_cols=103 Identities=9% Similarity=-0.044 Sum_probs=74.4
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCCh
Q 035927 26 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105 (153)
Q Consensus 26 ~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~ 105 (153)
..++++..+-+...+..+-..+.+.|++++|...|+...... +.+...+..+-.. +.+.|++++|...|++..+.+
T Consensus 13 ~~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~--~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 13 EDILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGT--WMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH--HHHHhhHHHHHHHHHHHHhcC-
Confidence 345555544455456667778889999999999999988654 2366666666666 699999999999999998753
Q ss_pred hhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 106 FTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 106 ~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+-.++...|+.++|.+.|
T Consensus 89 -------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 89 -------------------ASHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred -------------------CCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 124566666666777777777776655
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.86 E-value=0.00075 Score=49.75 Aligned_cols=93 Identities=17% Similarity=0.078 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAY 82 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~ 82 (153)
..|..+-..+.+.|+.++|...|++..+ | +...|+.+-..+...|++++|.+.|+...+. .|+ ..++..+-..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~- 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA- 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-
Confidence 4577788889999999999999988863 3 6789999999999999999999999999875 354 3444444444
Q ss_pred HHhccCChHHHHHHHHhcccC
Q 035927 83 MYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+...|++++|.+.|+...+.
T Consensus 142 -l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 142 -LYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred -HHHCCCHHHHHHHHHHHHHh
Confidence 68899999999999998653
No 55
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.85 E-value=0.00015 Score=53.31 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC--CHH---HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER--DYV---LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.....+..+.+.+|++.|.+.++.|++. |.. ...+++....-.+++.+|.-+|+++.+. ..++..+.|.+.-+
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~- 210 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVC- 210 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHH-
Confidence 3444556666666666666666666542 211 1222222222233566666666665433 44555666655555
Q ss_pred HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCch
Q 035927 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNE 144 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 144 (153)
....|++++|++++.+..+.+ +-|..|...++......|+.
T Consensus 211 -~l~~~~~~eAe~~L~~al~~~--------------------~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 211 -HLQLGHYEEAEELLEEALEKD--------------------PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp -HHHCT-HHHHHHHHHHHCCC---------------------CCHHHHHHHHHHHHHHTT-T
T ss_pred -HHHhCCHHHHHHHHHHHHHhc--------------------cCCHHHHHHHHHHHHHhCCC
Confidence 466666666666666655432 12456766777777777776
No 56
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.85 E-value=0.00029 Score=49.23 Aligned_cols=96 Identities=22% Similarity=0.373 Sum_probs=73.5
Q ss_pred CCchhHHHHHHHHHHhc-----CChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcC----------------ChHHHH
Q 035927 3 NKDVISWTDIVSGYINR-----GQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVN----------------RFREAL 57 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~-----g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~----------------~~~~a~ 57 (153)
..|..+|..+++.|.+. |.++=...-+..|. +.|..+|+.||+.+-+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 46788999999999876 55555555555555 469999999999988642 246899
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhc
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV-EKAQRVLRKM 100 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~-~~a~~~~~~m 100 (153)
+++++|...|+.||..|+..+++.+ ++.+.+ .+.+++.-.|
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iF--G~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIF--GRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHh--ccccHHHHHHHHHHHHH
Confidence 9999999999999999999999994 776653 4444444444
No 57
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.00095 Score=49.15 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=86.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC--Ch
Q 035927 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG--DV 90 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g--~~ 90 (153)
...+...|++++|++++++- .+.......+..+.+.++++.|...++.|++.+ +..+...+..+......| .+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhH
Confidence 34566789999999999876 566777888999999999999999999999763 335555555553122333 69
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 91 EKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 91 ~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
++|..+|+++.++ ..++..+.+.+..+....|++++|.+++
T Consensus 184 ~~A~y~f~El~~~--------------------~~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 184 QDAFYIFEELSDK--------------------FGSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp CHHHHHHHHHHCC--------------------S--SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHhc--------------------cCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999774 4577888888999999999999998764
No 58
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.79 E-value=0.0015 Score=56.62 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=49.2
Q ss_pred HhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhHhhh
Q 035927 84 YCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
|.+.|+.++|++.|++..+ | +...+..+...+...|.++ ...|+ ...+..+..++.+.|+.++|.+
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 5777888888888887754 3 5677777777777777766 34454 3456666777778888888887
Q ss_pred hcc
Q 035927 150 SCN 152 (153)
Q Consensus 150 ~~~ 152 (153)
+|+
T Consensus 693 ~~~ 695 (1157)
T PRK11447 693 TFN 695 (1157)
T ss_pred HHH
Confidence 764
No 59
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.79 E-value=0.0012 Score=42.52 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
|..++.++|.++++.|+++....+.++.-. |+...-.+++.+|+..+++..|+.+++.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567889999999999999999988877642 4677788888888888888888888888864
Q ss_pred C-CCCCChhHHHHHHHHH
Q 035927 66 S-NIRPDEFTIVRILTAY 82 (153)
Q Consensus 66 ~-~~~p~~~t~~~li~~~ 82 (153)
. +++.+..+|..|++=+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 4 7777788888888765
No 60
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.78 E-value=4.6e-05 Score=45.37 Aligned_cols=77 Identities=22% Similarity=0.410 Sum_probs=57.1
Q ss_pred cCChHHHHHHHHhCCC--C---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHH
Q 035927 19 RGQVDIARQYFAQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a 93 (153)
.|+++.|+.+++++.+ | +...+-.+...+.+.|++++|..+++. . +..|+......++.-| +.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~-~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARC-LLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHH-HHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHH-HHHhCCHHHH
Confidence 5789999999999973 3 334455588999999999999999988 3 2334444555555555 8999999999
Q ss_pred HHHHHh
Q 035927 94 QRVLRK 99 (153)
Q Consensus 94 ~~~~~~ 99 (153)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.76 E-value=0.00061 Score=52.46 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHH-HHHHHHH--HhcCChHHHHHHHHHHhhCCCCCChh--H-HH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLW-TAMIDGY--LRVNRFREALTLFPEMQTSNIRPDEF--T-IV 76 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~-~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~--t-~~ 76 (153)
+...+-.+...+.+.|+.++|..++++..+ ||...- -.++..+ ...++.+.++..++...+. .|+.. . ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHH
Confidence 455566666666666666666666666653 322210 0122222 2235556666666555443 23333 2 22
Q ss_pred HHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 77 RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 77 ~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
++-.. +.+.|++++|.+.|+....- ...|+...+..+...+.+.|+.++|.++++
T Consensus 340 sLg~l--~~~~~~~~~A~~~le~a~a~-------------------~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 340 ALGQL--LMKHGEFIEAADAFKNVAAC-------------------KEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHH--HHHcccHHHHHHHHHHhHHh-------------------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333 46666666666666632211 235888888899999999999999988874
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=97.72 E-value=0.0011 Score=52.97 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...+..+-..+...|++++|...+++..+ |+ ...+..+...+...|++++|...+++..+.. .|+.......+..
T Consensus 371 ~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~ 449 (553)
T PRK12370 371 SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVM 449 (553)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHH
Confidence 455688888899999999999999999864 43 2333444555667899999999999987653 3555554455555
Q ss_pred HHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcC
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISD 119 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~ 119 (153)
+ |...|+.++|.+.+.++... +....+.+...|+..+
T Consensus 450 ~-l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 450 F-LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred H-HHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 4 78999999999999998643 3444555555555554
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.71 E-value=0.0011 Score=46.17 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=74.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHhhCCCCC-ChhHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGY-LRVNR--FREALTLFPEMQTSNIRP-DEFTI 75 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p-~~~t~ 75 (153)
+.|...|..+-..|...|++++|...|++..+ | +...+..+-..+ .+.|+ .++|..++++..+.+ | +...+
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al 147 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTAL 147 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHH
Confidence 45677789999999999999999999998863 3 777788777764 56666 589999999998764 4 33444
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
..+-.. +.+.|++++|...|+++.+.
T Consensus 148 ~~LA~~--~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 148 MLLASD--AFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHH--HHHcCCHHHHHHHHHHHHhh
Confidence 444443 68999999999999998653
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00066 Score=39.48 Aligned_cols=92 Identities=20% Similarity=0.292 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
++..+...+.+.|++++|...+++..+ | +...+..+...+...+++++|.+.++...+..- .+..++..+... +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~--~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLA--Y 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHH--H
Confidence 466778888999999999999998753 3 446788888888899999999999999877542 233456666665 6
Q ss_pred hccCChHHHHHHHHhccc
Q 035927 85 CKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~ 102 (153)
...|+.+.|.+.+....+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 899999999999988754
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.69 E-value=0.0041 Score=47.80 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=44.8
Q ss_pred HhcCChHHHHHHHHhCCC--CCHHHHH--HHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHhccCChH
Q 035927 17 INRGQVDIARQYFAQMPE--RDYVLWT--AMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~--~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~g~~~ 91 (153)
.+.|+++.|.+.+.++.+ |+..... .....+...|++++|...++...+.. |+ ......+... |.+.|+|+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~--~~~~gdw~ 204 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQA--YIRTGAWS 204 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHH--HHHHHhHH
Confidence 566666666666666653 2322222 12345555666666666666665543 43 3333333333 56666666
Q ss_pred HHHHHHHhccc
Q 035927 92 KAQRVLRKMLR 102 (153)
Q Consensus 92 ~a~~~~~~m~~ 102 (153)
+|.+++..+.+
T Consensus 205 ~a~~~l~~l~k 215 (398)
T PRK10747 205 SLLDILPSMAK 215 (398)
T ss_pred HHHHHHHHHHH
Confidence 66666666653
No 66
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.67 E-value=0.0022 Score=48.39 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=92.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC---------------------------------------------CH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPER---------------------------------------------DY 37 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------------------------------------~~ 37 (153)
+.++..-.....+|.+.|++.....+..+|.+. ++
T Consensus 184 pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p 263 (400)
T COG3071 184 PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP 263 (400)
T ss_pred cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh
Confidence 345556777777888888888888888887641 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc---CChhhHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVG 114 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~ 114 (153)
..-.+++.-+.+.|+.++|.++..+-.+++..|. .-.++.. .+-++.+.-++..++-.+ .++-.+.++-.-
T Consensus 264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~---l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L 337 (400)
T COG3071 264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPR---LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL 337 (400)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhh---cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 3344445555555556666666665555554444 2222322 444444444444444322 145566667777
Q ss_pred HHhcCCCC----------CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 115 LAISDPFP----------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 115 ~~~~~~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|.+.+.|. ...|+..+|+.+-.++.+.|+.++|-++++
T Consensus 338 ~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 338 ALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 77777776 677999999999999999999999988764
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.65 E-value=0.0013 Score=54.85 Aligned_cols=138 Identities=11% Similarity=0.055 Sum_probs=80.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCHHH-HHHH--HHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPERDYVL-WTAM--IDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
.++..+...|+.++|...+++...|+... +..+ ...+...|++++|.++++++.+..- -+...+..++.. |.+.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~--y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMT--QADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH--Hhhc
Confidence 66777777777777777777776553222 2222 3455566777777777777765531 123333344444 5777
Q ss_pred CChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC------------CCCCC-HhHHHHHHHHHhcCCchhHhhhhc
Q 035927 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------------TIRPD-EVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 88 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------------~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
++.++|++.++++.+.+......+..++...+.-. ...|+ ...+.-++.+..+.|....|.++.
T Consensus 150 ~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 150 GRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred CCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777777776543333233444555532111 44454 455566667777777777766653
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.63 E-value=0.00094 Score=42.97 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
+......+...+.+.|++++|...++.....+ +.+...+..+-.. |.+.|+++.|...++...+.+
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~----------- 81 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAAC--CQMLKEYEEAIDAYALAAALD----------- 81 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcC-----------
Confidence 45566777788889999999999999998754 2344555555554 789999999999999987642
Q ss_pred HhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 116 AISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 116 ~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+-..+...|+.++|.+.|
T Consensus 82 ---------p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 82 ---------PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred ---------CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 124555666666777777777776655
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.56 E-value=0.0093 Score=49.96 Aligned_cols=138 Identities=11% Similarity=0.075 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--RDY--VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
|...| ...+.|+++.|...|.+..+ |+. ..+ .++..+...|+.++|+..+++... .-.........+... |
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~l--y 112 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARA--Y 112 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHH--H
Confidence 43333 46789999999999999974 432 234 888888899999999999999982 111222333333334 6
Q ss_pred hccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 85 CKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
...|++++|.++|+++.+. +...+..++..+...+..+ ...|+...+..++..+...++..+|++.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 8889999999999999653 4566666667677775555 55677666633333333344444466554
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.56 E-value=0.0025 Score=44.29 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC--hHHHHHHHHhcccC
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD--VEKAQRVLRKMLRK 103 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~--~~~a~~~~~~m~~~ 103 (153)
|...|..+-..+...|++++|...++...+.. +-+...+..+-.+. |.+.|+ .++|.+++++..+.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL-~~~~g~~~~~~A~~~l~~al~~ 139 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVL-YYQAGQHMTPQTREMIDKALAL 139 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHh
Confidence 66778888888888888888888888877653 12455555555542 466676 48888888888654
No 71
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.00075 Score=49.43 Aligned_cols=121 Identities=12% Similarity=0.166 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHH-----HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVL-----WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.+|..+|...-+.+.++.|..+|.+..+.+..+ ..++|..+ ..++.+.|..+|+...+. +.-+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478999999999999999999999998643333 33333322 256777799999999865 56688888999987
Q ss_pred HHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC---HhHHHHHHHHHhcCCchhHhhhhc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD---EVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+.|+.+.|..+|++..+. +.++ ...|...++.=.+.|+++.+.++.
T Consensus 80 --l~~~~d~~~aR~lfer~i~~--------------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 80 --LIKLNDINNARALFERAISS--------------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp --HHHTT-HHHHHHHHHHHCCT--------------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred --HHHhCcHHHHHHHHHHHHHh--------------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 69999999999999999874 1122 235666666666667666665543
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.55 E-value=0.0053 Score=47.29 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=84.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhH-------HHHHHHH
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT-------IVRILTA 81 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-------~~~li~~ 81 (153)
....+...|++++|...++++.+ | +......+...+.+.|++++|.+++..+.+.+..++... +...+..
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45666677888888888888763 3 666777888888888888888888888877764322211 1111100
Q ss_pred ---------H-----------------------HHhccCChHHHHHHHHhccc--CChhh-HHHHHHHHHhc--CCCC--
Q 035927 82 ---------Y-----------------------MYCKCGDVEKAQRVLRKMLR--KDKFT-WTAMIVGLAIS--DPFP-- 122 (153)
Q Consensus 82 ---------~-----------------------~~~~~g~~~~a~~~~~~m~~--~~~~~-~~~li~~~~~~--~~~~-- 122 (153)
+ .+.+.|+.++|.+++++..+ ||... ...++..+... +..+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHH
Confidence 0 35667777777777777654 22211 00122222222 1111
Q ss_pred --------CCCCCHh---HHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 --------TIRPDEV---TYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 --------~~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...|+.. ...++-..|.+.|++++|.+.|+
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3445544 45677888889999999988775
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.55 E-value=0.0019 Score=50.97 Aligned_cols=143 Identities=14% Similarity=0.192 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC-------CHHHHHH----HHHHHHhcCChHHHHHHHHHHhh---CCCCCChh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER-------DYVLWTA----MIDGYLRVNRFREALTLFPEMQT---SNIRPDEF 73 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-------~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~ 73 (153)
++..|...|...|+++.|..++.+-.+. +.....+ +-..|...+++++|..+|+++.. ....++..
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555999999999999999999877532 3333333 44466677999999999999964 22334333
Q ss_pred H----HHHHHHHHHHhccCChHHHHHHHHhccc-------C---C-hhhHHHHHHHHHhcCCCC---------------C
Q 035927 74 T----IVRILTAYMYCKCGDVEKAQRVLRKMLR-------K---D-KFTWTAMIVGLAISDPFP---------------T 123 (153)
Q Consensus 74 t----~~~li~~~~~~~~g~~~~a~~~~~~m~~-------~---~-~~~~~~li~~~~~~~~~~---------------~ 123 (153)
. ++-|-.. |.+.|++++|...++...+ . . ....+.+...++..+.++ -
T Consensus 281 ~va~~l~nLa~l--y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 281 AVAATLNNLAVL--YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHH--HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3 3333333 7999999998888777632 1 1 223555666666666666 1
Q ss_pred CCCC----HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 124 IRPD----EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 124 ~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..++ ..+++.+-..|.+.|++++|.++|+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 2232 3779999999999999999999875
No 74
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00082 Score=51.82 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
.||..+-+.|+-.++-++|...|++-.+- ....|+.|-.-|..-.+...|.+-++..++-+ +-|-..|=.+=++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa-- 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA-- 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH--
Confidence 46666777777777777777777766532 34567777777777677777777776666543 3466666666666
Q ss_pred HhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhcCCchhHhhh
Q 035927 84 YCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
|.-.+-..-|+-.|++..+ | |...|.+|-..|.+.+.++ .-..+...+..+-+.|-+.++.++|.+
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 4666666666666666532 2 5555555555555554444 011233556666666666666666655
Q ss_pred hc
Q 035927 150 SC 151 (153)
Q Consensus 150 ~~ 151 (153)
.|
T Consensus 488 ~y 489 (559)
T KOG1155|consen 488 YY 489 (559)
T ss_pred HH
Confidence 54
No 75
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.51 E-value=0.0022 Score=39.98 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC-ChhHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRP-DEFTIVRI 78 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~t~~~l 78 (153)
.++-.+...+.+.|++++|...|.++.+ |+ ...+..+...+.+.|++++|.+.++...... -.| ....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4567778888999999999999999963 32 3467778899999999999999999998642 111 23344444
Q ss_pred HHHHHHhccCChHHHHHHHHhcccC
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
... |.+.|+.++|.+.++.+.+.
T Consensus 83 ~~~--~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMS--LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHH--HHHhCChHHHHHHHHHHHHH
Confidence 444 68999999999999998653
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.0026 Score=49.26 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=66.6
Q ss_pred hcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHH
Q 035927 18 NRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 18 ~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a 93 (153)
+.|++++|+++|-++.. .+......+.+-|-...+..+|.+++.+. ..+.| |......+-.. |-+.|+-..|
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~--~slip~dp~ilskl~dl--ydqegdksqa 611 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPNDPAILSKLADL--YDQEGDKSQA 611 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCCHHHHHHHHHH--hhcccchhhh
Confidence 44555566555555432 24444444444444445555555554332 22333 33334444443 5666666555
Q ss_pred HHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHh-cCCchhHhhhhcc
Q 035927 94 QRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACT-HNGNETFVINSCN 152 (153)
Q Consensus 94 ~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~ 152 (153)
.+.+-.--. | |..+-..+..-|.....++ -+.|+.+-|..++..|. +.|++.+|+++|+
T Consensus 612 fq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 612 FQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 554332211 1 3333333333333332222 34588888888887777 6788888887764
No 77
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.00099 Score=51.43 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
|..++|..|.+.|..+.+++++..=.. ||..+||.||+.+.+.|++..|.++...|...+...+..|+...+.+|
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 456999999999999999999977554 799999999999999999999999999998888778888888888887
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0022 Score=47.76 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=67.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
|-+.||--|-+.|.+..++..|+.++.+-.. | |+.--..+.+-+-.-++.++|.++++...+.. ..++.....+-.
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~ 332 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAV 332 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeee
Confidence 5556666666777777777777776666542 2 33333334444444456666666666555432 223334444444
Q ss_pred HHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
+ |.-.++++-|++.++++.+- +...|+.+--+|...+.++
T Consensus 333 ~--yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 333 G--YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred c--cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 4 56677777777777777653 5666777666666665555
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.44 E-value=0.013 Score=41.95 Aligned_cols=116 Identities=19% Similarity=0.223 Sum_probs=80.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.|....+.......+.|++..|...|++... +|...|+.+--+|-+.|+.++|..-|.+..+- .|+..+.-.=+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlg 175 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLG 175 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHH
Confidence 3444556677888888999999888888864 37888888888888889998888888887764 332222222222
Q ss_pred HHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~ 122 (153)
.. |.-.|+.+.|..++..-.. .|...-..+.......|+++
T Consensus 176 ms-~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 176 MS-LLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HH-HHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 21 5778888888888887642 25556666666666666665
No 80
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.0019 Score=51.49 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC----------------------------------CCHHHHH---HHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE----------------------------------RDYVLWT---AMIDGY 47 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~----------------------------------~~~~~~~---~li~~~ 47 (153)
.+.+|.++-+.|+-.++-+.|++.|++-.+ .|+.+|| .|--.|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 356777777777777777777777777653 2333333 344445
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC--
Q 035927 48 LRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP-- 122 (153)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~-- 122 (153)
.+.++++.|+-.|+..++ +.|.-...-.-++.. +-+.|+.++|++++++..- | |+.+---.+..+...+..+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~-~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRI-QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred eccchhhHHHHHHHhhhc--CCccchhHHhhhhHH-HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 566666666666665554 345444333334442 6777777777777777632 2 3222111222222222211
Q ss_pred --------CCCCCH-hHHHHHHHHHhcCCchhHhhhhc
Q 035927 123 --------TIRPDE-VTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 123 --------~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.+.|+. ..|..+.+.|-+.|+.+.|+.-|
T Consensus 577 l~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 577 LQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 666876 44778889999999999998755
No 81
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.39 E-value=0.0022 Score=37.20 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhc
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 118 (153)
.+..+...+...|++++|...+++..+..- .+...+..+... +...|++++|.+.|+...+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~-------------- 64 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAA--YYKLGKYEEALEDYEKALELD-------------- 64 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCC--------------
Confidence 355677778889999999999999876531 233445445554 688999999999999986642
Q ss_pred CCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 119 DPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 119 ~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+...+...|+.++|.+.+
T Consensus 65 ------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 65 ------PDNAKAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred ------CcchhHHHHHHHHHHHHHhHHHHHHHH
Confidence 123356777778888888888887765
No 82
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.35 E-value=0.0037 Score=40.34 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHH--h-------------hCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEM--Q-------------TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m--~-------------~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
|..++..+|-++++.|+++...++++.. + .....|+..+..+++.+ |+..|++..|.++.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~s--f~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHS--FGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHH--HHhcccHHHHHHHHHHH
Confidence 4678899999999999999999988765 1 12356999999999999 69999999999999999
Q ss_pred ccC
Q 035927 101 LRK 103 (153)
Q Consensus 101 ~~~ 103 (153)
.+.
T Consensus 79 s~~ 81 (126)
T PF12921_consen 79 SRK 81 (126)
T ss_pred HHH
Confidence 765
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.32 E-value=0.0099 Score=42.08 Aligned_cols=141 Identities=13% Similarity=0.172 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
+...|--.|.+.|+...|..-+++..+ | +..+|.++-..|-+.|+.+.|.+-|+...+. .|+.....-=-+++ +
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~F-L 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAF-L 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHH-H
Confidence 456677788899999999999988874 3 5668888888888999999999999888765 35444433344454 6
Q ss_pred hccCChHHHHHHHHhccc-CC----hhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhHhh
Q 035927 85 CKCGDVEKAQRVLRKMLR-KD----KFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~-~~----~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~a~ 148 (153)
|..|++++|...|+.... |+ ..+|..+--+..+.|.+. ..-|+ ..+...+.......|+.-.|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 889999999999988754 42 345555555555556655 23343 355666667777777777666
Q ss_pred hhc
Q 035927 149 NSC 151 (153)
Q Consensus 149 ~~~ 151 (153)
..+
T Consensus 194 ~~~ 196 (250)
T COG3063 194 LYL 196 (250)
T ss_pred HHH
Confidence 554
No 84
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.29 E-value=0.0076 Score=45.02 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
+.+.-|.-+...|+...|.++-.+..-|+..-|-..+++++..+++++-..+-. + +-+.+.|..++.+| .+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~---s---kKsPIGyepFv~~~--~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK---S---KKSPIGYEPFVEAC--LKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh---C---CCCCCChHHHHHHH--HHC
Confidence 345567777888999999999999998999999999999999999987665432 2 22458899999997 788
Q ss_pred CChHHHHHHHHhccc
Q 035927 88 GDVEKAQRVLRKMLR 102 (153)
Q Consensus 88 g~~~~a~~~~~~m~~ 102 (153)
|..++|..++.++..
T Consensus 251 ~~~~eA~~yI~k~~~ 265 (319)
T PF04840_consen 251 GNKKEASKYIPKIPD 265 (319)
T ss_pred CCHHHHHHHHHhCCh
Confidence 889999988888443
No 85
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.016 Score=38.93 Aligned_cols=89 Identities=12% Similarity=-0.013 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP--ER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~--~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
..|..+...+...|++++|...|++.. .+ ...+|..+-..+.+.|+.++|+..++...+.. +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 346677777778888888888888774 22 23467778788888888888888888877542 122333443333
Q ss_pred HHHHh-------ccCChHHHHHHHH
Q 035927 81 AYMYC-------KCGDVEKAQRVLR 98 (153)
Q Consensus 81 ~~~~~-------~~g~~~~a~~~~~ 98 (153)
. |. +.|+++.|+..++
T Consensus 115 i--~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 I--CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred H--HHHhhHHHHHcccHHHHHHHHH
Confidence 3 34 6777664444443
No 86
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.017 Score=45.04 Aligned_cols=135 Identities=15% Similarity=0.079 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
.+.-.+.+.|--..+..+|++++-+..+ .|+...+-|-+.|-+.|+-.+|.+.+-+--+ =++.+..|..++-..
T Consensus 559 evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ay-- 635 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAY-- 635 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHH--
Confidence 3444566666667777777777766653 2677777777777777777777665543221 134466666666554
Q ss_pred HhccCChHHHHHHHHhc--ccCChhhHHHHHHHHHhc-CCCC-----------CCCCCHhHHHHHHHHHhcCCch
Q 035927 84 YCKCGDVEKAQRVLRKM--LRKDKFTWTAMIVGLAIS-DPFP-----------TIRPDEVTYVGVLSACTHNGNE 144 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m--~~~~~~~~~~li~~~~~~-~~~~-----------~~~p~~~t~~~ll~~~~~~g~~ 144 (153)
|....=+++++..|++. .+|+..-|-.|+..|.++ |.++ .++-|.....-+++-|...|..
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 57777777777777764 577777777777776665 4444 4445667777777777776654
No 87
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.26 E-value=0.0062 Score=37.86 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
.++-.+...+.+.|++++|.+.++.+.+..- .| .......+... +.+.|+++.|.+.|+.+.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p---------- 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEA--YYAQGKYADAAKAFLAVVKKYP---------- 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHCC----------
Confidence 3556677788899999999999999986431 11 12233344444 7999999999999999875310
Q ss_pred HhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 116 AISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 116 ~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-......+..+..++.+.|+.++|.+.+
T Consensus 71 -------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 99 (119)
T TIGR02795 71 -------KSPKAPDALLKLGMSLQELGDKEKAKATL 99 (119)
T ss_pred -------CCCcccHHHHHHHHHHHHhCChHHHHHHH
Confidence 01112344556666666777777776655
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.0028 Score=35.73 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=36.1
Q ss_pred HhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 48 LRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
.+.|++++|+.+|+...+.. | +....-.+..+ |.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~--~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQC--YLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHH--HHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHH
Confidence 46788888888888887652 4 44444445554 68888888888888888654
No 89
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.0094 Score=47.99 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAY 82 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~ 82 (153)
..||.|.+++-..|++.+|...+.+-.. | -..+.+.|-..+-..|.+++|..+|....+- .|. ...++-+-..
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i- 397 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASI- 397 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHH-
Confidence 3466666666666666666666665542 2 2344555556666666666666666655542 232 2334444443
Q ss_pred HHhccCChHHHHHHHHhccc--CC-hhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCCchhHhh
Q 035927 83 MYCKCGDVEKAQRVLRKMLR--KD-KFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g~~~~a~ 148 (153)
|-+.|++++|+.-+++..+ |+ .-.|+.+-..|-..|+.+ .+.|.- ..++.+-..|-..|++.+|+
T Consensus 398 -~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 398 -YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred -HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence 5677777777777776643 33 335555555555555555 455653 55777777778888888877
Q ss_pred hhc
Q 035927 149 NSC 151 (153)
Q Consensus 149 ~~~ 151 (153)
+-|
T Consensus 477 ~sY 479 (966)
T KOG4626|consen 477 QSY 479 (966)
T ss_pred HHH
Confidence 765
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.009 Score=48.10 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
..+|+.+-+.+-..|++++|..+++.+.+ | ....|-.+-.++...|+.+.|.+.|.+.++-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 35788899999999999999999999864 3 5678888999999999999888888777664
No 91
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.21 E-value=0.002 Score=42.25 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCChhH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT-----SNIRPDEFT 74 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t 74 (153)
...++..+...|++++|..+..+... | +...|..+|.++.+.|+..+|...|+.+.+ -|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444455556666666666666542 2 555666666666666666666666665532 356665544
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.20 E-value=0.041 Score=39.09 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=105.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
+..+|..+...|-+.|..+.|.+-|++-.+ .+....|.---.+|..|.+++|...|++......-| -..||.-+.-
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 345699999999999999999999998763 366777777778889999999999999998875433 3345554444
Q ss_pred HHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhcCCchhH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~~g~~~~ 146 (153)
+ ..+.|+.+.|...|++-.+. ...+.-.+..-..+.+..- +..++..+...-|+---..|+-+.
T Consensus 148 C--al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 148 C--ALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred H--HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 3 58999999999999998653 3444445555555554443 455888888888887777787766
Q ss_pred hh
Q 035927 147 VI 148 (153)
Q Consensus 147 a~ 148 (153)
+-
T Consensus 226 a~ 227 (250)
T COG3063 226 AQ 227 (250)
T ss_pred HH
Confidence 53
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.16 E-value=0.0013 Score=37.10 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=49.7
Q ss_pred HhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 17 INRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
.+.|++++|.++|++.. .| +...+-.+...+.+.|++++|..+++..... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46899999999999986 34 7788889999999999999999999999875 46656665554
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.16 E-value=0.012 Score=43.92 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=82.1
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 14 SGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLR----VNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
..+...|++++|..++++..+ | +...+.. ...+.. .+....+...+.. ..+..|+......++..+ +..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~-~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFG-LEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHH-HHH
Confidence 345667888888888887652 3 3434442 222222 3444444444433 122234433333333332 688
Q ss_pred cCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CC---CCCH--hHHHHHHHHHhcCCchhHhh
Q 035927 87 CGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TI---RPDE--VTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~---~p~~--~t~~~ll~~~~~~g~~~~a~ 148 (153)
.|++++|.+.+++..+ | +...+..+...+...|.++ .. .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999999888854 2 4666777777777777766 22 1333 34667888889999999998
Q ss_pred hhcc
Q 035927 149 NSCN 152 (153)
Q Consensus 149 ~~~~ 152 (153)
++|+
T Consensus 207 ~~~~ 210 (355)
T cd05804 207 AIYD 210 (355)
T ss_pred HHHH
Confidence 8774
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.14 E-value=0.014 Score=45.38 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=77.0
Q ss_pred HhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHH
Q 035927 17 INRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a 93 (153)
...|++++|+..++.+. .| |+.-+....+.+.+.++.++|.+.++.++.. .|+.........- +|.+.|++++|
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~-all~~g~~~ea 393 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQ-ALLKGGKPQEA 393 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHH-HHHhcCChHHH
Confidence 34566777777777764 34 5556666667777788888888888887764 4654333333332 26788888888
Q ss_pred HHHHHhcccC---ChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhh
Q 035927 94 QRVLRKMLRK---DKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 94 ~~~~~~m~~~---~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
+++++..... |...|..+..+|...|... .-....-.+++..|++++|+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~------~a~~A~AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRA------EALLARAEGYALAGRLEQAIIF 447 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchH------HHHHHHHHHHHhCCCHHHHHHH
Confidence 8888777542 5666666666666665433 2223344555556666655543
No 96
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.13 E-value=0.026 Score=37.70 Aligned_cols=74 Identities=11% Similarity=-0.016 Sum_probs=42.1
Q ss_pred HHHHHhCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 26 RQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 26 ~~l~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+..+..+. +.+....-.+-..+...|++++|..+|+....- -|....|--=+.+| +-..|++++|+..|.....
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~-~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGEC-CQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH-HHHHhhHHHHHHHHHHHHh
Confidence 33444444 344444445555555677777777777766553 24444444444444 5677777777777776643
No 97
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.012 Score=43.69 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-CCH------HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-RDY------VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
+--+|-+.|-+.|.+|.|+++-..+.. ||. ..--.|-.-|-..|-++.|+++|..+.+.|. .-......++.
T Consensus 71 ~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~ 149 (389)
T COG2956 71 AHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHH
Confidence 345677788889999999999888764 432 2345566666778889999999988887653 34456677777
Q ss_pred HHHHhccCChHHHHHHHHhcccCChhhHHH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTA 110 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 110 (153)
. |-+..+|++|+++-+++.+.+...|+.
T Consensus 150 I--YQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 150 I--YQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred H--HHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 7 688889999988888776544333333
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.13 E-value=0.012 Score=44.53 Aligned_cols=87 Identities=15% Similarity=0.125 Sum_probs=71.1
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC
Q 035927 13 VSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~ 89 (153)
...+...|++++|+++|++..+ | +...|..+..++.+.|++++|+..+++.++.. +.+...|..+-.+ |.+.|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~--~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTA--CMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH--HHHhCC
Confidence 4567788999999999999873 3 67788889999999999999999999998753 2245555555555 699999
Q ss_pred hHHHHHHHHhccc
Q 035927 90 VEKAQRVLRKMLR 102 (153)
Q Consensus 90 ~~~a~~~~~~m~~ 102 (153)
+++|+..|++..+
T Consensus 86 ~~eA~~~~~~al~ 98 (356)
T PLN03088 86 YQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999865
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.13 E-value=0.032 Score=37.66 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILT 80 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~ 80 (153)
.+..+...+.+.|++++|...|++..+ ++ ...+..+...+.+.|++++|...+++..+. .|+ ...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 466666777778888888888877652 22 356777777788888888888888887764 243 333333333
Q ss_pred HHHHhccCC
Q 035927 81 AYMYCKCGD 89 (153)
Q Consensus 81 ~~~~~~~g~ 89 (153)
. |...|+
T Consensus 115 ~--~~~~g~ 121 (172)
T PRK02603 115 I--YHKRGE 121 (172)
T ss_pred H--HHHcCC
Confidence 2 566555
No 100
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0026 Score=35.59 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=34.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 44 IDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
-..+.+.|++++|...|++.++.. |+..-....+.-+ +.+.|++++|...|+...+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~-~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRI-LYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHH-HHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777654 5444444444443 6777777777777777643
No 101
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.032 Score=43.66 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
|=..+..=-..|++..|.++|++-. +|+...|.+.|+.=.+-..++.|..+++.++-.. |++.+|--..+- =.+
T Consensus 144 WyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarF--E~k 219 (677)
T KOG1915|consen 144 WYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARF--EEK 219 (677)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHH--HHh
Confidence 3334444556788999999998875 6899999999999999999999999999998543 899888888876 378
Q ss_pred cCChHHHHHHHHhccc
Q 035927 87 CGDVEKAQRVLRKMLR 102 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~ 102 (153)
+|....+..+|....+
T Consensus 220 ~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 220 HGNVALARSVYERAIE 235 (677)
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999998887754
No 102
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.013 Score=42.46 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 51 NRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+.+.+|.-+|++|.++ ..|+..+.+...-++ ...|++++|+.+++....+
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~--l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCH--LQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHH--HHhcCHHHHHHHHHHHHhc
Confidence 3455566666665442 345555555555553 5566666666666665543
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0012 Score=39.22 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=55.1
Q ss_pred cCChHHHHHHHHHHhhCCC-CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC-
Q 035927 50 VNRFREALTLFPEMQTSNI-RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD- 127 (153)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~- 127 (153)
.|+++.|+.+++++.+..- .|+...+-.+..+ |.+.|++++|..+++. .+. .|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~--~~~~~~y~~A~~~~~~-~~~---------------------~~~~ 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQC--YFQQGKYEEAIELLQK-LKL---------------------DPSN 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHH--HHHTTHHHHHHHHHHC-HTH---------------------HHCH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHH--HHHCCCHHHHHHHHHH-hCC---------------------CCCC
Confidence 5789999999999987642 2233333334444 7999999999999999 332 233
Q ss_pred HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 128 EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 128 ~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
......+..+|.+.|++++|+++|.
T Consensus 58 ~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 58 PDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3444455788889999999998874
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.01 E-value=0.0075 Score=39.58 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=61.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE--RDY----VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~--~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
+-..+...|++++|...|+.... ++. ...-.|...+...|++++|+..++......+.| . +..+.+-. |.
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~--~-~~~~~Gdi-~~ 129 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKA--L-AAELLGDI-YL 129 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHH--H-HHHHHHHH-HH
Confidence 44678889999999999999874 332 244456777788999999999997754433322 2 33344443 89
Q ss_pred ccCChHHHHHHHHh
Q 035927 86 KCGDVEKAQRVLRK 99 (153)
Q Consensus 86 ~~g~~~~a~~~~~~ 99 (153)
+.|+.++|...|+.
T Consensus 130 ~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 130 AQGDYDEARAAYQK 143 (145)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999999975
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.99 E-value=0.019 Score=41.26 Aligned_cols=99 Identities=18% Similarity=0.131 Sum_probs=82.6
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 2 ~~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
.+||-..||.+--+|-+.|++++|..-|.+..+ .+....|.|...+.-.|++++|..++......+-....+-=|..
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 368999999999999999999999999988763 47788888888899999999999999999887765555555544
Q ss_pred HHHHHHhccCChHHHHHHHHhcccC
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+- ....|++++|+++...-..+
T Consensus 210 l~---~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 210 LV---VGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred HH---HhhcCChHHHHhhccccccc
Confidence 44 48999999999998876655
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.94 E-value=0.027 Score=46.70 Aligned_cols=128 Identities=18% Similarity=0.314 Sum_probs=95.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
+...|..+..++.+.|++++|+.+|..+... +...|--+-+.|-..|..++|.+.++..+.. .||..--.+=+.
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~La 490 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLA 490 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHH
Confidence 4566889999999999999999999999742 6778999999999999999999999999864 466555555555
Q ss_pred HHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 146 (153)
.. |-+.|+.++|.+++..|..||... ..-++..|+...-......+.+.|+.|+
T Consensus 491 sl-~~~~g~~EkalEtL~~~~~~D~~~-----------~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 491 SL-YQQLGNHEKALETLEQIINPDGRN-----------AEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HH-HHhcCCHHHHHHHHhcccCCCccc-----------hhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 54 789999999999999997765220 0000334555554555555556665554
No 107
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.93 E-value=0.041 Score=35.15 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=75.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC---C---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---hhHHHHHHHHH
Q 035927 12 IVSGYINRGQVDIARQYFAQMPER---D---YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD---EFTIVRILTAY 82 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~ 82 (153)
+-.++-..|+.++|+.+|++-... + ...+-.+-+.+-..|++++|..++++....- |+ ......+...+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 345677789999999999987632 1 2356667777888899999999999987642 44 33344443332
Q ss_pred HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHh
Q 035927 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI 117 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 117 (153)
+...|+.++|...+-....++...|.--|..|+.
T Consensus 85 -L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 -LYNLGRPKEALEWLLEALAETLPRYRRAIRFYAD 118 (120)
T ss_pred -HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6889999999999988777766677777776654
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.86 E-value=0.057 Score=44.57 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
.....+...+.+.+++++|....++... | +....+.+-..+.+.|+.++|..+|++....+ .-+..++..+-..
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~-- 197 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQS-- 197 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHH--
Confidence 3477788899999999999999999974 4 66778888888899999999999999999832 2346777777777
Q ss_pred HhccCChHHHHHHHHhccc---CChhhHHHHHHH
Q 035927 84 YCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVG 114 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~ 114 (153)
+-+.|+.++|...|++..+ ++...|+..+.-
T Consensus 198 l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDAIGDGARKLTRRLVD 231 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHH
Confidence 5899999999999999853 456666655443
No 109
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.86 E-value=0.019 Score=42.12 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=77.4
Q ss_pred HHHHHHHhCC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC-------
Q 035927 24 IARQYFAQMP--ERDYVLWTAMIDGYLRV-----NRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD------- 89 (153)
Q Consensus 24 ~a~~l~~~m~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~------- 89 (153)
.....|+... ++|-.+|-.++..|... ++++--...++.|.+-|+.-|..+|+.||+.+ -.|.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~Llnvf---PKgkfiP~nvf 128 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVF---PKGKFIPQNVF 128 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhC---cccccccHHHH
Confidence 3455666666 56888999999888754 56787788889999999999999999999984 3333
Q ss_pred ----------hHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCch
Q 035927 90 ----------VEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNE 144 (153)
Q Consensus 90 ----------~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~ 144 (153)
-+-+++++++|... |+.||..+-..+++++.+-|..
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~h-------------------GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWH-------------------GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHc-------------------CCCCchHHHHHHHHHhcccccc
Confidence 24466667777666 8999999999999999887764
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.012 Score=42.63 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=78.8
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH--HHhccCChH
Q 035927 14 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY--MYCKCGDVE 91 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~--~~~~~g~~~ 91 (153)
..|+..|++++|.+..+.. .+......=...+.+..+++-|.+.++.|++. -+..|.+.|..+. ...-.+...
T Consensus 116 ~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 4577889999999998884 33333333344456777888899999999874 4556777665552 012345688
Q ss_pred HHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhcCCch
Q 035927 92 KAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTHNGNE 144 (153)
Q Consensus 92 ~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~~g~~ 144 (153)
+|.-+|++|.++ +..+-|-+..++...+.++ .-.-+..|...++-.-...|..
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 899999999774 4444455555555556666 2223445555555444445544
No 111
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.79 E-value=0.0082 Score=44.82 Aligned_cols=137 Identities=14% Similarity=0.099 Sum_probs=96.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHH-HHHHHHHHhc
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV-RILTAYMYCK 86 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~li~~~~~~~ 86 (153)
+.+-+.|.+.|-+.+|...++.-. .|-..||-.|-+.|.+..+++.|+.++.+-+++ .|-.+||- ...+. +..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi--~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI--HEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH--HHH
Confidence 567788999999999999988765 457778999999999999999999999887764 45445554 44444 688
Q ss_pred cCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC------------CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 87 CGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.++.++|.++++...+- +++.-.++..+|.-.+.-+ |+ -+...|+.+--+|...+.+|.++-.|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998653 3443333333333332222 22 34566777777777777777665544
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.064 Score=45.71 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
...|+.+.++=.+.|.+.+|.+-|=+ ..|+..|-.+++...++|.+++-..++...++..-.|...+ .+|-+ |+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A--yA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA--YA 1177 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH--HH
Confidence 34699999999999999999988844 46888999999999999999999888876677666676654 56777 69
Q ss_pred ccCChHHHHHHHHhcc-----------------------cCChhhHHHHHHHHHhcCCCCC------CCCCHhHHHHHHH
Q 035927 86 KCGDVEKAQRVLRKML-----------------------RKDKFTWTAMIVGLAISDPFPT------IRPDEVTYVGVLS 136 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~-----------------------~~~~~~~~~li~~~~~~~~~~~------~~p~~~t~~~ll~ 136 (153)
+.+++.+.++.+..=. =.++.-|..+...++..|.++| -.-+..||..+.-
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 9999888877643210 0155667777777887777772 2234577888888
Q ss_pred HHhcCCchhHh
Q 035927 137 ACTHNGNETFV 147 (153)
Q Consensus 137 ~~~~~g~~~~a 147 (153)
+|...+.+..|
T Consensus 1258 aCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1258 ACVDKEEFRLA 1268 (1666)
T ss_pred HHhchhhhhHH
Confidence 87776666554
No 113
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.71 E-value=0.0075 Score=33.68 Aligned_cols=55 Identities=18% Similarity=0.240 Sum_probs=47.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
+...+.+.|++++|...|++..+ | +...+..+-..+.+.|++++|...|++.++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678899999999999999974 3 6778999999999999999999999999754
No 114
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.66 E-value=0.0089 Score=43.79 Aligned_cols=92 Identities=12% Similarity=0.199 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
.+|..+|+..-+.+.++.|..+|.+.++.+ ...++....+.+. |...++.+.|.++|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E---~~~~~d~~~A~~Ife~glk~------------- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME---YYCNKDPKRARKIFERGLKK------------- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH---HHTCS-HHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH-------------
Confidence 578999999999999999999999998654 3455555555554 35567788899999999764
Q ss_pred hcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 117 ISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 117 ~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..-+...|...+.-+.+.|+.+.|..+|+
T Consensus 66 -------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 66 -------FPSDPDFWLEYLDFLIKLNDINNARALFE 94 (280)
T ss_dssp -------HTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 23356667777788888888888887764
No 115
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.65 E-value=0.047 Score=40.83 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChh--HHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDEF--TIVRILTAY 82 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~--t~~~li~~~ 82 (153)
...+...+...|++++|...+++..+ | +...+..+-..+...|++++|...+++.....- .|+.. .|..+...
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~- 195 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF- 195 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH-
Confidence 34555678889999999999999863 3 566788888889999999999999998876432 23332 33345454
Q ss_pred HHhccCChHHHHHHHHhccc
Q 035927 83 MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~ 102 (153)
+...|+.++|.+++++...
T Consensus 196 -~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 196 -YLERGDYEAALAIYDTHIA 214 (355)
T ss_pred -HHHCCCHHHHHHHHHHHhc
Confidence 7999999999999999753
No 116
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.58 E-value=0.013 Score=33.06 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhcc
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG-DVEKAQRVLRKML 101 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g-~~~~a~~~~~~m~ 101 (153)
...|..+-..+.+.|++++|+..|++..+.+ |+....-..+..+ |.+.| ++++|++.|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~-~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLA-YMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHH-HHHhCccHHHHHHHHHHHH
Confidence 4556666666666677777777776666542 4333333333332 56666 5667766666554
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.56 E-value=0.063 Score=35.91 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=68.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
.+-..+...|++++|..+|+-... | +..-|-.|--.+=..|++++|.+.|......+ ||...----...| |.+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c-~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAEC-YLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHH-HHHc
Confidence 344567789999999999998863 3 55666677766767899999999999998765 4433333344444 8999
Q ss_pred CChHHHHHHHHhccc
Q 035927 88 GDVEKAQRVLRKMLR 102 (153)
Q Consensus 88 g~~~~a~~~~~~m~~ 102 (153)
|+.+.|.+-|+..+.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.56 E-value=0.056 Score=41.61 Aligned_cols=92 Identities=16% Similarity=0.101 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTA 81 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~ 81 (153)
......+...+...++-.+|.+++++..+ | +....+.-.+.|.+.++.+.|+.+.+++.+. .| +-.+|..|..+
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~ 277 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAEC 277 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence 33555688888888899999999988864 2 6666777777888999999999999999875 46 45588888888
Q ss_pred HHHhccCChHHHHHHHHhcc
Q 035927 82 YMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~ 101 (153)
|.+.|+++.|+..+..++
T Consensus 278 --Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 278 --YIQLGDFENALLALNSCP 295 (395)
T ss_pred --HHhcCCHHHHHHHHhcCc
Confidence 799999999999999985
No 119
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.04 Score=43.22 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
+|----..+.-.+++++|..=|++-.+ | +...|-.+-.+.-+.+.+++++..|++.+++ ++-....|+-.-.. +
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAei--L 472 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEI--L 472 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHH--H
Confidence 344444445555666777777766653 2 5667777777777888999999999888754 55567777777777 5
Q ss_pred hccCChHHHHHHHHhccc--CC-------hh--hHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCC
Q 035927 85 CKCGDVEKAQRVLRKMLR--KD-------KF--TWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNG 142 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~--~~-------~~--~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g 142 (153)
...++++.|.+.|+..++ |+ .- .=-+++-.-.+ ++|. .+-|-. ..|.+|-..-.+.|
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 889999999999988743 21 11 11111111111 2222 444543 55888888899999
Q ss_pred chhHhhhhcc
Q 035927 143 NETFVINSCN 152 (153)
Q Consensus 143 ~~~~a~~~~~ 152 (153)
++++|+++|+
T Consensus 552 ~i~eAielFE 561 (606)
T KOG0547|consen 552 KIDEAIELFE 561 (606)
T ss_pred hHHHHHHHHH
Confidence 9999999986
No 120
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.52 E-value=0.025 Score=42.89 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCC
Q 035927 45 DGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDP 120 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~ 120 (153)
..+...|++++|++.|++.++.. | +...|..+-.+ |.+.|++++|+..+++..+. +...|..+..+|...|.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~--~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQA--NIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 44557899999999999998753 4 44444444444 79999999999999999653 34445555555555554
Q ss_pred CC
Q 035927 121 FP 122 (153)
Q Consensus 121 ~~ 122 (153)
++
T Consensus 86 ~~ 87 (356)
T PLN03088 86 YQ 87 (356)
T ss_pred HH
Confidence 44
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.52 E-value=0.036 Score=48.28 Aligned_cols=143 Identities=12% Similarity=0.174 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.+|.++++.-..-|.-+...++|++..+- -...|-.|..-|.+.+..++|-++++.|.+. ++-....|...+.. +
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~f--L 1574 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADF--L 1574 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHH--H
Confidence 35666666666666556666666666542 2345666666666666666666666666543 22344455555555 4
Q ss_pred hccCChHHHHHHHHhcccC-------C-hhhHHHHHHHHHhcCC----CCCC---CC-CHhHHHHHHHHHhcCCchhHhh
Q 035927 85 CKCGDVEKAQRVLRKMLRK-------D-KFTWTAMIVGLAISDP----FPTI---RP-DEVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~-------~-~~~~~~li~~~~~~~~----~~~~---~p-~~~t~~~ll~~~~~~g~~~~a~ 148 (153)
.+..+.+.|..++.+..+. . +.-|..|.-.|+..+. |+|. -| -...|+..+..-.+.|+.+.+.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHH
Confidence 6666666666665554321 1 1122223323332211 2211 12 2355777777777777776666
Q ss_pred hhcc
Q 035927 149 NSCN 152 (153)
Q Consensus 149 ~~~~ 152 (153)
.+|+
T Consensus 1655 ~lfe 1658 (1710)
T KOG1070|consen 1655 DLFE 1658 (1710)
T ss_pred HHHH
Confidence 6653
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.48 E-value=0.17 Score=40.43 Aligned_cols=127 Identities=15% Similarity=0.230 Sum_probs=91.8
Q ss_pred CCchhHH--HHHHHHHHhcCChHHHHHHHHhCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHH
Q 035927 3 NKDVISW--TDIVSGYINRGQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77 (153)
Q Consensus 3 ~pd~~~~--~~li~~~~~~g~~~~a~~l~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 77 (153)
+|+...| .-+-..|-..|++++|++..++--+ |+ +..|..-.+.+-+.|++++|.+.++..++... -|...=+-
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK 267 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSK 267 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHH
Confidence 3555445 4556778889999999999997753 43 55788888888889999999999999988753 46566666
Q ss_pred HHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC-----Hh-HH--HHHHHHHhcCCchhHhhh
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD-----EV-TY--VGVLSACTHNGNETFVIN 149 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~-----~~-t~--~~ll~~~~~~g~~~~a~~ 149 (153)
.... +.|+|++++|.+++...-+++. .|- .. .| .-.-.+|.+.|++..|++
T Consensus 268 ~aKy--~LRa~~~e~A~~~~~~Ftr~~~-------------------~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 268 CAKY--LLRAGRIEEAEKTASLFTREDV-------------------DPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHH--HHHCCCHHHHHHHHHhhcCCCC-------------------CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 6666 6999999999999999876641 121 11 22 122366778888888776
Q ss_pred hc
Q 035927 150 SC 151 (153)
Q Consensus 150 ~~ 151 (153)
.|
T Consensus 327 ~~ 328 (517)
T PF12569_consen 327 RF 328 (517)
T ss_pred HH
Confidence 55
No 123
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.44 E-value=0.015 Score=32.73 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=53.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhh
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVN-RFREALTLFPEMQT 65 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 65 (153)
+..+|..+-..+.+.|++++|+..|.+..+ | +...|..+-.++.+.| ++++|+..++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456789999999999999999999999863 3 6778999999999999 79999999988765
No 124
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.37 E-value=0.038 Score=41.31 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=68.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
-||..-|-..+.++++.++|++-..+... +..+..|-..+..|.+.|+..+|..++.. .++..-+..
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~- 271 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVEM- 271 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHHH-
Confidence 48888999999999999999999988765 44668999999999999999999988876 223566676
Q ss_pred HHhccCChHHHHHHHHhc
Q 035927 83 MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m 100 (153)
|.++|++.+|.+.-.+.
T Consensus 272 -y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 272 -YLKCGDYKEAAQEAFKE 288 (319)
T ss_pred -HHHCCCHHHHHHHHHHc
Confidence 68899998887774444
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.34 E-value=0.12 Score=34.67 Aligned_cols=65 Identities=18% Similarity=0.146 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-C-hhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-D-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
...|..+...+...|++++|+..++......-.| + ..++..+-.. |.+.|+.++|++.+++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~--~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI--HTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHh
Confidence 4567788888888999999999999997653222 1 2345554444 79999999999999998653
No 126
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.061 Score=40.77 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=59.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhc-------CChHHHHHHHHHHhhCCCCCChhHHHHHHHHH--
Q 035927 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRV-------NRFREALTLFPEMQTSNIRPDEFTIVRILTAY-- 82 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~-------~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-- 82 (153)
|+-.|.+.+++++|..+..++...++.-|-.---.++.. .+++-|.+.|.-.-+++...|+..=..-+.+|
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF 370 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF 370 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence 455678889999999999888654443332111111222 23566666665444444443333222222222
Q ss_pred -------------------------------HHhccCChHHHHHHHHhcccC---ChhhHHHHHHHH
Q 035927 83 -------------------------------MYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGL 115 (153)
Q Consensus 83 -------------------------------~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~ 115 (153)
.++..|...+|+++|-.+..+ |-.+|..++..|
T Consensus 371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 371 LSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC 437 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence 456778888888888888665 556666555443
No 127
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.066 Score=39.73 Aligned_cols=141 Identities=18% Similarity=0.209 Sum_probs=91.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-------------CCh
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-------------PDE 72 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------p~~ 72 (153)
+..-....+.|+.+.|.+-|..-.+- ....||..+.-| +.++.+.|++...+.+++|++ ||+
T Consensus 148 in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 148 INLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred ccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 33334455677888887777766532 456777777655 667788888888888777653 333
Q ss_pred hHH--------HHHHHHH-----HHhccCChHHHHHHHHhcccC-----ChhhHHHHHHHHHhcCCCC---------CCC
Q 035927 73 FTI--------VRILTAY-----MYCKCGDVEKAQRVLRKMLRK-----DKFTWTAMIVGLAISDPFP---------TIR 125 (153)
Q Consensus 73 ~t~--------~~li~~~-----~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~---------~~~ 125 (153)
.+. ..++.++ .+.+.|+.+.|.+.+..|+-+ |++|-+.+.-.=+..+.-+ ++.
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcC
Confidence 221 2233332 456888889999998888643 6666665544333332222 455
Q ss_pred C-CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 126 P-DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 126 p-~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
| -..||..++--||++.-++.|-+++
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 5 3589999999999999888876653
No 128
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.089 Score=44.88 Aligned_cols=131 Identities=12% Similarity=0.167 Sum_probs=100.0
Q ss_pred HHHHhcCChHHHHHHHHhCCC-------------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 14 SGYINRGQVDIARQYFAQMPE-------------------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
..+...+.+++|..+|++... .....|+.+..+-.+.|...+|.+-|-+
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------
Confidence 344555667777777776642 1445788888888888888888776622
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC--ChhhHHHHHHHHHhcCCCC-----CCCCCHhHHHHHHHHHhcC
Q 035927 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISDPFP-----TIRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 69 ~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~-----~~~p~~~t~~~ll~~~~~~ 141 (153)
--|...|.-+|+.+ .+.|.|++..+.+...+++ ....-+.+|-+|++.+.+. -..||..-...+-.-|...
T Consensus 1130 adDps~y~eVi~~a--~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVA--SRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred cCCcHHHHHHHHHH--HhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhh
Confidence 24678899999996 9999999999988776553 4455678999999998777 3568888888899999999
Q ss_pred CchhHhhhhcc
Q 035927 142 GNETFVINSCN 152 (153)
Q Consensus 142 g~~~~a~~~~~ 152 (153)
|.++.|.-+|+
T Consensus 1208 ~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1208 KMYEAAKLLYS 1218 (1666)
T ss_pred hhhHHHHHHHH
Confidence 99998877664
No 129
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.014 Score=33.80 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
+|+.+-..|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444455555555444443
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.24 E-value=0.036 Score=45.72 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=61.4
Q ss_pred HHHhcCChHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHH
Q 035927 15 GYINRGQVDIARQYFAQMPERDYVL--WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK 92 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~ 92 (153)
+-.+...+.+|+.+++.++..++.+ |..+.+-|+..|+++.|+.+|-+- ..++-.|.. |.+.|+|..
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~m--y~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDM--YGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHH--HhccccHHH
Confidence 4445567777888887777544332 666667777778888887777432 345556666 688888888
Q ss_pred HHHHHHhcccC--ChhhHHHHHHHHHhcCCCC
Q 035927 93 AQRVLRKMLRK--DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 93 a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~ 122 (153)
|.++-.+...| ....|-+-..-+-..|.|.
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchh
Confidence 88877777655 4445554444444444444
No 131
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=0.14 Score=40.23 Aligned_cols=131 Identities=14% Similarity=0.226 Sum_probs=79.6
Q ss_pred cCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 19 RGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
.+++..|..+|++... ++...|---+..=-++..+..|.+++++.+.---+.|..=|. .+.. =...|++.+|.+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym--EE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM--EEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH--HHHhcccHHHHH
Confidence 3455667777776653 344555555555556666777777777666532222322222 2222 156677777777
Q ss_pred HHHhcc--cCChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 96 VLRKML--RKDKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 96 ~~~~m~--~~~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+|++-. +|+.-.|++.|.-=.+...++ -+.|+..+|--....=-+.|+...|..+|.
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 777654 467777777666555543333 466888888777777778888877777663
No 132
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.19 E-value=0.021 Score=32.52 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=33.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 45 DGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..+.+.+++++|++.++.+... .|+....-.....| |.+.|++++|.+.|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~-~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARC-LFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHH-HHHhccHHHHHHHHHHHHH
Confidence 3456667777777777777665 24433333333333 6777777777777777654
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.042 Score=41.63 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=42.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+..+.+..|++.+|+++|-......+ -|..+|-+++.-| |.++++++.|++++-++..|
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArC-yi~nkkP~lAW~~~lk~~t~ 457 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARC-YIRNKKPQLAWDMMLKTNTP 457 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHH-HHhcCCchHHHHHHHhcCCc
Confidence 34555666778888888866554444 3557777777776 88888888888888877665
No 134
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.16 E-value=0.2 Score=40.11 Aligned_cols=126 Identities=7% Similarity=-0.014 Sum_probs=73.5
Q ss_pred CCchhHHHHHHHHHHhcC-----ChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhc--------CChHHHHHHHHHHhhC
Q 035927 3 NKDVISWTDIVSGYINRG-----QVDIARQYFAQMPE--R-DYVLWTAMIDGYLRV--------NRFREALTLFPEMQTS 66 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~ 66 (153)
+.|...|...+.+..... ..++|..+|++..+ | ....|..+..++... +++..+.+........
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 466778888888765533 26789999998874 4 344555544433322 1223344444433332
Q ss_pred C-CCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchh
Q 035927 67 N-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNET 145 (153)
Q Consensus 67 ~-~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~ 145 (153)
. ...+...+.++--. ....|++++|...+++..+-+ |+...|..+-+.+...|+.+
T Consensus 414 ~~~~~~~~~~~ala~~--~~~~g~~~~A~~~l~rAl~L~---------------------ps~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 414 PELNVLPRIYEILAVQ--ALVKGKTDEAYQAINKAIDLE---------------------MSWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred ccCcCChHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcC---------------------CCHHHHHHHHHHHHHcCCHH
Confidence 1 33455666665433 356799999999999987642 44445555555555555555
Q ss_pred Hhhhhc
Q 035927 146 FVINSC 151 (153)
Q Consensus 146 ~a~~~~ 151 (153)
+|.+.|
T Consensus 471 eA~~~~ 476 (517)
T PRK10153 471 LAADAY 476 (517)
T ss_pred HHHHHH
Confidence 555443
No 135
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.08 E-value=0.077 Score=43.94 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g 88 (153)
|..+.+-|+..|+++.|.++|.+ ..-++..|..|.+.|++++|..+-.+.- |-......|-+-..- +-++|
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e-----~~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaed--ldehg 838 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTE-----ADLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAED--LDEHG 838 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHh-----cchhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHh--HHhhc
Confidence 77788899999999999999954 4567888999999999999998876654 222233444444444 46788
Q ss_pred ChHHHHHHHHhcccCC
Q 035927 89 DVEKAQRVLRKMLRKD 104 (153)
Q Consensus 89 ~~~~a~~~~~~m~~~~ 104 (153)
++.+|++++-.+..|+
T Consensus 839 kf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 839 KFAEAEQLYITIGEPD 854 (1636)
T ss_pred chhhhhheeEEccCch
Confidence 8888888877776664
No 136
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.97 E-value=0.14 Score=37.23 Aligned_cols=94 Identities=13% Similarity=0.111 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC-ChhHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRP-DEFTIVRI 78 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~t~~~l 78 (153)
..|...+..+.+.|++++|...|+.+.+ |+ ...+--+-..+...|++++|...|+.+.+.- -.| ....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4477877777888999999999999873 43 3567778888889999999999999998541 111 11222222
Q ss_pred HHHHHHhccCChHHHHHHHHhccc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
... |.+.|+.++|.++|+.+.+
T Consensus 224 g~~--~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVI--MQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHH--HHHcCCHHHHHHHHHHHHH
Confidence 222 6789999999999999875
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.94 E-value=0.18 Score=34.00 Aligned_cols=82 Identities=15% Similarity=0.145 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-C-hhHHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-D-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTA 110 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~ 110 (153)
....|..+...+.+.|++++|...|++..+.+-.+ + ...+..+... |.+.|++++|.+.+++..+. +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGII--YASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 45578888888889999999999999998654322 2 2345444444 79999999999999998653 3334444
Q ss_pred HHHHHHhcC
Q 035927 111 MIVGLAISD 119 (153)
Q Consensus 111 li~~~~~~~ 119 (153)
+...+...+
T Consensus 112 lg~~~~~~g 120 (172)
T PRK02603 112 IAVIYHKRG 120 (172)
T ss_pred HHHHHHHcC
Confidence 444444333
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.86 E-value=0.12 Score=37.61 Aligned_cols=94 Identities=12% Similarity=0.055 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh----hHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE----FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li 112 (153)
...|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+-.. |...|++++|...|+.+.+..+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~--y~~~g~~~~A~~~f~~vv~~yP------- 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQL--NYNKGKKDDAAYYFASVVKNYP------- 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHCC-------
Confidence 3457777777677899999999999998652 332 234444444 7899999999999999975310
Q ss_pred HHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 113 VGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 113 ~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-......+..+...+...|+.++|.+.|
T Consensus 212 ----------~s~~~~dAl~klg~~~~~~g~~~~A~~~~ 240 (263)
T PRK10803 212 ----------KSPKAADAMFKVGVIMQDKGDTAKAKAVY 240 (263)
T ss_pred ----------CCcchhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00112233444455555677777777665
No 139
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.86 E-value=0.079 Score=34.58 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=65.9
Q ss_pred chhHHHHHHH---HHHhcCChHHHHHHHHhCCC----C---------------------CHHHHHHHHHHHHhcCChHHH
Q 035927 5 DVISWTDIVS---GYINRGQVDIARQYFAQMPE----R---------------------DYVLWTAMIDGYLRVNRFREA 56 (153)
Q Consensus 5 d~~~~~~li~---~~~~~g~~~~a~~l~~~m~~----~---------------------~~~~~~~li~~~~~~~~~~~a 56 (153)
|...|-.++. .....|+.+.+...+.+... + =......++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 23456777777776666542 1 112455566666678999999
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 57 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..+.+.+.... +.|...|..+|.+ |.+.|+...|.++|+.+.+
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~--~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRA--LAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHH--HHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHH--HHHCcCHHHHHHHHHHHHH
Confidence 99999998764 4689999999999 6999999999999999954
No 140
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.31 Score=38.21 Aligned_cols=114 Identities=17% Similarity=0.230 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
....|+.+-+-|....+...|.+-+++-. ..|-..|-.|-.+|.--+...-|+-.|++... ++| |...|.+|-+
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~ 440 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGE 440 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHH
Confidence 44569999999999999999999998876 34888999999999999999999999988876 466 5666666555
Q ss_pred HHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
. |.+.+++++|++-|+....- +...+..+...|-+.++.+
T Consensus 441 C--Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 441 C--YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred H--HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 4 89999999999999998542 3466777777776665554
No 141
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.83 E-value=0.15 Score=44.80 Aligned_cols=146 Identities=13% Similarity=0.122 Sum_probs=109.8
Q ss_pred CCchh-HHHHHHHHHHhcCChHHHHHHHHhCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh
Q 035927 3 NKDVI-SWTDIVSGYINRGQVDIARQYFAQMPER--------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF 73 (153)
Q Consensus 3 ~pd~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 73 (153)
.|+.. .|-..|.-..+.+.++.|.+++++.... ....|.++++.-...|.-+....+|++..+-. -.-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 35544 4999999999999999999999998742 45689999988888898889999999998642 1234
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------CCCCCH---hHHHHHHHH
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------TIRPDE---VTYVGVLSA 137 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~~~p~~---~t~~~ll~~ 137 (153)
.|..|.+. |.+.++.++|.++++.|.++ ....|...+..+.+...-+ .+-|-. ....-...-
T Consensus 1532 V~~~L~~i--y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGI--YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHH--HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 56666666 79999999999999999765 6778999888888885533 444552 222333344
Q ss_pred HhcCCchhHhhhhcc
Q 035927 138 CTHNGNETFVINSCN 152 (153)
Q Consensus 138 ~~~~g~~~~a~~~~~ 152 (153)
-.+.|+.|++.-+|.
T Consensus 1610 EFk~GDaeRGRtlfE 1624 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFE 1624 (1710)
T ss_pred HhhcCCchhhHHHHH
Confidence 457888888777663
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.79 E-value=0.031 Score=32.34 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---------C-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE---------R-DYVLWTAMIDGYLRVNRFREALTLFP 61 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---------~-~~~~~~~li~~~~~~~~~~~a~~~~~ 61 (153)
.+|+.+-..|.+.|++++|+..|++..+ + ...+++.+-..+...|++++|++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4589999999999999999998876641 1 24456666666666777777776664
No 143
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.77 E-value=0.63 Score=35.62 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=107.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
.|..-..+--+.|+.+.+-..+.+..++ +...+-+..+.....|++..|..-+++..+.+- -.........++
T Consensus 120 ~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~-- 196 (400)
T COG3071 120 AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRA-- 196 (400)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHH--
Confidence 3555556667788899999988888754 556677777888889999999999999988753 355677888888
Q ss_pred HhccCChHHHHHHHHhcccCC-----------hhhHHHHHHHHHhcCCCCC-----------CCCCHhHHHHHHHHHhcC
Q 035927 84 YCKCGDVEKAQRVLRKMLRKD-----------KFTWTAMIVGLAISDPFPT-----------IRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~~-----------~~~~~~li~~~~~~~~~~~-----------~~p~~~t~~~ll~~~~~~ 141 (153)
|.+.|++.....+..++.+.+ ..+|+.++.=....+..+| .+-+...-.+++.-+.++
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 799999999999999997652 2367777777666655552 334556667778888899
Q ss_pred CchhHhhhhc
Q 035927 142 GNETFVINSC 151 (153)
Q Consensus 142 g~~~~a~~~~ 151 (153)
|+.++|.++.
T Consensus 277 ~~~~~A~~~i 286 (400)
T COG3071 277 GDHDEAQEII 286 (400)
T ss_pred CChHHHHHHH
Confidence 9999998764
No 144
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.38 Score=37.57 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=70.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHhhCC-C-------C
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERD-Y---VLWTAMIDGYLRVNRFREALTLFPEMQTSN-I-------R 69 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~-------~ 69 (153)
.+...|+.+-.+|.+.|++++|+..|++-. .|+ . .+|..+-.+|.+.|+.++|++.+++..+.+ . -
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~D 152 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILND 152 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHhC
Confidence 456679999999999999999999999864 454 2 469999999999999999999999988751 1 1
Q ss_pred CCh------hHHHHHHHHHHHhccCC-----hHHHHHHHHhcccC
Q 035927 70 PDE------FTIVRILTAYMYCKCGD-----VEKAQRVLRKMLRK 103 (153)
Q Consensus 70 p~~------~t~~~li~~~~~~~~g~-----~~~a~~~~~~m~~~ 103 (153)
||. ..|..++.. +.+-|. ...-.++..+...|
T Consensus 153 pdL~plR~~pef~eLlee--~rk~G~~~g~~~~~~~kL~~E~~aP 195 (453)
T PLN03098 153 PDLAPFRASPEFKELQEE--ARKGGEDIGSSFRRDLKLISEVQAP 195 (453)
T ss_pred cchhhhcccHHHHHHHHH--HHHhCCccCCchhhHHHHHHHHhch
Confidence 221 256666665 355553 33345555555555
No 145
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.66 E-value=0.35 Score=31.85 Aligned_cols=67 Identities=10% Similarity=0.209 Sum_probs=47.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhHHHHHHHH
Q 035927 14 SGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDEFTIVRILTA 81 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~ 81 (153)
....+.|+++.|.+.|+.+..+ ....-=.|+.++.+.+++++|...++++++..- -|+ +-|...+.|
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~g 91 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRG 91 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHH
Confidence 3455678899999999888742 455666788888899999999999998877542 233 444444444
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.66 E-value=0.39 Score=37.65 Aligned_cols=93 Identities=11% Similarity=0.025 Sum_probs=71.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--RD-YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
|+.-+....+.+.+.++.++|.+-++++.. |+ ...+-.+-.++.+.|++.+|..+++.-... .+-|...|.-|-++
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqa 417 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQA 417 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHH
Confidence 344456667789999999999999999974 44 556677788899999999999999888755 35688999999999
Q ss_pred HHHhccCChHHHHHHHHhc
Q 035927 82 YMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m 100 (153)
| ...|+..++..-..+.
T Consensus 418 y--~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 418 Y--AELGNRAEALLARAEG 434 (484)
T ss_pred H--HHhCchHHHHHHHHHH
Confidence 5 6666655555544443
No 147
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.56 E-value=0.23 Score=39.65 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhH----HHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT----IVRI 78 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t----~~~l 78 (153)
+..|..-...+-+.|++++|.+.++.-++ .|...=+-....+.++|++++|.+++..+-+.+..|-... +.+.
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 56688888999999999999999998875 3778889999999999999999999999987765443222 2333
Q ss_pred HHHH--HHhccCChHHHHHHHHhccc
Q 035927 79 LTAY--MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 79 i~~~--~~~~~g~~~~a~~~~~~m~~ 102 (153)
+..| .|.+.|++..|++-|..+.+
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3332 57899999999998888754
No 148
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=95.54 E-value=0.18 Score=33.26 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC---------CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE---------RDYVLWTAMIDGYLRVNR-FREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
.|.++.-....+++.....+++.+.. .+..+|++++.+.++... --.+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 68888888888888888888888852 267789999999987765 56778899999888899999999999
Q ss_pred HHHHHHhccCChHHH
Q 035927 79 LTAYMYCKCGDVEKA 93 (153)
Q Consensus 79 i~~~~~~~~g~~~~a 93 (153)
|.+ +.+|...+.
T Consensus 122 i~~---~l~g~~~~~ 133 (145)
T PF13762_consen 122 IKA---ALRGYFHDS 133 (145)
T ss_pred HHH---HHcCCCCcc
Confidence 999 555554443
No 149
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.098 Score=41.63 Aligned_cols=122 Identities=20% Similarity=0.239 Sum_probs=74.3
Q ss_pred HHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CC---CC-ChhHHHHHHHHHHHhc
Q 035927 16 YINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NI---RP-DEFTIVRILTAYMYCK 86 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~---~p-~~~t~~~li~~~~~~~ 86 (153)
|.+.++++.|.++|.+-.. | |+...+-+--...+.+.+.+|...|+.-+.. .+ ++ -..+++-+-.+ |-+
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~--~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA--YRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH--HHH
Confidence 4556667777777766652 2 6666666666556667777777777766521 11 11 22334444444 577
Q ss_pred cCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHh
Q 035927 87 CGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACT 139 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~ 139 (153)
.+..++|+..+++... .|..++.++.-.|...|.++ .++||-.+...+++.+.
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 7777888777777642 36666666666666666666 56677666666665443
No 150
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.49 E-value=0.043 Score=46.08 Aligned_cols=100 Identities=13% Similarity=0.131 Sum_probs=75.6
Q ss_pred CChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHH
Q 035927 20 GQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96 (153)
Q Consensus 20 g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~ 96 (153)
+..++|.++|.+... .|...=|.+-..++..|++.+|.++|.+.++... -+..+|--+-+. |..+|++..|.++
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~--~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHC--YVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHH--HHHHHHHHHHHHH
Confidence 456789999987763 3778888898999999999999999999987754 222344445555 6999999999999
Q ss_pred HHhcccC-----ChhhHHHHHHHHHhcCCCC
Q 035927 97 LRKMLRK-----DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 97 ~~~m~~~-----~~~~~~~li~~~~~~~~~~ 122 (153)
|+...+. +...-+.|..++.+.+.+.
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 9998543 5666666666666666555
No 151
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.46 E-value=0.061 Score=30.53 Aligned_cols=60 Identities=20% Similarity=0.294 Sum_probs=49.9
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhH
Q 035927 13 VSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 74 (153)
-..|.+.+++++|.++++++.. | +...|...-..+.+.|++++|...++...+.+ |+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~ 64 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPD 64 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHH
Confidence 3578899999999999999973 3 67778888889999999999999999998754 44433
No 152
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.42 E-value=0.19 Score=36.86 Aligned_cols=74 Identities=16% Similarity=0.239 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCChhHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT-----SNIRPDEFTIVRIL 79 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~li 79 (153)
++..++..+...|+++.+.+.++++-. | +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 456677777777777777777777753 2 667788888888888877777777777754 46777766666665
Q ss_pred HH
Q 035927 80 TA 81 (153)
Q Consensus 80 ~~ 81 (153)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
No 153
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.39 E-value=0.14 Score=42.79 Aligned_cols=120 Identities=13% Similarity=0.218 Sum_probs=70.0
Q ss_pred hcCChHHHHHHHHhCCCC-CHHHHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHH
Q 035927 18 NRGQVDIARQYFAQMPER-DYVLWTAMIDGYL--RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94 (153)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~ 94 (153)
..+++.+|....+++.+. .-..|...++++. +.|+.++|..+++....-+.. |..|...+-.. |-+.|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~--y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNV--YRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHH--HHHHhhhhHHH
Confidence 345666666666666421 2233455555554 567777777777666544332 66666666555 67778888888
Q ss_pred HHHHhcccC--ChhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhc
Q 035927 95 RVLRKMLRK--DKFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTH 140 (153)
Q Consensus 95 ~~~~~m~~~--~~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~ 140 (153)
.+|++..+. +...-..+..+|++.+.+. ..+-+...|+++++-..+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 888777653 3333334444555554443 333345667777766654
No 154
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.38 E-value=0.13 Score=42.04 Aligned_cols=54 Identities=22% Similarity=0.211 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPE 62 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 62 (153)
|..+|..|+..|+-++|..+..+-.+ ||..-|..+.+......-+++|+++.+.
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence 33444444444444444444443332 3444444444444333334444444443
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.36 E-value=0.68 Score=33.26 Aligned_cols=138 Identities=10% Similarity=0.017 Sum_probs=79.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCH-HH---HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHHHHH
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE--RDY-VL---WTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAYMY 84 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~--~~~-~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~ 84 (153)
....+.+.|++++|.+.|+++.. |+. .. .-.+..++.+.+++++|...++++.+.- -.|+. -+...+.+..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhh
Confidence 34455668999999999999974 322 22 2345567778999999999999998652 23332 33333333101
Q ss_pred hccC---------------C---hHHHHHHHHhccc--CChh------hHH------------HHHHHHHhcCCCC----
Q 035927 85 CKCG---------------D---VEKAQRVLRKMLR--KDKF------TWT------------AMIVGLAISDPFP---- 122 (153)
Q Consensus 85 ~~~g---------------~---~~~a~~~~~~m~~--~~~~------~~~------------~li~~~~~~~~~~---- 122 (153)
...+ + ..+|.+.|+.+++ |+.. ..- .+..-|.+.|.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 1111 2 2345566666643 2111 000 1111133333332
Q ss_pred ----------CCCCCHhHHHHHHHHHhcCCchhHhhhh
Q 035927 123 ----------TIRPDEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 123 ----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
+-+........+..+|.+.|..++|.+.
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4445567778889999999999988764
No 156
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.30 E-value=0.1 Score=41.54 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--hhHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD--EFTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~~~l 78 (153)
+|..+++.|-=.|--.|.+++|...|+... +| |...||-|-..++...+.++|.+-|.+.++- +|. .+=||.-
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlg 505 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLG 505 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhh
Confidence 667777777778888899999999999886 34 8899999999999999999999999999874 443 3456666
Q ss_pred HHHHHHhccCChHHHHHHHHhc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m 100 (153)
|. +...|.+++|.+.|-..
T Consensus 506 IS---~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 506 IS---CMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hh---hhhhhhHHHHHHHHHHH
Confidence 65 49999999998887665
No 157
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.25 E-value=0.69 Score=37.03 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCCCH--hHHHHHHHHHhcCCchhHhhhh
Q 035927 124 IRPDE--VTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 124 ~~p~~--~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
+.||. ..|..+|..=+..|++.-+.++
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 45554 7788888888888888777654
No 158
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.22 E-value=0.94 Score=34.08 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=27.6
Q ss_pred HHHhcCChHHHHHHHHhCCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 15 GYINRGQVDIARQYFAQMPE-R--DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
-|-..|-+|.|+.+|..+.. + -...-..|+.-|-+..++++|.+.-++..+.
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~ 170 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL 170 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 34455666666666666654 2 2234444555555555555555555555443
No 159
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.55 Score=39.86 Aligned_cols=94 Identities=14% Similarity=0.246 Sum_probs=65.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh--hHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERD------YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE--FTI 75 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~ 75 (153)
-|+...+.|-+.|.-.|+++.+..+.+.+-..+ ..+|-.+-++|...|++++|...|.+-.+. .||. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 355567778888888888888888888876432 345777888888888888888888666543 3333 223
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
-.+-+. |.+.|+++.+..-|+++.
T Consensus 346 ~GlgQm--~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 346 VGLGQM--YIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred cchhHH--HHHhchHHHHHHHHHHHH
Confidence 334444 677777777777777763
No 160
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.21 E-value=0.28 Score=40.31 Aligned_cols=134 Identities=14% Similarity=0.124 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g 88 (153)
--.+...+.+.|-...|..+|++. ..|...|..|+..|+-.+|..+..+-.++ +||...|..+-+. .-...
T Consensus 401 q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv--~~d~s 471 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV--LHDPS 471 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh--ccChH
Confidence 345667888899999999999876 56788888999999999999999888873 6888888888887 34444
Q ss_pred ChHHHHHHHHhcccC-------------------------------ChhhHHHHHHHHHhcCCCC----------CCCCC
Q 035927 89 DVEKAQRVLRKMLRK-------------------------------DKFTWTAMIVGLAISDPFP----------TIRPD 127 (153)
Q Consensus 89 ~~~~a~~~~~~m~~~-------------------------------~~~~~~~li~~~~~~~~~~----------~~~p~ 127 (153)
-+++|+++++....+ -..+|-.+-.+..+.+.++ ...||
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 567777777665221 1112222222222333333 56687
Q ss_pred H-hHHHHHHHHHhcCCchhHhhhhc
Q 035927 128 E-VTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 128 ~-~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
. ..||.+-.+|.+.|...+|...+
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHH
Confidence 6 55999999999988888887654
No 161
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=0.35 Score=32.11 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=51.5
Q ss_pred HHHHHHHHHH---hcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCC-hhhHHHHHH
Q 035927 39 LWTAMIDGYL---RVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD-KFTWTAMIV 113 (153)
Q Consensus 39 ~~~~li~~~~---~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~ 113 (153)
.-+.||+... ..++++++..+++.|+-. .-.|...+|...+. .+.|+|++|.++|+.+.+.. ...|..-+-
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~----i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLL----IARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHH----HHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 3344444443 368888999999888643 33466777777774 78999999999999997653 335555555
Q ss_pred HHHhc
Q 035927 114 GLAIS 118 (153)
Q Consensus 114 ~~~~~ 118 (153)
++|-.
T Consensus 85 A~CL~ 89 (153)
T TIGR02561 85 ALCLN 89 (153)
T ss_pred HHHHH
Confidence 55544
No 162
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.99 E-value=0.24 Score=36.59 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=69.5
Q ss_pred CCchhHHHHHHHHHHhc-----CChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCC----------------hHHHH
Q 035927 3 NKDVISWTDIVSGYINR-----GQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNR----------------FREAL 57 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~-----g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~----------------~~~a~ 57 (153)
+.|...|-+.+..+... +.++-.---+..|. ++|..+|+.||+.+-+... -+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 56777888888877665 33443333333443 5799999999999876532 24578
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh-HHHHHHHHhc
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV-EKAQRVLRKM 100 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~-~~a~~~~~~m 100 (153)
+++++|...|+.||..+=..+|++ +++.+-. .+..++.-.|
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~--FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNA--FGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHH--hccccccHHHHHHHHHhh
Confidence 899999999999999999999999 4777653 4455555555
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.97 E-value=0.55 Score=29.99 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=42.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChh--HHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 45 DGYLRVNRFREALTLFPEMQTSNIRPDEF--TIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.++-..|+.++|..+|++-...|...+.. .+-.+-.. |-..|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~last--lr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLAST--LRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 44556799999999999999988755422 22233333 7899999999999999865
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=94.91 E-value=0.22 Score=42.41 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.|+.|-..|+...+...|...|++--+ .+...+....+.|+...+++.|..+.-.--+ .-+--...+|++-.+-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q-ka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ-KAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh-hchHHHHHhhhhhccccc
Confidence 577788888887788888888888764 3677889999999999999999998332221 122234445555454347
Q ss_pred hccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC
Q 035927 85 CKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
.+.++.+++..-|+.-... |...|..+..+|.+.|...
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 7888999998888887543 6667777777777777666
No 165
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.91 E-value=0.99 Score=32.65 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDEFTIVRI 78 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~l 78 (153)
...|+.-+.. .+.|++++|.+.|+.+.+. ...+--.++.++-+.+++++|...++++.+. +-.|| .-|...
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Y 112 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYY 112 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHH
Confidence 3456665544 4689999999999999742 4556667777788899999999999999765 33444 345555
Q ss_pred HHH
Q 035927 79 LTA 81 (153)
Q Consensus 79 i~~ 81 (153)
|.+
T Consensus 113 lkg 115 (254)
T COG4105 113 LKG 115 (254)
T ss_pred HHH
Confidence 555
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.85 E-value=0.32 Score=41.36 Aligned_cols=52 Identities=8% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
+..+|-+.|+.++|..+|+++.+ .|..+-|-+-..++.. ++++|++++...+
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 33334444555555555555442 1444444444444444 5555555444443
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.81 E-value=0.67 Score=33.92 Aligned_cols=91 Identities=20% Similarity=0.337 Sum_probs=52.8
Q ss_pred HHHHHHHHhc-CChHHHHHHHHhCCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-----CCChhH
Q 035927 10 TDIVSGYINR-GQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-----RPDEFT 74 (153)
Q Consensus 10 ~~li~~~~~~-g~~~~a~~l~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~p~~~t 74 (153)
..+-..|-+. |++++|.+.|++-.. . -..++..+...+++.|++++|.++|++...... ++++..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344444444 555555555544431 1 123577778888888999999999998865432 222322
Q ss_pred --HHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 75 --IVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 75 --~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+.++| | +...|++-.|.+.|++..+.
T Consensus 198 ~~l~a~l--~-~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 198 YFLKAIL--C-HLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHH--H-HHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHH--H-HHHcCCHHHHHHHHHHHHhh
Confidence 22322 2 57788999999999987643
No 168
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.69 E-value=1.6 Score=35.80 Aligned_cols=108 Identities=7% Similarity=0.096 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC----------ChhhH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----------DKFTW 108 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~----------~~~~~ 108 (153)
.|...+...-..+-++.+..++++.++ .+...-+-.|.. +++.+++++|-+.+..+... +-..|
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~--L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw 213 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEY--LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLW 213 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHH--HHhccchHHHHHHHHHhcCchhhhhhcccchhhHH
Confidence 355666666666667777777777764 233336666776 59999999999999888532 34456
Q ss_pred HHHHHHHHhcCC----CC---------CCCCCH--hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 109 TAMIVGLAISDP----FP---------TIRPDE--VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 109 ~~li~~~~~~~~----~~---------~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+-+-.-.++.-. ++ +.-||. ..|.+|.+.|.++|.+|+|..+|.
T Consensus 214 ~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvye 272 (835)
T KOG2047|consen 214 LELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYE 272 (835)
T ss_pred HHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 655555555511 11 344675 679999999999999999998874
No 169
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.51 E-value=0.53 Score=33.07 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh----hHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 35 RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE----FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
.....+-.+...+.+.|++++|...+++..+.. |+. ..+..+-.. |.+.|++++|...++++.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~--~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYA--YYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHH
Confidence 466778888888999999999999999997653 322 244444444 79999999999999999653
No 170
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.44 E-value=1 Score=36.38 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=40.4
Q ss_pred HhccCChHHHHHHHHhcccCChhhHHHHH-----HHHHhc-C-CCC--CCCCCHhHHHHHHHH---HhcCCchhHhhhhc
Q 035927 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMI-----VGLAIS-D-PFP--TIRPDEVTYVGVLSA---CTHNGNETFVINSC 151 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li-----~~~~~~-~-~~~--~~~p~~~t~~~ll~~---~~~~g~~~~a~~~~ 151 (153)
+.|.|++++|.++|..+.+.+...+-.-+ .+-... . ..+ ...| ..||..+.+. +...|++.+|++++
T Consensus 120 lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 120 LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 47899999999999999766433333322 222222 1 122 2223 3356555543 34689999999875
Q ss_pred c
Q 035927 152 N 152 (153)
Q Consensus 152 ~ 152 (153)
.
T Consensus 199 ~ 199 (652)
T KOG2376|consen 199 E 199 (652)
T ss_pred H
Confidence 3
No 171
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.22 E-value=1 Score=30.75 Aligned_cols=96 Identities=8% Similarity=0.125 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC---CChhHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR---PDEFTIVR 77 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~t~~~ 77 (153)
..+..+.+.|++.|+.+.|.+.|.++... ....+=.+|+...-.+++..+...+.+....-.. ++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35778899999999999999999999854 2345677788888889999888888877654222 22222112
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+..+..+...+++.+|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 2222234678899999999888864
No 172
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.08 E-value=1.3 Score=36.28 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCh--hHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDE--FTI 75 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~--~t~ 75 (153)
-+.-|..+++.+++++|.+.+..... .+...|..+-+..+++.+.-..+++=..|+.. +.-+|. ..|
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw 251 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLW 251 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHH
Confidence 45667788888999998888888763 25667888888887775544444433233221 123554 457
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhcccC--ChhhHHHHHHHHHh
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK--DKFTWTAMIVGLAI 117 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~ 117 (153)
.+|.+. |.+.|++++|..+|++-.+. ++.-|..+..+|+.
T Consensus 252 ~SLAdY--YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 252 CSLADY--YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHH--HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 778887 79999999999999987654 44445555554443
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.00 E-value=1.4 Score=30.60 Aligned_cols=56 Identities=11% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC--C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
.....+.+.|++++|...|+++.. | -....-.+..++.+.|++++|...++++.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566778999999999999973 2 2345556778888999999999999998764
No 174
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=2.2 Score=33.38 Aligned_cols=140 Identities=10% Similarity=-0.044 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAM---IDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
.....+-+.+...|+.++|...|++.+.-|..+..+| --.+.+.|+.++...+...+.+.. +...=.+++.+|.
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQL 309 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhh
Confidence 3345555566666666666666666554333222211 111224445544444444443321 1111122222222
Q ss_pred HhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhHhhh
Q 035927 84 YCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
+....+++.|+.+-++.++. +...|-.--+.+...+..+ ...| +...|.-++.+|...|...+|+-
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 23334444444444444322 2222222222222223332 3444 45778888888888888777654
No 175
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=93.90 E-value=0.91 Score=38.73 Aligned_cols=124 Identities=10% Similarity=0.140 Sum_probs=75.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHH-HHHHHHHHHHhcCChHHHHHH------------------HH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYV-LWTAMIDGYLRVNRFREALTL------------------FP 61 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~-~~~~li~~~~~~~~~~~a~~~------------------~~ 61 (153)
+.+...+-.|+..+-..+++++|.++.+.-.. |+.. .|-.+-..+.+.++..++..+ ..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 35566789999999999999999999886542 3322 222222244455555554444 22
Q ss_pred HHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcC
Q 035927 62 EMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 62 ~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~ 141 (153)
.|...+ -+...+-.+..+ |-+.|+.+++..+|+++.+-|. -|....|.+-..|+..
T Consensus 108 ~i~~~~--~~k~Al~~LA~~--Ydk~g~~~ka~~~yer~L~~D~--------------------~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 108 KILLYG--ENKLALRTLAEA--YAKLNENKKLKGVWERLVKADR--------------------DNPEIVKKLATSYEEE 163 (906)
T ss_pred HHHhhh--hhhHHHHHHHHH--HHHcCChHHHHHHHHHHHhcCc--------------------ccHHHHHHHHHHHHHh
Confidence 222111 011233334443 6888999999999999987531 1455566666666666
Q ss_pred CchhHhhhhc
Q 035927 142 GNETFVINSC 151 (153)
Q Consensus 142 g~~~~a~~~~ 151 (153)
++++|.+++
T Consensus 164 -dL~KA~~m~ 172 (906)
T PRK14720 164 -DKEKAITYL 172 (906)
T ss_pred -hHHHHHHHH
Confidence 777776654
No 176
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.86 E-value=0.14 Score=25.04 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
|+.|-..|.+.|++++|.+++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555556666666555553
No 177
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=93.77 E-value=2.6 Score=35.67 Aligned_cols=133 Identities=12% Similarity=0.189 Sum_probs=84.6
Q ss_pred HHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCCh
Q 035927 15 GYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~ 90 (153)
...-.|++++|.+++.+.-+ .+...|-.|-..|=+.|+.+++...+- +.....| |..-|-.+-.. ..+.|.+
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladl--s~~~~~i 223 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADL--SEQLGNI 223 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHH--HHhcccH
Confidence 33444999999999988863 377889999999999999999887763 3333344 55666666665 5888889
Q ss_pred HHHHHHHHhcccCChhhHHH---HHHHHHhcCCCC----------CCCC------CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 91 EKAQRVLRKMLRKDKFTWTA---MIVGLAISDPFP----------TIRP------DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 91 ~~a~~~~~~m~~~~~~~~~~---li~~~~~~~~~~----------~~~p------~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.|.-.|.+.++.++.-|.. -+.-|-+.|... ...| ...+...+++.+-..+..+.|.+.+
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999987653332222 222233332222 2223 2234445556666666667766654
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.62 E-value=2.8 Score=34.96 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
..|......+.+.+..++|...+.+..+- -...|.-.-..+...|..++|.+.|.....- -|+.+--..-+..+
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~- 727 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAEL- 727 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHH-
Confidence 34566677777888888888777777643 3344555545556678888888888777653 46555544445554
Q ss_pred HhccCChHHHHH--HHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 84 YCKCGDVEKAQR--VLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 84 ~~~~g~~~~a~~--~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.+.|+..-|.+ ++..+.+-| +-+..-|-.+-..+-+.|+.++|-++|.
T Consensus 728 lle~G~~~la~~~~~L~dalr~d--------------------p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLD--------------------PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhC--------------------CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 788888777777 888887644 1256777777788888888888877763
No 179
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=0.91 Score=35.99 Aligned_cols=120 Identities=9% Similarity=0.166 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMY 84 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~ 84 (153)
|--+-..|....+.++....|.+-.. .|..+|..=-....-.+++++|..=|++.++- .| +...|-.+.-+ .
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a--~ 438 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCA--L 438 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHH--H
Confidence 55556666666666666666666542 24444444444444455666666666665543 23 23333333322 4
Q ss_pred hccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.|.++++++...|+..+++ .+--+..|+..-..+...+++++|.+-|+
T Consensus 439 Yr~~k~~~~m~~Fee~kkk--------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK--------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh--------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 5667777777777777653 11123445555566666666666655543
No 180
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.6 Score=37.39 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
...+++.|-++|-+.+++++|+..+++-. ..+..+++++--.+...|+++.|.+.|.+-+. ++||-.+...+++.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 45568888888888999999998888765 34788888888888888999999888887664 57887777777776
Q ss_pred H
Q 035927 82 Y 82 (153)
Q Consensus 82 ~ 82 (153)
+
T Consensus 532 a 532 (611)
T KOG1173|consen 532 A 532 (611)
T ss_pred H
Confidence 4
No 181
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.43 E-value=2.2 Score=31.06 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=78.8
Q ss_pred cCChHHHHHHHHhCCC--------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC
Q 035927 19 RGQVDIARQYFAQMPE--------RDY-VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~ 89 (153)
..+.++..+++.++.. ++. ..|-.++-+....|+.+.|..-++++...= |...=...+=... +...|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~-lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML-LEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH-HHHhhc
Confidence 3567777777777752 122 245556666667788888888888876542 4433333333332 566888
Q ss_pred hHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCC-C----------CCCCCHhHHHHHHHHHhcCCchhHhhhh
Q 035927 90 VEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPF-P----------TIRPDEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 90 ~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~-~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
+++|+++++.+.+. |..++---+...-..|.= + .+.-|...|.-+-.-|...|++++|.-+
T Consensus 102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 88888888888653 444444333332222111 1 4556778888888888888888877543
No 182
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.25 E-value=1.2 Score=34.98 Aligned_cols=63 Identities=17% Similarity=0.094 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh----HHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF----TIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+...|+.+-.+|.+.|++++|+..|++.++. .|+.. +|..+-.+ |.+.|+.++|++.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAca--ya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACC--HAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999998775 46643 34444444 8999999999999998765
No 183
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.15 E-value=1.1 Score=35.54 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=56.8
Q ss_pred HHHhcCChHHHHHHHHhCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 15 GYINRGQVDIARQYFAQMPER-------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
.+...|++++|.+.|++.... ....+--+.-.+.-..++++|.+.|..+.+.+ +-+..+|.=+..+| |...
T Consensus 276 ~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c-~~~l 353 (468)
T PF10300_consen 276 LERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC-LLML 353 (468)
T ss_pred HHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH-HHhh
Confidence 344468888888888864421 23344444445556678888888888887654 23556666666666 7888
Q ss_pred CCh-------HHHHHHHHhcc
Q 035927 88 GDV-------EKAQRVLRKML 101 (153)
Q Consensus 88 g~~-------~~a~~~~~~m~ 101 (153)
|+. ++|.++|.+++
T Consensus 354 ~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 354 GREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred ccchhhhhhHHHHHHHHHHHH
Confidence 887 78888888773
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.00 E-value=0.25 Score=36.38 Aligned_cols=69 Identities=13% Similarity=0.127 Sum_probs=51.6
Q ss_pred HhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhHhhh
Q 035927 84 YCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
+.+.+++++|...|.+.++ .|.+-|..-..+|.+.|.++ .+-|. ..+|..|-.+|...|++++|.+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3567788888888888754 36777888888888887777 33343 3668888888888998888887
Q ss_pred hcc
Q 035927 150 SCN 152 (153)
Q Consensus 150 ~~~ 152 (153)
-|+
T Consensus 171 ayk 173 (304)
T KOG0553|consen 171 AYK 173 (304)
T ss_pred HHH
Confidence 764
No 185
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=1.4 Score=36.55 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=60.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~ 89 (153)
+.-+.-+...|+-.+|.++-.+.+-||-..|---+.+++..+++++-+++-..++ +...|.-++.+| .+.|+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c--~~~~n 759 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC--LKQGN 759 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH--Hhccc
Confidence 4445566667788888888888888888888888888888887776444433332 146677778886 78888
Q ss_pred hHHHHHHHHhccc
Q 035927 90 VEKAQRVLRKMLR 102 (153)
Q Consensus 90 ~~~a~~~~~~m~~ 102 (153)
.++|.+.+-++..
T Consensus 760 ~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG 772 (829)
T ss_pred HHHHhhhhhccCC
Confidence 8888887776644
No 186
>PLN02789 farnesyltranstransferase
Probab=92.95 E-value=3 Score=31.30 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVN-RFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
++..+-..+.+.++.++|..+.++..+. +..+|+.--..+.+.| +++++++.++.+.+.+-+ +...|+---..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~-- 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL-- 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH--
Confidence 4455556677788899999999988743 4445555444555556 578999999988876532 22344433222
Q ss_pred HhccCC--hHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC
Q 035927 84 YCKCGD--VEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 84 ~~~~g~--~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
+.+.|+ .+++...++++.+. |..+|+...-.+...+.++
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH
Confidence 244554 36677888777543 6667777666666665555
No 187
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.87 E-value=2 Score=28.93 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=34.0
Q ss_pred hcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 49 RVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+.++.+++..+++.++-. .-.|...++...+ +.+.|+|.+|+.+|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l----~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL----HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH----HHHhCCHHHHHHHHHHHhcc
Confidence 456777888888777643 2234555555555 36788888888888887653
No 188
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.72 E-value=0.38 Score=23.45 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFA 30 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~ 30 (153)
|+.|-..|.+.|++++|+++|+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~ 23 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYE 23 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444455555555544443
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.71 E-value=2.3 Score=31.11 Aligned_cols=62 Identities=10% Similarity=0.223 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHhhC----CCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 39 LWTAMIDGYLRV-NRFREALTLFPEMQTS----NIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 39 ~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+..+-..|-+. |++++|.+.|++..+. |-+- -...+..+... +.+.|++++|.++|+++..
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l--~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL--YARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHH
Confidence 566667777777 8999999988887542 3111 12333444444 7999999999999999843
No 190
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.65 Score=34.84 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC-CCH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE-RDY-----VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+-..++..-....+++++...+=+++. |+. .+-..+++.+.+. ++++++.++..-.+-|+-||..+++.+|+
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 3445556666667889999999888874 321 2333445544443 57799999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
. +.+.++..+|..+...|..
T Consensus 144 ~--flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 144 S--FLKKENYKDAASVVTEVMM 163 (418)
T ss_pred H--HHhcccHHHHHHHHHHHHH
Confidence 9 5999999999999888754
No 191
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.35 E-value=2 Score=27.70 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
..-...++..+.+.+.++....+++.+... +...+|.++..+++.+ ..+.++.+.. ..+......+++.|
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 334578899999899999999999988643 6778999999999875 3444455442 13344455567765
Q ss_pred HHhccCChHHHHHHHHhcc
Q 035927 83 MYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~ 101 (153)
.+.+.++++.-++.++.
T Consensus 80 --~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 80 --EKAKLYEEAVELYKKDG 96 (140)
T ss_pred --HHcCcHHHHHHHHHhhc
Confidence 55666666666666653
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.35 E-value=3.5 Score=30.49 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=77.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCChhHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVN---RFREALTLFPEMQTSNIRPDEFTIVR 77 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ 77 (153)
-|...|--|-.+|.+.|+++.|..-|++-. .+|...+..+-..+.... .-.++.++|+++++. .|+.++-..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 467789999999999999999999998775 457777777777776543 457899999999875 366666666
Q ss_pred HHHHHHHhccCChHHHHHHHHhcccC
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
++..- +...|++.+|...|+.|.+.
T Consensus 232 lLA~~-afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFA-AFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHH-HHHcccHHHHHHHHHHHHhc
Confidence 66553 79999999999999999764
No 193
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.04 E-value=2.4 Score=28.55 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=54.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 11 DIVSGYINRGQVDIARQYFAQMP--ER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
.++..-.+.++.+++..+++-++ +| ...++-.++. ++.|++.+|+.+|++..+.. |.......|+..| +.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C-L~ 89 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA--PGFPYAKALLALC-LY 89 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH-HH
Confidence 34445566789999999999987 44 4455666655 78999999999999987653 5556666777776 55
Q ss_pred ccCCh
Q 035927 86 KCGDV 90 (153)
Q Consensus 86 ~~g~~ 90 (153)
..|+.
T Consensus 90 ~~~D~ 94 (160)
T PF09613_consen 90 ALGDP 94 (160)
T ss_pred HcCCh
Confidence 55553
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.03 E-value=3.3 Score=33.31 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+...|.++--.....|++++|...+++..+.+ |+...|..+-.. +...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~--~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKV--YELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHh
Confidence 55677777666667899999999999998875 788888888887 6999999999999998754
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.98 E-value=5 Score=31.48 Aligned_cols=137 Identities=14% Similarity=0.056 Sum_probs=82.4
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH-HHHHHHhccC
Q 035927 13 VSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI-LTAYMYCKCG 88 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l-i~~~~~~~~g 88 (153)
-.++.+.+++++|.--|+.-. .| +..+|..|+..|...|++++|.-+-+.-.+. ++-+..+.+.+ -..| +-...
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~-~~dp~ 418 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL-FPDPR 418 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee-ccCch
Confidence 345667788888877776654 33 7778888888888888888776654443221 12344444433 1222 23333
Q ss_pred ChHHHHHHHHhccc--CC-hhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 89 DVEKAQRVLRKMLR--KD-KFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 89 ~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
-=++|.+++++-.+ |+ +..-+.+..-+...|... ..-||....+.+-..+.....+.+|++.|
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34566666666532 32 333444444444444444 34588888888888888888888887765
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=1.8 Score=31.85 Aligned_cols=91 Identities=9% Similarity=0.149 Sum_probs=50.2
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH---HH
Q 035927 12 IVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---MY 84 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~---~~ 84 (153)
++..+--.|.+.-....+++..+. ++..-+.|.+.--+.|+.+.|...|++..+..-+.|..+++.++.-- .|
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 333344445555555555555432 44555555555556677777777777666555556666666655432 23
Q ss_pred hccCChHHHHHHHHhccc
Q 035927 85 CKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~ 102 (153)
.-..+...|...|++++.
T Consensus 263 lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILR 280 (366)
T ss_pred ecccchHHHHHHHhhccc
Confidence 344455555555555543
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.86 E-value=1.6 Score=28.62 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=45.4
Q ss_pred cCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 035927 19 RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~ 98 (153)
+|++......+..+- .+.......++.+.+.|+-++-.+++.++.+ +-.++....-.+-.+ |.+.|+..++.++++
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~A--y~klg~~r~~~ell~ 144 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANA--YKKLGNTREANELLK 144 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHH--HHHTT-HHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHH--HHHhcchhhHHHHHH
Confidence 456666666665552 2334456667777777777777777777654 335666666666666 577888777777777
Q ss_pred hcccC
Q 035927 99 KMLRK 103 (153)
Q Consensus 99 ~m~~~ 103 (153)
+.-++
T Consensus 145 ~ACek 149 (161)
T PF09205_consen 145 EACEK 149 (161)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66443
No 198
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.68 E-value=1.6 Score=37.54 Aligned_cols=95 Identities=22% Similarity=0.350 Sum_probs=54.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--------------------------------------C-CHHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--------------------------------------R-DYVLWTAMI 44 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--------------------------------------~-~~~~~~~li 44 (153)
.|...+..+.+.|++...++.|..+.-.-.+ | |...|..+.
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLG 603 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLG 603 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHH
Confidence 3455567777788888888887777333322 1 455566666
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 45 DGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
.+|...|.+..|+.+|.+... ++|+ .+|...-.+-+.+..|+..++...+..+.
T Consensus 604 eAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 666666666666666655543 2343 23333322223456666666666666553
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=91.64 E-value=2.5 Score=28.61 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 47 YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
+-..|++++|..+|..+..-+. -+.. |..=+.+| +-..+++++|...|...
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~-~n~~-Y~~GLaa~-~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF-YNPD-YTMGLAAV-CQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-CcHH-HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3355666666666666554332 1222 33333333 45556666666665554
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.63 E-value=2.8 Score=33.19 Aligned_cols=90 Identities=16% Similarity=0.229 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHH-HHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI-VRILTA 81 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~li~~ 81 (153)
+|+..|++--+..-++.|..+|.+.++ +++..++++|..++ .|+...|..+|+-=... -||...| +-.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 578888888888889999999988874 47788999998775 46677788888654432 2444443 444444
Q ss_pred HHHhccCChHHHHHHHHhccc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+.+.++-+.|..+|+.-++
T Consensus 476 --Li~inde~naraLFetsv~ 494 (660)
T COG5107 476 --LIRINDEENARALFETSVE 494 (660)
T ss_pred --HHHhCcHHHHHHHHHHhHH
Confidence 6888999999999986543
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.49 E-value=5.3 Score=33.39 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=54.7
Q ss_pred HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC------CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+...|+-..|.++-.+.+=||-..|..-+.+++..+.|+ +-+-.+.-|.-.+.+|.+.|+.++|.+.+.
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhh
Confidence 4566777777777777777788889999999999998888 223336778888999999999999887653
No 202
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.26 E-value=0.76 Score=22.54 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
.+++.|-..|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456666666666666666666666654
No 203
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.15 E-value=4.8 Score=29.88 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=67.0
Q ss_pred HHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChH
Q 035927 15 GYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~ 91 (153)
-+.+.+++++|+..|.+-.+ .|.+-|.-=-.+|++.|.++.|++=-+..++-+ .-...+|..|=.+ |...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A--~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLA--YLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHH--HHccCcHH
Confidence 34566788888888887753 377788888888889998888877665555422 1245566666666 68889999
Q ss_pred HHHHHHHhccc--CChhhHHHHHHH
Q 035927 92 KAQRVLRKMLR--KDKFTWTAMIVG 114 (153)
Q Consensus 92 ~a~~~~~~m~~--~~~~~~~~li~~ 114 (153)
+|++.|++..+ |+-.+|..=+..
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHH
Confidence 99999888854 544444443333
No 204
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.04 E-value=0.18 Score=32.78 Aligned_cols=120 Identities=17% Similarity=0.270 Sum_probs=70.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
..+++.+.+.+.++....+++.+. ..+....+.++..|++.++.++.+.+++. .+..-...+++.| .
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c--~ 81 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLC--E 81 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHH--H
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHH--H
Confidence 345677777788888777777776 23688899999999999887887777761 1113334555655 5
Q ss_pred ccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC------CCCCCHhHHHHHHHHHhcCCc
Q 035927 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP------TIRPDEVTYVGVLSACTHNGN 143 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~------~~~p~~~t~~~ll~~~~~~g~ 143 (153)
+.|-++++.-++.++...+... .-+...+.++ .-.++...|..+++.|...+.
T Consensus 82 ~~~l~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 82 KHGLYEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TTTSHHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred hcchHHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 6666666666666653321000 0000111111 223567778788777776654
No 205
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=91.00 E-value=1.2 Score=23.47 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=29.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 47 YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
..+.|-++++...+++|++.|+..+...++.+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34778888999999999999999999999888764
No 206
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.98 E-value=3.3 Score=35.14 Aligned_cols=106 Identities=15% Similarity=0.268 Sum_probs=79.4
Q ss_pred HHHHHHHHH--HhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 8 SWTDIVSGY--INRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 8 ~~~~li~~~--~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.|..++.++ .|.|+.++|..+++....+ |..|...+-..|-..++.++|..+|++.... -|+......+..+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma- 119 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA- 119 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH-
Confidence 466666665 5679999999999988743 8889999999999999999999999999875 4778888888887
Q ss_pred HHhccCChHH----HHHHHHhcccCChhhHHHHHHHHHhc
Q 035927 83 MYCKCGDVEK----AQRVLRKMLRKDKFTWTAMIVGLAIS 118 (153)
Q Consensus 83 ~~~~~g~~~~----a~~~~~~m~~~~~~~~~~li~~~~~~ 118 (153)
|.|.+++.+ |.++++...++ ...|.+.++-+...
T Consensus 120 -yvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 120 -YVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQS 157 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHh
Confidence 688888765 55566654443 44444444444443
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.46 E-value=7.6 Score=30.82 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC----------CHHHHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCChhHH
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPER----------DYVLWTAMIDGYLRV----NRFREALTLFPEMQTSNIRPDEFTI 75 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~----------~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~ 75 (153)
..++...+=.|+-+.+++++.+-.+. -...|+..+..++.. .+.+.|.++++.+++. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555556666666666554321 223466666555543 3567777777777654 4665555
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
...-.= .+...|++++|++.|+...
T Consensus 270 l~~~gR-~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGR-LERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHH-HHHHhcCHHHHHHHHHHhc
Confidence 544444 3667777777777777654
No 208
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.38 E-value=0.76 Score=23.38 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
|..+-..+.+.|++++|.+.+++.++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444555555555554444
No 209
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.36 E-value=0.11 Score=33.70 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=60.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCC
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPF 121 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~ 121 (153)
.+|..+.+.+.++....+++.....+-.-+....+.++.. |++.++.++..++++.-.. .-...++..|-+.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~l--y~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~-- 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLEL--YIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHG-- 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHH--HHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTT--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHH--HHhcCCchHHHHHcccccc---cCHHHHHHHHHhcc--
Confidence 3566777788889999999999977766677888888887 6999888888888773322 22222333333222
Q ss_pred CCCCCCHhHHHHHHHHHhcCCchhHhhhh
Q 035927 122 PTIRPDEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 122 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
.|...+-.|.+.|+.++|.++
T Consensus 85 --------l~~~a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 85 --------LYEEAVYLYSKLGNHDEALEI 105 (143)
T ss_dssp --------SHHHHHHHHHCCTTHTTCSST
T ss_pred --------hHHHHHHHHHHcccHHHHHHH
Confidence 333445566677777776654
No 210
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.34 E-value=1.7 Score=31.95 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.++..+++.+...|+.+.+...++++.... +-|...|..++.+ |.+.|+...|++.|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~--y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEA--YLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHH--HHHcCCchHHHHHHHHHHH
Confidence 467778888888899999999999998764 4689999999999 6999999999999999954
No 211
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.18 E-value=2.7 Score=35.77 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC-------------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-------------R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~-------------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
+..+|..+...|.+..+++-|.-.+.+|.. + +...=.+. ..+..|.+++|+.+|++-++
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAv--LAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAV--LAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHH--HHHHHhhHHHHHHHHHHHHH
Confidence 456899999999999999999999999974 1 11111222 22456778888887776654
No 212
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=90.06 E-value=10 Score=31.63 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
..+|-.-+..-+....++.|..+|.+-. .++...|---+..---.++.++|+.++++.++. -|+-+-+-.+++-.
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi- 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQI- 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHH-
Confidence 3445555555566666666666666655 245445544444444455566666666555543 34433333333332
Q ss_pred HhccCChHHHHHHHHhccc--CC-hhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhcCCchhHhhh
Q 035927 84 YCKCGDVEKAQRVLRKMLR--KD-KFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~--~~-~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
+.+.++++.|.+.|..=.+ |+ ++.|-.+..-=-+.+.+- .-+-|...|...|+.=.+.|+.+.|..
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 4556666666665555433 22 333332222111111111 222355678888888888888887765
Q ss_pred h
Q 035927 150 S 150 (153)
Q Consensus 150 ~ 150 (153)
+
T Consensus 775 l 775 (913)
T KOG0495|consen 775 L 775 (913)
T ss_pred H
Confidence 4
No 213
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.96 E-value=6.6 Score=29.55 Aligned_cols=142 Identities=16% Similarity=0.142 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
-+++.+..+.+..++++|++++..-.++ +....+.|-..|-...++..|-+-++++... -|...-|...-.- .+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ-SL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ-SL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH-HH
Confidence 4778888889999999999998877643 6677888888888888999999999888653 4666666554333 25
Q ss_pred hccCChHHHHHHHHhcccC-ChhhHHHHHHHHH--hcCCCCC------CCCCHhHHHHHH-HHH--hcCCchhHhhhhcc
Q 035927 85 CKCGDVEKAQRVLRKMLRK-DKFTWTAMIVGLA--ISDPFPT------IRPDEVTYVGVL-SAC--THNGNETFVINSCN 152 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~--~~~~~~~------~~p~~~t~~~ll-~~~--~~~g~~~~a~~~~~ 152 (153)
.+.+.+.+|+++...|... +...-..-+.+-. ..+++.| -.|...+-..++ .+| .+.|+.|.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7889999999999998763 3222222222211 2244442 234322222222 223 36777777776653
No 214
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.67 E-value=0.83 Score=22.40 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQM 32 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m 32 (153)
..+++.|-..|...|++++|..++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 357899999999999999999999765
No 215
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=3.6 Score=32.09 Aligned_cols=105 Identities=12% Similarity=0.009 Sum_probs=69.1
Q ss_pred HHhcCChHHHHHHHHhCCCC-CHHHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH----------
Q 035927 16 YINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLR--VNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---------- 82 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~---------- 82 (153)
+.-.|+.++|...-....+- ....+...+++.+- .++.+.|...|++-++.+ ||...-.+.-..+
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhh
Confidence 33456667766666555543 44566777776664 578888888888887654 6666555554443
Q ss_pred -HHhccCChHHHHHHHHhcccC-------ChhhHHHHHHHHHhcCCCC
Q 035927 83 -MYCKCGDVEKAQRVLRKMLRK-------DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 83 -~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~~~~~ 122 (153)
...+.|...+|.+.+..-+.. +...|.....+..+.|...
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~ 304 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR 304 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch
Confidence 567999999999999998643 4445555555555555554
No 216
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.33 E-value=2.1 Score=26.63 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+...-++.+-...+.|+.....+.+++| -|-+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAc--RRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRAC--RRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHH--HHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHH--HHhhhHHHHHHHHHHHHHH
Confidence 4445555666677889999999999998 8999999999999998653
No 217
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=88.99 E-value=1.2 Score=32.94 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
+..=|+..|+..++.|++++|+.++++.++.|+.--..+|-.-++
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 445588999999999999999999999999998766666655443
No 218
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.95 E-value=6.8 Score=28.60 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC----CCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSN----IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.|+.-++.+ +.|++.+|.+-|...++.. +.|+. +=+|-.. +...|+.++|..+|..+.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~--~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGES--LYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHH--HHhcccchHHHHHHHHHHH
Confidence 366555544 5555666666666665541 22332 2234444 4666666666666666644
No 219
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.91 E-value=1.3 Score=22.49 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
..+-.. |.+.|++++|+++|++..+.
T Consensus 5 ~~la~~--~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARA--YRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHH--HHHcCCHHHHHHHHHHHHHH
Confidence 344455 68999999999999998753
No 220
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=0.82 Score=34.30 Aligned_cols=82 Identities=16% Similarity=0.299 Sum_probs=47.9
Q ss_pred CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc-C--------ChhhHHHHHHHHHhc-------CCCC-CCCCCHh
Q 035927 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-K--------DKFTWTAMIVGLAIS-------DPFP-TIRPDEV 129 (153)
Q Consensus 67 ~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~-~--------~~~~~~~li~~~~~~-------~~~~-~~~p~~~ 129 (153)
|...++.+....+.. -....++++++..+-+++. + +.++|--++.-|-.. ..++ |+.||..
T Consensus 59 g~~~s~~~Vd~~V~v--~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDV--ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhc--cccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHccChHHHHHHHhCcchhccccchh
Confidence 334444555555544 1335555555555555532 1 233333333222221 2233 8999999
Q ss_pred HHHHHHHHHhcCCchhHhhhh
Q 035927 130 TYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 130 t~~~ll~~~~~~g~~~~a~~~ 150 (153)
|++.+|..+.+.|+..+|.++
T Consensus 137 ~~c~l~D~flk~~n~~~aa~v 157 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASV 157 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHH
Confidence 999999999999999888765
No 221
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.72 E-value=1.8 Score=34.79 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHh-hCC--CCCC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP--ER----------DYVLWTAMIDGYLRVNRFREALTLFPEMQ-TSN--IRPD 71 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~--~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~~--~~p~ 71 (153)
...-+|.-.|.+.|.-.+|...++... .| +...=+. +.+.....+.+...+|.++. ..+ +-||
T Consensus 354 eaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 354 EALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 334445555666666666666666552 11 0000000 23333344556666666664 445 3444
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHH
Q 035927 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSA 137 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~ 137 (153)
+.+.-.+| |--.|+++.|.+-|+...+ | |...||-+-..++....-+ .+.|+- +....|--+
T Consensus 432 vQ~~LGVL----y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS 507 (579)
T KOG1125|consen 432 VQSGLGVL----YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS 507 (579)
T ss_pred HHhhhHHH----HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence 44443333 5778999999999999854 4 7888988887777775555 667874 445566777
Q ss_pred HhcCCchhHhhhhc
Q 035927 138 CTHNGNETFVINSC 151 (153)
Q Consensus 138 ~~~~g~~~~a~~~~ 151 (153)
|...|.+++|.+.|
T Consensus 508 ~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHL 521 (579)
T ss_pred hhhhhhHHHHHHHH
Confidence 88899998887654
No 222
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.64 E-value=2.7 Score=25.90 Aligned_cols=57 Identities=19% Similarity=0.208 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHH
Q 035927 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIV 113 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~ 113 (153)
++..-++.+......|+.....+.+++| -|-+++..|.++|+.++.+ +...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAc--RRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRAC--RRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 4455555666677889999999999998 8999999999999988643 2334554443
No 223
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=87.85 E-value=15 Score=30.72 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE-FTIVRILTAY 82 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~li~~~ 82 (153)
.||+.--..|.+.+.++=|..+|....+ .+...|......=-..|..+.-..+|++.+.. .|-+ ..|--....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake- 593 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKE- 593 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHH-
Confidence 3466666666666777777777766653 24555555555444456666666666666544 2322 222222222
Q ss_pred HHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHHHHHhcCCchhHhhh
Q 035927 83 MYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
+-..|+...|..++....+. +...|-+-+.--.....++ +..|+...|.--++.---.|+.|+|.+
T Consensus 594 -~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 594 -KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred -HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 34556666666666655332 3333433333333332222 344555444444444444455555444
Q ss_pred h
Q 035927 150 S 150 (153)
Q Consensus 150 ~ 150 (153)
+
T Consensus 673 l 673 (913)
T KOG0495|consen 673 L 673 (913)
T ss_pred H
Confidence 4
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.70 E-value=4.4 Score=32.12 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=50.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.|...|-+||..+...|..++..+.+++|..| =...|..-|++=....+++..+.+|.+-+.... +...|...+.
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl~ 117 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYLE 117 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHHH
Confidence 45556777777777777777777777777766 334566666666666677777777777765533 3555666655
Q ss_pred H
Q 035927 81 A 81 (153)
Q Consensus 81 ~ 81 (153)
.
T Consensus 118 Y 118 (660)
T COG5107 118 Y 118 (660)
T ss_pred H
Confidence 3
No 225
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.65 E-value=8 Score=32.94 Aligned_cols=91 Identities=12% Similarity=0.061 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCC--C-Ch
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFPEMQT----SNIR--P-DE 72 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~ 72 (153)
.+.+-..+...|++++|...+++... + -..+...+-..+...|++++|...+++... .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 34455556677888887777766642 1 122344455556677888888877776643 2211 1 11
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
..+..+-.. +...|++++|...+.+..
T Consensus 574 ~~~~~la~~--~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 574 FLLRIRAQL--LWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHH--HHHhcCHHHHHHHHHHhH
Confidence 222222222 455688888877777663
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.63 E-value=6.2 Score=28.83 Aligned_cols=92 Identities=12% Similarity=0.219 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC--hhHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPD--EFTIVRI 78 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~--~~t~~~l 78 (153)
.|+.-++.+ +.|++..|..-|....+ | ....+-=|-..+...|++++|-.+|..+.+. +-.|- ...|..-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 588777655 56779999999988864 2 3445556889999999999999999999764 22221 2223222
Q ss_pred HHHHHHhccCChHHHHHHHHhcccC
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
. . ..+.|+-++|..+|+++.+.
T Consensus 223 ~-~--~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 V-S--LGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred H-H--HHHhcCHHHHHHHHHHHHHH
Confidence 2 2 58999999999999999774
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=87.18 E-value=7.2 Score=26.40 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=61.4
Q ss_pred HHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhHHHHHHHHHHHhccCC
Q 035927 14 SGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~~~g~ 89 (153)
..+-..|++++|..+|.-+.. + |..-|-.|-..+-..+++++|.+.|...-..+. -|-. .|. ..-| |...|+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-~f~--agqC-~l~l~~ 120 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-VFF--TGQC-QLLMRK 120 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-cch--HHHH-HHHhCC
Confidence 345678999999999988763 3 555566666666667999999999988765432 1222 222 2334 789999
Q ss_pred hHHHHHHHHhcccC
Q 035927 90 VEKAQRVLRKMLRK 103 (153)
Q Consensus 90 ~~~a~~~~~~m~~~ 103 (153)
.+.|..-|....+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988664
No 228
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.02 E-value=7 Score=26.06 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=48.9
Q ss_pred HHHHhcCChHHHHHHHHhCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC
Q 035927 14 SGYINRGQVDIARQYFAQMP--ER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~--~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g 88 (153)
..-...++++++..+++.|+ .| ...+|-.++. ++.|++++|+.+|++..+.+. ...--..|+-.| +.-.|
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~C-L~al~ 92 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSAG--APPYGKALLALC-LNAKG 92 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHH-HHhcC
Confidence 33345789999999999887 44 4556776665 789999999999999987752 223344455444 44444
Q ss_pred C
Q 035927 89 D 89 (153)
Q Consensus 89 ~ 89 (153)
+
T Consensus 93 D 93 (153)
T TIGR02561 93 D 93 (153)
T ss_pred C
Confidence 4
No 229
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.90 E-value=10 Score=27.78 Aligned_cols=111 Identities=14% Similarity=0.223 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHH-HHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDG-YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
|-.++-+....|+.+.|...++++.. |+..=...|=.. +-..|++++|.++++..++.+ +.|.+++.-=+-. .-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAi--lk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAI--LK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHH--HH
Confidence 55666677777888888888888753 211111111111 124688999999999998876 5577777665555 35
Q ss_pred ccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC
Q 035927 86 KCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~ 122 (153)
..|+--+|++-+....+ .|...|.-+..-|...+.|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 56766677776666654 38889999999888888887
No 230
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.83 E-value=5.6 Score=24.76 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=43.0
Q ss_pred hHHHHHHHHhCCC-CCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 035927 22 VDIARQYFAQMPE-RDYVLWTAMID--GYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 22 ~~~a~~l~~~m~~-~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~ 98 (153)
-++|.-+-+.+.. ++..-...||+ .+.+.|++++|+.+.+.. ..||...|-++.. .|.|..+++..-+.
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce----~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE----WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH----HhhccHHHHHHHHH
Confidence 3455555554442 22233333433 344567777777766555 3677777777665 46777776666666
Q ss_pred hcccCC
Q 035927 99 KMLRKD 104 (153)
Q Consensus 99 ~m~~~~ 104 (153)
.|.+++
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 665543
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.70 E-value=6.4 Score=25.27 Aligned_cols=81 Identities=10% Similarity=0.140 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
+...-..++..+.+.+..+....+++.+...+ ..+....+.+|.. |++.. .++..+.++. .++.......+.-|
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~l--y~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c 79 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIEL--YAKYD-PQKEIERLDN--KSNHYDIEKVGKLC 79 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHH--HHHHC-HHHHHHHHHh--ccccCCHHHHHHHH
Confidence 33445678888888899999999999998877 3677788899988 57664 4444455552 33344444466666
Q ss_pred HhcCCCC
Q 035927 116 AISDPFP 122 (153)
Q Consensus 116 ~~~~~~~ 122 (153)
-+.+.++
T Consensus 80 ~~~~l~~ 86 (140)
T smart00299 80 EKAKLYE 86 (140)
T ss_pred HHcCcHH
Confidence 5555554
No 232
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=86.65 E-value=4.4 Score=33.90 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=53.5
Q ss_pred CChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 035927 20 GQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 20 g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~ 98 (153)
|++++|.+++-+|.++|.. |...-+.|++-.+.++++.=-.. .-..-...|+.+-.. ++...+|++|.+.+.
T Consensus 748 g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYS 820 (1189)
T ss_pred cchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 4555556666555554432 33334444444444443211000 001112334444444 355555555555555
Q ss_pred hcccCChhhHHHHHHHHHhcCCCC-------CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 99 KMLRKDKFTWTAMIVGLAISDPFP-------TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 99 ~m~~~~~~~~~~li~~~~~~~~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
..... ...+.++.+.++|+ .++-|+...-.+...+.+.|.-++|.+.|
T Consensus 821 ~~~~~-----e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 821 YCGDT-----ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred hccch-----HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 44321 11333444444444 23334455555666666666666665543
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=13 Score=28.84 Aligned_cols=86 Identities=14% Similarity=0.244 Sum_probs=63.4
Q ss_pred HHHHhcCChHHHHHHHHhCCC------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHH
Q 035927 14 SGYINRGQVDIARQYFAQMPE------------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTI 75 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 75 (153)
+.+.+.|++..|..-|++... .-..++..+.-.+.+.+++..|+..-+.-+..+ ++|+...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 478899999999988887431 134567778888889999999998888877654 2344433
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
=-==++ +...|+++.|+..|.++.+
T Consensus 295 yRrG~A--~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQA--LLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHH--HHhhccHHHHHHHHHHHHH
Confidence 333445 5888999999999999954
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=86.36 E-value=9.3 Score=26.81 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=60.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---CCCChhHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN---IRPDEFTIV 76 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~t~~ 76 (153)
|++..--.|-.+..+.|+..+|...|++-.. .|+...-.+-++....+++..|...+++.-+.+ -.||.. -
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--L 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--H
Confidence 4444445566677777777777777776653 266666667777777777777777777765443 234322 2
Q ss_pred HHHHHHHHhccCChHHHHHHHHhccc
Q 035927 77 RILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 77 ~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+-+. |...|+..+|+.-|+...+
T Consensus 165 l~aR~--laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFART--LAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHH--HHhcCCchhHHHHHHHHHH
Confidence 33333 4667777777777777654
No 235
>PLN02789 farnesyltranstransferase
Probab=86.26 E-value=12 Score=28.11 Aligned_cols=108 Identities=9% Similarity=0.104 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcC-ChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 8 SWTDIVSGYINRG-QVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNR--FREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 8 ~~~~li~~~~~~g-~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.|+..-..+.+.| ++++++.+++++.+ | +..+|+----.+-+.|. .++++++++.+.+.+- -+...|+---..
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~ 151 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWV 151 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4666666666667 57888888887753 2 55556644333444444 3667788877776542 355666666655
Q ss_pred HHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAIS 118 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~ 118 (153)
+.+.|+++++++.++++++. |...|+.....+.+.
T Consensus 152 --l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 152 --LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred --HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 47778888888888888652 667777766665544
No 236
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=12 Score=30.16 Aligned_cols=114 Identities=14% Similarity=0.222 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHH-------HHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMID-------GYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~-------~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
++..-.+|...|...++...-+.-.+. ...-|+.+-. ++.+.++++.|...|.+-+..-.+||..+=..-
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~ 339 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKE 339 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHH
Confidence 445555566666655555544442211 1122333333 333445667777777666554444443322221
Q ss_pred HHHH-----------------------HHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC
Q 035927 79 LTAY-----------------------MYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 79 i~~~-----------------------~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
..-- .+.+.|++..|.+-++++++. |...|.....+|.+.+.+.
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~ 409 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP 409 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH
Confidence 1111 567999999999999998653 7888998888888887777
No 237
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=86.17 E-value=7.8 Score=31.89 Aligned_cols=95 Identities=18% Similarity=0.263 Sum_probs=55.4
Q ss_pred CCchhHHHH--HHHHHHhcCChHHHHHHHHhCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHH
Q 035927 3 NKDVISWTD--IVSGYINRGQVDIARQYFAQMPERDYV---LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77 (153)
Q Consensus 3 ~pd~~~~~~--li~~~~~~g~~~~a~~l~~~m~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 77 (153)
+|....|+. +...+-+.|+++.|....+.--.-+++ -|-.--+-+...|++++|..++++.++.+. ||...=.-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsK 444 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSK 444 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHH
Confidence 566655554 455666777788887777766542222 233334566667777777777777776542 44333324
Q ss_pred HHHHHHHhccCChHHHHHHHHhc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m 100 (153)
..+. ..+..+.++|.++....
T Consensus 445 cAKY--mLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 445 CAKY--MLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHH--HHHccccHHHHHHHHHh
Confidence 4444 35566666666665555
No 238
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=85.82 E-value=12 Score=30.31 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
-..+|...|+.--+...++.|..+|.+.++.+..+ .+...++++.. -..++..-|.++|+-=.+
T Consensus 365 ~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy---~cskD~~~AfrIFeLGLk 429 (656)
T KOG1914|consen 365 LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY---YCSKDKETAFRIFELGLK 429 (656)
T ss_pred CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH---HhcCChhHHHHHHHHHHH
Confidence 34578888888888888888899998888888777 77777778774 567788888888876543
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.03 E-value=13 Score=27.71 Aligned_cols=53 Identities=21% Similarity=0.267 Sum_probs=25.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 47 YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 47 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
....|++.+|..+|+......-. +...--.+..+ |...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~--~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAEC--LLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHH--HHHcCChHHHHHHHHhCcc
Confidence 34556666666666555443211 11222233333 4666666666666666643
No 240
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.02 E-value=20 Score=29.41 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH--------hCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCChhHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFA--------QMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NIRPDEFTI 75 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~--------~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~ 75 (153)
+-=.++......|+++.|.+++. .+.+ .-+.+...+...+.+.++-+.|-++++....+ .-.+.....
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l 457 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIAL 457 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHH
Confidence 34456677788899999999998 3331 24556677777778887777777777777543 112333333
Q ss_pred HHHHHHH--HHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhc
Q 035927 76 VRILTAY--MYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAIS 118 (153)
Q Consensus 76 ~~li~~~--~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~ 118 (153)
.+++.-. .-.+.|..++|..+++++.+- |+.+-..++.+|++-
T Consensus 458 ~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 458 LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 3333321 145779999999999999762 455555555555544
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.85 E-value=1.2 Score=21.37 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=19.8
Q ss_pred CHhHHHHHHHHHhcCCchhHhhh
Q 035927 127 DEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 127 ~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
|...|+.+-..+...|+.++|++
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhcC
Confidence 56789999999999999999874
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.64 E-value=16 Score=28.15 Aligned_cols=90 Identities=16% Similarity=0.137 Sum_probs=63.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC-------CHHHHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPER-------DYVLWTAMIDGYLR---VNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.++-+|-...+++...++.+.++.. +...=-...-++.+ .|+-++|++++.........++..||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999999854 11111122233335 7999999999999877777788889888877
Q ss_pred HH--HHhc-----cCChHHHHHHHHhc
Q 035927 81 AY--MYCK-----CGDVEKAQRVLRKM 100 (153)
Q Consensus 81 ~~--~~~~-----~g~~~~a~~~~~~m 100 (153)
.+ .+.. ...+++|+..|.+-
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 75 2222 23477788888776
No 243
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=83.45 E-value=14 Score=26.50 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC----ChhhHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----DKFTWTAM 111 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~l 111 (153)
+...+-.....+.+.|++++|...|+.+...--.+.......+.-+..|.+.++.++|...+++..+. .-..|...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 44433344455567899999999999998753222211111122222379999999999999999652 34456666
Q ss_pred HHHHHh
Q 035927 112 IVGLAI 117 (153)
Q Consensus 112 i~~~~~ 117 (153)
+.|.+.
T Consensus 111 ~~g~~~ 116 (243)
T PRK10866 111 MRGLTN 116 (243)
T ss_pred HHHHhh
Confidence 666653
No 244
>PF13934 ELYS: Nuclear pore complex assembly
Probab=83.40 E-value=14 Score=26.32 Aligned_cols=103 Identities=12% Similarity=0.097 Sum_probs=57.8
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 8 SWTDIVSGYIN--RGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 8 ~~~~li~~~~~--~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
.|...+.++-- .+++++|.+.+-+-.-+ ...-.-++..+...|+.+.|+.+++...-..- +......++.. .
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~---L 151 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA---L 151 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH---H
Confidence 34555665554 35677777776433211 11122477777778888888887766542211 22222333333 5
Q ss_pred ccCChHHHHHHHHhcccCC-hhhHHHHHHHHH
Q 035927 86 KCGDVEKAQRVLRKMLRKD-KFTWTAMIVGLA 116 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~ 116 (153)
.++.+.+|...-+...++. ...+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 6788888888877776642 445555555555
No 245
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.28 E-value=2.9 Score=31.13 Aligned_cols=76 Identities=14% Similarity=0.389 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhc--CChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc-------CChHHHHHHHHhcccC---
Q 035927 36 DYVLWTAMIDGYLRV--NRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC-------GDVEKAQRVLRKMLRK--- 103 (153)
Q Consensus 36 ~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~-------g~~~~a~~~~~~m~~~--- 103 (153)
...++.+++..-... ..+++.+++++.|.+.|++-+..+|-+..-. ... .....|..+|+.|++.
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i---~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALII---LEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHH---HHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 455666666543331 2357778899999999999888777664443 233 3467799999999763
Q ss_pred ----ChhhHHHHHHH
Q 035927 104 ----DKFTWTAMIVG 114 (153)
Q Consensus 104 ----~~~~~~~li~~ 114 (153)
+-.++.+++..
T Consensus 136 LTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 136 LTSPEDYPFAALLAM 150 (297)
T ss_pred ccCccchhHHHHHhc
Confidence 44555555554
No 246
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.26 E-value=15 Score=26.51 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCH-HHHHHHHHHHH--hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDY-VLWTAMIDGYL--RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
..+||-+--.+...|+++.|.+.|+..-+-|+ .-|..+=++.. -.|+++-|.+=+...=+.+-+-.-.+....+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 34577777777777888888888877765322 23333333322 24666666655544433321111111111121
Q ss_pred HHhccCChHHHH-HHHHhcccCChhhHHHHHHHHHhcCCCC---------CCC-------CCHhHHHHHHHHHhcCCchh
Q 035927 83 MYCKCGDVEKAQ-RVLRKMLRKDKFTWTAMIVGLAISDPFP---------TIR-------PDEVTYVGVLSACTHNGNET 145 (153)
Q Consensus 83 ~~~~~g~~~~a~-~~~~~m~~~~~~~~~~li~~~~~~~~~~---------~~~-------p~~~t~~~ll~~~~~~g~~~ 145 (153)
.+.-++.+|. ++.++..+.|..-|..-|-.|.--..-+ +-. --..||..+-+-+...|+++
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~ 254 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLD 254 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHH
Confidence 2233444443 2333334445555655555543321111 111 12478889999999999999
Q ss_pred HhhhhccC
Q 035927 146 FVINSCNL 153 (153)
Q Consensus 146 ~a~~~~~~ 153 (153)
+|..+|+|
T Consensus 255 ~A~~LfKL 262 (297)
T COG4785 255 EATALFKL 262 (297)
T ss_pred HHHHHHHH
Confidence 99988864
No 247
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=83.25 E-value=13 Score=26.05 Aligned_cols=66 Identities=12% Similarity=0.198 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 35 RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
|+...--.|-.++...|+..+|...|++-..--+--|....-.+-++ ....+++..|...++++-+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A--qfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA--QFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH--HHhhccHHHHHHHHHHHhh
Confidence 56677778889999999999999999999877677899888899998 6899999999999999854
No 248
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=83.21 E-value=9.7 Score=24.41 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 035927 55 EALTLFPEMQTSNIRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
++.++|..|.+.|+.-. +..|...-.. +.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~--le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEF--LEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHH--HHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHH--HHHcCCHHHHHHHHHh
Confidence 89999999999988554 4555555555 6999999999999874
No 249
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.72 E-value=3.5 Score=21.29 Aligned_cols=25 Identities=16% Similarity=0.347 Sum_probs=16.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSN 67 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~ 67 (153)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556667777777777777766543
No 250
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.61 E-value=3.2 Score=18.44 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=10.5
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFA 30 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~ 30 (153)
.+-.++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 251
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.52 E-value=1.8 Score=28.24 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=25.6
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 50 VNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.|.-.+|..+|..|++.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4666789999999999999997 58888876
No 252
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.46 E-value=13 Score=26.67 Aligned_cols=74 Identities=20% Similarity=0.224 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHH-HHHHHHHhccCChHHHHHHHHhccc------CChhhHHHHH
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR-ILTAYMYCKCGDVEKAQRVLRKMLR------KDKFTWTAMI 112 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-li~~~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~li 112 (153)
.+.-++.+.+.+.+.+|+...++=++. +|.-.+... +++. ||-.|+|++|..-++-.-+ +....|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqL--lcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQL--LCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHH--HhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 344566667777777777776665554 454333333 3443 6777777777665555421 2455676666
Q ss_pred HHHHh
Q 035927 113 VGLAI 117 (153)
Q Consensus 113 ~~~~~ 117 (153)
.+-..
T Consensus 80 r~ea~ 84 (273)
T COG4455 80 RCEAA 84 (273)
T ss_pred HHHHH
Confidence 65433
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.37 E-value=23 Score=28.06 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
..-.+.++..+-+.|-.+.|+++-.. . ..=.+...+.|+++.|.++.++. .+...|..|-... .
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A--L 358 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA--L 358 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH--H
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH--H
Confidence 33478888888888888888877632 2 12233444566666665554322 2445666666653 6
Q ss_pred ccCChHHHHHHHHhccc
Q 035927 86 KCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~ 102 (153)
+.|+++-|++-|.+...
T Consensus 359 ~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD 375 (443)
T ss_dssp HTTBHHHHHHHHHHCT-
T ss_pred HcCCHHHHHHHHHhhcC
Confidence 66666666666666543
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.15 E-value=21 Score=27.47 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=86.3
Q ss_pred cCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CC-CCChhHHHHHHHHHHHhccCChHHH
Q 035927 19 RGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NI-RPDEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~-~p~~~t~~~li~~~~~~~~g~~~~a 93 (153)
.|+..+|...|+++.+ .|...++-.=+++.-.|+.+.....+++.... +- .|...-.+.+..-+ +..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg-L~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG-LEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh-HHHhccchhH
Confidence 4666667777777763 37778888888888899999888988888643 31 23334444444443 7899999999
Q ss_pred HHHHHhcccCC---hhhHHHHHHHHHhcCCCC---------------CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 94 QRVLRKMLRKD---KFTWTAMIVGLAISDPFP---------------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 94 ~~~~~~m~~~~---~~~~~~li~~~~~~~~~~---------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
++.-++-.+-| .=.-++....+-..+.+. +-.--.+.|+...-.+...+.++.|.++|+
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99998887643 333334444444444433 111123445566666667789999998885
No 255
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=81.74 E-value=29 Score=28.82 Aligned_cols=45 Identities=11% Similarity=0.199 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTA 81 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~ 81 (153)
...|-....+..-.|+...|..++++..+.. -.|+...+.-....
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~ 188 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELL 188 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 3457777777777899999999999998664 46777777665544
No 256
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=80.97 E-value=7.5 Score=21.63 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=30.4
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH---HHhccCChHHHHHHH
Q 035927 48 LRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---MYCKCGDVEKAQRVL 97 (153)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~---~~~~~g~~~~a~~~~ 97 (153)
.+.|++=+|.+++++.=...-.|....+..+|+.+ ...+.|+.+.|.+++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35677777888887774322233566666666654 344777777777664
No 257
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.92 E-value=18 Score=27.14 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=22.3
Q ss_pred HHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035927 14 SGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
..|..+|.+.+|.++-++...- +...|-.+|..++..|+--.|..-++.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444445555555544444321 3444444555555444444444433333
No 258
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.62 E-value=21 Score=26.54 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=73.8
Q ss_pred CChHHHHHHHHhCCC-----CCHHHHHHHHHHHHhc--CChHHHHHHHHHHhh-CCCCCChhHHHHHHHHHHHhccCChH
Q 035927 20 GQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRV--NRFREALTLFPEMQT-SNIRPDEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 20 g~~~~a~~l~~~m~~-----~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~~~g~~~ 91 (153)
..+.+|..+|+.... .|...-.-+++..... ..+..-.++.+.+.+ .|-.++..+...+|.. +++.++|.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~--L~~~~dW~ 219 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEI--LAESRDWN 219 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHH--HHhcccHH
Confidence 346788888884432 3777788888888762 245555566666653 3556888899999999 69999999
Q ss_pred HHHHHHHhcccC-----ChhhHHHHHHHHHhcCCCC
Q 035927 92 KAQRVLRKMLRK-----DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 92 ~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~ 122 (153)
+-.++|+..... |...|...|......|+-+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 999999998543 7777888777777775544
No 259
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.52 E-value=11 Score=27.11 Aligned_cols=74 Identities=9% Similarity=-0.004 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCChhHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NIRPDEFTIVRILTA 81 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~ 81 (153)
|.+..++.+.+.+++++++.....=. +| |..+=..++..+|-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45667788889999999888776543 34 6777788999999999999999888776443 466778888888886
No 260
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.26 E-value=4.6 Score=18.76 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
+|..+-..+...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344555555555555555555555543
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=79.50 E-value=15 Score=24.23 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=63.8
Q ss_pred HHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhHHHHHH-HHHHHhccCC
Q 035927 15 GYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDEFTIVRIL-TAYMYCKCGD 89 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li-~~~~~~~~g~ 89 (153)
+.+..|+++.|++.|.+-. ....+.||.=..++--.|+.++|++=+++.++. |-+ ....+.+.+ ++..|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 5677899999999998875 247889999999998899999999999988764 433 222222222 2223677888
Q ss_pred hHHHHHHHHhccc
Q 035927 90 VEKAQRVLRKMLR 102 (153)
Q Consensus 90 ~~~a~~~~~~m~~ 102 (153)
-+.|..=|+...+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 8888888877643
No 262
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.45 E-value=13 Score=23.25 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=33.1
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHH
Q 035927 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 76 (153)
+..+.+.|++++|..+.+.+.-||...|-+|-. .+.|-.+++..=+.+|.++| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344555666666666666666666666666555 34454454445555555554 24444443
No 263
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.22 E-value=12 Score=25.63 Aligned_cols=53 Identities=21% Similarity=0.088 Sum_probs=41.0
Q ss_pred HhcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 48 LRVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
....+.+...+..+..++. ...|+..+|..++.+ +...|+.++|.++..++..
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~--l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALA--LALLGDPEEARQWLARARR 172 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 3556666666666665543 468999999999998 6999999999999888753
No 264
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.97 E-value=27 Score=27.86 Aligned_cols=80 Identities=11% Similarity=0.288 Sum_probs=46.6
Q ss_pred HHHHHHHHHHH--hcCChHHHHHHHHHHhhC--CCCC-----------ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 38 VLWTAMIDGYL--RVNRFREALTLFPEMQTS--NIRP-----------DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 38 ~~~~~li~~~~--~~~~~~~a~~~~~~m~~~--~~~p-----------~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..|-.+..++. +.+++++|.+.+..-.+. +.+| +...+.-+.--| +...|++.++..++++|..
T Consensus 78 s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~s-LIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 78 SAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHS-LIETGRFSEGRAILNRIIE 156 (549)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHH-HHhcCCcchHHHHHHHHHH
Confidence 34555555544 456777777777766544 3222 122222222222 6888888888888888753
Q ss_pred C--------ChhhHHHHHHHHHhc
Q 035927 103 K--------DKFTWTAMIVGLAIS 118 (153)
Q Consensus 103 ~--------~~~~~~~li~~~~~~ 118 (153)
. ++.+|+-+.--+.+.
T Consensus 157 ~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 157 RLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHhhhhhcccHHHHHHHHHHHhHH
Confidence 2 677777755555554
No 265
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.63 E-value=5.3 Score=18.48 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
|..+-..+.+.|++++|...|++..
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555555543
No 266
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=78.62 E-value=4.5 Score=22.45 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=30.2
Q ss_pred ChHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 21 QVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 21 ~~~~a~~l~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
.++...++.+.++. -|-.-.=.+|.++.+.|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555542 2555566788999999999999998888754
No 267
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.59 E-value=24 Score=28.69 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=93.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
|....-++++.++...+.+-...+-.+|. ..+-..|-.++..|..+ ..++-..+|+++++..+ -|++--..+...
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~- 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADK- 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHH-
Confidence 34456678888888888888888888886 45777888999999888 56777888888887765 344444555554
Q ss_pred HHhccCChHHHHHHHHhcccC---------ChhhHHHHHHHHHhc--------CCCC---CCCCCHhHHHHHHHHHhcCC
Q 035927 83 MYCKCGDVEKAQRVLRKMLRK---------DKFTWTAMIVGLAIS--------DPFP---TIRPDEVTYVGVLSACTHNG 142 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~--------~~~~---~~~p~~~t~~~ll~~~~~~g 142 (153)
|.+ ++.+.+...|.+...+ =...|.-++.-...- ..++ |..--.+.+..+-.-|....
T Consensus 142 -yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 142 -YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred -HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 344 7888888887776432 122455554421111 1111 33344556666777888888
Q ss_pred chhHhhhhc
Q 035927 143 NETFVINSC 151 (153)
Q Consensus 143 ~~~~a~~~~ 151 (153)
++++|+++.
T Consensus 220 N~~eai~Il 228 (711)
T COG1747 220 NWTEAIRIL 228 (711)
T ss_pred CHHHHHHHH
Confidence 888888765
No 268
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=78.46 E-value=19 Score=24.86 Aligned_cols=103 Identities=18% Similarity=0.275 Sum_probs=57.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC-CCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C--ChhhHHHHHHHHHh
Q 035927 44 IDGYLRVNRFREALTLFPEMQTS-NIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K--DKFTWTAMIVGLAI 117 (153)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~--~~~~~~~li~~~~~ 117 (153)
-..+.+.|++.+|...|+.+... .-.| -....-.+..+ +.+.|+++.|...++...+ | ....+...+.|.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a--~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYA--YYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHH--HHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34455889999999999999864 2222 22233344444 6899999999999999864 2 23344445555444
Q ss_pred cCCCCCC---CCC-------HhHHHHHHHHHhcCCchhHhh
Q 035927 118 SDPFPTI---RPD-------EVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 118 ~~~~~~~---~p~-------~~t~~~ll~~~~~~g~~~~a~ 148 (153)
.....+. ..| ..+|..++.-|=.+...++|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~ 130 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK 130 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH
Confidence 3322211 122 134555555555555555443
No 269
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=78.43 E-value=40 Score=28.54 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~ 80 (153)
|..+|..+--+..+.|+++.+.+.|++...- ....|+.+-..+...|.-..|..+++.-....-.|+ ...+-..-+
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 5567888888889999999999999887632 456788888888889988889998877665443354 344444444
Q ss_pred HHHHhccCChHHHHHHHHhcc
Q 035927 81 AYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~ 101 (153)
.| +.+-+..+++++.-.+..
T Consensus 402 lc-~e~l~~~eegldYA~kai 421 (799)
T KOG4162|consen 402 LC-IERLKLVEEGLDYAQKAI 421 (799)
T ss_pred HH-HhchhhhhhHHHHHHHHH
Confidence 44 666777777766665554
No 270
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=77.97 E-value=11 Score=21.81 Aligned_cols=77 Identities=8% Similarity=0.073 Sum_probs=46.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh---hHHHHHHHHHHHhccCCh
Q 035927 14 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE---FTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~~~~~~~g~~ 90 (153)
...++.|+++-...+++.-...+. -+..+...+..|+. ++++.+.+.|..++. ...+.+..+ +..|+.
T Consensus 2 ~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A---~~~~~~ 72 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINSQDKNGNTALHYA---AENGNL 72 (89)
T ss_dssp HHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-BSTTSSBHHHHH---HHTTHH
T ss_pred HHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccccCCCCCCHHHHH---HHcCCH
Confidence 456778888888888884433333 22244445566764 455556667666654 356666666 677777
Q ss_pred HHHHHHHHh
Q 035927 91 EKAQRVLRK 99 (153)
Q Consensus 91 ~~a~~~~~~ 99 (153)
+-+.-+.+.
T Consensus 73 ~~~~~Ll~~ 81 (89)
T PF12796_consen 73 EIVKLLLEH 81 (89)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 766555544
No 271
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.60 E-value=44 Score=28.47 Aligned_cols=135 Identities=10% Similarity=0.101 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
.+..+|+.+.-.|++++|..+.-+|.+.+..-|--.+.-++..++.. +++.-+....-+.+...|..++..| ..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~---~Ia~~lPt~~~rL~p~vYemvLve~--L~- 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT---DIAPYLPTGPPRLKPLVYEMVLVEF--LA- 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc---hhhccCCCCCcccCchHHHHHHHHH--HH-
Confidence 34555555555555555555555555555555555555555555544 2333333332234455566666553 22
Q ss_pred CChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 88 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.+... .++.+.+=....|+.+--.-+....+....-+...-..|..-|...|++++|.+++
T Consensus 468 ~~~~~---F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~y 528 (846)
T KOG2066|consen 468 SDVKG---FLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIY 528 (846)
T ss_pred HHHHH---HHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHH
Confidence 11111 11111111112222211111111111111122233344888888899999988765
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=77.54 E-value=14 Score=25.17 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP--DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
...+..+.+.|++.|+.++|...+.++++....| -...+-.+|+.+ .-.|+++.+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~--i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVA--IFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999998875444 334455566664 778899888888877743
No 273
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.49 E-value=7.9 Score=33.20 Aligned_cols=138 Identities=16% Similarity=0.150 Sum_probs=89.0
Q ss_pred chhHHHHHHH--HHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CC--------CCChh
Q 035927 5 DVISWTDIVS--GYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NI--------RPDEF 73 (153)
Q Consensus 5 d~~~~~~li~--~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~--------~p~~~ 73 (153)
|..|-.++++ .|...|+++.|.+-.+-++ .-..|..|.+.|++..+++-|.--+-.|... |. .|+..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 3344444443 3556788888877666553 4578999999999999888887777777432 21 24333
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC---CC-----C-CCHhHHHHHHHHHhcCCch
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP---TI-----R-PDEVTYVGVLSACTHNGNE 144 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~---~~-----~-p~~~t~~~ll~~~~~~g~~ 144 (153)
.-...+-+ ...|-+++|+.++++.+.-|. |=.-|...|.++ .+ . --..||-.....+-..|+.
T Consensus 803 eakvAvLA---ieLgMlEeA~~lYr~ckR~DL-----lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 803 EAKVAVLA---IELGMLEEALILYRQCKRYDL-----LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred hhHHHHHH---HHHhhHHHHHHHHHHHHHHHH-----HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccH
Confidence 33333333 778999999999999877542 223344445555 00 0 1135666666777778899
Q ss_pred hHhhhhcc
Q 035927 145 TFVINSCN 152 (153)
Q Consensus 145 ~~a~~~~~ 152 (153)
+.|++.|+
T Consensus 875 ~~AleyyE 882 (1416)
T KOG3617|consen 875 EAALEYYE 882 (1416)
T ss_pred HHHHHHHH
Confidence 99998875
No 274
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=75.88 E-value=35 Score=26.54 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
.+++.|...+.+.+++..|++.-.+... +|.-..--=-.++...|+++.|+..|+.+++. .|+-...+.=|..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l- 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL- 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH-
Confidence 3577788889999999999998887763 45555445556777889999999999999874 57666666655554
Q ss_pred HhccCCh-HHHHHHHHhcc
Q 035927 84 YCKCGDV-EKAQRVLRKML 101 (153)
Q Consensus 84 ~~~~g~~-~~a~~~~~~m~ 101 (153)
--+..+. +...++|..|-
T Consensus 335 ~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444443 44577888884
No 275
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=75.87 E-value=39 Score=27.03 Aligned_cols=121 Identities=11% Similarity=0.071 Sum_probs=76.7
Q ss_pred HHhcCChHHHHHHHHhCCCC---C------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHh
Q 035927 16 YINRGQVDIARQYFAQMPER---D------YVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~ 85 (153)
+-+.+++++|..+|.++-.. + ...-+-+|++|... +++.....+...++. |-.|=...|..++ ..
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~----~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALV----AY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHH----HH
Confidence 34678999999999999632 2 33455677777554 466666666666543 4334444444444 46
Q ss_pred ccCChHHHHHHHHhcccC------------------ChhhHHHHHHHHHhcCCCC----------------CCCCCHhHH
Q 035927 86 KCGDVEKAQRVLRKMLRK------------------DKFTWTAMIVGLAISDPFP----------------TIRPDEVTY 131 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~~------------------~~~~~~~li~~~~~~~~~~----------------~~~p~~~t~ 131 (153)
+.++.++|.+.+..-.+. |...-+..+.++-..|.|. ....+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 899999999988776432 2223344556666667776 344678888
Q ss_pred HHHHHHHhcC
Q 035927 132 VGVLSACTHN 141 (153)
Q Consensus 132 ~~ll~~~~~~ 141 (153)
+.++--++++
T Consensus 171 d~~vlmlsrS 180 (549)
T PF07079_consen 171 DRAVLMLSRS 180 (549)
T ss_pred HHHHHHHhHH
Confidence 8866555543
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=75.55 E-value=20 Score=23.65 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 69 (153)
...+.-++++.+.|+-++-.++...+. ++++...-.+-.+|-+.|+..++.+++.+..+.|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 345566778888888888888888765 567777788888888888888888888888888764
No 277
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.34 E-value=31 Score=25.67 Aligned_cols=90 Identities=9% Similarity=-0.015 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH---
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMP-ER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY--- 82 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~--- 82 (153)
..=|.+++..+++.++....-+-- .| .....---|-.|.|.+++..++++-....+..-.-+...|.++...+
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 344678888888888765443332 22 33444445556789999999999999988765555666788888775
Q ss_pred HHhccCChHHHHHHHHh
Q 035927 83 MYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~ 99 (153)
++.-.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 45678999999998743
No 278
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.26 E-value=26 Score=24.65 Aligned_cols=77 Identities=16% Similarity=0.046 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHH
Q 035927 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVG 133 (153)
Q Consensus 54 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ 133 (153)
++|+..|-.+...+.--++...-.+. . |.-..+.++++.++.+..+-... +-.+|+..+.+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-t--yY~krD~~Kt~~ll~~~L~l~~~----------------~~~~n~eil~s 183 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-T--YYTKRDPEKTIQLLLRALELSNP----------------DDNFNPEILKS 183 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-H--HHHccCHHHHHHHHHHHHHhcCC----------------CCCCCHHHHHH
Confidence 45666666666665443333333333 3 24466677777776666431000 23688899999
Q ss_pred HHHHHhcCCchhHhhh
Q 035927 134 VLSACTHNGNETFVIN 149 (153)
Q Consensus 134 ll~~~~~~g~~~~a~~ 149 (153)
|...+-+.|+.+.|.-
T Consensus 184 Las~~~~~~~~e~AYi 199 (203)
T PF11207_consen 184 LASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHhcchhhhhh
Confidence 9999999999998853
No 279
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.20 E-value=17 Score=24.88 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
.|+...|..++..+...|+.++|.+...++..-
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 489999999999999999999999999988753
No 280
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.76 E-value=8.3 Score=23.78 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
-|++....+.+++|-+.+++..|..+|+-.+.+. ..+...|..+++-
T Consensus 39 VP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 39 VPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 4778888888999988899999999888776331 1244567777765
No 281
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.92 E-value=39 Score=26.10 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh--HHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF--TIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+..... +.+.+++..|.++++++.+. +.++.. .+..+..+|.+=...+.++|.+.++.....
T Consensus 135 ~~~a~~-l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKE-LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444443 44889999999999999887 555444 455555554444677888999999988665
No 282
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=73.76 E-value=34 Score=25.93 Aligned_cols=59 Identities=10% Similarity=0.121 Sum_probs=49.8
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhc
Q 035927 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118 (153)
Q Consensus 57 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 118 (153)
.++++.|++.++.|.-..|.++--. +.++=.+.+.+.+|+.+.+-. .-|..++..||.+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLL--LsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsm 321 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLL--LSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSM 321 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHH--HhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHH
Confidence 4688999999999999999998877 699999999999999997632 2277888888877
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=73.65 E-value=24 Score=23.93 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 25 a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+.++=-+|..+=...+..+++.+...|++-+|+.+.+..... +...-..++.+ -.+.++...-..+|+...+
T Consensus 77 ~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeA--A~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 77 AYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEA--AANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 333333333333345667777788888888888887765332 22233456666 2566776666666665544
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.24 E-value=7.3 Score=24.24 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCChH--HHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVD--IARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~--~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.|++---.|......+ +..+-+..+- -|.+....+.+++|-+.+++..|..+|+-.+.+- .+....|..+++-
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 3444445555544433 2333333333 4788899999999999999999999998887442 2333388888876
No 285
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=18 Score=29.15 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=60.9
Q ss_pred HHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh-HHHHHHHHHHHhccCC
Q 035927 14 SGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF-TIVRILTAYMYCKCGD 89 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~g~ 89 (153)
++.+..|+++.|...|.+-. .+|-+-|+.=..+|++.|++++|++=-.+-++ +.|+.. .|.-.=.+ +.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa--~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAA--LFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHH--HHhccc
Confidence 45677888999998887764 34777788888888888888887764444433 456543 34444444 466788
Q ss_pred hHHHHHHHHhcccCC
Q 035927 90 VEKAQRVLRKMLRKD 104 (153)
Q Consensus 90 ~~~a~~~~~~m~~~~ 104 (153)
+++|..-|..=.+.+
T Consensus 86 ~~eA~~ay~~GL~~d 100 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD 100 (539)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888888888876643
No 286
>PRK04841 transcriptional regulator MalT; Provisional
Probab=72.83 E-value=60 Score=27.78 Aligned_cols=141 Identities=12% Similarity=0.049 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHH----
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE------R--DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTI---- 75 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~---- 75 (153)
+..+...+...|++++|...+++... + ....+..+.......|+.++|...++...... -......+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 44455566778999999988887642 1 23344455566677899999999988885421 01111111
Q ss_pred HH-HHHHHHHhccCChHHHHHHHHhcccCC---hh----hHHHHHHHHHhcCCCC----------------CCCCCH-hH
Q 035927 76 VR-ILTAYMYCKCGDVEKAQRVLRKMLRKD---KF----TWTAMIVGLAISDPFP----------------TIRPDE-VT 130 (153)
Q Consensus 76 ~~-li~~~~~~~~g~~~~a~~~~~~m~~~~---~~----~~~~li~~~~~~~~~~----------------~~~p~~-~t 130 (153)
.. .+.. +...|+.+.|.+.+.....+. .. .+..+..++...|..+ +..++. .+
T Consensus 656 ~~~~~~~--~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 656 DKVRLIY--WQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHH--HHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 11 1122 466889999999987765432 11 1233444455555444 223322 45
Q ss_pred HHHHHHHHhcCCchhHhhhhc
Q 035927 131 YVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 131 ~~~ll~~~~~~g~~~~a~~~~ 151 (153)
...+-.++.+.|+.++|.+.+
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 666667777899988887654
No 287
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.82 E-value=14 Score=30.38 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=42.2
Q ss_pred HHHHHhcCChHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHHHHHhc---
Q 035927 13 VSGYINRGQVDIARQYFAQM--PERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAYMYCK--- 86 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~--- 86 (153)
...+.-.|+++.|.+++.+. ...+.+++.+.+..+.-- ......-..+.... -.|....|..+|.. |.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL---~~~~~~~~~lls~~~~~~~~ln~arLI~~--Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLL---RVSDSSSAPLLSVDPGDPPPLNFARLIGQ--YTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHH--HHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCC---CCCCccccceeeecCCCCCCcCHHHHHHH--HHHHHh
Confidence 34556679999999999993 334777777776654322 11111113333221 11222678888887 454
Q ss_pred cCChHHHHHHHHhccc
Q 035927 87 CGDVEKAQRVLRKMLR 102 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~ 102 (153)
..++.+|.+.|--+..
T Consensus 340 ~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 340 ITDPREALQYLYLICL 355 (613)
T ss_dssp TT-HHHHHHHHHGGGG
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4567888888877754
No 288
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.87 E-value=8.5 Score=17.60 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=9.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHh
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
.+-..+.+.|++++|...+++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444443
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=71.50 E-value=6.4 Score=17.87 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=11.5
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 035927 45 DGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~ 65 (153)
..+.+.|+.++|.+.|+++++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 334445566666666665543
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.73 E-value=33 Score=23.87 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
...|-.-++. ++.+..++|+.-|.++.+.|..--.+.-.-=... .....|+-..|...|+++-
T Consensus 59 gd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at-~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 59 GDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAAT-LLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred hHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHH-HHhhcccHHHHHHHHHHHh
Confidence 3445555543 3556667777777777666543211111111111 2466677777777777763
No 291
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=70.55 E-value=42 Score=24.99 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC--hHHHHHHHHhcccC---ChhhHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD--VEKAQRVLRKMLRK---DKFTWTA 110 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~--~~~a~~~~~~m~~~---~~~~~~~ 110 (153)
|...|--|-..|.+.|+...|..-|....+-. .++..-+..+-.++ |...|. -.++.++|++..+. |+.+-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL-~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEAL-YYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 77889999999999999999999999987642 34555666666665 444443 46789999999764 3333333
Q ss_pred HHHHHHhcCC
Q 035927 111 MIVGLAISDP 120 (153)
Q Consensus 111 li~~~~~~~~ 120 (153)
+..++...|+
T Consensus 233 LA~~afe~g~ 242 (287)
T COG4235 233 LAFAAFEQGD 242 (287)
T ss_pred HHHHHHHccc
Confidence 3333333333
No 292
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.17 E-value=48 Score=25.99 Aligned_cols=89 Identities=8% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhh--C----CC
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPER----------------DYVLWTAMIDGYLRVNRFREALTLFPEMQT--S----NI 68 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~----~~ 68 (153)
.++.++...+++.+..+....-..| .-.+...|++..+-.|++..|+.+++.+.- . .+
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V 159 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV 159 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC
Confidence 3456677777777777766665432 234577788888889999999999988732 1 24
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 69 ~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
.+..+|.-=-++-+ |.-.++..+|.++|..+
T Consensus 160 ~~~~is~~YyvGFa-ylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 160 PACHISTYYYVGFA-YLMLRRYADAIRTFSQI 190 (404)
T ss_pred cchheehHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45555555555554 88999999999999987
No 293
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.92 E-value=43 Score=24.94 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
-...-+.++..+.-.+.+.-..+.+.+.++..-.-+......+.+. -.+.|+.+.|...|++..+
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~--~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI--SMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH--HHhcccHHHHHHHHHHHHH
Confidence 3455677778777788999999999999987656677788888887 5899999999999998754
No 294
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=69.71 E-value=8.1 Score=27.06 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 035927 11 DIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
++|..|-+.-++.+...+++.|.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~ 159 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLH 159 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555553
No 295
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=69.01 E-value=17 Score=32.21 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=46.7
Q ss_pred cCChHHHHHHHHhCCC-C--------C--HHHHHHHHHHHHhcC--ChHHHHHHHHHHh--hCC---CCCChhHHHHHHH
Q 035927 19 RGQVDIARQYFAQMPE-R--------D--YVLWTAMIDGYLRVN--RFREALTLFPEMQ--TSN---IRPDEFTIVRILT 80 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~-~--------~--~~~~~~li~~~~~~~--~~~~a~~~~~~m~--~~~---~~p~~~t~~~li~ 80 (153)
..++.+=+.++++++. + | ..-|...+.-+...| .+++++++.++=. ..+ ++||...+..+..
T Consensus 864 qkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~ 943 (1265)
T KOG1920|consen 864 QKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYE 943 (1265)
T ss_pred ccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHH
Confidence 3456665556555542 1 1 123555666666555 4555555543321 111 3688888887776
Q ss_pred HH---------------HHhccCChHHHHHHHHhc
Q 035927 81 AY---------------MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 81 ~~---------------~~~~~g~~~~a~~~~~~m 100 (153)
+| +|.++|+.++|++.|+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHh
Confidence 66 677777777777766654
No 296
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.60 E-value=51 Score=25.27 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=57.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CCCHHHHH--HHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCh-hHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMP-------ERDYVLWT--AMIDGYLRVNRFREALTLFPEMQT-----SNIRPDE-FTI 75 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~-------~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~-~t~ 75 (153)
.++...-+.++.++|.++++++. +|+.+.|- .+.+.+...|+++++.+++++.++ .|++|++ ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 44555566678999999999886 35666554 445555567999999999999887 5777744 456
Q ss_pred HHHHHHHHHhccCChHHH
Q 035927 76 VRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a 93 (153)
..+=.-| |-+.|++...
T Consensus 160 Y~lssqY-yk~~~d~a~y 176 (380)
T KOG2908|consen 160 YSLSSQY-YKKIGDFASY 176 (380)
T ss_pred HHHHHHH-HHHHHhHHHH
Confidence 6666554 6666766554
No 297
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.37 E-value=48 Score=27.43 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCH--HHHHHHHHHHHhcCC------------hHHHHHHHHHHhhCCC------CCC
Q 035927 12 IVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNR------------FREALTLFPEMQTSNI------RPD 71 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~~~------~p~ 71 (153)
...-+...|++++|..+|+-..+.+. ...|.++.-...... ...|..+.+.....+. .-.
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 34456678999999999999987643 356666665554322 4566667766655432 224
Q ss_pred hhHHHHHHHHH---HHhccCChHHHHHHHHhcc
Q 035927 72 EFTIVRILTAY---MYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 72 ~~t~~~li~~~---~~~~~g~~~~a~~~~~~m~ 101 (153)
..||..|++.. .+...|+++.|++.++++.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 56777776654 6678999999999999983
No 298
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=67.86 E-value=55 Score=25.38 Aligned_cols=59 Identities=14% Similarity=0.029 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
..|..-..+|...|.+..|+.=+.... +.++..+--+-..+.+.|+.+.++..+++-++
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 334444555566666665554333332 33444554555555566666666666655554
No 299
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=67.64 E-value=33 Score=25.97 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHH
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTA 81 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~ 81 (153)
-=.+++.|+++|.+++|+++....++-. --|+...+..+..-
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~e 151 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQE 151 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 3467899999999999999988876543 23666666665554
No 300
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=67.51 E-value=33 Score=24.06 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC------CCHHHHHHHHH-HHHhcCC--hHHHHHHHHHHhhCCCCCChh----
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE------RDYVLWTAMID-GYLRVNR--FREALTLFPEMQTSNIRPDEF---- 73 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~------~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~p~~~---- 73 (153)
.-++...-.....|++++|..-++++.+ +-...|..+.. +++.++. +.+|..++.-....++ |+..
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL~V 108 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEELGV 108 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHcCC
Confidence 3455555566677889999998888863 24456777777 7777764 5667666665554433 3322
Q ss_pred HHHHHHHHH------------HHhccCChHHHHHHHHhccc
Q 035927 74 TIVRILTAY------------MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 74 t~~~li~~~------------~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+-..|.+. ...+.|+++.|++.++-|.+
T Consensus 109 ~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 109 PPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 222233332 44688999999999998854
No 301
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=66.90 E-value=19 Score=22.16 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCH--HHHHHHHHHHHhc--CChHHHHHHHHHHhhCCC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRV--NRFREALTLFPEMQTSNI 68 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~ 68 (153)
-..++..|...|+.++|..-+.++..|+. .....++..+... ..-+..-.++..+.+.+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34566677777899999999988876621 1233333333333 223445556666666554
No 302
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=66.36 E-value=9.7 Score=16.11 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
|..+-..+...+++++|...+....
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555566666666555544
No 303
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.99 E-value=43 Score=28.27 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC------CHHHHHHHHHHHHhcCChH--HHHHHHHHH-hhCCCCCChhHHHHHHH
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPER------DYVLWTAMIDGYLRVNRFR--EALTLFPEM-QTSNIRPDEFTIVRILT 80 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~li~~~~~~~~~~--~a~~~~~~m-~~~~~~p~~~t~~~li~ 80 (153)
.+|+.+|...|++..+.++++.+-.- =...||.-|+.+++.|+++ +..+-..+. +..-+.-|..||..+++
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 37899999999999999999988621 3457899999999998753 222222222 23336778999999998
Q ss_pred HH
Q 035927 81 AY 82 (153)
Q Consensus 81 ~~ 82 (153)
+.
T Consensus 112 ~s 113 (1117)
T COG5108 112 AS 113 (1117)
T ss_pred hh
Confidence 74
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.95 E-value=30 Score=21.56 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
++|+.+|... +......+++.=-. ....-|..|+..|-..|..++|++++.+...
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4667777766 55555555532211 1223588888988888999999999988876
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.45 E-value=38 Score=29.08 Aligned_cols=70 Identities=7% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----hhCCCCCChhHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFTIVRI 78 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~t~~~l 78 (153)
+-.++..+.+..+.+.+..+.+...+.++.-|-.+++.|++.+.++...++..+. .....-|-....++|
T Consensus 708 ~~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~L 781 (933)
T KOG2114|consen 708 GQDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQIL 781 (933)
T ss_pred hHHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 3456777778888888888888887779999999999999998776666655554 334444544444443
No 306
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=65.09 E-value=1.7 Score=34.98 Aligned_cols=51 Identities=20% Similarity=0.389 Sum_probs=36.4
Q ss_pred HHHHHHhhCCCCCChhHHHH-----HHHHH----------------------------HHhccCChHHHHHHHHhcccCC
Q 035927 58 TLFPEMQTSNIRPDEFTIVR-----ILTAY----------------------------MYCKCGDVEKAQRVLRKMLRKD 104 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~-----li~~~----------------------------~~~~~g~~~~a~~~~~~m~~~~ 104 (153)
.+++++.-.|++||..||++ ++..| .-+|...+++-+++|++|.+-+
T Consensus 254 ~IleDl~~LgIkpd~~TyTSDyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw~EM~kGs 333 (712)
T KOG1147|consen 254 VILEDLSLLGIKPDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIWEEMKKGS 333 (712)
T ss_pred HHHHHHHHhCcCcceeeechhhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHHHHHhccc
Confidence 45666667799999888764 67776 4456777888899999987654
Q ss_pred hhhH
Q 035927 105 KFTW 108 (153)
Q Consensus 105 ~~~~ 108 (153)
..-+
T Consensus 334 ~~Gl 337 (712)
T KOG1147|consen 334 EKGL 337 (712)
T ss_pred hhhh
Confidence 4433
No 307
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=64.83 E-value=64 Score=25.04 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=54.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhcc
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMID---GYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKC 87 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~ 87 (153)
.+-+.+...|++.+|+.-|+.-.+-|+..|-++.+ .|..-|+-..|+.=+...++ .+||-..-.+==.. ++.+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~-vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGV-VLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhch-hhhhc
Confidence 34556666788888888888877666666665544 33344655555555555544 25663333222222 35777
Q ss_pred CChHHHHHHHHhcccC
Q 035927 88 GDVEKAQRVLRKMLRK 103 (153)
Q Consensus 88 g~~~~a~~~~~~m~~~ 103 (153)
|+++.|+.=|+.+.+.
T Consensus 120 Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQH 135 (504)
T ss_pred ccHHHHHHHHHHHHhc
Confidence 7788887777777543
No 308
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=64.50 E-value=26 Score=20.40 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=24.2
Q ss_pred ChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcC
Q 035927 21 QVDIARQYFAQMPE---RDYVLWTAMIDGYLRVN 51 (153)
Q Consensus 21 ~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~ 51 (153)
+.+.|..++..++. +++..||++-+.+.++.
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 45678888888874 58889999998887764
No 309
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=64.01 E-value=24 Score=19.85 Aligned_cols=47 Identities=6% Similarity=0.001 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.++...++.+++..++..-+++++..+.+..+.|. .+..+|---++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 35566788888888888888888888888888775 455555555554
No 310
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.97 E-value=40 Score=22.35 Aligned_cols=84 Identities=10% Similarity=0.184 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---C--CCChhHHHHHHHHHHHhccCC-hHHHHHHHHhcccCChhhHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSN---I--RPDEFTIVRILTAYMYCKCGD-VEKAQRVLRKMLRKDKFTWTA 110 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~--~p~~~t~~~li~~~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~ 110 (153)
....|.++.-.+..+++.....+++.+..-. + ..|-.+|.+++++ .++... --.+..+|+.+++.
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~S--lsnSsSaK~~~~~Lf~~Lk~~------- 109 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKS--LSNSSSAKLTSLTLFNFLKKN------- 109 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHH--HccChHHHHHHHHHHHHHHHc-------
Confidence 4568888888888888888888888884321 1 3577889999998 355555 34578888888875
Q ss_pred HHHHHHhcCCCCCCCCCHhHHHHHHHHHhcC
Q 035927 111 MIVGLAISDPFPTIRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 111 li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~ 141 (153)
+.+++..-|..+|+++.+.
T Consensus 110 ------------~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 110 ------------DIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ------------CCCCCHHHHHHHHHHHHcC
Confidence 3567777777777777665
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.20 E-value=82 Score=25.72 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC--CHHH---HHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPER--DYVL---WTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
...|+.-|.+.+++++|..++..|.=. ...+ .+.+.+.+.+..--++.+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 356788999999999999999999611 2333 444455555554345555566655543
No 312
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.94 E-value=44 Score=28.12 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=39.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHH
Q 035927 14 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a 93 (153)
..++..|..+.+.++-+++...+..+.-.+-..+.+...+--|-++|..|-.. .++++. ....++|.+|
T Consensus 724 ~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVql--Hve~~~W~eA 792 (1081)
T KOG1538|consen 724 EICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQL--HVETQRWDEA 792 (1081)
T ss_pred hhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhh--eeecccchHh
Confidence 34444555555555555555444444444444444455555555555555321 223343 3555666666
Q ss_pred HHHHHhccc
Q 035927 94 QRVLRKMLR 102 (153)
Q Consensus 94 ~~~~~~m~~ 102 (153)
.++-+..++
T Consensus 793 FalAe~hPe 801 (1081)
T KOG1538|consen 793 FALAEKHPE 801 (1081)
T ss_pred HhhhhhCcc
Confidence 665555543
No 313
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.83 E-value=30 Score=22.60 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 56 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
...-++....-.+.|+......-+++| -|-+++..|.++|+.++.+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~--RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRAC--RRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHH--HHhccHHHHHHHHHHHHHh
Confidence 334455556678899999999999998 9999999999999999653
No 314
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=62.16 E-value=46 Score=29.22 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=49.5
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHH
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~ 113 (153)
....+.+++++|+.|.+.|+.+....|-.-.... |.+.+.+++|.++|..-++.......-|..
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~-lE~k~~~keA~~v~q~Giq~~aeP~~rL~~ 153 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKH-LERKEYFKEAKEVFQLGIQNKAEPLERLLR 153 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 5567899999999999999988766666666654 899999999999999987764443333333
No 315
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.84 E-value=37 Score=28.62 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=51.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhC--CCCCChhHHHHHHHHHHHhccCChHH------HHHHHHhcc-cCChhhHHHHH
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTS--NIRPDEFTIVRILTAYMYCKCGDVEK------AQRVLRKML-RKDKFTWTAMI 112 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~~~~~~~g~~~~------a~~~~~~m~-~~~~~~~~~li 112 (153)
+|+.+|..+|++..+.++++.+... |-+.=..-+|..|+. +.+.|.++- |.+.+++-. .-|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~--~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIRE--IIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHH--HHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence 8999999999999999999999754 445556678899998 589997642 333333332 12666777666
Q ss_pred HHH
Q 035927 113 VGL 115 (153)
Q Consensus 113 ~~~ 115 (153)
.+-
T Consensus 111 ~~s 113 (1117)
T COG5108 111 QAS 113 (1117)
T ss_pred Hhh
Confidence 553
No 316
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=61.47 E-value=42 Score=24.84 Aligned_cols=63 Identities=10% Similarity=0.068 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPER-------DYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
+....+|......+-+.|+++.|...+.++.+. +....-.-.+.+...|+-++|...++...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567889999999999999999988888752 345555566777788999999999888876
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=61.35 E-value=81 Score=25.03 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=43.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChH
Q 035927 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~ 91 (153)
-.....+.|+++.|.++.++.. +...|..|-+...+.|+++-|+.-|.+... |..++-. |.-.|+.+
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lL--y~~~g~~~ 390 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLL--YSSTGDRE 390 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHH--HHHCT-HH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHH--HHHhCCHH
Confidence 3445566777777777766553 555777777777777777777766655442 2233322 34455555
Q ss_pred HHHHHHHhcc
Q 035927 92 KAQRVLRKML 101 (153)
Q Consensus 92 ~a~~~~~~m~ 101 (153)
+..++-+...
T Consensus 391 ~L~kl~~~a~ 400 (443)
T PF04053_consen 391 KLSKLAKIAE 400 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.99 E-value=58 Score=22.92 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=49.6
Q ss_pred HHHHHHHHhCCC-C---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCChhHHHHHHHHHHHhccCChHHHH
Q 035927 23 DIARQYFAQMPE-R---DYVLWTAMIDGYLRVNRFREALTLFPEMQTS---NIRPDEFTIVRILTAYMYCKCGDVEKAQ 94 (153)
Q Consensus 23 ~~a~~l~~~m~~-~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~li~~~~~~~~g~~~~a~ 94 (153)
+.|.+.|-.+.. + |+..--.|...| ...+.+++..++.+..+. +-.+|...+.+|... |-+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~--~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASI--YQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HHHhcchhhhh
Confidence 456666666653 2 444444444444 467799999999988753 347899999999998 69999988874
No 319
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=59.72 E-value=16 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=26.5
Q ss_pred CchhH-HHHHHHHHHhcCChHHHHHHHHhCC
Q 035927 4 KDVIS-WTDIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 4 pd~~~-~~~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
||... ||.-|....+.|++++|+.+.++-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe 284 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAE 284 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666 8999999999999999999998864
No 320
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.62 E-value=45 Score=21.48 Aligned_cols=44 Identities=18% Similarity=0.118 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCCCCCChhH-HHHHHHHHHHhccCChHHHHHHHHh
Q 035927 54 REALTLFPEMQTSNIRPDEFT-IVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 54 ~~a~~~~~~m~~~~~~p~~~t-~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
+++.++|..|.+.|+...... |...-.. +...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~--lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQL--LEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHH--HHHcCCHHHHHHHHHc
Confidence 446789999999998665444 4444444 6899999999999863
No 321
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.16 E-value=73 Score=23.79 Aligned_cols=64 Identities=6% Similarity=0.131 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 035927 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
.++..+--.+|+.+++.+++.+-+++++.-... +..-|...|..+|+. ..+.|+..-..++.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~l--i~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKL--IVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHH--HHHcCCHHHHHHHhhC
Confidence 357788899999999999999999999888755 566799999999999 5999999988888776
No 322
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.74 E-value=55 Score=24.69 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
++...+.|..+|.+.+|.++.+..+.-+ +.+...+-.++.. |+..|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~--la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMAS--LATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHH--HHHhccchhhhhHHHHH
Confidence 4555566667788888888777776543 3466666666666 57777766666555555
No 323
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=58.45 E-value=40 Score=20.61 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc-cCChHHHHHHHHhcccCChhhHHHHHHHHHhc
Q 035927 41 TAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK-CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118 (153)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 118 (153)
..++..|...++.++|..-+.++.... --......+|..+ +-+ ...-+..-.++..+.+.+..+-+.+..|+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~-le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~ 81 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECA-LEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDL 81 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHH-HTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456667778899999999888874332 2234445555553 334 23345567777777766666666666665544
No 324
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.18 E-value=92 Score=24.65 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-----CCHH--HHHHHHHHHHh---cCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE-----RDYV--LWTAMIDGYLR---VNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~--~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
+.+.+...|..|+++.|+++.+.-++ ++.. .=..|+.+-+. ..+...|.+.-.+-. .+.||..--..+
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHH
Confidence 56788899999999999999987653 2221 12222222211 123444444433332 244554433333
Q ss_pred HHHHHHhccCChHHHHHHHHhcc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
--- .|.+.|+..++-++++.+=
T Consensus 269 AAr-alf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 269 AAR-ALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHH-HHHhccchhhhhhHHHHHH
Confidence 322 2577777777777777663
No 325
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.89 E-value=74 Score=23.50 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
...-...+..+...|++.+|++++.+.++
T Consensus 127 v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 127 VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33445556666677777777777777654
No 326
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=57.06 E-value=37 Score=27.37 Aligned_cols=47 Identities=13% Similarity=0.308 Sum_probs=24.8
Q ss_pred HhcCChHHHHHHHHhCCC--C---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035927 17 INRGQVDIARQYFAQMPE--R---DYVLWTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
-+.|+.++|.+.|.+|.+ | +....-.|++++...+.+.++..++.+-
T Consensus 270 rklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 270 RKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344556666555555532 1 2334455555555555555555555554
No 327
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.83 E-value=39 Score=20.81 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=29.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChH
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~ 91 (153)
+++.+...+..-.|.++++.+.+.+..++..|.--.|+. +.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~--L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLEL--LEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHH--HHhCCCEE
Confidence 455555555555677777777777666666666666666 46666543
No 328
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.76 E-value=48 Score=20.94 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHhCCC-CCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 19 RGQVDIARQYFAQMPE-RDYVLWTAMID--GYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~-~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
...-++|..+.+.+.+ ++..-...||+ .+.+.|++++| +.. -...-.||...|-++-. .|.|-.+++..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~-~~~~~~pdL~p~~AL~a----~klGL~~~~e~ 90 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLL-PQCHCYPDLEPWAALCA----WKLGLASALES 90 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHH-HTTS--GGGHHHHHHHH----HHCT-HHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHh-cccCCCccHHHHHHHHH----HhhccHHHHHH
Confidence 3456777777777763 34344455554 45578999998 222 22334699999988876 68999999999
Q ss_pred HHHhcccCChhhHHHHHH
Q 035927 96 VLRKMLRKDKFTWTAMIV 113 (153)
Q Consensus 96 ~~~~m~~~~~~~~~~li~ 113 (153)
.+.++..++.+.--....
T Consensus 91 ~l~rla~~g~~~~q~Fa~ 108 (116)
T PF09477_consen 91 RLTRLASSGSPELQAFAA 108 (116)
T ss_dssp HHHHHCT-SSHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 999887664443333333
No 329
>PRK11906 transcriptional regulator; Provisional
Probab=56.25 E-value=1e+02 Score=24.63 Aligned_cols=61 Identities=11% Similarity=0.015 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
|...-..+-....-.++++.|...|++....+ --++...+..++. .-+|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~----~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH----FHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH----HHcCCHHHHHHHHHHH
Confidence 44444444444444455555555555554432 1123333333333 2355555555555553
No 330
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=54.98 E-value=81 Score=23.05 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc----CChhhHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR----KDKFTWTA 110 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~ 110 (153)
..-|+.-+..+ +.|++++|...|+.+.+. ...| ...+--.++.+ +.+.++.+.|...+++... +.-..|-.
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA--~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYA--YYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHH--HHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 34566666554 889999999999999854 3333 44444444555 6899999999999999854 23455666
Q ss_pred HHHHHHhcCCCC
Q 035927 111 MIVGLAISDPFP 122 (153)
Q Consensus 111 li~~~~~~~~~~ 122 (153)
-|.|++.-..++
T Consensus 112 YlkgLs~~~~i~ 123 (254)
T COG4105 112 YLKGLSYFFQID 123 (254)
T ss_pred HHHHHHHhccCC
Confidence 666666543333
No 331
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=54.65 E-value=88 Score=23.35 Aligned_cols=78 Identities=8% Similarity=0.237 Sum_probs=50.8
Q ss_pred hHHHHHHHHhCCC-------CCHHHHHHHHHHHHhcCC----hHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCC
Q 035927 22 VDIARQYFAQMPE-------RDYVLWTAMIDGYLRVNR----FREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 22 ~~~a~~l~~~m~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~ 89 (153)
..+|..+|+.|++ ++-.++..|+.. ..++ .+.++..|+.+.+.|+.. |..-+-+-|-+ +.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLa--L~~~~~ 194 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILA--LSEGDD 194 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH--hccccc
Confidence 5679999999984 366778888765 3333 467888899999888754 44334444433 132222
Q ss_pred ---hHHHHHHHHhcccC
Q 035927 90 ---VEKAQRVLRKMLRK 103 (153)
Q Consensus 90 ---~~~a~~~~~~m~~~ 103 (153)
...+.++++.+.+.
T Consensus 195 ~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 195 QEKVARVIELYNALKKN 211 (297)
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 34677888888776
No 332
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=54.41 E-value=30 Score=21.59 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=32.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChH
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~ 91 (153)
.+++.+.+.+..-.|.++++.+.+.+...+..|.=--|+. +.+.|-+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~--L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDL--LEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHH--HHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHH--HHHCCeEE
Confidence 4566666666677788899888888877777766666665 46666543
No 333
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=52.43 E-value=72 Score=21.68 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=51.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCChhHHHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPDEFTIVRILTAY 82 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~li~~~ 82 (153)
|+...|..+++.+.+.|++.....+..-=.-+|.......+-.+. +....+.++=-+|..+ + ..+..+++.
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~iiev- 98 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEIIEV- 98 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHHHHH-
Confidence 666688888888888888877777765544344333332222221 2223334444444322 1 134555665
Q ss_pred HHhccCChHHHHHHHHhccc
Q 035927 83 MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~ 102 (153)
+...|++-+|.+..++...
T Consensus 99 -LL~~g~vl~ALr~ar~~~~ 117 (167)
T PF07035_consen 99 -LLSKGQVLEALRYARQYHK 117 (167)
T ss_pred -HHhCCCHHHHHHHHHHcCC
Confidence 4778888888888877543
No 334
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.42 E-value=20 Score=22.35 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE 34 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 34 (153)
.-|..|+..|...|..++|.+++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3488999999999999999999998875
No 335
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=52.17 E-value=98 Score=23.66 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=49.0
Q ss_pred HHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+.|..++-...++.+.+...+...-.+|+++.. .|+.+.-...++.+..+|++++....+.+...
T Consensus 286 ~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~ 350 (354)
T TIGR01914 286 YLKARDFYSWPKFVDFLARRDPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEI 350 (354)
T ss_pred HHhhhhhcchHHHHHHHhccChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 445555566777777777777777777777764 45567778888889999999999988888776
No 336
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.75 E-value=50 Score=23.71 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHh----hCCC-CCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 23 DIARQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFPEMQ----TSNI-RPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 23 ~~a~~l~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
+.|.+.|...... -...--.|-.-|.+.|++++|.++|+.+. +.|. .+...+...+..+ +.+.|+.+....
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C--a~~~~~~~~~l~ 239 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC--AKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH--HHHhCCHHHHHH
Confidence 4777777777643 67777789999999999999999999884 3453 4566666666666 699999988777
Q ss_pred HHHhc
Q 035927 96 VLRKM 100 (153)
Q Consensus 96 ~~~~m 100 (153)
+-=++
T Consensus 240 ~~leL 244 (247)
T PF11817_consen 240 TSLEL 244 (247)
T ss_pred HHHHH
Confidence 65443
No 337
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=1.1e+02 Score=23.58 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=39.3
Q ss_pred hcCChHHHHHHHHHHhhC---CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 49 RVNRFREALTLFPEMQTS---NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+.++.++|+.+++++.+. --.||.+.|-..-.+..+...|+..++.+.++...+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456899999999999653 224677666554443337789999999999888765
No 338
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=51.36 E-value=50 Score=19.55 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 24 IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 24 ~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
.+.+++..|.--+..-...+....-+.|+.+.|..+++.+. . +| .-|..++.+ +..+|.-+.|..
T Consensus 19 ~~~~il~~L~~Lt~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r--~~--~Wf~~Fl~A--L~~~~~~~LA~~ 83 (84)
T cd08789 19 DVEEVLPYLTCLTAEDKERIQAAENNSGNIKAAWTLLDTLV-R--RD--NWLEPFLDA--LRECGLGHLARL 83 (84)
T ss_pred cHHHHHhhCCcCCHHHHHHHHHHHhcCChHHHHHHHHHHHh-c--cC--ChHHHHHHH--HHHcCCHHHHHh
Confidence 34555555553344445555555556788888888888888 2 23 356778887 477777666643
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.25 E-value=12 Score=28.82 Aligned_cols=63 Identities=11% Similarity=0.058 Sum_probs=43.5
Q ss_pred HHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----CCCCCHhHHHHHHHHHhcCCchh
Q 035927 83 MYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----TIRPDEVTYVGVLSACTHNGNET 145 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----~~~p~~~t~~~ll~~~~~~g~~~ 145 (153)
.|.+.|.+++|++-|..-.. | |.+++.....+|.+...|. .+.--...=...+++|++.|.-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 46889999999999988653 4 8889999999999988887 22111222334567777654433
No 340
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.02 E-value=53 Score=19.77 Aligned_cols=64 Identities=13% Similarity=-0.024 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 25 ARQYFAQMPERDYVLWTAMIDGYL---RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 25 a~~l~~~m~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
+.++++.+.+.+..|..-.=+--+ ..|+.+.|.+++.... .| | ..|..++.+ +-..|.-+.|.+
T Consensus 21 ~~~v~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~a--LreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQA--LRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHH--HHHcCchhhhhc
Confidence 566777776665444332222222 4578888888888887 43 3 457788887 477777666543
No 341
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=50.80 E-value=1.4e+02 Score=24.38 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc-----CChhhHHHHHH
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMIV 113 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~ 113 (153)
+-..+-+.|+.++|.+.+++|.+.. ..-....-..||.+ +...++..++++++.+-.+ .-..+|++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~--LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA--LLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH--HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3344446799999999999997643 22233455667776 6999999999999988753 23567777554
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.79 E-value=86 Score=22.10 Aligned_cols=90 Identities=4% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC-HHHHHHH-----HHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERD-YVLWTAM-----IDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
|..++.... .+.+ +.....+++...+ ..+|..+ -..++..+++++|...++.-... |....+..++.--
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lR 131 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALR 131 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHH
Confidence 445555443 2222 3344444444333 3344333 23444567888888877766542 4445555555432
Q ss_pred ---HHhccCChHHHHHHHHhcccC
Q 035927 83 ---MYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 83 ---~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+....|..++|++.++....+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhccccc
Confidence 356777888888888777665
No 343
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=50.00 E-value=19 Score=20.19 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHhhCC-CCCCh
Q 035927 52 RFREALTLFPEMQTSN-IRPDE 72 (153)
Q Consensus 52 ~~~~a~~~~~~m~~~~-~~p~~ 72 (153)
+++.|+..|.++.+.| ++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7999999999998765 55554
No 344
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.97 E-value=87 Score=21.89 Aligned_cols=66 Identities=14% Similarity=0.259 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhhCCCCC--ChhHHHHHHHHH---HHhccCChHHHHHHHHhccc-CChhhHHHHHHHHHhc
Q 035927 53 FREALTLFPEMQTSNIRP--DEFTIVRILTAY---MYCKCGDVEKAQRVLRKMLR-KDKFTWTAMIVGLAIS 118 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~---~~~~~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~ 118 (153)
++.|+.+|+...+.--+| -......+|..- ++.+.|.+++|.+++++..+ ++......-+....+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHc
Confidence 679999998887653333 233333333211 23899999999999999865 4444444444444444
No 345
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=49.79 E-value=74 Score=21.03 Aligned_cols=80 Identities=19% Similarity=0.313 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccC----ChhhHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----DKFTWTA 110 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~ 110 (153)
...|+.-...+ +.|++++|...|+.+... ...| ....--.++.+ |.+.|++++|...+++.++- --..|-.
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~ya--yy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYA--YYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34455554444 889999999999999765 3333 33444455555 79999999999999999652 2345666
Q ss_pred HHHHHHhcC
Q 035927 111 MIVGLAISD 119 (153)
Q Consensus 111 li~~~~~~~ 119 (153)
.+.|++...
T Consensus 88 Y~~gL~~~~ 96 (142)
T PF13512_consen 88 YMRGLSYYE 96 (142)
T ss_pred HHHHHHHHH
Confidence 666666553
No 346
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.46 E-value=37 Score=20.26 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred CHHHHH-HHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 36 DYVLWT-AMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 36 ~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
+-.-|| ++++.+.++.-.++|+++++-|.+.|-
T Consensus 29 ~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 29 DFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred CcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 444554 456667777888999999999998883
No 347
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=49.29 E-value=1.4e+02 Score=24.12 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhc-C
Q 035927 41 TAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS-D 119 (153)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-~ 119 (153)
..|+.-|...|++.+|-.-++++-- .+---.+.+.+++.+ ..+.|+-.-.+++++.+-+.+.+|-|.|-.||.+- +
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~--mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMV--MEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYD 589 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhc
Confidence 3455555556666666555544321 111233455555555 35666655566666666555666666666666554 1
Q ss_pred CCC---CCCCCH-hHHHHHHHHHhcCC
Q 035927 120 PFP---TIRPDE-VTYVGVLSACTHNG 142 (153)
Q Consensus 120 ~~~---~~~p~~-~t~~~ll~~~~~~g 142 (153)
-++ ---||. .-|+..+.-|.+.|
T Consensus 590 sl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 590 SLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred cCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 111 112554 44677777776666
No 348
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=48.86 E-value=49 Score=18.75 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=27.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
..++.+.+.+++++..+.|+.|.....+.+.-+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~ 45 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPA 45 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 468899999999999988998887777777776
No 349
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=48.39 E-value=82 Score=26.67 Aligned_cols=87 Identities=16% Similarity=0.270 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-----------CCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHhhCCCCCChhHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMP-----------ERDYVLWTAMIDGYLRVNRF--REALTLFPEMQTSNIRPDEFTI 75 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~-----------~~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~t~ 75 (153)
+.+=+.-|...|.+++|.++----. .-+...++..=++|.+..+. -+...-+++|++.|..|+....
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl 638 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL 638 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence 4444555667777777765421111 12566788888888887654 4555567788889999998765
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhc
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
.... +-.|++.+|-++|.+-
T Consensus 639 A~~~-----Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 639 ADVF-----AYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HHHH-----HhhhhHHHHHHHHHHc
Confidence 5544 3345555555555443
No 350
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=47.25 E-value=1.4e+02 Score=23.64 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=47.2
Q ss_pred cCChHHHHHHHHhCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 19 RGQVDIARQYFAQMPERDY---VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
.|+.++|.+=|+.|..... .-...|.-..-+.|..+.|...-++.-..--. =.=.....+.. .+..|+|++|++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~--r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEA--RCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHH--HHhcCChHHHHH
Confidence 5777777777777764211 12222222223456666666666655433211 12244556666 589999999999
Q ss_pred HHHhcc
Q 035927 96 VLRKML 101 (153)
Q Consensus 96 ~~~~m~ 101 (153)
+.+.-.
T Consensus 210 Lvd~~~ 215 (531)
T COG3898 210 LVDAQR 215 (531)
T ss_pred HHHHHH
Confidence 988764
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.99 E-value=60 Score=19.18 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=27.0
Q ss_pred hcCChHHHHHHHHHHhhCCCCC--ChhHHHHHHHHHHHhccCChHHHHHH
Q 035927 49 RVNRFREALTLFPEMQTSNIRP--DEFTIVRILTAYMYCKCGDVEKAQRV 96 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~li~~~~~~~~g~~~~a~~~ 96 (153)
...+-++|+..|....+.-..| --.++..++.+ |+.-|+.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA--~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQA--HMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4555667777777666543322 23455666666 5777777666554
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=46.40 E-value=93 Score=21.95 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhhCCC----CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 53 FREALTLFPEMQTSNI----RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~----~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+..|++.|.+..+..- .-|..+..=||..+ ..+.|+.++|.+.|.++...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL-~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGEL-NRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHcC
Confidence 5688888888865432 23556666677775 88999999999999999764
No 353
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.22 E-value=1.2e+02 Score=22.38 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHH
Q 035927 25 ARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94 (153)
Q Consensus 25 a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~ 94 (153)
+..+|.-..+|.+...-.++..|. .+++++|.+++.++-+.|+.|. ...+.+.+. ++.-+..+-.
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv---~K~~~~~E~~ 291 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRV---VKNMDVAESL 291 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHH---HHhccHHHHH
Confidence 344454455567777777777664 5679999999999999998775 445667776 5666555444
No 354
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=45.85 E-value=69 Score=19.59 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPER 35 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~ 35 (153)
..++..|...|++++|.+-+.++..|
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~ 31 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLP 31 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCC
Confidence 44556666667777777777777655
No 355
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=45.01 E-value=91 Score=24.24 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=48.4
Q ss_pred HHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh
Q 035927 14 SGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~ 90 (153)
+-|.+.|++++|+..|.+-. .| |.+++..=..+|.+...+..|+.=-...+. .=...+.+ |.|.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--------Ld~~Y~KA--YSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--------LDKLYVKA--YSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--------hhHHHHHH--HHHHHHH
Confidence 46888999999999998765 34 777777777778777776655543333322 11344565 5666655
Q ss_pred HHHHHHHHhc
Q 035927 91 EKAQRVLRKM 100 (153)
Q Consensus 91 ~~a~~~~~~m 100 (153)
..++......
T Consensus 175 R~~Lg~~~EA 184 (536)
T KOG4648|consen 175 RESLGNNMEA 184 (536)
T ss_pred HHHHhhHHHH
Confidence 5554444433
No 356
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=44.79 E-value=1.2e+02 Score=21.84 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=16.5
Q ss_pred HhccCChHHHHHHHHhcc
Q 035927 84 YCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~ 101 (153)
|.+.|++++|.++|+.+.
T Consensus 188 y~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 799999999999999984
No 357
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=44.56 E-value=1.3e+02 Score=22.27 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=35.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 13 VSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
..+.-+.|+++...+....... ++...|.++... +.++.+++...++..++
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 4566678888887777777765 344555555543 77888888887777754
No 358
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.46 E-value=1.8e+02 Score=26.33 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 41 TAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
-.|..-+...++.-+|-++..+-.+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhc
Confidence 4555555556666666666555543
No 359
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=44.36 E-value=59 Score=21.56 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=23.5
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+.|-+.+...++++|.++|+..+...|+-.+.-
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 445566667788888888887777777766653
No 360
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.29 E-value=81 Score=25.01 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=55.7
Q ss_pred CChHHHHHHHHhCCCCCHHH---------------HHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCChhHHHHHHHH
Q 035927 20 GQVDIARQYFAQMPERDYVL---------------WTAMIDGYLRVNRFREALTLFPEMQTS---NIRPDEFTIVRILTA 81 (153)
Q Consensus 20 g~~~~a~~l~~~m~~~~~~~---------------~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~li~~ 81 (153)
++.+.+...|.+-...++.+ |.-=-+-..+.|++.+|.+.+.+.+.. +.+|++..|.-.-..
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 45666777776665322221 222223345678899999999988754 466777777666665
Q ss_pred HHHhccCChHHHHHHHHhcccCC
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRKD 104 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~~ 104 (153)
..+.|++++|+.--+...+-|
T Consensus 297 --~~rLgrl~eaisdc~~Al~iD 317 (486)
T KOG0550|consen 297 --NIRLGRLREAISDCNEALKID 317 (486)
T ss_pred --hcccCCchhhhhhhhhhhhcC
Confidence 589999999988888777654
No 361
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.95 E-value=63 Score=22.55 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=14.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhh
Q 035927 43 MIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
.+-.|.++|.+++|.+++++.-+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456667777777777766655
No 362
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.88 E-value=74 Score=20.89 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=13.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhH
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 74 (153)
+++.+.+.++.-.|.++++++++.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33344444333445555555544443333333
No 363
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=43.78 E-value=67 Score=18.84 Aligned_cols=56 Identities=5% Similarity=-0.002 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
.+..+++.+.+.|+ .+..-|..+- +..-..+.|.++++.+.+.+..++.....++.
T Consensus 16 ~v~~ilD~L~~~~V-it~e~~~~I~-----a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L~ 71 (82)
T cd08330 16 NVDPILDKLHGKKV-ITQEQYSEVR-----AEKTNQEKMRKLFSFVRSWGASCKDIFYQILR 71 (82)
T ss_pred hHHHHHHHHHHCCC-CCHHHHHHHH-----cCCCcHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45567777777775 4555555544 34566788888888888777777776666664
No 364
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.67 E-value=1.8e+02 Score=23.70 Aligned_cols=93 Identities=9% Similarity=-0.027 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPERD-YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
..++.|+..+. .=+.++-.+++.++.. . ...+..+++++...|-......+.+.+.+..+.+ ...-..+.......
T Consensus 311 ~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~ 387 (574)
T smart00638 311 AKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTA 387 (574)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhh
Confidence 34555554443 3344556666666554 3 6788999999999997776666666666555543 22222232221125
Q ss_pred ccCChHHHHHHHHhccc
Q 035927 86 KCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~ 102 (153)
+.-..+-...+++-+..
T Consensus 388 ~~Pt~~~l~~l~~l~~~ 404 (574)
T smart00638 388 RYPTEEILKALFELAES 404 (574)
T ss_pred hcCCHHHHHHHHHHhcC
Confidence 66777777777666543
No 365
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=43.45 E-value=62 Score=19.30 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh-CCCCCChhHHHHHHHHHHHhccCChHHHH
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQT-SNIRPDEFTIVRILTAYMYCKCGDVEKAQ 94 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~t~~~li~~~~~~~~g~~~~a~ 94 (153)
...+....-+.|+.+.|..+++.+.+ . +| .-|..++.+ +-++|.-+.|.
T Consensus 37 ~e~I~a~~~~~g~~~aa~~Ll~~L~~~r--~~--~wf~~Fl~A--L~~~g~~~la~ 86 (88)
T cd08812 37 KEQILAEERNKGNIAAAEELLDRLERCD--KP--GWFQAFLDA--LRRTGNDDLAK 86 (88)
T ss_pred HHHHHHHHhccChHHHHHHHHHHHHHhc--cC--CcHHHHHHH--HHHcCCccHHH
Confidence 33444444445888888888888875 2 23 346677777 46666654443
No 366
>cd08817 CARD_RIG-I_2 Caspase activation and recruitment domain found in RIG-I, second repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), second repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction do
Probab=43.26 E-value=54 Score=19.63 Aligned_cols=48 Identities=15% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREA 56 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a 56 (153)
|..+...+...|....|.++.+-+.+.|...|-..+......++...+
T Consensus 37 ceeI~qi~~~kg~ma~aeKl~ecLlRSDKenWpK~Lk~ALe~~~~~~s 84 (88)
T cd08817 37 CEEIQQIESQKGPMAGAEKLVECLLRSDKENWPKTLKLALDKCDNKDA 84 (88)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhcccCcHHHHHHHHHccCcHHH
Confidence 445555666666666666666666655555555555555555444433
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.02 E-value=1.3e+02 Score=21.90 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 71 DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 71 ~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
|...-..++. |.-.+++..|..+++..
T Consensus 141 dlfi~RaVL~---yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 141 DLFIARAVLQ---YLCLGNLRDANELFDTF 167 (260)
T ss_dssp HHHHHHHHHH---HHHTTBHHHHHHHHHHH
T ss_pred hHHHHHHHHH---HHHhcCHHHHHHHHHHH
Confidence 4444445555 35667777777666555
No 368
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=42.65 E-value=1.3e+02 Score=24.68 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=49.0
Q ss_pred HHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CChhHHHHHHHHHHHhccCChH
Q 035927 16 YINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-PDEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~~~~~~g~~~ 91 (153)
+...|.++.+...+....+ .+..+-..+++...+.|++++|+.+-+-|....+. |...+.. ...+ -..|-++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~ia-a~sa---~~l~~~d 408 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVA-AGSA---DALQLFD 408 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeee-cccH---HHHhHHH
Confidence 3445666666666655542 35566677777777777777777777777766553 3332222 2222 4556667
Q ss_pred HHHHHHHhc
Q 035927 92 KAQRVLRKM 100 (153)
Q Consensus 92 ~a~~~~~~m 100 (153)
++.-.|+++
T Consensus 409 ~~~~~wk~~ 417 (831)
T PRK15180 409 KSYHYWKRV 417 (831)
T ss_pred HHHHHHHHH
Confidence 777777776
No 369
>PHA02884 ankyrin repeat protein; Provisional
Probab=41.69 E-value=74 Score=23.80 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=60.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHH------HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh---
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYV------LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF--- 73 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--- 73 (153)
+.|..-+++++....+.|..+-+..+++.=..++.. ...+.+...++.|+.+-+ +.+.+.|..++..
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eiv----klLL~~GADVN~~~~~ 102 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAA----KLLIRYGADVNRYAEE 102 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCcCcccCC
Confidence 456777888999999999999999888875544432 223334444577776643 4445667666542
Q ss_pred -HHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 74 -TIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 74 -t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..+.+..+ +..|..+-+.-+++.-..
T Consensus 103 ~g~TpLh~A---a~~~~~eivklLL~~GAd 129 (300)
T PHA02884 103 AKITPLYIS---VLHGCLKCLEILLSYGAD 129 (300)
T ss_pred CCCCHHHHH---HHcCCHHHHHHHHHCCCC
Confidence 34455554 677888877777766543
No 370
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=41.57 E-value=1.1e+02 Score=26.45 Aligned_cols=132 Identities=17% Similarity=0.149 Sum_probs=68.8
Q ss_pred HHHhcCChHHHHHHHHhCCCC--CHHHHHHHHHHHH--hcCChHHHHHHHHHHhh--CCCCCC--hhHHHHHHHHHHHhc
Q 035927 15 GYINRGQVDIARQYFAQMPER--DYVLWTAMIDGYL--RVNRFREALTLFPEMQT--SNIRPD--EFTIVRILTAYMYCK 86 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~--~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~--~~~~p~--~~t~~~li~~~~~~~ 86 (153)
++.-.|+++.|++++.+..+. +.+++.+.+.-+. +.+.... +.+.. .+-+|. ..-+.-+|.+ |-+
T Consensus 477 ~LlLsgqfe~AI~fL~~~~~~~~dAVH~AI~l~~lglL~~~~s~~-----~~ll~~d~~d~~k~~~lnf~rLi~~--Ytk 549 (835)
T KOG2168|consen 477 VLLLSGQFERAIEFLHREEPNRIDAVHVAIALAELGLLRTSSSTS-----QELLSIDPNDPPKSRRLNFARLIIA--YTK 549 (835)
T ss_pred HHHHHHhHHHHHHHHHhhcCCcchhHHHHHHHHHhhhhccCCCCC-----CcccccCCCCCcccccccHHHHHHH--HHH
Confidence 334468899999999999876 8888777665443 2222221 12221 122333 4667778877 466
Q ss_pred cCC---hHHHHHHHHhcc-cCChhhHHHHHHHHHhc-----------------------CCCCCCCC---CHhH-HHHHH
Q 035927 87 CGD---VEKAQRVLRKML-RKDKFTWTAMIVGLAIS-----------------------DPFPTIRP---DEVT-YVGVL 135 (153)
Q Consensus 87 ~g~---~~~a~~~~~~m~-~~~~~~~~~li~~~~~~-----------------------~~~~~~~p---~~~t-~~~ll 135 (153)
+-+ ...|.+.+--+. .+|..--+.++.+.+.. |.++...| +..+ .....
T Consensus 550 ~fe~~d~~~al~y~~~lr~~~d~q~~~l~l~~v~~lVl~t~~~f~~iLG~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA 629 (835)
T KOG2168|consen 550 SFEYTDTRVALQYYYLLRLNKDPQGSNLFLKCVCELVLETEEEFDLILGKIKPDGSREPGLLDEFLPLIEDLQKIILEVA 629 (835)
T ss_pred HHHhccchhhhheeeeecccCChhHHHHHHHHHHHHHHhccccHHHHhcccCCCCCCCcchHhhhccchhhHHHHHHHHH
Confidence 622 222333322222 12322233333333332 22223445 3333 33334
Q ss_pred HHHhcCCchhHhhhhccC
Q 035927 136 SACTHNGNETFVINSCNL 153 (153)
Q Consensus 136 ~~~~~~g~~~~a~~~~~~ 153 (153)
+-+-..|++++|..+|.+
T Consensus 630 ~~a~~~G~~~~sI~LY~l 647 (835)
T KOG2168|consen 630 SEADEDGLFEDAILLYHL 647 (835)
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 445579999999988853
No 371
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=41.24 E-value=59 Score=23.12 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 68 ~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
..|....|..++.+. +.+.-.++.+.+++..+.
T Consensus 24 WWp~~~~fevLV~aI-LsQqT~~~~v~~a~~~L~ 56 (218)
T PRK13913 24 WWPNALKFEALLGAV-LTQNTKFEAVEKSLENLK 56 (218)
T ss_pred CCcCcCHHHHHHHHH-HHhhhhHHHHHHHHHHHH
Confidence 456667777777774 777777777777666653
No 372
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=40.58 E-value=13 Score=19.76 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHhhCC-CCCCh
Q 035927 51 NRFREALTLFPEMQTSN-IRPDE 72 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~-~~p~~ 72 (153)
=+++.|...|..+...| ++|+.
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCHHHHHHHHHHHHHcCCCChHh
Confidence 37889999999888765 66654
No 373
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=39.89 E-value=2.2e+02 Score=23.57 Aligned_cols=85 Identities=12% Similarity=0.207 Sum_probs=59.0
Q ss_pred HHhcCChHHHHHHHHhCCC-------CCHHHHHHHHHHHHh--cCChHHHHHHHHHHhhCC---------CCCChhHHHH
Q 035927 16 YINRGQVDIARQYFAQMPE-------RDYVLWTAMIDGYLR--VNRFREALTLFPEMQTSN---------IRPDEFTIVR 77 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~-------~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~---------~~p~~~t~~~ 77 (153)
+...+++..|.+.++.+.. +-...+..++.+... .+..+++.+.++++.... -.|...+|..
T Consensus 149 ~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~l 228 (608)
T PF10345_consen 149 ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFL 228 (608)
T ss_pred HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHH
Confidence 3334788888888888752 234456666666654 466777877777774322 2467888999
Q ss_pred HHHHHHHhccCChHHHHHHHHhc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m 100 (153)
+++.|.+...|+++.+....+.+
T Consensus 229 ll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 229 LLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988788899987777776666
No 374
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=39.73 E-value=80 Score=18.57 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcC
Q 035927 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 119 (153)
..-.+++.+.+.++ .+..-...+-. ......+.|+.+.+.+.+++..++..++.++...+
T Consensus 17 ~i~~llD~Ll~~~V-l~~~E~e~i~~----~~~t~~dkar~Lid~v~~KG~~A~~iF~~~L~~~d 76 (83)
T cd08325 17 VINGLLDDLLEKNV-LNEEEMEKIKE----ENNTIMDKARVLVDSVTEKGQEAGQIFIKHLLNRD 76 (83)
T ss_pred hHHHHHHHHHHcCC-CCHHHHHHHHh----ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 34467777777764 44443333332 22336888888888888888888888888777654
No 375
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=39.52 E-value=57 Score=20.79 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=22.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
++|+.+-++...++|+++++-|.+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 356666678889999999999999984
No 376
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=38.99 E-value=49 Score=15.90 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=16.1
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHH
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRV 96 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~ 96 (153)
.++.+.+.|+.++ ..-.+|. ...|+++.|.+.
T Consensus 5 ~v~~L~~mGf~~~-~~~~AL~-----~~~~nve~A~~~ 36 (37)
T PF00627_consen 5 KVQQLMEMGFSRE-QAREALR-----ACNGNVERAVDW 36 (37)
T ss_dssp HHHHHHHHTS-HH-HHHHHHH-----HTTTSHHHHHHH
T ss_pred HHHHHHHcCCCHH-HHHHHHH-----HcCCCHHHHHHh
Confidence 4455555576444 2222222 335678777765
No 377
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=38.75 E-value=48 Score=19.71 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=23.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE 34 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 34 (153)
.|+...||..++...+.+.+.-|..++.+...
T Consensus 13 ~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~ 44 (83)
T PF10963_consen 13 NPTPTAYNKYINEMAMDNKVAPAHNYLMRIVD 44 (83)
T ss_pred ccCHHHHHHHHHHhccCCCchHHHHHHHHHcC
Confidence 57777788888877777777777766665543
No 378
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=36.93 E-value=90 Score=18.34 Aligned_cols=69 Identities=7% Similarity=0.056 Sum_probs=39.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-hhCCCCCChhHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM-QTSNIRPDEFTIVRI 78 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~t~~~l 78 (153)
++...+..+|++.|.+.|.+-.+..+-+.+.. +..|...-|..+-..|-++. .= -+.|..|+...|..+
T Consensus 4 ~rq~~IL~alV~~Y~~~~~PVgSk~ia~~l~~-s~aTIRN~M~~Le~lGlve~------~p~~s~GriPT~~aYr~~ 73 (78)
T PF03444_consen 4 ERQREILKALVELYIETGEPVGSKTIAEELGR-SPATIRNEMADLEELGLVES------QPHPSGGRIPTDKAYRAL 73 (78)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHCC-ChHHHHHHHHHHHHCCCccC------CCCCCCCCCcCHHHHHHH
Confidence 34556778888888888888888888777543 34444444444433332221 01 235666776666544
No 379
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=36.70 E-value=81 Score=20.80 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.+|..+.+.+....+.++.+.+.+.|+..+..|..-.+.-+
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~el 45 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLREL 45 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 35667778888889999999999999999888888877653
No 380
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=36.06 E-value=1e+02 Score=18.66 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 56 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
+..+++.+.+.|+ .+..-+..+- +.....+.|.++++.+..++...+..++.++.
T Consensus 25 v~~ilD~Ll~~~V-lt~ee~e~I~-----~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L~ 79 (94)
T cd08329 25 VLPILDSLLSANV-ITEQEYDVIK-----QKTQTPLQARELIDTVLVKGNAAAEVFRNCLK 79 (94)
T ss_pred hHHHHHHHHHcCC-CCHHHHHHHH-----cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3346666666664 3333333322 22333566666666666666666666666654
No 381
>COG5210 GTPase-activating protein [General function prediction only]
Probab=36.05 E-value=1.6e+02 Score=23.62 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=42.1
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChh
Q 035927 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106 (153)
Q Consensus 56 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~ 106 (153)
.-+++..|++.|+.+...++.+++.. +.+...++.+.++|+.+--.+..
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~l--F~~~~p~e~~lriwD~lf~eg~~ 409 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTL--FVREFPLEYALRIWDCLFLEGSS 409 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHH--HHhcCCHHHHHHHHHHHHHhccH
Confidence 34688899999999999999999998 59999999999999998654433
No 382
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=35.99 E-value=84 Score=18.23 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.....+++.+. .++++++...+.++...|+.++ ...+.+...
T Consensus 6 ~~i~~i~~~~~-~~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~ 47 (89)
T PF08542_consen 6 EVIEEILESCL-NGDFKEARKKLYELLVEGYSAS-DILKQLHEV 47 (89)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHTT--HH-HHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 33445555553 3588999999999988887554 556666665
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.74 E-value=1.8e+02 Score=21.41 Aligned_cols=134 Identities=10% Similarity=0.105 Sum_probs=71.6
Q ss_pred HHhcCChHHHHHHHHhCCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCC--hhHHHHHHHHH
Q 035927 16 YINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NIRPD--EFTIVRILTAY 82 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~t~~~li~~~ 82 (153)
++-.+++++|.++|.+-.. . -...|--......+.|+-++|-.-|-++-+. .+.|. +.....-|..
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieI- 102 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEI- 102 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHH-
Confidence 4445678888888876642 1 2234555555555666655555555555321 22332 2334444555
Q ss_pred HHhccCChHHHHHHHHhc---ccCChhhHHHHHHHHHhcCCCC-CCCCCHhHHHHHH---HHHhcCCchhHhhhhc
Q 035927 83 MYCKCGDVEKAQRVLRKM---LRKDKFTWTAMIVGLAISDPFP-TIRPDEVTYVGVL---SACTHNGNETFVINSC 151 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m---~~~~~~~~~~li~~~~~~~~~~-~~~p~~~t~~~ll---~~~~~~g~~~~a~~~~ 151 (153)
|.+.|++.-|-+..-.+ -+.+..-+...|..|-..+.+= |-..+...=-.++ ..-+..|.+.+|+++|
T Consensus 103 -yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iy 177 (288)
T KOG1586|consen 103 -YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIY 177 (288)
T ss_pred -HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777666654444 2446666777777776664443 2222222211222 2223667777777765
No 384
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=35.33 E-value=1e+02 Score=18.46 Aligned_cols=56 Identities=7% Similarity=0.049 Sum_probs=37.4
Q ss_pred hccCChHHHHHHHHhcccC------ChhhHHHHHHHHHhcC-CCCCCCCCHhHHHHHHHHHhc
Q 035927 85 CKCGDVEKAQRVLRKMLRK------DKFTWTAMIVGLAISD-PFPTIRPDEVTYVGVLSACTH 140 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~~-~~~~~~p~~~t~~~ll~~~~~ 140 (153)
-+..++.+.+.+|+++... +..-.+-.++-|-... +.+|+++-.-.|..++..+..
T Consensus 7 tK~rni~eLi~fY~ky~~~~~L~~~~r~~~d~~i~~y~~~~~lVDGvPaQGG~~~~i~~~~i~ 69 (85)
T PF07240_consen 7 TKIRNIQELIAFYEKYSPRLPLTPQDRQRIDRFIRRYKEENNLVDGVPAQGGFWGKIVKKIIS 69 (85)
T ss_pred HHHhhHHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHhhcccCcCCCCCchHHHHHHHHH
Confidence 5566777888888887543 3445666777777666 777887777777666655544
No 385
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=35.12 E-value=86 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
.+..++-.++..|+++.|+++.+...++|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 445666677888999999999999998885
No 386
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=35.09 E-value=22 Score=28.17 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhh
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
.+..-+.+--+|+.|+-.....+|+...+-++.-+.. -+..|..+-++|...+++++|++.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~t----------------LSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLST----------------LSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHH----------------HHHHHHHhcchhhhHhhHHHHHhh
Confidence 4444444334689999999999999998764332222 234466666777777777777664
No 387
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.90 E-value=1.7e+02 Score=20.84 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=73.1
Q ss_pred CCCchhHHHHHHHHHHhcCChHH-----HHHHHHhCCCC--------------CHHHHHHHHHHHHh--cCChHHHHHHH
Q 035927 2 KNKDVISWTDIVSGYINRGQVDI-----ARQYFAQMPER--------------DYVLWTAMIDGYLR--VNRFREALTLF 60 (153)
Q Consensus 2 ~~pd~~~~~~li~~~~~~g~~~~-----a~~l~~~m~~~--------------~~~~~~~li~~~~~--~~~~~~a~~~~ 60 (153)
|+++.....++++.+...+--.. ...++-.+... =...|...++|+.- ++++++|.+.+
T Consensus 22 PP~s~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L 101 (226)
T PF13934_consen 22 PPKSDNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYIKFIQGFWLLDHGDFEEALELL 101 (226)
T ss_pred CccCHHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHHHHHHHHHHhChHhHHHHHHHh
Confidence 55666666777776666543221 22222333211 12357888888875 46778887777
Q ss_pred HHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC--ChhhHHHHHHHHHhcCCCC-----CCCCCH---hH
Q 035927 61 PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISDPFP-----TIRPDE---VT 130 (153)
Q Consensus 61 ~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~-----~~~p~~---~t 130 (153)
.+- .+.|+... .++.+ +.+.|+.+.|.++++.+.-+ +...-...+..++.....+ .-.++. ..
T Consensus 102 ~~p---s~~~~~~~--~Il~~--L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~~~~~~~~l 174 (226)
T PF13934_consen 102 SHP---SLIPWFPD--KILQA--LLRRGDPKLALRYLRAVGPPLSSPEALTLYFVALANGLVTEAFSFQRSYPDELRRRL 174 (226)
T ss_pred CCC---CCCcccHH--HHHHH--HHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCHHHHHHHHHhCchhhhHHH
Confidence 222 23333222 46776 57789999999999987654 3333444444444443333 112222 46
Q ss_pred HHHHHHHHh
Q 035927 131 YVGVLSACT 139 (153)
Q Consensus 131 ~~~ll~~~~ 139 (153)
+..++..+.
T Consensus 175 ~e~l~~~~~ 183 (226)
T PF13934_consen 175 FEQLLEHCL 183 (226)
T ss_pred HHHHHHHHH
Confidence 777777776
No 388
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=34.40 E-value=60 Score=15.53 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 52 RFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
.++.|.++|+..+.. -|++.+|-..
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHH
Confidence 467888888888764 3777666443
No 389
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=34.33 E-value=42 Score=22.12 Aligned_cols=62 Identities=13% Similarity=0.246 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+...|.++|-++.+..-+...-.++.+..+..-+|+ .|..+++- ...|++.++.++++....
T Consensus 58 ~~A~~~AmliGL~Nr~~ytT~a~~l~Eal~Lp~rP~--Gyd~l~~l---vm~G~L~d~~~i~~~cE~ 119 (143)
T PF07827_consen 58 QLAWYGAMLIGLHNRTLYTTSARVLPEALSLPSRPS--GYDELAQL---VMSGQLTDPEKIYESCEA 119 (143)
T ss_dssp HHHHHHHHHHHHHCT---SSCCCHHHHHTTSSS--T--THHHHHHH---HHHTB---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccceeeccccccHHHhcCCCCCc--cHHHHHHH---HhccccCCHHHHHHHHHH
Confidence 455799999999988777666677778777665665 57799986 899999998888877643
No 390
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.96 E-value=1.5e+02 Score=19.98 Aligned_cols=68 Identities=18% Similarity=0.025 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHH
Q 035927 23 DIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK 92 (153)
Q Consensus 23 ~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~ 92 (153)
+.+.+++..---+.+..=-.++..+...++.-.|.++++.+.+.+..++..|.--.|.. +.+.|-+..
T Consensus 11 ~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~--L~e~Glv~~ 78 (169)
T PRK11639 11 AQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDF--LLEQGFVHK 78 (169)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHH--HHHCCCEEE
Confidence 34444444433233333335555555555566788888888888777777776666666 477775543
No 391
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.73 E-value=1.3e+02 Score=22.99 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=32.0
Q ss_pred ChHHHHHHH-HHHhhCCCCCChh----HHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC
Q 035927 52 RFREALTLF-PEMQTSNIRPDEF----TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 52 ~~~~a~~~~-~~m~~~~~~p~~~----t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~ 122 (153)
.+++..... ++|++.++ |+.. .|..++++ ++|.+-+++...-.=+...+|.-++.++|..|..+
T Consensus 270 p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsa------veWnKkeelva~qalrhlK~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSA------VEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSE 338 (412)
T ss_pred CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHH------HhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHH
Confidence 344444333 34455554 5544 34444444 34433333322221123556888888888887766
No 392
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=33.34 E-value=1.3e+02 Score=21.56 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCC------------hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNR------------FREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 38 ~~~~~li~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.+...|+++|++.++ +..-..-++.+-..+..|+..-....|++| |
T Consensus 132 ~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~YIKAy-Y 189 (234)
T PF10474_consen 132 FAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENYIKAY-Y 189 (234)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH-c
Confidence 356788889987532 222333334443344568888999999996 5
No 393
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.65 E-value=2e+02 Score=21.07 Aligned_cols=63 Identities=3% Similarity=-0.116 Sum_probs=33.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (153)
+...-..++....+.|..+.-..+++.... ++...-..++.+++...+.+....+++.....+
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~ 231 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSND 231 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTS
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCc
Confidence 334445555666666665555555555543 345556666666666666666666666666543
No 394
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.64 E-value=1.8e+02 Score=20.42 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=62.3
Q ss_pred HHhcCChHHHHHHHHhCCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHhhCCCCCChh-HHHHHHHHHHHhccCC
Q 035927 16 YINRGQVDIARQYFAQMPERDYVLWTAMIDG-----YLRVNRFREALTLFPEMQTSNIRPDEF-TIVRILTAYMYCKCGD 89 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~-----~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~li~~~~~~~~g~ 89 (153)
+.+.++.++|..-|..+...+.-.|-.|-.. .++.|+...|...|++.-...-.|-.. -..-|=.++.+..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 4667889999999999987766666655443 345789999999999997664444333 3333333445689999
Q ss_pred hHHHHHHHHhcccC
Q 035927 90 VEKAQRVLRKMLRK 103 (153)
Q Consensus 90 ~~~a~~~~~~m~~~ 103 (153)
++......+-+..+
T Consensus 148 y~dV~srvepLa~d 161 (221)
T COG4649 148 YDDVSSRVEPLAGD 161 (221)
T ss_pred HHHHHHHhhhccCC
Confidence 99888888777654
No 395
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.32 E-value=3.1e+02 Score=23.18 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=21.4
Q ss_pred HhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035927 17 INRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
.+.|+++.|.++..+. .+..-|..|-++..+.+++..|.+-|...
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555555554333 23344555555555555554444444433
No 396
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.25 E-value=2.3e+02 Score=21.60 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHh----hCCCCCChhHHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQ----TSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~t~~~li~~~ 82 (153)
...|..+...|++.++.+.+.+...+.. .-|.+.|+....+=+...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~ 164 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLI 164 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHh
Confidence 4567888888999888888777666553 447778876666555543
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.69 E-value=54 Score=14.24 Aligned_cols=28 Identities=4% Similarity=-0.029 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 51 NRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
|+.+.|..+|+.+.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34566666666665432 13344444433
No 398
>smart00535 RIBOc Ribonuclease III family.
Probab=31.69 E-value=60 Score=20.31 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=25.1
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 70 p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
.-..++.++|++. |...| ++.+.+++.++..|
T Consensus 93 ~~a~~~eAliGAi-~ld~g-~~~~~~~i~~~~~~ 124 (129)
T smart00535 93 ILADVFEALIGAI-YLDSG-LEAAREFIRDLLGP 124 (129)
T ss_pred HHHHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHH
Confidence 3567899999995 77765 89999999887654
No 399
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=31.62 E-value=40 Score=24.29 Aligned_cols=49 Identities=24% Similarity=0.490 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCCCChhH----------HHHHHHHHHHhccCC-----------hHHHHHHHHhcccC
Q 035927 54 REALTLFPEMQTSNIRPDEFT----------IVRILTAYMYCKCGD-----------VEKAQRVLRKMLRK 103 (153)
Q Consensus 54 ~~a~~~~~~m~~~~~~p~~~t----------~~~li~~~~~~~~g~-----------~~~a~~~~~~m~~~ 103 (153)
..|+.+++.+.++|++||..+ ...++.++ +=..|+ .-.|..+.+++.++
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~dg~gd~eD~~vivlLga~-LHDIGnsVHRd~H~~~sa~La~~IldrIL~k 136 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVTDGVGDEEDSPVIVLLGAY-LHDIGNSVHRDDHELYSAVLALDILDRILSK 136 (269)
T ss_pred chHHHHHHHHHhcCCCcccccccCCchhhhhHHHHHHHH-HHhccchhccccHHHHhHHHhHHHHHHHhhh
Confidence 479999999999999998653 34455553 333332 23466777777553
No 400
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.38 E-value=2e+02 Score=20.70 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=59.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---C--CCH--HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--hhHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---E--RDY--VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD--EFTI 75 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~t~ 75 (153)
+..-.|.|+--|.-...+.+|.+.|.+=. . .|. ..=..-|+..++.|++++|.+........-+.-| ....
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~ 104 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFH 104 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHH
Confidence 33445555555555555555666665443 2 133 3345677888999999999999988864333233 2233
Q ss_pred HHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 76 VRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
-.-.+.+.+.|.|..++|++..+.-..|
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~LA~ 132 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKLAP 132 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHccc
Confidence 3333333358888888888887776443
No 401
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=31.35 E-value=1.5e+02 Score=20.07 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHHHhh-CCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 59 LFPEMQT-SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 59 ~~~~m~~-~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
+++.+.+ .|+.|....+..++.. +.+.-.++.+.++|+.+
T Consensus 153 l~~~l~~~~~i~~~~~~~~W~~~l--F~~~~~~~~~~riwD~~ 193 (199)
T smart00164 153 LYKHLKDKLGIDPSLYALRWFLTL--FARELPLEIVLRIWDVL 193 (199)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHH--HHhhCCHHHHHHHHHHH
Confidence 4444443 5555555555555555 35555556666665554
No 402
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.18 E-value=52 Score=26.86 Aligned_cols=75 Identities=9% Similarity=0.089 Sum_probs=26.9
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 22 VDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 22 ~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
......++.+.+-++...-.-++..|.+.|-.+.|.++.+.+-..-.+ ..-|..-+.- +.+.|+...+..+-+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~--~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSW--FIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHH--HH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHH--HHHCCCHHHHHHHHHHH
Confidence 344455555555444444555556666666666666666655332221 2233333333 36666665555554444
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.85 E-value=1.2e+02 Score=17.97 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=30.5
Q ss_pred HhcCChHHHHHHHHHH----hhCCCCCC--hhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 48 LRVNRFREALTLFPEM----QTSNIRPD--EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 48 ~~~~~~~~a~~~~~~m----~~~~~~p~--~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+.|++.+|.+-+.+. ...+.... ...+..+-.+.+....|++++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3667777775554444 33332221 2223333222235778888888888888743
No 404
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.49 E-value=2e+02 Score=23.59 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHH---HHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 39 LWTAMIDGYLRVNRFREALTLF---PEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~---~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
.+-.|-.+++-.|+.++|..++ ..|..+-+.|........|+ .+.|+.++|...+++.
T Consensus 621 ~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyid----L~~G~~q~al~~lk~~ 681 (696)
T KOG2471|consen 621 LFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYID----LMLGRSQDALARLKQC 681 (696)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHH----HhcCCCcchHHHHHhc
Confidence 4566778888899999999999 44555445555555555555 6899999999988876
No 405
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.32 E-value=2.3e+02 Score=21.03 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=7.2
Q ss_pred hccCChHHHHHHHHh
Q 035927 85 CKCGDVEKAQRVLRK 99 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~ 99 (153)
....++..|++.++.
T Consensus 201 L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 201 LYAHDYVQAEKCYRD 215 (308)
T ss_pred hhHHHHHHHHHHhcc
Confidence 344445555555544
No 406
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.65 E-value=2.1e+02 Score=20.28 Aligned_cols=87 Identities=14% Similarity=0.153 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCHHHHHHH-----HHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 13 VSGYINRGQVDIARQYFAQMP-ERDYVLWTAM-----IDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~-~~~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
-..+...+++++|..-+..-. .+.-..+.++ -+.....|.+++|+.+++.....++.+ ....+-+- .+..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~---~~~elrGD-ill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA---IVAELRGD-ILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH---HHHHHhhh-HHHH
Confidence 456778899999999988665 4433344444 345556799999999998887665422 22223332 3788
Q ss_pred cCChHHHHHHHHhcccC
Q 035927 87 CGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~~ 103 (153)
.|+-++|..-|++-.+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 99999999999988665
No 407
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=29.54 E-value=2e+02 Score=22.17 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=15.8
Q ss_pred HhccCChHHHHHHHHhcccCChhh
Q 035927 84 YCKCGDVEKAQRVLRKMLRKDKFT 107 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~~~~~ 107 (153)
||+.|+-+.|.+.+++--++++.+
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~ 137 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSL 137 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhc
Confidence 677777777777777665554443
No 408
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=29.36 E-value=2e+02 Score=19.96 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 70 p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.-..++.++|++. |...| ++.+.+++..+..
T Consensus 109 ~~ad~~eAliGAi-yld~g-~~~~~~~i~~~~~ 139 (220)
T TIGR02191 109 ILADAFEALIGAI-YLDSG-LEAARKFILKLLI 139 (220)
T ss_pred HHHHHHHHHHHHH-HHhCC-HHHHHHHHHHHHH
Confidence 3467899999996 88877 9999999887743
No 409
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=29.18 E-value=2.7e+02 Score=21.45 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=7.7
Q ss_pred hccCChHHHHHHHHhcc
Q 035927 85 CKCGDVEKAQRVLRKML 101 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~ 101 (153)
...|+|+..++....++
T Consensus 51 I~sG~WD~VL~~vqsLK 67 (508)
T KOG0275|consen 51 INSGHWDTVLKTVQSLK 67 (508)
T ss_pred cccCchHHHHHHHHhcc
Confidence 34444444444444443
No 410
>PRK01381 Trp operon repressor; Provisional
Probab=29.15 E-value=1.1e+02 Score=18.84 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=29.6
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 035927 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPERD 36 (153)
Q Consensus 2 ~~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 36 (153)
.+|+..-|..++..+.+..+.++...+++.+..|+
T Consensus 2 ~~~~~~~W~~~v~ll~~a~~~~~~~~~l~~llTp~ 36 (99)
T PRK01381 2 AEQENQEWQRFVDLLKQAFEEDLHLPLLTLLLTPD 36 (99)
T ss_pred CCcchhhHHHHHHHHHHhccHHHHHHHHHHhCCHH
Confidence 35777889999999999999999999999987663
No 411
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=29.10 E-value=1.4e+02 Score=18.05 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHH-HHhccCChHHHHHHHHhc
Q 035927 55 EALTLFPEMQTSNIRPDEFTIVRILTAY-MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~~~t~~~li~~~-~~~~~g~~~~a~~~~~~m 100 (153)
....+.++-...|+..+-.|...++-.- .|++.|+.+-.+.++++.
T Consensus 11 ~ik~~v~~~~~~gv~~~GiT~~GFl~L~~lfierGR~ETtW~vLR~F 57 (89)
T PF08356_consen 11 DIKKVVRENIPDGVNDNGITLDGFLFLNKLFIERGRHETTWTVLRKF 57 (89)
T ss_pred HHHHHHHHHCCCCcCCCccchhhHHHHHHHHHHhCcchHHHHHHHHc
Confidence 3334444444456666666666555431 378999999999999987
No 412
>PRK05094 dsDNA-mimic protein; Reviewed
Probab=29.06 E-value=55 Score=20.42 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHhhCCCCC-ChhHHHHHHHH
Q 035927 53 FREALTLFPEMQTSNIRP-DEFTIVRILTA 81 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p-~~~t~~~li~~ 81 (153)
++.|.++|-+|-..+..| |...||.=..-
T Consensus 13 id~AYDiFLE~A~dNL~paDi~lFnlqFee 42 (107)
T PRK05094 13 LEQAYDIFLELAADNLDPADILLFNLQFEE 42 (107)
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHHHHHHh
Confidence 577888888888888776 66666655544
No 413
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=29.01 E-value=1.4e+02 Score=18.29 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER 35 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 35 (153)
....|..+++.+.+..+.++...+++.+..|
T Consensus 5 ~~~~w~~~~~ll~~~~~~~~l~~~l~~lLTp 35 (94)
T TIGR01321 5 REQAWEAFLKLLKKADSEDDMQLLLELILTR 35 (94)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHhCCH
Confidence 3456888888888888888888888887655
No 414
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=28.97 E-value=1.4e+02 Score=25.26 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH---------HHhccCChHHHHHHHHhcccC---
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---------MYCKCGDVEKAQRVLRKMLRK--- 103 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~---------~~~~~g~~~~a~~~~~~m~~~--- 103 (153)
.......+++++...|+++-|.+++..-.... -+.......++.+. .=-..|+++.|.+.++-+...
T Consensus 431 ~~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~-l~~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 431 KDEIEEIFLEALLSSGRFSLAKSLYEESSSSP-LSSEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT----TT-HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHhcCCcCC-CCHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 45678999999999999999999988754332 24556666666664 112566788888888887553
Q ss_pred --ChhhHHHHHHHHHhcCCCC
Q 035927 104 --DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 104 --~~~~~~~li~~~~~~~~~~ 122 (153)
...--..+|.+......|.
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f~ 530 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEFS 530 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS-
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 4555677888888877766
No 415
>PF04269 DUF440: Protein of unknown function, DUF440; InterPro: IPR007376 This entry represents hypothetical proteins such as HI1450, which is believed to act as a putative dsDNA mimic. HI1450 is an acidic protein with a core structure consisting of alpha(2)-beta(4), where the alpha-helices are packed against the side of an anti-parallel 4-stranded beta meander. As such, it has some similarity to the dsDNA mimics uracil-DNA glycosylase inhibitor and nuclease A inhibitor (NuiA), including the distribution of surface charges and the position of the hydrophobic cavity []. DNA mimics act to inhibit or regulate dsDNA-binding proteins. ; PDB: 1NNV_A.
Probab=28.92 E-value=50 Score=20.48 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHhhCCCCC-ChhHHH
Q 035927 53 FREALTLFPEMQTSNIRP-DEFTIV 76 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p-~~~t~~ 76 (153)
++.|.++|.+|-..+..| |...||
T Consensus 10 id~AYDiFLE~A~dNL~paDi~lF~ 34 (103)
T PF04269_consen 10 IDQAYDIFLELAPDNLDPADILLFN 34 (103)
T ss_dssp HHHHHHHHHHH-STTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 567888888888887766 444444
No 416
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=28.61 E-value=1.2e+02 Score=17.16 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.++...=...+..+.+.++. ++...+.++.+. +|..+=...+.+ +.+.|+.+....+.+.+.+
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~a--L~~i~~~~~~~~L~~~l~~ 73 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDP-EAIPALIELLKD---EDPMVRRAAARA--LGRIGDPEAIPALIKLLQD 73 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHH-HHHHHHHHHHTS---SSHHHHHHHHHH--HHCCHHHHTHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHcC---CCHHHHHHHHHH--HHHhCCHHHHHHHHHHHcC
Confidence 44444444455555555433 445555555532 555666666666 3666654433333333433
No 417
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=28.50 E-value=1.3e+02 Score=17.70 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
.+.+.+++..-++.+ ....|...|+.+ +.+.|.-+-|.++|
T Consensus 46 ~eq~~~mL~~W~~r~--g~~AT~~~L~~a--L~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDRE--GSQATPETLITA--LNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhc--CccccHHHHHHH--HHHcCcHHHHHhhC
Confidence 567777777776552 244688999998 58888888887765
No 418
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=28.46 E-value=1e+02 Score=16.28 Aligned_cols=14 Identities=14% Similarity=-0.007 Sum_probs=7.3
Q ss_pred CCCChhHHHHHHHH
Q 035927 68 IRPDEFTIVRILTA 81 (153)
Q Consensus 68 ~~p~~~t~~~li~~ 81 (153)
...|..|....+..
T Consensus 17 tgLd~etL~ici~L 30 (48)
T PF12554_consen 17 TGLDRETLSICIEL 30 (48)
T ss_pred CCCCHHHHHHHHHH
Confidence 34455555555554
No 419
>COG2973 TrpR Trp operon repressor [Transcription]
Probab=28.42 E-value=95 Score=19.14 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=24.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPER 35 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 35 (153)
.++...|..+++.+++.-.-+....++.-|..|
T Consensus 8 ~~~~q~W~~fv~ll~~a~~~d~~~~lL~llLTp 40 (103)
T COG2973 8 EQREQEWLAFVDLLKKAYQEDLHQPLLTLLLTP 40 (103)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHcCH
Confidence 456667888888888877777777777777765
No 420
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=28.34 E-value=1.2e+02 Score=17.19 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=34.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCC
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~ 104 (153)
++|-.++|..++..+... .||...-...-..+ |.-.|+...|.+.+..+..++
T Consensus 5 NHgL~~ea~aIL~alP~L--i~D~~~r~~c~all-lfGL~~~~~Al~~L~~~~~ee 57 (66)
T PF06287_consen 5 NHGLLKEARAILNALPQL--IPDEEDRAVCEALL-LFGLGEQAAALQLLADSDSEE 57 (66)
T ss_pred ccccHHHHHHHHHhchhh--cCCHhHHHHHHHHH-HHHcCChHHHHHHHhCCChHH
Confidence 457778888888888664 35444333332222 577888888888888876554
No 421
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=28.01 E-value=90 Score=19.76 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=35.9
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHH
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 114 (153)
+|=.-.+.....+-.+|..+|++ .+.-.++--.+++.+|.=.|+..|+.+...
T Consensus 60 LWI~RINAA~R~~GlsYS~fi~g---LkkA~I~inRKvLadlAi~d~~aF~~lv~~ 112 (118)
T COG0292 60 LWIARINAAARENGLSYSRFING---LKKAGIEIDRKVLADLAINDPAAFAALVEK 112 (118)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHH---HHHcCchhhHHHHHHHHhcCHHHHHHHHHH
Confidence 33333444455666788888888 566667777778888777777777776654
No 422
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.88 E-value=1.4e+02 Score=17.82 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHh
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI 117 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 117 (153)
.+++.+.+.|+ .+..-+..+ .+...+.+.+.++++.+.+++...|.....++..
T Consensus 24 ~v~~~L~~~gv-lt~~~~~~I-----~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 24 ELLIHLLQKDI-LTDSMAESI-----MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred HHHHHHHHcCC-CCHHHHHHH-----HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 46666666665 222222221 1344566777788887777777777766666643
No 423
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=27.86 E-value=1.2e+02 Score=18.76 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 54 REALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 54 ~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+...+.-+.+...|.+|+.......++ .|......+.++...
T Consensus 4 e~V~~Aa~~L~~~G~~pT~~~Vr~~lG------~GS~~ti~~~l~~w~ 45 (120)
T PF11740_consen 4 EDVIEAADELLAAGKKPTVRAVRERLG------GGSMSTISKHLKEWR 45 (120)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHC------CCCHHHHHHHHHHHH
Confidence 445566777888888887666555553 567666666666663
No 424
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=27.36 E-value=67 Score=24.32 Aligned_cols=57 Identities=9% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC-----CCH-----------HHHHHHHHHHHhc----CChHHHHHHHHHHhhCC
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPE-----RDY-----------VLWTAMIDGYLRV----NRFREALTLFPEMQTSN 67 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~-----~~~-----------~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~ 67 (153)
++++.|.+.|.+++|.++....++ |+. .....|+..+.+. =.+..++.++...++.+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~ 187 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQMLSQLINQLRTPLKLPACIKTVGYLRRLP 187 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhc
Confidence 678999999999999999988752 222 2334444444432 23556666666666554
No 425
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=26.73 E-value=1.3e+02 Score=16.84 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=29.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g 88 (153)
+++.+.+.+.+-.+..+.+.+...|+..+..+..-.+++ ..+.|
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~--me~~G 46 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRA--MERDG 46 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHH--HHHCC
Confidence 455556666666677777777777777777777777776 35555
No 426
>cd08787 CARD_NOD2_1_CARD15 Caspase activation and recruitment domain of NOD2, repeat 1. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 1. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=26.69 E-value=1.5e+02 Score=17.64 Aligned_cols=33 Identities=6% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAM 43 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~l 43 (153)
.++..++..|..+.-..+++.+.+.+..+|-..
T Consensus 7 ~Ll~vL~~~gs~e~~esvLD~LLs~evlswEDY 39 (87)
T cd08787 7 ELLEVLCSGGSLEPFESVLDWLLSQEVLSWEDY 39 (87)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHhHhhHHHH
Confidence 445555555555555555555554444444443
No 427
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=26.25 E-value=48 Score=20.08 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
..|.+...+.....+.++...+--.. ......+..+++++ -+.|-.+++...|
T Consensus 49 ~~n~~~~~~~~~~~~~~~lG~~~~~E----~~~~~~~~~~~~~l--~r~g~~~~~~~yf 101 (106)
T PF14518_consen 49 LINLFLALCLHRSHYPEALGALLATE----SSVPQIYRRLIKGL--RRLGLDEEDLEYF 101 (106)
T ss_dssp HHHHHHHH--H-SSTHHHHHHHHHHH----THHHHHHHHHHHHH--HHTT--TTTTHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHh----hcChHHHHHHHHHH--HHcCCCccccchh
Confidence 34444444444556666666665433 23344577777773 6666444444444
No 428
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.85 E-value=4.5e+02 Score=22.97 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHH--HHHHHHHHHHhcC-----ChHHHHHHH---HHH-hhCCC---CCChhH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYV--LWTAMIDGYLRVN-----RFREALTLF---PEM-QTSNI---RPDEFT 74 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--~~~~li~~~~~~~-----~~~~a~~~~---~~m-~~~~~---~p~~~t 74 (153)
+....+-+-..|++++|..+++.....|.. +-|.+++--...- +-+.--++. .++ ...+. +....|
T Consensus 625 ~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t 704 (835)
T KOG2168|consen 625 ILEVASEADEDGLFEDAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKT 704 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 455566677789999999999999877643 4555555444321 222222222 222 22222 235567
Q ss_pred HHHHHHHH---HHhccCChHHHHHHHHhcc
Q 035927 75 IVRILTAY---MYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 75 ~~~li~~~---~~~~~g~~~~a~~~~~~m~ 101 (153)
++.++... .....|+++.|+.+.+.+.
T Consensus 705 ~~lLl~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 705 LSLLLDLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77776653 4468899999999999883
No 429
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.60 E-value=1.7e+02 Score=17.99 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=29.6
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHH
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a 93 (153)
+..+++.|.++|....+.|. ++...+..+..- +...++.+--
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gl-l~e~~~~fL~EL--Ly~I~R~DLL 77 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGR-CDETNFRQVLQL--LRIITRHDLL 77 (97)
T ss_pred hccCcCcHHHHHHHHHHcCC-CccchHHHHHHH--HHHHHHHHHH
Confidence 44778999999999999985 444455566665 4666666655
No 430
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.29 E-value=2e+02 Score=18.70 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=27.3
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh
Q 035927 42 AMIDGYLRV-NRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 42 ~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~ 90 (153)
.++..+... +..-.|.++++.+.+.+...+..|.=-.|+. +...|-+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~--L~e~Gli 68 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQ--FDDAGIV 68 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHH--HHHCCCE
Confidence 344444443 3455677777777777665666665555555 3666544
No 431
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.03 E-value=1.6e+02 Score=17.41 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHH
Q 035927 26 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 26 ~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a 93 (153)
..+++.+.+....+-.-.-.--+...+.++|..+++.+...| ...|..+..+ +-..|..+.|
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~a--L~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSA--LRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHH--HHhcCchHHH
Confidence 345556655555554444443445566788888888887765 3677777777 3666665554
No 432
>PF09119 SicP-binding: SicP binding; InterPro: IPR015203 Members of this family bind the chaperone SicP, which is required both to maintain the stability of SptP, as well as to ensure the eventual secretion of the protein. The domain is found in the Salmonella effector protein SptP, which interacts with SicP chaperone dimers mainly through four regions of its chaperone-binding domain. The structure of the SptP-SicP complex contains four molecules of SicP, aligned in a linear fashion and arranged in two sets of tightly bound homodimers that bind two SptP molecules. The SicP homodimers do not interact with each other, but are held together by a molecular interface formed between two SptP molecules. Each SptP molecule is wrapped around by three SicP chaperones (two chaperones from one homodimer and a third one from the opposite homodimer pair) []. ; GO: 0005615 extracellular space; PDB: 1JYO_F.
Probab=25.01 E-value=1.6e+02 Score=17.45 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=30.9
Q ss_pred ChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 035927 21 QVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70 (153)
Q Consensus 21 ~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 70 (153)
+.+...+.-+.....|..+....+.++...-..+.|.+++..+--+|-+|
T Consensus 21 N~~AVq~~~e~~~~~nqktL~vFl~ALa~~YGe~~a~~~~~~~~ls~~tP 70 (81)
T PF09119_consen 21 NTNAVQKYVENQRVENQKTLQVFLEALAERYGEETANKVLDKMDLSGGTP 70 (81)
T ss_dssp -HHHHHHHHHCS--S-HHHHHHHHHHHHHTTSCHHHHHHHHHHHH-----
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccCCCCC
Confidence 34455556666666788888888888888877888888888875444344
No 433
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=24.95 E-value=2.3e+02 Score=21.04 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=11.2
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
++++ .-.|+...|.++++.+..
T Consensus 206 l~da---i~~~~~~~A~~~l~~L~~ 227 (326)
T PRK07452 206 LADA---LLQGNTGKALALLDDLLD 227 (326)
T ss_pred HHHH---HHCCCHHHHHHHHHHHHH
Confidence 5554 444555555555555543
No 434
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.74 E-value=2.5e+02 Score=22.45 Aligned_cols=88 Identities=9% Similarity=0.069 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CC-CCChhHHHHHHHHHH
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NI-RPDEFTIVRILTAYM 83 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~-~p~~~t~~~li~~~~ 83 (153)
+..+.++...++++.....|.+-.- -...+.-.|++..+-.|+.....++++.|... |. +-..+||-.=. .
T Consensus 205 ~~ql~~~~s~~dp~~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGF---a 281 (525)
T KOG3677|consen 205 SIQLTASVSNKDPALVALIFGASQPYANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGF---A 281 (525)
T ss_pred HHHHHHHhcCCChhhhhhhhccccHHHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhH---H
Confidence 3344455555666555555544431 24556677788888889988888888888654 43 33666644322 3
Q ss_pred HhccCChHHHHHHHHhc
Q 035927 84 YCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m 100 (153)
|.-.|++.+|.++|-.+
T Consensus 282 yLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 282 YLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68889999999999887
No 435
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=24.58 E-value=1.1e+02 Score=15.63 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=6.6
Q ss_pred ChhHHHHHHHHHHHhccCChH
Q 035927 71 DEFTIVRILTAYMYCKCGDVE 91 (153)
Q Consensus 71 ~~~t~~~li~~~~~~~~g~~~ 91 (153)
|....+.+-.+ +..|+.+
T Consensus 31 d~~g~t~lh~A---~~~g~~~ 48 (54)
T PF13637_consen 31 DEDGRTPLHYA---AKNGNID 48 (54)
T ss_dssp -TTS--HHHHH---HHTT-HH
T ss_pred CCCCCCHHHHH---HHccCHH
Confidence 44444444444 4555443
No 436
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=24.13 E-value=2.9e+02 Score=20.19 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCC-----ChhHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRP-----DEFTIVRILTAY 82 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-----~~~t~~~li~~~ 82 (153)
|-.++-.|.|.=.+..=..+|+....| ..|+.-|.+.|+++.|-.++--+.+.+ ... +...-..++..
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~- 229 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVM- 229 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH-
Confidence 444555555555555555566655322 267788888999999999888886554 222 23344445555
Q ss_pred HHhccCChHHHHHHHHhccc
Q 035927 83 MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~ 102 (153)
....++|+-+.++.+-+..
T Consensus 230 -a~~~~~w~Lc~eL~RFL~~ 248 (258)
T PF07064_consen 230 -ALESGDWDLCFELVRFLKA 248 (258)
T ss_pred -HHhcccHHHHHHHHHHHHH
Confidence 3889999999999888854
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=24.11 E-value=2e+02 Score=18.25 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHH
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMI 112 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li 112 (153)
-++|..|.+-+.+.+- ..-...+|+...+.+.|++++|...=.....||.+.|-++-
T Consensus 22 H~EA~tIa~wL~~~~~---~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~ 78 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE---MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC 78 (116)
T ss_dssp HHHHHHHHHHHHHTTT---THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH
Confidence 4556666666655432 22333333333346666666663333333445666665543
No 438
>COG4496 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.06 E-value=1.7e+02 Score=17.72 Aligned_cols=34 Identities=3% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 035927 2 KNKDVISWTDIVSGYINRGQVDIARQYFAQMPER 35 (153)
Q Consensus 2 ~~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 35 (153)
++|-......+.++.....+.++...+|+.+--+
T Consensus 4 ~klr~~~Ld~l~dailtL~n~eecy~FfdDlcTi 37 (100)
T COG4496 4 EKLRGAALDELFDAILTLENLEECYAFFDDLCTI 37 (100)
T ss_pred cchhhHHHHHHHHHHHHhccHHHHHHHHHhhcCH
Confidence 4555556677777777778888888888766443
No 439
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=23.96 E-value=80 Score=20.05 Aligned_cols=24 Identities=17% Similarity=0.082 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHH
Q 035927 57 LTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 57 ~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
..+.++|...|.+||..=++..-+
T Consensus 55 ~lv~~EM~~RGY~~~~~W~d~~yR 78 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQWLDPNYR 78 (120)
T ss_pred HHHHHHHHHcCCCCChhhcCcccc
Confidence 367899999999999854444433
No 440
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=23.68 E-value=1.3e+02 Score=20.52 Aligned_cols=56 Identities=13% Similarity=0.059 Sum_probs=28.5
Q ss_pred HHHHHhCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 26 RQYFAQMPER--DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 26 ~~l~~~m~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
..+|+++++| +...|..++..+-....-++-..-+.++.+.=-+++..++..++..
T Consensus 80 K~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li~~Lp~~n~~~L~~l~~~ 137 (189)
T cd04393 80 RLFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLLQQLPPVNYSLLKFLCHF 137 (189)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4567788777 6677777777664442222222222333322113455555555554
No 441
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.65 E-value=2.4e+02 Score=23.48 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=7.9
Q ss_pred hccCChHHHHHHHHhc
Q 035927 85 CKCGDVEKAQRVLRKM 100 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m 100 (153)
.|.|.+.+|...+..+
T Consensus 511 FR~G~I~eah~~L~el 526 (595)
T PF05470_consen 511 FRAGLIKEAHQCLSEL 526 (595)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3455555555554444
No 442
>PHA02875 ankyrin repeat protein; Provisional
Probab=23.34 E-value=3.4e+02 Score=20.74 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh---HHHHHHHHHHHhcc
Q 035927 13 VSGYINRGQVDIARQYFAQMPERDYVL--WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF---TIVRILTAYMYCKC 87 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~li~~~~~~~~ 87 (153)
+...++.|+++-+..+++.=..++... ..+.+...++.|+.+ +.+.+.+.|..|+.. ..+.+..+ ++.
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A---~~~ 78 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA---VEE 78 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH---HHC
Q ss_pred CChHHHHHHHHh
Q 035927 88 GDVEKAQRVLRK 99 (153)
Q Consensus 88 g~~~~a~~~~~~ 99 (153)
|+.+.+..+++.
T Consensus 79 g~~~~v~~Ll~~ 90 (413)
T PHA02875 79 GDVKAVEELLDL 90 (413)
T ss_pred CCHHHHHHHHHc
No 443
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=23.21 E-value=1.8e+02 Score=17.41 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
..|..+++.+...++.+++..+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 29 (88)
T TIGR02531 3 ELLDELFDAILTLKNREECYRFFDDIA 29 (88)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 356667777777777777777776664
No 444
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=23.03 E-value=1.8e+02 Score=17.32 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=14.7
Q ss_pred cCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
..+.+.|.++++.+..++..+|....+++-
T Consensus 41 ~t~~~qa~~Lld~L~trG~~Af~~F~~aL~ 70 (86)
T cd08323 41 ATQKEKAVMLINMILTKDNHAYVSFYNALL 70 (86)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344455555555555555555544444443
No 445
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.95 E-value=3.7e+02 Score=21.01 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=40.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhH----HHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 44 IDGYLRVNRFREALTLFPEMQTSNIRPDEFT----IVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t----~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
...+.+.+++..|.++|+++.+....|+... +..+..+|.+=..-+.++|.+.++++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~ 198 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPL 198 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhcc
Confidence 3355678999999999999998866555443 334444434446778899999998653
No 446
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=22.93 E-value=4.2e+02 Score=21.59 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...|+.-|...|.+.+|.+..+++--| -...+-+++.+.-+.|+-+..++++++.-..|. +|-+.|=+++
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Confidence 456788888899999999999998877 567888999999888988888888877766654 7788888884
No 447
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.74 E-value=1.6e+02 Score=19.73 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
||.-.|...+.+|.-..+.+.|..+|.+++
T Consensus 37 ~~dw~Ya~~L~~Yf~~dD~dnARfLWKRIP 66 (197)
T KOG4414|consen 37 HDDWPYAIHLAGYFLHDDCDNARFLWKRIP 66 (197)
T ss_pred CCcchHHHHHHHHHHhccchhHHHHHHhCC
Confidence 455567888888888888888888888876
No 448
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.57 E-value=7.9e+02 Score=24.60 Aligned_cols=131 Identities=10% Similarity=0.083 Sum_probs=81.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQM----PER--DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m----~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
++-.+-.+++.+.+|...+++- .+. ...-|-.+...|..-++++....+...- .-+...++.++.-
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r-----~a~~sl~~qil~~--- 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARR-----FADPSLYQQILEH--- 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHh-----hcCccHHHHHHHH---
Confidence 3444667788889999999883 221 2334555555888889998888877641 1233455666654
Q ss_pred hccCChHHHHHHHHhcccC--C-hhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHH-HHHHhcCCchhHhhh
Q 035927 85 CKCGDVEKAQRVLRKMLRK--D-KFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGV-LSACTHNGNETFVIN 149 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~--~-~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~l-l~~~~~~g~~~~a~~ 149 (153)
...|+|+.|..-|+.+.+. + ...++-++..-...+..+ ...+....|+++ +.+-.+.+.+|....
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 8899999999999999764 2 445665554444443333 333444444444 344456666665443
No 449
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=22.54 E-value=3.8e+02 Score=21.64 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC-ChhhHHHHHHH
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-DKFTWTAMIVG 114 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~ 114 (153)
.++..+.+..++||...+..+... |.+.=-++.|-++|+-.... +...|.+.+..
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftl--yskslpldlacRIwDvy~rdgeeFlfr~~lgI 515 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTL--YSKSLPLDLACRIWDVYCRDGEEFLFRTALGI 515 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHH--HhccCChHHhhhhhheeeecchHHHHHHHHHH
Confidence 356667778899999999999987 68888888888888876543 34444444433
No 450
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=22.43 E-value=1.5e+02 Score=16.74 Aligned_cols=42 Identities=10% Similarity=0.193 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~ 98 (153)
.+.+.+++...... ..+..|...|+.+ +.+.|+-+.|..+-+
T Consensus 40 ~~~~~~~L~~W~~~--~~~~at~~~L~~a--L~~~~~~d~~~~i~~ 81 (83)
T PF00531_consen 40 REQTYEMLQRWRQR--EGPNATVDQLIQA--LRDIGRNDLAEKIEQ 81 (83)
T ss_dssp HHHHHHHHHHHHHH--HGSTSSHHHHHHH--HHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHH--HHHCCcHHHHHHHHh
Confidence 46666777777655 3456788888888 477777777666543
No 451
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=22.39 E-value=29 Score=28.18 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCh--hHHHHHHHHHHH
Q 035927 13 VSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLR--VNRFREALTLFPEMQTSNIRPDE--FTIVRILTAYMY 84 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~~~ 84 (153)
+.++.+.|+++.|..++.++.. +.....-.|+.+-.. .|+++.|++.+.........+.. ..+.....+ |
T Consensus 31 a~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a--~ 108 (536)
T PF04348_consen 31 ARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQA--Y 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHH--H
Confidence 3466677777777777777762 233444445554443 46777777777654333333322 122222222 4
Q ss_pred hccCChHHHHHHHHhc
Q 035927 85 CKCGDVEKAQRVLRKM 100 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m 100 (153)
...|++-+|.+.+-.+
T Consensus 109 ~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 109 EQQGDPLAAARERIAL 124 (536)
T ss_dssp ----------------
T ss_pred HhcCCHHHHHHHHHHH
Confidence 5556665555544443
No 452
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.08 E-value=5.5e+02 Score=22.62 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYV-LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
.+-+.||++|.+.++.++-.++.+........ -.-..+.-+-+.+-+++|.-+-..... .....++++ -
T Consensus 432 dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill-----e 501 (933)
T KOG2114|consen 432 DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL-----E 501 (933)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH-----H
Confidence 34566777777777777777777666521111 123344444444444544443333321 233344444 4
Q ss_pred ccCChHHHHHHHHhcc
Q 035927 86 KCGDVEKAQRVLRKML 101 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~ 101 (153)
..|++++|.+.+..++
T Consensus 502 ~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 502 DLHNYEEALRYISSLP 517 (933)
T ss_pred HhcCHHHHHHHHhcCC
Confidence 5788888888888884
No 453
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=21.99 E-value=2.4e+02 Score=19.39 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=38.5
Q ss_pred hccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC-CCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-TIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-.+.|..+.++|..+..+. +-.+..+....... |.+--..|..++..++.-.|..|+|.++.
T Consensus 75 vvdcSW~~~~~~f~~l~~~~----~R~LP~LvAaNPVNYGkp~kLss~EAlaAaLYI~G~~deA~~ll 138 (179)
T COG2042 75 VVDCSWNRVERVFKKLRGRE----HRRLPFLVAANPVNYGKPFKLSSAEALAAALYIVGFKDEASELL 138 (179)
T ss_pred EEEccHHHHHHHHHhcCccc----cccccHhhhcCCcccCCcchhchHHHHHHHHHHhCcHHHHHHHH
Confidence 34457888888888886541 11222222223333 44445567777777888888888887765
No 454
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.82 E-value=2e+02 Score=17.37 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+...|..-++..... ..+++ ++|+--+..|+..|...|.++++. +.-+=.++...++++.|..
T Consensus 9 ~~~~~k~~~~rk~~L-s~eE~-EL~ELa~~AGv~~dp~VFriildL--L~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVL-SAEEV-ELYELAQLAGVPMDPEVFRIILDL--LRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhcc-CHHHH-HHHHHHHHhCCCcChHHHHHHHHH--HHcCCCHHHHHHHHHHHHc
Confidence 344555555433222 23443 888888999999999999999997 2444457778888888843
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=3.8e+02 Score=20.77 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH----hhCCCCCChhHHHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEM----QTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~t~~~li~~~ 82 (153)
..+-.....||+.|+-+.|++.+..- .+.|.+.|+..+.+=+..+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglf 153 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLF 153 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Confidence 45667778899999999988877665 4558899998888887775
No 456
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=21.36 E-value=1.9e+02 Score=17.03 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=37.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCCh
Q 035927 48 LRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105 (153)
Q Consensus 48 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~ 105 (153)
+++|-.++|.+++..+... .||...-...-... |.-.|+-.+|.+.+..+..+..
T Consensus 17 vNH~L~~ea~ailnalP~l--i~D~~~r~vcea~l-lfGL~~~~~A~~~L~~~~~~eA 71 (79)
T TIGR02498 17 VNHSLPKEAHSILNALPQI--IPDKKDRLVCEAIL-LFGLNHKNDAVKLLENMDDEEA 71 (79)
T ss_pred HccCcHHHHHHHHHhcccc--cCCHhHHHHHHHHH-HHhcCcHHHHHHHHhcCCcHHH
Confidence 4677888898888888653 46554443333332 6778888999999888766543
No 457
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.15 E-value=3.7e+02 Score=20.32 Aligned_cols=104 Identities=15% Similarity=0.236 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH---HHhccCChHHHH-HHHHhcc---cC------Ch
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---MYCKCGDVEKAQ-RVLRKML---RK------DK 105 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~---~~~~~g~~~~a~-~~~~~m~---~~------~~ 105 (153)
.|..=|..|....+-.+-..++++...-.-...+.....+|+.| +..+.|++++|. ..|+..+ +. +.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttC 272 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTC 272 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHH
Confidence 46666777776666666777777765433223345566778887 667888888764 4444443 22 34
Q ss_pred hhHHHHHHHHHhcC--CCC-------CCCCCHhHHHHHHHHHhcCC
Q 035927 106 FTWTAMIVGLAISD--PFP-------TIRPDEVTYVGVLSACTHNG 142 (153)
Q Consensus 106 ~~~~~li~~~~~~~--~~~-------~~~p~~~t~~~ll~~~~~~g 142 (153)
.-|-.+.+.+.+.+ .|+ .-.|.......++.+|-+..
T Consensus 273 LKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 273 LKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred HHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhccc
Confidence 45666666676664 344 23366677888999887654
No 458
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=21.03 E-value=3.3e+02 Score=19.72 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
=|.+++-+.+.|+++.+..+-..+.. .|...-+.++.-+-+.|.+.--.++++...
T Consensus 69 eNdIl~rf~ktG~yelsekvaaT~spamDIlvssN~ER~lwlla~~d~qi~~~l~nefe~~~~~qv~kel~ekls 143 (266)
T KOG2616|consen 69 ENDILHRFVKTGDYELSEKVAATLSPAMDILVSSNFERVLWLLAGSDSQITRALMNEFERTGSVQVPKELHEKLS 143 (266)
T ss_pred ccHHHHHHHHcCchhhhHHHHhhcCcchhhcccccHHHHHHHHhCChHHHHHHHHHHHhhCCceecCHHHHHHHH
Confidence 47899999999999999877765542 244555666666666665543334444443
No 459
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=21.01 E-value=1.3e+02 Score=16.46 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP 70 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 70 (153)
|+.....+...+- ...+...++|+.|.++|.-|
T Consensus 29 np~lR~~l~~~~~--~~~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 29 NPELRQILQQILN--ECQQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCcC
Confidence 4444555555332 23567789999999999754
No 460
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=20.87 E-value=3e+02 Score=19.11 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
........++..|.+.|+.+..+++.-++.
T Consensus 20 lpp~v~k~lv~~y~~~~~~~~lE~lI~~LD 49 (196)
T PF12816_consen 20 LPPEVFKALVEHYASKGRLERLEQLILHLD 49 (196)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 344677888888888888888888887775
No 461
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.62 E-value=4.3e+02 Score=20.79 Aligned_cols=109 Identities=11% Similarity=0.093 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHH--H--HHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMI--D--GYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li--~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
.+++.++...+..++..+++.... .+...+...- . +....+....-...+....+.|.-.|...+...++.+ .
T Consensus 121 Gaivaa~~a~~~~~e~~~~l~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~G~l~D~~~l~~~lr~~--l 197 (391)
T cd07229 121 GALIAALVGVHTDEELLRFLDGDG-IDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLLREGYFLDVKVLEEFVRAN--L 197 (391)
T ss_pred HHHHHHHHHcCCHHHHHHHHhccc-hhhhhhhhhccccccccccccccchHHHHHHHHHcCCCcccHHHHHHHHHHH--c
Confidence 355555555566666666665421 1111111100 0 0011112223334445555667667777777777763 4
Q ss_pred ccCChHHHHHH--------------------HHhcccCChhhHHHHHHHHHhcCCC
Q 035927 86 KCGDVEKAQRV--------------------LRKMLRKDKFTWTAMIVGLAISDPF 121 (153)
Q Consensus 86 ~~g~~~~a~~~--------------------~~~m~~~~~~~~~~li~~~~~~~~~ 121 (153)
..-.+++|.+- +..+-.||+..|.+....++.-+.+
T Consensus 198 gd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~ 253 (391)
T cd07229 198 GDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAAL 253 (391)
T ss_pred CCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcccc
Confidence 44556666643 3333456777777777776665444
No 462
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=20.37 E-value=1e+02 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=20.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHH
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIV 76 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 76 (153)
=.|+.+.|..+++.++..|+.|-...|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 3588999999999999999888766554
No 463
>PF06169 DUF982: Protein of unknown function (DUF982); InterPro: IPR010385 This family consists of several hypothetical proteins from Rhizobium meliloti (Sinorhizobium meliloti), Rhizobium loti (Mesorhizobium loti) and Agrobacterium tumefaciens. The function of this family is unknown.; PDB: 2KPQ_A.
Probab=20.34 E-value=1.9e+02 Score=16.60 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=24.3
Q ss_pred hHHHHHHH-HhCCCCCHHHHHHHHHHHHhc--C--ChHHHHHHHHHH
Q 035927 22 VDIARQYF-AQMPERDYVLWTAMIDGYLRV--N--RFREALTLFPEM 63 (153)
Q Consensus 22 ~~~a~~l~-~~m~~~~~~~~~~li~~~~~~--~--~~~~a~~~~~~m 63 (153)
+.+|.+++ ++.+..+...|...+++|... | ..+.|..-|-..
T Consensus 20 ~~~A~~~L~~~WP~~~g~~y~~A~~aC~~Al~g~~~~e~AR~AFi~A 66 (76)
T PF06169_consen 20 VRDAADFLLDEWPVRRGPAYRAALRACRAALDGRKPPEDARRAFIAA 66 (76)
T ss_dssp HHHHHHHHHH--S---SHHHHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45666666 777666677777777777653 3 467777766665
No 464
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.30 E-value=3.3e+02 Score=19.38 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=36.8
Q ss_pred HhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC--CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP--TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|-+.-+|.++.++++.|-+-.+. |. .+ .|++. +..|--...|....-+.++|.+|.|+.+++
T Consensus 142 Yhk~~qW~KGrkvLd~l~el~i~-ft-~L-----KGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 142 YHKTLQWSKGRKVLDKLHELQIH-FT-SL-----KGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hh-hc-----cCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 45666677777777776432100 00 00 02222 233444667788888999999999998764
No 465
>smart00031 DED Death effector domain.
Probab=20.28 E-value=1.9e+02 Score=16.65 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
.+.+.++|..|.+.|. .+......+... +...|+.+-+..++
T Consensus 37 ~~~~ldlf~~Le~~~~-l~~~nl~~L~el--L~~i~R~DLl~~i~ 78 (79)
T smart00031 37 IKTFLDLFSALEEQGL-LSEDNLSLLAEL--LYRLRRLDLLRRLF 78 (79)
T ss_pred cCCHHHHHHHHHHcCC-CCCccHHHHHHH--HHHcCHHHHHHHhc
Confidence 5788999999998874 222334444444 35667766665543
No 466
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=20.17 E-value=1.8e+02 Score=16.90 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCCCh
Q 035927 39 LWTAMIDGYLRVNR---FREALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 39 ~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~ 72 (153)
.|-.+++.|..+++ +-.|.++=+++.+.++.|-.
T Consensus 3 ~Y~~lL~~yl~~~~E~~L~~~~~~~r~~i~~~I~PEe 39 (77)
T PF08673_consen 3 QYKDLLREYLETQDEQSLYQAQEFGRELIEKDISPEE 39 (77)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT--HHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence 47788888888765 44777888888888888743
No 467
>KOG1874 consensus KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin4 [Transcription]
Probab=20.00 E-value=2.2e+02 Score=26.10 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYL 48 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~ 48 (153)
+|..... |+.++...|++..|..++++++..+.+.-..+-.+++
T Consensus 255 ~dnq~lG-Lle~lL~~gdw~~A~~l~dr~p~~~~vs~~~isr~l~ 298 (1477)
T KOG1874|consen 255 RDNQKLG-LLEGLLIHGDWRHAQDLRDRLPPYYAVSHSLISRALC 298 (1477)
T ss_pred cchhhhh-hHHHhhhcccHHHHHHHHHhccccchhhhhHHHHHHH
Confidence 4444555 7888999999999999999998766665555444444
Done!