Query 035927
Match_columns 153
No_of_seqs 108 out of 1441
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 12:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7.4E-31 2.5E-35 203.2 14.1 145 6-152 26-199 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.4E-28 8.3E-33 189.1 13.7 139 3-143 58-225 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 6.6E-25 2.3E-29 178.1 8.3 110 6-117 127-248 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-19 4.8E-24 147.2 9.0 112 37-150 127-258 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 2.1E-14 7.1E-19 111.6 14.2 146 4-152 371-540 (597)
6 2xpi_A Anaphase-promoting comp 99.6 2.5E-14 8.6E-19 111.1 10.7 116 4-122 303-424 (597)
7 1b89_A Protein (clathrin heavy 99.2 5.4E-11 1.8E-15 90.3 7.2 131 6-152 94-231 (449)
8 2ho1_A Type 4 fimbrial biogene 99.1 2.9E-09 1E-13 73.9 14.7 145 5-151 70-232 (252)
9 2y4t_A DNAJ homolog subfamily 99.1 1.1E-09 3.6E-14 82.2 13.1 94 5-101 25-121 (450)
10 1w3b_A UDP-N-acetylglucosamine 99.1 1.7E-09 6E-14 79.9 13.7 141 9-152 206-363 (388)
11 1w3b_A UDP-N-acetylglucosamine 99.1 3.3E-09 1.1E-13 78.4 13.6 143 8-152 137-329 (388)
12 2q7f_A YRRB protein; TPR, prot 99.1 6.9E-09 2.4E-13 71.4 14.1 146 4-152 55-217 (243)
13 2vq2_A PILW, putative fimbrial 99.1 5.8E-09 2E-13 70.8 13.4 144 5-151 7-170 (225)
14 3as5_A MAMA; tetratricopeptide 99.1 6.8E-09 2.3E-13 68.2 13.3 144 6-152 8-168 (186)
15 2y4t_A DNAJ homolog subfamily 99.1 3.7E-09 1.3E-13 79.3 13.2 148 3-152 57-235 (450)
16 2fo7_A Synthetic consensus TPR 99.1 5.7E-09 1.9E-13 64.9 12.0 123 7-152 2-127 (136)
17 1b89_A Protein (clathrin heavy 99.1 4.9E-11 1.7E-15 90.6 2.6 134 7-150 33-199 (449)
18 3mkr_A Coatomer subunit epsilo 99.1 3.9E-09 1.3E-13 76.1 12.4 140 4-152 63-224 (291)
19 2pl2_A Hypothetical conserved 99.0 2.6E-09 9E-14 73.6 11.0 143 4-150 3-173 (217)
20 3vtx_A MAMA; tetratricopeptide 99.0 7.6E-09 2.6E-13 68.8 12.6 145 5-152 4-165 (184)
21 2vq2_A PILW, putative fimbrial 99.0 1.2E-08 4E-13 69.2 13.5 147 4-152 40-206 (225)
22 4eqf_A PEX5-related protein; a 99.0 9.5E-09 3.2E-13 75.2 12.7 61 5-65 98-161 (365)
23 2ho1_A Type 4 fimbrial biogene 99.0 1.3E-08 4.3E-13 70.7 12.4 144 6-152 37-199 (252)
24 4eqf_A PEX5-related protein; a 99.0 3.8E-09 1.3E-13 77.3 9.9 92 6-100 65-159 (365)
25 3mkr_A Coatomer subunit epsilo 98.9 3.3E-08 1.1E-12 71.2 13.4 141 5-151 100-258 (291)
26 2pl2_A Hypothetical conserved 98.9 2.6E-08 8.7E-13 68.6 12.0 146 3-152 36-209 (217)
27 3hym_B Cell division cycle pro 98.9 5.1E-08 1.8E-12 69.7 13.7 143 6-151 90-259 (330)
28 1fch_A Peroxisomal targeting s 98.9 5.4E-08 1.8E-12 70.9 13.9 145 5-151 97-308 (368)
29 3hym_B Cell division cycle pro 98.9 3.9E-08 1.3E-12 70.4 12.8 146 4-152 123-294 (330)
30 3uq3_A Heat shock protein STI1 98.9 2E-08 6.8E-13 69.5 10.7 147 4-152 36-231 (258)
31 1fch_A Peroxisomal targeting s 98.9 5.5E-08 1.9E-12 70.9 13.5 94 5-101 63-159 (368)
32 2q7f_A YRRB protein; TPR, prot 98.9 6.8E-09 2.3E-13 71.4 7.2 147 3-152 20-183 (243)
33 3cv0_A Peroxisome targeting si 98.8 2.1E-07 7E-12 66.5 13.8 145 5-151 54-263 (327)
34 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2E-07 6.7E-12 63.1 13.0 140 5-152 5-145 (213)
35 4gyw_A UDP-N-acetylglucosamine 98.8 4.6E-08 1.6E-12 78.8 11.0 144 5-152 8-169 (723)
36 3uq3_A Heat shock protein STI1 98.8 7.4E-08 2.5E-12 66.6 10.7 145 6-152 5-197 (258)
37 3cv0_A Peroxisome targeting si 98.8 1.5E-07 5.2E-12 67.2 12.6 134 16-152 148-310 (327)
38 2gw1_A Mitochondrial precursor 98.8 7.6E-08 2.6E-12 73.0 10.8 64 4-67 37-103 (514)
39 3ieg_A DNAJ homolog subfamily 98.7 3.1E-07 1.1E-11 66.2 13.1 145 4-152 35-212 (359)
40 4abn_A Tetratricopeptide repea 98.7 5E-08 1.7E-12 74.8 9.1 145 4-152 100-282 (474)
41 2ond_A Cleavage stimulation fa 98.7 4E-07 1.4E-11 65.7 13.2 147 4-152 97-265 (308)
42 3u4t_A TPR repeat-containing p 98.7 3.7E-07 1.3E-11 63.8 12.1 142 8-151 5-165 (272)
43 3ieg_A DNAJ homolog subfamily 98.7 3.1E-07 1.1E-11 66.2 12.0 145 5-152 2-178 (359)
44 1xnf_A Lipoprotein NLPI; TPR, 98.7 1.4E-07 4.7E-12 66.0 9.0 143 5-151 42-200 (275)
45 4i17_A Hypothetical protein; T 98.6 8.9E-07 3E-11 60.7 12.4 137 4-144 5-169 (228)
46 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4E-11 53.6 11.8 94 6-102 9-105 (125)
47 1xnf_A Lipoprotein NLPI; TPR, 98.6 3.5E-07 1.2E-11 63.9 10.1 144 4-152 75-239 (275)
48 2gw1_A Mitochondrial precursor 98.6 3.9E-07 1.3E-11 69.1 10.7 81 38-122 238-321 (514)
49 3nf1_A KLC 1, kinesin light ch 98.6 2.3E-07 7.8E-12 65.8 8.8 146 5-152 26-219 (311)
50 3fp2_A TPR repeat-containing p 98.6 4.5E-07 1.5E-11 69.3 11.0 142 8-152 245-402 (537)
51 3edt_B KLC 2, kinesin light ch 98.6 1.6E-07 5.6E-12 65.5 6.8 25 128-152 252-276 (283)
52 1ouv_A Conserved hypothetical 98.5 3.9E-06 1.3E-10 59.0 13.9 108 5-117 5-122 (273)
53 3nf1_A KLC 1, kinesin light ch 98.5 2.4E-07 8.3E-12 65.6 7.0 145 6-152 111-302 (311)
54 3u4t_A TPR repeat-containing p 98.5 3.6E-06 1.2E-10 58.7 12.7 24 129-152 222-245 (272)
55 3fp2_A TPR repeat-containing p 98.5 1.2E-06 4.2E-11 66.8 11.1 145 5-152 309-486 (537)
56 3as5_A MAMA; tetratricopeptide 98.5 2.5E-06 8.5E-11 55.6 11.0 116 4-122 40-161 (186)
57 2vyi_A SGTA protein; chaperone 98.5 4E-06 1.4E-10 51.5 11.2 114 4-120 10-129 (131)
58 2lni_A Stress-induced-phosphop 98.5 4.3E-06 1.5E-10 51.8 11.3 110 3-115 13-128 (133)
59 2fo7_A Synthetic consensus TPR 98.5 3.6E-06 1.2E-10 51.8 10.9 96 4-102 33-131 (136)
60 3urz_A Uncharacterized protein 98.5 1.3E-06 4.3E-11 59.6 9.1 141 8-152 6-181 (208)
61 1a17_A Serine/threonine protei 98.5 3.1E-06 1.1E-10 54.5 10.5 123 6-151 13-140 (166)
62 2r5s_A Uncharacterized protein 98.4 2.2E-06 7.6E-11 56.7 9.1 142 8-152 8-168 (176)
63 4abn_A Tetratricopeptide repea 98.4 1.6E-06 5.5E-11 66.4 9.3 146 4-152 135-316 (474)
64 2ond_A Cleavage stimulation fa 98.4 8.1E-06 2.8E-10 58.7 12.4 145 4-152 48-227 (308)
65 1ouv_A Conserved hypothetical 98.4 1.4E-05 4.6E-10 56.2 13.0 106 7-117 39-158 (273)
66 3gyz_A Chaperone protein IPGC; 98.4 3.4E-06 1.2E-10 55.0 9.0 94 5-102 35-132 (151)
67 2kck_A TPR repeat; tetratricop 98.4 8.9E-06 3.1E-10 48.6 10.2 99 3-103 3-106 (112)
68 2h6f_A Protein farnesyltransfe 98.3 9.7E-06 3.3E-10 60.7 12.1 138 6-147 97-254 (382)
69 2ooe_A Cleavage stimulation fa 98.3 1.5E-05 5.1E-10 61.5 12.9 146 4-151 319-486 (530)
70 2pzi_A Probable serine/threoni 98.3 8.1E-06 2.8E-10 65.3 11.4 133 17-152 402-558 (681)
71 3qky_A Outer membrane assembly 98.3 1.5E-05 5E-10 55.7 11.5 148 3-152 12-219 (261)
72 2vsy_A XCC0866; transferase, g 98.3 1.4E-05 4.7E-10 62.3 12.3 124 5-151 22-151 (568)
73 4gco_A Protein STI-1; structur 98.3 1.8E-05 6.2E-10 49.7 10.6 94 6-102 13-109 (126)
74 2h6f_A Protein farnesyltransfe 98.3 1.1E-05 3.7E-10 60.4 10.9 145 4-151 129-299 (382)
75 3qou_A Protein YBBN; thioredox 98.3 3.4E-06 1.2E-10 60.4 7.9 144 6-152 117-279 (287)
76 3mv2_B Coatomer subunit epsilo 98.3 1.4E-05 4.9E-10 58.1 11.1 121 8-151 102-234 (310)
77 1xi4_A Clathrin heavy chain; a 98.3 2.9E-05 1E-09 66.3 14.3 58 6-65 1105-1162(1630)
78 1elw_A TPR1-domain of HOP; HOP 98.2 6E-05 2.1E-09 45.2 12.2 96 5-103 3-101 (118)
79 1na0_A Designed protein CTPR3; 98.2 1.5E-05 5E-10 48.5 9.2 92 37-151 9-100 (125)
80 4ga2_A E3 SUMO-protein ligase 98.2 7.6E-06 2.6E-10 52.9 8.1 102 17-122 8-116 (150)
81 3q49_B STIP1 homology and U bo 98.2 3.6E-05 1.2E-09 48.1 11.1 97 3-102 6-105 (137)
82 3vtx_A MAMA; tetratricopeptide 98.2 1.8E-05 6E-10 52.2 10.0 116 4-122 37-158 (184)
83 3gyz_A Chaperone protein IPGC; 98.2 6.8E-06 2.3E-10 53.6 7.5 115 8-152 11-128 (151)
84 2vgx_A Chaperone SYCD; alterna 98.2 1.5E-05 5.2E-10 51.4 9.1 94 5-102 20-117 (148)
85 2xcb_A PCRH, regulatory protei 98.2 1.7E-05 5.9E-10 50.5 9.2 94 5-102 17-114 (142)
86 3u3w_A Transcriptional activat 98.2 7.6E-05 2.6E-09 53.1 13.3 142 9-152 78-261 (293)
87 2yhc_A BAMD, UPF0169 lipoprote 98.2 4.2E-05 1.4E-09 52.4 11.2 143 6-152 4-208 (225)
88 3gw4_A Uncharacterized protein 98.1 2.1E-05 7.1E-10 52.3 9.3 130 6-152 26-171 (203)
89 3sz7_A HSC70 cochaperone (SGT) 98.1 3.1E-05 1.1E-09 50.3 9.9 96 4-102 9-107 (164)
90 3edt_B KLC 2, kinesin light ch 98.1 1.2E-05 4.1E-10 55.8 8.2 132 6-152 43-193 (283)
91 3upv_A Heat shock protein STI1 98.1 3.9E-05 1.3E-09 47.5 9.8 95 5-102 3-100 (126)
92 1elr_A TPR2A-domain of HOP; HO 98.1 3.5E-05 1.2E-09 47.2 9.4 95 6-102 4-107 (131)
93 2dba_A Smooth muscle cell asso 98.1 0.0001 3.5E-09 46.3 11.6 96 4-102 26-127 (148)
94 4gyw_A UDP-N-acetylglucosamine 98.1 7.3E-05 2.5E-09 60.3 12.8 114 5-122 42-162 (723)
95 1hh8_A P67PHOX, NCF-2, neutrop 98.1 5.4E-05 1.8E-09 50.9 10.5 117 3-121 34-172 (213)
96 2ooe_A Cleavage stimulation fa 98.1 8.3E-05 2.8E-09 57.3 12.6 144 5-152 271-449 (530)
97 4i17_A Hypothetical protein; T 98.1 6.2E-05 2.1E-09 51.3 10.5 115 36-152 6-141 (228)
98 1p5q_A FKBP52, FK506-binding p 98.0 4.8E-05 1.6E-09 55.6 10.2 120 5-147 146-283 (336)
99 2kck_A TPR repeat; tetratricop 98.0 5.7E-05 1.9E-09 45.0 8.9 96 36-152 5-101 (112)
100 4gco_A Protein STI-1; structur 98.0 7.6E-05 2.6E-09 46.8 9.6 93 37-152 13-105 (126)
101 3ulq_A Response regulator aspa 98.0 2.6E-05 8.9E-10 57.5 8.4 144 7-152 185-363 (383)
102 1qqe_A Vesicular transport pro 98.0 4.7E-05 1.6E-09 54.4 9.5 144 7-152 38-223 (292)
103 3sf4_A G-protein-signaling mod 98.0 2.5E-05 8.5E-10 57.2 7.9 114 5-120 8-142 (406)
104 4ga2_A E3 SUMO-protein ligase 98.0 0.00012 4.1E-09 47.1 10.1 103 7-113 32-142 (150)
105 2lni_A Stress-induced-phosphop 98.0 0.00011 3.6E-09 45.2 9.4 93 36-151 15-107 (133)
106 2pzi_A Probable serine/threoni 98.0 5.2E-05 1.8E-09 60.6 9.7 135 4-143 431-583 (681)
107 1qqe_A Vesicular transport pro 97.9 0.00034 1.2E-08 49.8 13.0 95 7-103 118-228 (292)
108 2xcb_A PCRH, regulatory protei 97.9 7.7E-05 2.6E-09 47.4 8.6 93 36-152 17-110 (142)
109 2vgx_A Chaperone SYCD; alterna 97.9 7.6E-05 2.6E-09 48.1 8.6 93 36-151 20-112 (148)
110 2qfc_A PLCR protein; TPR, HTH, 97.9 6.8E-05 2.3E-09 53.4 9.0 142 8-151 77-260 (293)
111 2vsy_A XCC0866; transferase, g 97.9 7.5E-05 2.6E-09 58.1 9.8 111 19-152 2-115 (568)
112 1hxi_A PEX5, peroxisome target 97.9 6.1E-05 2.1E-09 46.8 7.7 93 7-103 18-114 (121)
113 2e2e_A Formate-dependent nitri 97.9 0.00046 1.6E-08 45.0 12.3 96 4-102 42-143 (177)
114 2e2e_A Formate-dependent nitri 97.9 2.9E-05 1E-09 50.9 6.4 113 17-151 21-138 (177)
115 3mv2_B Coatomer subunit epsilo 97.9 0.00011 3.7E-09 53.5 9.8 94 5-102 135-239 (310)
116 3ulq_A Response regulator aspa 97.9 0.00014 4.7E-09 53.6 10.6 139 12-152 109-288 (383)
117 3q49_B STIP1 homology and U bo 97.9 0.00017 6E-09 44.8 9.7 95 34-151 6-100 (137)
118 3upv_A Heat shock protein STI1 97.9 0.00015 5E-09 44.8 9.2 93 37-152 4-96 (126)
119 4a1s_A PINS, partner of inscut 97.9 2.6E-05 8.9E-10 57.5 6.6 110 9-120 51-181 (411)
120 1xi4_A Clathrin heavy chain; a 97.9 0.00023 7.8E-09 61.1 12.6 133 12-152 1055-1219(1630)
121 1wao_1 Serine/threonine protei 97.9 6.3E-05 2.2E-09 57.7 8.4 120 9-152 9-134 (477)
122 1elw_A TPR1-domain of HOP; HOP 97.8 0.0002 6.7E-09 42.9 9.0 93 36-151 3-95 (118)
123 4a1s_A PINS, partner of inscut 97.8 3.1E-05 1E-09 57.2 6.2 24 9-32 129-152 (411)
124 1elr_A TPR2A-domain of HOP; HO 97.8 9.6E-05 3.3E-09 45.2 7.6 96 37-152 4-103 (131)
125 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00015 5.2E-09 46.9 8.9 92 36-151 10-102 (164)
126 3q15_A PSP28, response regulat 97.8 0.00016 5.3E-09 53.3 9.7 137 14-152 109-285 (378)
127 3ro3_A PINS homolog, G-protein 97.8 9.9E-05 3.4E-09 46.6 7.6 129 7-152 10-153 (164)
128 3ro2_A PINS homolog, G-protein 97.8 5.2E-05 1.8E-09 53.7 6.9 53 11-63 10-69 (338)
129 3rjv_A Putative SEL1 repeat pr 97.8 0.00073 2.5E-08 45.9 12.4 143 4-152 16-192 (212)
130 3q15_A PSP28, response regulat 97.8 0.00012 4.2E-09 53.8 9.0 145 6-152 182-360 (378)
131 3ro2_A PINS homolog, G-protein 97.8 2.4E-05 8.1E-10 55.5 5.0 68 84-151 193-286 (338)
132 4gcn_A Protein STI-1; structur 97.8 0.00021 7E-09 44.7 8.9 94 7-102 9-111 (127)
133 2vyi_A SGTA protein; chaperone 97.8 0.00026 8.9E-09 43.1 9.2 84 36-122 11-97 (131)
134 2ifu_A Gamma-SNAP; membrane fu 97.8 8.9E-05 3E-09 53.3 7.9 142 8-152 38-219 (307)
135 4f3v_A ESX-1 secretion system 97.8 0.00033 1.1E-08 50.3 10.5 121 9-152 105-232 (282)
136 3sf4_A G-protein-signaling mod 97.8 4.6E-05 1.6E-09 55.8 6.2 21 130-150 269-289 (406)
137 2xev_A YBGF; tetratricopeptide 97.8 0.0003 1E-08 43.2 9.1 90 9-102 5-104 (129)
138 2c2l_A CHIP, carboxy terminus 97.8 0.00056 1.9E-08 48.6 11.5 96 4-102 2-100 (281)
139 2dba_A Smooth muscle cell asso 97.8 0.00049 1.7E-08 43.0 10.1 92 36-151 27-122 (148)
140 4gcn_A Protein STI-1; structur 97.7 0.00015 5.1E-09 45.4 7.2 95 37-152 8-107 (127)
141 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00041 1.4E-08 46.3 9.6 93 7-102 39-150 (198)
142 2l6j_A TPR repeat-containing p 97.7 0.00031 1E-08 41.9 8.0 62 38-102 5-66 (111)
143 2xev_A YBGF; tetratricopeptide 97.6 0.00048 1.6E-08 42.3 8.6 87 41-152 6-100 (129)
144 1hxi_A PEX5, peroxisome target 97.6 0.00029 9.9E-09 43.7 7.5 89 39-152 19-109 (121)
145 4g1t_A Interferon-induced prot 97.6 0.002 6.7E-08 48.3 13.4 109 6-114 51-181 (472)
146 1a17_A Serine/threonine protei 97.6 0.00077 2.6E-08 43.0 9.7 97 4-101 45-144 (166)
147 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0009 3.1E-08 51.0 11.4 94 7-103 269-380 (457)
148 2l6j_A TPR repeat-containing p 97.6 0.0001 3.5E-09 44.1 4.9 93 4-100 2-104 (111)
149 2r5s_A Uncharacterized protein 97.6 0.0022 7.4E-08 42.0 11.7 114 4-122 38-161 (176)
150 1ihg_A Cyclophilin 40; ppiase 97.6 0.00077 2.6E-08 50.0 10.4 117 8-148 225-361 (370)
151 3qou_A Protein YBBN; thioredox 97.5 0.0021 7.1E-08 45.7 11.8 116 4-122 149-272 (287)
152 2fbn_A 70 kDa peptidylprolyl i 97.5 0.00014 4.7E-09 48.7 5.3 137 10-148 8-176 (198)
153 2c2l_A CHIP, carboxy terminus 97.5 0.0013 4.5E-08 46.7 10.7 92 36-151 3-95 (281)
154 3rkv_A Putative peptidylprolyl 97.5 0.0014 4.7E-08 42.2 9.9 95 6-103 11-126 (162)
155 1hz4_A MALT regulatory protein 97.5 0.0012 4.1E-08 48.1 10.5 143 7-151 136-316 (373)
156 4g1t_A Interferon-induced prot 97.5 0.00045 1.5E-08 51.9 8.0 27 126-152 428-454 (472)
157 3u3w_A Transcriptional activat 97.5 0.0025 8.5E-08 45.2 11.4 112 40-152 78-220 (293)
158 3k9i_A BH0479 protein; putativ 97.4 0.00029 1E-08 43.0 5.4 81 18-102 2-89 (117)
159 3n71_A Histone lysine methyltr 97.4 0.0006 2E-08 52.7 8.0 122 15-151 318-458 (490)
160 3qky_A Outer membrane assembly 97.4 0.00042 1.4E-08 48.2 6.1 110 6-118 52-198 (261)
161 2xm6_A Protein corresponding t 97.3 0.0078 2.7E-07 45.8 13.5 14 87-100 200-213 (490)
162 3rkv_A Putative peptidylprolyl 97.3 0.00074 2.5E-08 43.5 6.8 84 37-122 11-114 (162)
163 4f3v_A ESX-1 secretion system 97.3 0.0081 2.8E-07 43.1 12.6 99 4-102 133-236 (282)
164 1p5q_A FKBP52, FK506-binding p 97.3 0.0017 5.7E-08 47.4 9.1 95 36-152 146-254 (336)
165 2xm6_A Protein corresponding t 97.3 0.011 3.8E-07 44.9 13.9 108 5-117 38-159 (490)
166 3k9i_A BH0479 protein; putativ 97.3 0.00013 4.5E-09 44.7 2.6 80 49-151 2-84 (117)
167 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0018 6.2E-08 47.3 8.8 94 7-103 180-293 (338)
168 1hz4_A MALT regulatory protein 97.2 0.0028 9.6E-08 46.1 9.7 125 8-151 55-197 (373)
169 1na3_A Designed protein CTPR2; 97.2 0.0035 1.2E-07 35.7 8.4 57 8-64 11-70 (91)
170 3gw4_A Uncharacterized protein 97.2 0.0013 4.4E-08 43.4 7.0 105 16-122 2-124 (203)
171 4e6h_A MRNA 3'-END-processing 97.2 0.0037 1.3E-07 50.2 10.5 145 4-151 376-564 (679)
172 2ifu_A Gamma-SNAP; membrane fu 97.2 0.0042 1.4E-07 44.4 10.0 94 6-102 76-183 (307)
173 2hr2_A Hypothetical protein; a 97.2 0.0031 1.1E-07 41.4 8.4 94 7-102 12-130 (159)
174 3urz_A Uncharacterized protein 97.2 0.0072 2.5E-07 40.7 10.5 93 12-108 60-158 (208)
175 3rjv_A Putative SEL1 repeat pr 97.1 0.0034 1.2E-07 42.5 8.6 122 25-152 5-153 (212)
176 3ma5_A Tetratricopeptide repea 97.0 0.0038 1.3E-07 37.0 7.2 62 36-101 6-68 (100)
177 4b4t_Q 26S proteasome regulato 97.0 0.012 4.2E-07 43.5 11.1 127 8-151 57-198 (434)
178 1na3_A Designed protein CTPR2; 97.0 0.011 3.7E-07 33.5 8.7 77 36-115 8-87 (91)
179 3ro3_A PINS homolog, G-protein 96.9 0.0061 2.1E-07 38.0 7.8 93 7-101 50-156 (164)
180 3ma5_A Tetratricopeptide repea 96.9 0.008 2.7E-07 35.5 7.8 78 4-81 5-86 (100)
181 3n71_A Histone lysine methyltr 96.9 0.0023 7.8E-08 49.4 6.4 95 7-102 352-463 (490)
182 2qfc_A PLCR protein; TPR, HTH, 96.9 0.0043 1.5E-07 43.9 7.5 114 7-122 116-253 (293)
183 1kt0_A FKBP51, 51 kDa FK506-bi 96.8 0.0082 2.8E-07 45.6 8.7 109 36-148 267-405 (457)
184 2kat_A Uncharacterized protein 96.7 0.0097 3.3E-07 35.7 7.5 75 25-102 4-81 (115)
185 2kat_A Uncharacterized protein 96.7 0.0068 2.3E-07 36.5 6.8 63 4-66 17-82 (115)
186 3qwp_A SET and MYND domain-con 96.7 0.0073 2.5E-07 45.8 8.3 89 12-102 293-399 (429)
187 1ihg_A Cyclophilin 40; ppiase 96.7 0.0097 3.3E-07 44.1 8.7 93 38-152 224-331 (370)
188 3dra_A Protein farnesyltransfe 96.7 0.085 2.9E-06 38.1 13.4 145 5-152 102-282 (306)
189 2hr2_A Hypothetical protein; a 96.7 0.017 5.9E-07 37.8 8.6 99 38-152 12-126 (159)
190 1wao_1 Serine/threonine protei 96.6 0.0049 1.7E-07 47.2 6.5 93 4-98 38-134 (477)
191 2yhc_A BAMD, UPF0169 lipoprote 96.5 0.016 5.6E-07 39.3 7.9 64 37-102 4-69 (225)
192 3qww_A SET and MYND domain-con 96.5 0.0061 2.1E-07 46.3 6.1 82 19-102 311-410 (433)
193 3e4b_A ALGK; tetratricopeptide 96.4 0.068 2.3E-06 40.4 11.7 105 7-116 177-294 (452)
194 2if4_A ATFKBP42; FKBP-like, al 96.4 0.013 4.5E-07 42.7 7.3 82 37-122 179-281 (338)
195 3qwp_A SET and MYND domain-con 96.0 0.029 9.9E-07 42.5 8.0 94 44-152 294-395 (429)
196 3e4b_A ALGK; tetratricopeptide 95.9 0.21 7.1E-06 37.7 12.4 141 7-152 142-311 (452)
197 4b4t_Q 26S proteasome regulato 95.7 0.015 5.1E-07 43.0 5.2 123 13-151 11-158 (434)
198 2kc7_A BFR218_protein; tetratr 95.7 0.039 1.3E-06 31.9 6.1 51 15-65 9-63 (99)
199 3qww_A SET and MYND domain-con 95.7 0.019 6.4E-07 43.6 5.6 71 7-77 341-425 (433)
200 1klx_A Cysteine rich protein B 95.2 0.16 5.3E-06 31.8 7.9 89 20-115 9-103 (138)
201 3mkq_A Coatomer beta'-subunit; 95.1 0.27 9.2E-06 39.3 10.7 78 9-102 632-709 (814)
202 2kc7_A BFR218_protein; tetratr 95.0 0.088 3E-06 30.3 6.0 57 43-103 6-64 (99)
203 3bee_A Putative YFRE protein; 94.6 0.3 1E-05 28.5 7.6 44 22-65 25-71 (93)
204 2uy1_A Cleavage stimulation fa 94.4 0.68 2.3E-05 35.5 11.1 107 7-119 287-398 (493)
205 4e6h_A MRNA 3'-END-processing 94.3 0.52 1.8E-05 37.9 10.5 113 7-122 435-558 (679)
206 1zu2_A Mitochondrial import re 94.3 0.068 2.3E-06 34.9 4.5 82 17-102 13-119 (158)
207 3bee_A Putative YFRE protein; 94.2 0.38 1.3E-05 28.1 7.4 65 36-103 5-72 (93)
208 3q7a_A Farnesyltransferase alp 94.1 1.3 4.4E-05 32.7 13.6 145 5-152 122-326 (349)
209 3mkq_A Coatomer beta'-subunit; 94.0 0.76 2.6E-05 36.7 11.0 50 13-64 659-708 (814)
210 2v5f_A Prolyl 4-hydroxylase su 93.7 0.58 2E-05 27.6 8.3 61 5-65 4-74 (104)
211 2ff4_A Probable regulatory pro 93.7 0.3 1E-05 36.4 7.7 71 10-80 175-253 (388)
212 3ly7_A Transcriptional activat 93.6 0.57 2E-05 34.8 8.8 63 36-102 276-338 (372)
213 3lvg_A Clathrin heavy chain 1; 93.0 0.0015 5E-08 50.6 -5.9 109 5-122 82-216 (624)
214 3ly7_A Transcriptional activat 92.7 0.69 2.4E-05 34.4 8.2 75 4-80 275-351 (372)
215 1zu2_A Mitochondrial import re 92.4 0.28 9.5E-06 32.0 5.1 76 4-81 34-133 (158)
216 3dra_A Protein farnesyltransfe 92.0 2.5 8.5E-05 30.4 11.5 136 8-146 69-238 (306)
217 1wy6_A Hypothetical protein ST 92.0 1.6 5.4E-05 28.1 8.4 82 18-103 73-154 (172)
218 1klx_A Cysteine rich protein B 91.7 1.5 5E-05 27.2 9.7 87 12-103 31-126 (138)
219 2uy1_A Cleavage stimulation fa 91.6 1.3 4.3E-05 34.0 8.8 60 40-102 289-348 (493)
220 1pc2_A Mitochondria fission pr 91.0 0.9 3.1E-05 29.3 6.3 77 23-103 15-100 (152)
221 1v54_E Cytochrome C oxidase po 90.9 1.2 4E-05 26.9 6.2 50 52-103 25-74 (109)
222 2v5f_A Prolyl 4-hydroxylase su 90.2 1.8 6.1E-05 25.4 7.6 64 37-102 5-74 (104)
223 3ffl_A Anaphase-promoting comp 89.4 3.2 0.00011 27.2 8.8 96 7-103 21-151 (167)
224 3mkq_B Coatomer subunit alpha; 89.4 3.3 0.00011 27.4 9.8 50 13-64 12-61 (177)
225 1wy6_A Hypothetical protein ST 88.0 3.8 0.00013 26.4 10.0 65 5-69 90-157 (172)
226 1pc2_A Mitochondria fission pr 87.3 1.7 5.9E-05 28.0 5.6 75 3-79 29-111 (152)
227 2p58_C Putative type III secre 87.3 3.3 0.00011 24.9 6.9 77 21-106 22-101 (116)
228 2uwj_G Type III export protein 87.1 3.1 0.00011 25.0 6.1 76 21-105 21-99 (115)
229 3u64_A Protein TP_0956; tetrat 87.0 1.9 6.6E-05 31.0 6.2 30 36-65 198-232 (301)
230 3u64_A Protein TP_0956; tetrat 86.9 4.2 0.00014 29.3 7.9 74 7-80 200-285 (301)
231 3esl_A Checkpoint serine/threo 86.0 6.2 0.00021 26.7 10.2 82 23-106 61-147 (202)
232 2ff4_A Probable regulatory pro 85.9 4.3 0.00015 30.1 7.9 60 40-102 174-233 (388)
233 2y69_E Cytochrome C oxidase su 85.3 5.4 0.00018 25.4 7.2 47 55-103 71-117 (152)
234 1dce_A Protein (RAB geranylger 85.2 12 0.0004 29.3 12.5 109 7-118 64-191 (567)
235 1dce_A Protein (RAB geranylger 84.9 12 0.00042 29.2 11.5 118 20-140 43-190 (567)
236 2uwj_G Type III export protein 84.5 4.8 0.00016 24.2 6.9 60 14-76 47-106 (115)
237 2p58_C Putative type III secre 84.1 5.1 0.00017 24.1 8.1 52 14-67 48-99 (116)
238 4h7y_A Dual specificity protei 84.0 4.2 0.00014 26.4 6.1 97 3-102 10-122 (161)
239 4b4t_R RPN7, 26S proteasome re 83.4 5 0.00017 30.2 7.4 93 8-100 133-234 (429)
240 3dss_A Geranylgeranyl transfer 83.3 11 0.00038 27.4 10.0 60 7-66 109-174 (331)
241 4gns_B Protein CSD3, chitin bi 81.5 11 0.00036 30.9 8.9 120 9-149 251-392 (754)
242 2ion_A PDCD4, programmed cell 79.3 9.9 0.00034 24.3 7.1 63 8-70 11-78 (152)
243 1v54_E Cytochrome C oxidase po 78.6 3.5 0.00012 24.8 4.0 72 9-81 11-88 (109)
244 3lvg_A Clathrin heavy chain 1; 78.3 1.3 4.4E-05 34.7 2.6 108 36-152 53-168 (624)
245 3mkq_B Coatomer subunit alpha; 78.1 12 0.00042 24.7 11.1 30 5-34 33-62 (177)
246 1nzn_A CGI-135 protein, fissio 77.2 11 0.00036 23.5 7.5 66 35-102 33-102 (126)
247 3lpz_A GET4 (YOR164C homolog); 76.4 20 0.00068 26.2 15.1 23 8-30 37-59 (336)
248 2nsz_A Programmed cell death p 76.0 11 0.00039 23.2 8.4 63 8-70 9-76 (129)
249 3txn_A 26S proteasome regulato 74.5 13 0.00045 27.8 7.1 89 11-100 104-207 (394)
250 2nsz_A Programmed cell death p 74.4 12 0.00041 23.1 6.0 77 39-118 9-87 (129)
251 4a1g_A Mitotic checkpoint seri 73.8 15 0.00051 23.6 10.0 58 54-113 82-140 (152)
252 3q7a_A Farnesyltransferase alp 73.2 25 0.00084 25.8 11.3 107 9-118 57-172 (349)
253 4aez_C MAD3, mitotic spindle c 71.1 8.8 0.0003 26.4 5.1 49 54-104 131-180 (223)
254 1zbp_A Hypothetical protein VP 70.4 26 0.00089 24.8 8.0 102 45-150 5-122 (273)
255 4h7y_A Dual specificity protei 68.8 21 0.00071 23.1 7.6 65 36-101 12-87 (161)
256 4fhn_B Nucleoporin NUP120; pro 67.1 51 0.0018 28.1 9.9 108 13-122 849-988 (1139)
257 2y69_E Cytochrome C oxidase su 67.0 8.9 0.0003 24.4 4.0 72 9-81 54-131 (152)
258 1nzn_A CGI-135 protein, fissio 66.4 18 0.00063 22.4 5.5 63 4-66 33-103 (126)
259 3ygs_P Procaspase 9; apoptosis 65.6 16 0.00055 21.3 4.9 30 88-117 51-80 (97)
260 2ion_A PDCD4, programmed cell 65.3 12 0.00041 23.9 4.6 77 39-118 11-89 (152)
261 2ijq_A Hypothetical protein; s 65.2 25 0.00086 22.8 6.3 61 40-101 36-102 (161)
262 4fhn_B Nucleoporin NUP120; pro 64.4 61 0.0021 27.7 9.8 54 9-63 815-868 (1139)
263 2qx5_A Nucleoporin NIC96; mRNA 64.2 55 0.0019 26.3 10.6 87 14-100 451-564 (661)
264 1zbp_A Hypothetical protein VP 63.8 14 0.00048 26.2 5.0 68 14-81 5-77 (273)
265 4b4t_P 26S proteasome regulato 63.1 46 0.0016 25.1 8.9 139 9-149 140-316 (445)
266 3ygs_P Procaspase 9; apoptosis 62.3 12 0.00041 21.9 3.9 39 51-95 51-89 (97)
267 2d2s_A Exocyst complex compone 58.4 41 0.0014 23.1 6.6 87 10-101 22-118 (235)
268 1wgl_A TOLL-interacting protei 57.5 20 0.00067 19.0 4.9 23 49-71 35-57 (59)
269 4gns_B Protein CSD3, chitin bi 56.5 38 0.0013 27.7 7.0 53 45-101 345-398 (754)
270 3eiq_C Programmed cell death p 56.0 58 0.002 24.0 8.0 60 9-68 220-284 (358)
271 2wvi_A Mitotic checkpoint seri 55.6 39 0.0013 21.9 9.8 64 36-104 62-126 (164)
272 2zu6_B Programmed cell death p 55.1 55 0.0019 23.5 7.6 62 9-70 169-235 (307)
273 3txn_A 26S proteasome regulato 54.7 64 0.0022 24.1 11.4 92 8-101 21-126 (394)
274 1q02_A Sequestosome 1; helical 54.0 21 0.00073 18.4 5.3 40 56-99 10-49 (52)
275 2qx5_A Nucleoporin NIC96; mRNA 53.9 61 0.0021 26.1 7.7 82 13-104 301-386 (661)
276 1oai_A Nuclear RNA export fact 53.3 11 0.00038 19.9 2.4 22 51-72 34-56 (59)
277 2d2s_A Exocyst complex compone 53.1 52 0.0018 22.6 7.5 42 24-65 77-119 (235)
278 1ug3_A EIF4GI, eukaryotic prot 52.5 63 0.0022 23.3 8.5 61 8-68 13-77 (339)
279 3bu8_A Telomeric repeat-bindin 52.2 49 0.0017 22.7 5.9 49 53-103 88-143 (235)
280 2b7e_A PRE-mRNA processing pro 52.0 15 0.00052 19.5 2.8 29 53-81 2-30 (59)
281 3l6a_A Eukaryotic translation 50.0 74 0.0025 23.4 7.3 61 8-68 14-79 (364)
282 3us6_A Histidine-containing ph 47.9 51 0.0017 20.9 9.1 90 8-102 9-121 (153)
283 3qil_A Clathrin heavy chain 1; 45.9 22 0.00076 21.9 3.2 51 40-95 35-85 (125)
284 2keb_A DNA polymerase subunit 45.5 46 0.0016 19.7 5.5 30 53-82 25-54 (101)
285 2o03_A Probable zinc uptake re 45.2 45 0.0015 20.3 4.7 47 42-90 15-61 (131)
286 2p1h_A APAF-1, apoptotic prote 45.0 42 0.0014 19.1 4.8 40 50-95 49-88 (94)
287 4b4t_P 26S proteasome regulato 43.0 1E+02 0.0036 23.1 8.9 28 6-33 56-83 (445)
288 4b4t_R RPN7, 26S proteasome re 42.8 38 0.0013 25.3 4.8 61 39-101 133-195 (429)
289 3eiq_C Programmed cell death p 42.7 46 0.0016 24.5 5.1 77 39-118 219-297 (358)
290 3mwm_A ZUR, putative metal upt 42.2 42 0.0014 20.7 4.3 47 42-90 18-64 (139)
291 3cqc_A Nuclear pore complex pr 38.8 33 0.0011 24.2 3.6 27 9-35 37-63 (270)
292 3ltj_A Alpharep-4; protein eng 38.6 75 0.0026 20.2 15.2 112 3-120 25-136 (201)
293 1bd8_A P19INK4D CDK4/6 inhibit 38.4 64 0.0022 19.4 4.9 81 11-100 4-91 (156)
294 4a1g_A Mitotic checkpoint seri 37.1 54 0.0019 21.0 4.2 50 23-72 82-136 (152)
295 1mzb_A Ferric uptake regulatio 37.0 56 0.0019 20.0 4.2 45 43-89 23-68 (136)
296 3t5v_B Nuclear mRNA export pro 36.4 83 0.0028 24.0 5.8 62 38-100 177-246 (455)
297 2f6m_A Suppressor protein STP2 36.0 53 0.0018 17.8 4.1 43 38-81 3-45 (65)
298 3r88_A Anthranilate phosphorib 35.4 1E+02 0.0035 22.8 6.0 63 4-66 21-88 (377)
299 2rg8_A Programmed cell death p 34.9 82 0.0028 20.2 4.9 69 8-81 12-84 (165)
300 2zu6_B Programmed cell death p 34.2 58 0.002 23.4 4.4 77 39-118 168-246 (307)
301 4b4t_S RPN3, 26S proteasome re 34.1 1.7E+02 0.0057 22.9 8.4 60 6-65 231-298 (523)
302 4b4t_S RPN3, 26S proteasome re 34.1 1.7E+02 0.0057 22.9 9.6 62 37-101 231-297 (523)
303 3eu9_A Huntingtin-interacting 33.0 72 0.0025 20.6 4.6 15 85-99 117-131 (240)
304 2fe3_A Peroxide operon regulat 32.9 88 0.003 19.3 6.6 38 44-81 28-65 (145)
305 2wpv_A GET4, UPF0363 protein Y 32.9 1.4E+02 0.0047 21.5 14.9 63 8-81 35-101 (312)
306 3dss_A Geranylgeranyl transfer 32.1 1.4E+02 0.0049 21.5 10.7 94 22-118 90-192 (331)
307 3twr_A Tankyrase-2; ankyrin re 31.9 88 0.003 19.0 5.5 83 10-100 9-98 (165)
308 2fu4_A Ferric uptake regulatio 31.5 66 0.0023 17.4 3.8 9 63-71 8-16 (83)
309 3esl_A Checkpoint serine/threo 31.1 1.2E+02 0.0041 20.4 7.3 53 20-72 93-150 (202)
310 1ixm_A SPO0B, protein (sporula 30.8 55 0.0019 21.6 3.6 27 39-65 34-60 (192)
311 3kea_A K1L; tropism, ANK repea 30.0 52 0.0018 22.6 3.5 82 12-100 34-118 (285)
312 3f6q_A Integrin-linked protein 29.8 1E+02 0.0035 19.1 5.8 80 13-100 9-95 (179)
313 2w57_A Ferric uptake regulatio 29.6 74 0.0025 19.9 3.9 46 43-90 22-68 (150)
314 3ltj_A Alpharep-4; protein eng 29.4 1.1E+02 0.0038 19.4 13.1 110 3-118 56-165 (201)
315 2cwb_A Chimera of immunoglobul 29.2 95 0.0033 18.6 4.7 38 57-99 67-104 (108)
316 3eyy_A Putative iron uptake re 28.8 77 0.0026 19.7 3.9 44 43-89 24-67 (145)
317 3bge_A Predicted ATPase; struc 28.7 93 0.0032 20.9 4.3 41 41-81 8-51 (201)
318 2ijq_A Hypothetical protein; s 28.4 1.2E+02 0.0041 19.5 5.9 56 9-65 36-103 (161)
319 2cwy_A Hypothetical protein TT 28.4 79 0.0027 18.2 3.6 50 49-100 13-65 (94)
320 1nnv_A Hypothetical protein HI 28.1 32 0.0011 20.6 1.8 24 53-76 17-41 (110)
321 1ug3_A EIF4GI, eukaryotic prot 27.6 27 0.00092 25.3 1.7 76 40-118 14-90 (339)
322 3cqc_A Nuclear pore complex pr 27.6 48 0.0016 23.3 3.0 26 39-64 36-61 (270)
323 1wdy_A 2-5A-dependent ribonucl 27.6 1.3E+02 0.0043 19.9 5.2 22 11-32 7-28 (285)
324 2rfa_A Transient receptor pote 27.3 1.3E+02 0.0044 19.4 6.2 88 11-102 123-222 (232)
325 1zl8_A LIN-7; heterodimer, alp 27.0 36 0.0012 17.4 1.6 21 51-71 7-27 (53)
326 4hbd_A KN motif and ankyrin re 26.8 1.1E+02 0.0039 20.7 4.9 86 12-100 114-206 (276)
327 3t8k_A Uncharacterized protein 26.6 1.3E+02 0.0044 19.2 5.7 66 15-81 12-82 (186)
328 3ctd_A Putative ATPase, AAA fa 26.0 1.1E+02 0.0037 20.8 4.3 46 36-81 31-79 (213)
329 2ko4_A Mediator of RNA polymer 25.8 45 0.0016 18.8 2.0 29 3-31 33-61 (81)
330 1vej_A Riken cDNA 4931431F19; 25.7 92 0.0031 17.2 3.7 37 59-100 32-68 (74)
331 1wdy_A 2-5A-dependent ribonucl 25.7 1E+02 0.0034 20.5 4.4 15 85-99 47-61 (285)
332 2f8y_A Notch homolog 1, transl 25.5 1E+02 0.0034 19.8 4.2 23 11-33 27-49 (223)
333 3bqo_A Telomeric repeat-bindin 25.4 1.6E+02 0.0055 19.9 7.2 47 53-102 94-145 (211)
334 1k1a_A B-cell lymphoma 3-encod 25.3 1.2E+02 0.004 19.7 4.5 83 11-101 11-103 (241)
335 2bwb_A Ubiquitin-like protein 24.7 72 0.0025 15.7 4.8 35 58-97 9-43 (46)
336 3ljn_A Hypothetical protein; a 24.1 96 0.0033 21.9 4.2 22 11-32 22-43 (364)
337 2jab_A H10-2-G3; HER2, darpin, 23.9 1.2E+02 0.004 17.8 6.6 86 6-99 11-102 (136)
338 1q2z_A ATP-dependent DNA helic 23.7 25 0.00085 21.5 0.8 31 52-82 42-73 (120)
339 3f3f_C Nucleoporin NUP85; stru 23.5 2.8E+02 0.0094 22.0 6.9 27 73-101 517-543 (570)
340 2dna_A Unnamed protein product 23.4 99 0.0034 16.8 3.7 37 59-100 22-58 (67)
341 4e2i_2 DNA polymerase alpha su 23.0 83 0.0029 17.7 2.8 27 56-82 5-31 (78)
342 1te4_A Conserved protein MTH18 22.9 1.2E+02 0.0043 17.8 6.5 75 26-106 45-119 (131)
343 2dah_A Ubiquilin-3; UBA domain 22.5 89 0.003 16.0 4.2 37 59-100 12-48 (54)
344 3aji_A 26S proteasome non-ATPa 22.5 58 0.002 21.1 2.6 83 11-101 8-97 (231)
345 4ets_A Ferric uptake regulatio 22.4 1.6E+02 0.0053 18.7 5.5 39 43-81 38-78 (162)
346 1oxz_A ADP-ribosylation factor 22.1 1.8E+02 0.0061 19.2 5.3 73 10-82 35-116 (186)
347 1wr1_B Ubiquitin-like protein 21.9 97 0.0033 16.1 4.2 35 59-98 20-54 (58)
348 2r9g_A AAA ATPase, central reg 21.9 1.1E+02 0.0036 20.7 3.6 41 40-81 14-57 (204)
349 1s70_B 130 kDa myosin-binding 21.3 1.6E+02 0.0055 19.8 4.8 84 9-100 40-129 (299)
350 1yvi_A Histidine-containing ph 21.2 1.6E+02 0.0054 18.3 8.2 91 9-102 10-122 (149)
351 2qq8_A TBC1 domain family memb 21.0 95 0.0032 22.3 3.6 43 59-103 215-257 (334)
352 2jy5_A Ubiquilin-1; UBA, alter 21.0 94 0.0032 15.6 4.8 35 58-97 14-48 (52)
353 3l6a_A Eukaryotic translation 20.8 1.1E+02 0.0038 22.5 3.9 27 39-65 14-40 (364)
354 3v30_A DNA-binding protein rfx 20.8 1.5E+02 0.0052 18.0 4.9 79 13-99 6-91 (172)
355 2lwd_A Probable ATP-dependent 20.6 1.2E+02 0.0042 17.7 3.4 48 36-88 42-89 (100)
356 4ady_A RPN2, 26S proteasome re 20.3 4E+02 0.014 22.6 8.2 53 49-102 536-588 (963)
357 1naf_A ADP-ribosylation factor 20.1 1.8E+02 0.0062 18.6 4.8 73 10-82 19-100 (158)
358 3r88_A Anthranilate phosphorib 20.1 2.7E+02 0.0092 20.5 6.2 63 36-101 22-86 (377)
359 4gq2_M Nucleoporin NUP120; bet 20.0 3.9E+02 0.013 22.4 11.1 52 11-63 815-866 (950)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=7.4e-31 Score=203.16 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHhhCCCCCCh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNR---------FREALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~p~~ 72 (153)
...++.+|++|++.|++++|.++|++|. +||..+||+||.+|++.+. +++|.++|++|++.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 3468899999999999999999999997 5899999999999997654 68999999999999999999
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcc----cCChhhHHHHHHHHHhcCCCC------------CCCCCHhHHHHHHH
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKML----RKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVGVLS 136 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~------------~~~p~~~t~~~ll~ 136 (153)
.||+++|.+ |++.|++++|.++|++|. .||..+||++|.+|++.|.++ |+.||..||++||.
T Consensus 106 ~tyn~lI~~--~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~ 183 (501)
T 4g26_A 106 ATFTNGARL--AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183 (501)
T ss_dssp HHHHHHHHH--HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999999999 599999999999999996 469999999999999999888 99999999999999
Q ss_pred HHhcCCchhHhhhhcc
Q 035927 137 ACTHNGNETFVINSCN 152 (153)
Q Consensus 137 ~~~~~g~~~~a~~~~~ 152 (153)
+|++.|+.++|.++|+
T Consensus 184 ~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHH
Confidence 9999999999999874
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.4e-28 Score=189.09 Aligned_cols=139 Identities=13% Similarity=0.068 Sum_probs=130.1
Q ss_pred CCchhHHHHHHHHHHhcCC---------hHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 035927 3 NKDVISWTDIVSGYINRGQ---------VDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~---------~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 69 (153)
+||..|||+||++|++.+. +++|.++|++|. .||..|||+||++|++.|++++|+++|++|++.|+.
T Consensus 58 ~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~ 137 (501)
T 4g26_A 58 QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 137 (501)
T ss_dssp CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 5999999999999998765 688999999997 589999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHhcc----cCChhhHHHHHHHHHhcCCCC------------CCCCCHhHHHH
Q 035927 70 PDEFTIVRILTAYMYCKCGDVEKAQRVLRKML----RKDKFTWTAMIVGLAISDPFP------------TIRPDEVTYVG 133 (153)
Q Consensus 70 p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~~~~~------------~~~p~~~t~~~ 133 (153)
||..|||++|.+ |++.|++++|.++|+.|. .||..+|+++|.+|++.|.++ ++.|+..||+.
T Consensus 138 Pd~~tyn~lI~~--~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 138 PRLRSYGPALFG--FCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp CCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred CccceehHHHHH--HHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 999999999999 599999999999999995 469999999999999999888 89999999999
Q ss_pred HHHHHhcCCc
Q 035927 134 VLSACTHNGN 143 (153)
Q Consensus 134 ll~~~~~~g~ 143 (153)
++..++..+.
T Consensus 216 l~~~F~s~~a 225 (501)
T 4g26_A 216 IEEWFKSEVA 225 (501)
T ss_dssp HHHHHHSHHH
T ss_pred HHHHHhcCcc
Confidence 9999886543
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=6.6e-25 Score=178.05 Aligned_cols=110 Identities=12% Similarity=0.173 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP-------ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
..|||++|++||+.|++++|.++|++|. .||..|||+||++||+.|++++|.++|++|.+.|++||++|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-HHHHHHHHhcccC----ChhhHHHHHHHHHh
Q 035927 79 LTAYMYCKCGDV-EKAQRVLRKMLRK----DKFTWTAMIVGLAI 117 (153)
Q Consensus 79 i~~~~~~~~g~~-~~a~~~~~~m~~~----~~~~~~~li~~~~~ 117 (153)
|++ +++.|+. ++|.++|++|.+. |..+|++++.+..+
T Consensus 207 I~g--lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQC--MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHH--HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHH--HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 998 5999985 7899999999765 44444444333333
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=147.22 Aligned_cols=112 Identities=12% Similarity=0.019 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc----cCChhhHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQT---SNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML----RKDKFTWT 109 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~----~~~~~~~~ 109 (153)
+.|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++ ||+.|++++|.++|++|. +||++|||
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~G--lck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG--WARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 46899999999999999999999998864 4899999999999999 699999999999999995 57999999
Q ss_pred HHHHHHHhcCCC-C------------CCCCCHhHHHHHHHHHhcCCchhHhhhh
Q 035927 110 AMIVGLAISDPF-P------------TIRPDEVTYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 110 ~li~~~~~~~~~-~------------~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 150 (153)
++|.++|+.|.. + |+.||..||++++.++-+.+-++.+.++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999875 2 9999999999999999888877777665
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.60 E-value=2.1e-14 Score=111.63 Aligned_cols=146 Identities=12% Similarity=0.153 Sum_probs=101.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+..+|+.+...|.+.|++++|.++|+++. ..+..+|+.++..+.+.|++++|+++|+++.+.+ +.+..+++.+..
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 456667777777777777777777777764 2356677777777777777777777777776553 346677777777
Q ss_pred HHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------------CCCCC--HhHHHHHHHHHh
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------------TIRPD--EVTYVGVLSACT 139 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------------~~~p~--~~t~~~ll~~~~ 139 (153)
+ |.+.|++++|+++|+++.+ .+..+|+.++..|.+.|.++ +..|+ ..+|..+..+|.
T Consensus 450 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 450 Q--HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp H--HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred H--HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 6 4777777777777777643 35667777777777776665 23565 566777777777
Q ss_pred cCCchhHhhhhcc
Q 035927 140 HNGNETFVINSCN 152 (153)
Q Consensus 140 ~~g~~~~a~~~~~ 152 (153)
+.|++++|.+.|+
T Consensus 528 ~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 528 KLKMYDAAIDALN 540 (597)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHH
Confidence 7777777776653
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.55 E-value=2.5e-14 Score=111.15 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=63.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
+|..+|+.++..|.+.|++++|.++|+++.+ .+..+|+.++..+.+.|++++|..+++++.+.. +.+..+++.+..
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 6677777777777777777777777777741 244445555555555555555555555554321 234444444444
Q ss_pred HHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~ 122 (153)
. |.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|.++
T Consensus 382 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 424 (597)
T 2xpi_A 382 Y--YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD 424 (597)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred H--HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4 3555555555555555432 13445555555555554444
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.17 E-value=5.4e-11 Score=90.34 Aligned_cols=131 Identities=11% Similarity=0.126 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
+.+.+.++.+|.+.|+++++.++++ +|+..+|+.+...|...|.+++|...|..+ ..|..+..+ +.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~--L~ 159 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST--LV 159 (449)
T ss_dssp ---------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHH--HH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHH--HH
Confidence 3455556666666666666555553 255556666666666666666666666654 356666665 57
Q ss_pred ccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC-------CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP-------TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.|++++|.+.+++. .++.+|..++.+|+..|.|+ .+..++.-...++..|.+.|.+++|..+++
T Consensus 160 ~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 160 HLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp TTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777777777 36788888888888887766 222333334467788888888888877653
No 8
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.14 E-value=2.9e-09 Score=73.94 Aligned_cols=145 Identities=9% Similarity=0.015 Sum_probs=91.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
+...+..+...+.+.|++++|.+.+++.. ..+...|..+...+.+.|++++|...+++..+.+..| +...+..+..
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 44556666667777777777777776654 2255666777777777777777777777776633344 3334444444
Q ss_pred HHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~ 146 (153)
. |.+.|++++|.+.|++..+ | +...|..+...+...|.++ ...| +...+..+...+...|+.++
T Consensus 150 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 150 V--SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227 (252)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred H--HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence 4 5677777777777777643 2 4666666666676666655 3333 34556666677777777777
Q ss_pred hhhhc
Q 035927 147 VINSC 151 (153)
Q Consensus 147 a~~~~ 151 (153)
|.+.+
T Consensus 228 A~~~~ 232 (252)
T 2ho1_A 228 AASYG 232 (252)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.14 E-value=1.1e-09 Score=82.23 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...+..+...+.+.|++++|..+|+++.+ .+...|..+...+.+.|++++|...++++.+.+ +.+...+..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344566666666666666666666665541 245556666666666666666666666665442 1234444444444
Q ss_pred HHHhccCChHHHHHHHHhcc
Q 035927 82 YMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~ 101 (153)
|.+.|++++|.+.|+++.
T Consensus 104 --~~~~g~~~~A~~~~~~~~ 121 (450)
T 2y4t_A 104 --LLKQGKLDEAEDDFKKVL 121 (450)
T ss_dssp --HHHTTCHHHHHHHHHHHH
T ss_pred --HHHcCCHHHHHHHHHHHH
Confidence 455666666666665554
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.13 E-value=1.7e-09 Score=79.89 Aligned_cols=141 Identities=10% Similarity=0.040 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
|..+...+.+.|++++|...|++.. .| +..++..+...+.+.|++++|...++++.+.+ +.+..++..+... |.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~--~~ 282 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA--LK 282 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH--HH
Confidence 3333344444444444444443332 12 45677777788888888888888888887653 1245566666666 58
Q ss_pred ccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhHhhhhc
Q 035927 86 KCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.|++++|.+.|+++.+ .+..+|+.+...+...|.++ ...|+ ..++..+...+.+.|++++|.+.|
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888753 26777888888888777766 44454 567888888888888888888776
Q ss_pred c
Q 035927 152 N 152 (153)
Q Consensus 152 ~ 152 (153)
+
T Consensus 363 ~ 363 (388)
T 1w3b_A 363 K 363 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=3.3e-09 Score=78.41 Aligned_cols=143 Identities=11% Similarity=0.110 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----------------
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN----------------- 67 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----------------- 67 (153)
.+..+...+.+.|++++|.+.|+++. .| +..+|+.+...+.+.|++++|...|+++.+.+
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 34445555555555555555555553 12 34455555555555555555555555544321
Q ss_pred ---------------CCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC------
Q 035927 68 ---------------IRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP------ 122 (153)
Q Consensus 68 ---------------~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~------ 122 (153)
..| +..++..+... |.+.|++++|.+.|+++.+ | +..+|..+...+.+.|.++
T Consensus 217 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACV--YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 123 34455555554 5777777777777777743 2 4667777777777777666
Q ss_pred -----CCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -----TIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -----~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+.+..++..+...+.+.|++++|.+.|+
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 223456777777788888888888777653
No 12
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.08 E-value=6.9e-09 Score=71.38 Aligned_cols=146 Identities=11% Similarity=0.106 Sum_probs=120.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...+..+...+.+.|++++|...+++.. ..+...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 133 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGT 133 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456778889999999999999999999875 2377889999999999999999999999998754 235566666666
Q ss_pred HHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~ 146 (153)
. |.+.|++++|.+.+++..+ .+...|..+...+...|.++ ...| +...+..+...+.+.|+.++
T Consensus 134 ~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 211 (243)
T 2q7f_A 134 V--LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211 (243)
T ss_dssp H--HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTH
T ss_pred H--HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHH
Confidence 6 6999999999999999854 36788888999999998887 2334 46788899999999999999
Q ss_pred hhhhcc
Q 035927 147 VINSCN 152 (153)
Q Consensus 147 a~~~~~ 152 (153)
|.+.|+
T Consensus 212 A~~~~~ 217 (243)
T 2q7f_A 212 ALEMLD 217 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.07 E-value=5.8e-09 Score=70.75 Aligned_cols=144 Identities=10% Similarity=-0.002 Sum_probs=84.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...|..+...+.+.|++++|...|++.. ..+...|..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34456666666777777777777666654 2245566666666666666777766666665532 1234445545444
Q ss_pred HHHhcc-CChHHHHHHHHhccc--C---ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCch
Q 035927 82 YMYCKC-GDVEKAQRVLRKMLR--K---DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNE 144 (153)
Q Consensus 82 ~~~~~~-g~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~ 144 (153)
|... |++++|.+.++++.+ . +...|..+...+...|.++ ...|+ ...+..+...+.+.|+.
T Consensus 86 --~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 --LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp --HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred --HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 4666 667776666666654 1 2455566666666665555 22232 45566666666666666
Q ss_pred hHhhhhc
Q 035927 145 TFVINSC 151 (153)
Q Consensus 145 ~~a~~~~ 151 (153)
++|.+.+
T Consensus 164 ~~A~~~~ 170 (225)
T 2vq2_A 164 GDADYYF 170 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 14
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.07 E-value=6.8e-09 Score=68.18 Aligned_cols=144 Identities=12% Similarity=0.070 Sum_probs=118.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...|..+...+.+.|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~- 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT- 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH-
Confidence 34578888899999999999999999874 367889999999999999999999999998753 2356666666666
Q ss_pred HHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhHhh
Q 035927 83 MYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~a~ 148 (153)
|.+.|++++|.+.+++..+ .+...+..+...+...|.++ ...| +...+..+...+...|+.++|.
T Consensus 86 -~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 -YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp -HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 6999999999999999854 36778888888898888877 2234 5678889999999999999999
Q ss_pred hhcc
Q 035927 149 NSCN 152 (153)
Q Consensus 149 ~~~~ 152 (153)
+.++
T Consensus 165 ~~~~ 168 (186)
T 3as5_A 165 PHFK 168 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.07 E-value=3.7e-09 Score=79.27 Aligned_cols=148 Identities=13% Similarity=0.119 Sum_probs=122.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh----hHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE----FTI 75 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~t~ 75 (153)
+.+...|..+...+.+.|++++|...|+++.+ .+...|..+...+.+.|++++|...|+++.+.+ |+. ..+
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ 134 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQ 134 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHH
Confidence 35677899999999999999999999999863 367899999999999999999999999998753 443 455
Q ss_pred HHHHHH----------HHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCC-CCHhHH
Q 035927 76 VRILTA----------YMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIR-PDEVTY 131 (153)
Q Consensus 76 ~~li~~----------~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~-p~~~t~ 131 (153)
..+... ..|.+.|++++|.+.|+++.+ .+...+..+...|...|.++ ... .+..+|
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 214 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAF 214 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 544332 126899999999999999864 37888999999999999988 223 457889
Q ss_pred HHHHHHHhcCCchhHhhhhcc
Q 035927 132 VGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 132 ~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+...|.+.|+.++|.+.|+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999998874
No 16
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=5.7e-09 Score=64.90 Aligned_cols=123 Identities=19% Similarity=0.317 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYM 83 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~ 83 (153)
..|..+...+.+.|++++|..+++++. ..+...|..+...+...|++++|...++++.+.+ +.+...+..+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~-- 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA-- 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH--
Confidence 357888999999999999999999875 2467889999999999999999999999998754 3355667767666
Q ss_pred HhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.+.|++++|.+.++++.+.+ +.+...+..+...+.+.|+.++|.+.|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~--------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD--------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--------------------CCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 699999999999999987642 1356778888899999999999988764
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.06 E-value=4.9e-11 Score=90.55 Aligned_cols=134 Identities=9% Similarity=0.150 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
.+|..+..++.+.|++++|++.|.+ .+|..+|..+++.+.+.|++++|...++..++. .+++.+.+.++.+ |.+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~--Y~K 106 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFA--LAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHH--HHH
Confidence 4778888888888888888888855 356667777777777777777777766555542 3445666666666 577
Q ss_pred cCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCC---------------------------------CCCCCHhHHHH
Q 035927 87 CGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFP---------------------------------TIRPDEVTYVG 133 (153)
Q Consensus 87 ~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~---------------------------------~~~p~~~t~~~ 133 (153)
.|++++++++++. |+..+|+.+...|...|.++ .. .+..+|..
T Consensus 107 lg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA-~~~~~Wk~ 182 (449)
T 1b89_A 107 TNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA-NSTRTWKE 182 (449)
T ss_dssp --CHHHHTTTTTC---C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH-TCHHHHHH
T ss_pred hCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc-CCchhHHH
Confidence 7777776666542 44445555555555555555 11 36677777
Q ss_pred HHHHHhcCCchhHhhhh
Q 035927 134 VLSACTHNGNETFVINS 150 (153)
Q Consensus 134 ll~~~~~~g~~~~a~~~ 150 (153)
++.+|...|+++.|..+
T Consensus 183 v~~aCv~~~ef~lA~~~ 199 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMC 199 (449)
T ss_dssp HHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHH
Confidence 77777777777777543
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.05 E-value=3.9e-09 Score=76.11 Aligned_cols=140 Identities=10% Similarity=0.043 Sum_probs=78.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP----ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
|+..++..+...+.+.|+.++|.+.++++. .| +...+..+-..+.+.|++++|+..+++ +.+...+..+
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l 136 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHH
Confidence 455556666666666666666666666642 13 444455555666666666666666655 3455555555
Q ss_pred HHHHHHhccCChHHHHHHHHhccc--CChhhHHHHHHHHH----hcCCCC-----------CCCCCHhHHHHHHHHHhcC
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR--KDKFTWTAMIVGLA----ISDPFP-----------TIRPDEVTYVGVLSACTHN 141 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~----~~~~~~-----------~~~p~~~t~~~ll~~~~~~ 141 (153)
... |.+.|++++|.+.|+++.+ |+.. ...+..++. ..|.++ ..+.+...++.+..++.+.
T Consensus 137 ~~~--~~~~g~~~~A~~~l~~~~~~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 137 VQI--LLKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHH--HHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHH--HHHCCCHHHHHHHHHHHHhhCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 555 5677777777777777643 2211 111212211 112222 2234556677777777777
Q ss_pred CchhHhhhhcc
Q 035927 142 GNETFVINSCN 152 (153)
Q Consensus 142 g~~~~a~~~~~ 152 (153)
|++++|.+.|+
T Consensus 214 g~~~eA~~~l~ 224 (291)
T 3mkr_A 214 GRWEAAEGVLQ 224 (291)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 77777776653
No 19
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.05 E-value=2.6e-09 Score=73.55 Aligned_cols=143 Identities=13% Similarity=0.006 Sum_probs=74.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li 79 (153)
++...+..+-..+.+.|++++|...|++..+ | +...|..+-..+.+.|++++|...+++..+.. | +...+..+-
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 5555666666667777777777776666532 2 45566666666666666666666666665432 3 233333333
Q ss_pred HHHHHhcc-----------CChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCHhHHHHHH
Q 035927 80 TAYMYCKC-----------GDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDEVTYVGVL 135 (153)
Q Consensus 80 ~~~~~~~~-----------g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~~t~~~ll 135 (153)
.. |.+. |++++|+..|++..+ | +...|..+-..+...|.++ .+..+...+..+-
T Consensus 81 ~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EA--YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HH--HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HH--HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 33 3555 556666655555532 2 3444444444554444444 0003334444444
Q ss_pred HHHhcCCchhHhhhh
Q 035927 136 SACTHNGNETFVINS 150 (153)
Q Consensus 136 ~~~~~~g~~~~a~~~ 150 (153)
..+...|+.++|.+.
T Consensus 159 ~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHH
Confidence 444444444444443
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.04 E-value=7.6e-09 Score=68.79 Aligned_cols=145 Identities=10% Similarity=0.072 Sum_probs=118.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+..+|..+-..+.+.|++++|...|++.. .| +...|..+...+.+.|++++|...+.......- -+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 56689999999999999999999999976 33 788999999999999999999999999876532 233344444343
Q ss_pred HHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhHh
Q 035927 82 YMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETFV 147 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~a 147 (153)
+...++++.+.+.+.+..+ .+...+..+...+.+.|.++ .+.| +...|..+-..|.+.|+.++|
T Consensus 83 --~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 --NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 6899999999999998854 36788888999999998888 4455 457799999999999999999
Q ss_pred hhhcc
Q 035927 148 INSCN 152 (153)
Q Consensus 148 ~~~~~ 152 (153)
.+.|+
T Consensus 161 ~~~~~ 165 (184)
T 3vtx_A 161 VKYFK 165 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 21
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.03 E-value=1.2e-08 Score=69.20 Aligned_cols=147 Identities=13% Similarity=0.027 Sum_probs=119.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCC-hhHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIRPD-EFTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~t~~~l 78 (153)
.+...+..+...+...|++++|...+++.. ..+...+..+...+... |++++|...+++..+.+..|+ ...+..+
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 456788999999999999999999999885 23778899999999999 999999999999988444444 4556666
Q ss_pred HHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCC--CHhHHHHHHHHHhcCCc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRP--DEVTYVGVLSACTHNGN 143 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p--~~~t~~~ll~~~~~~g~ 143 (153)
... |.+.|++++|.+.|+++.+ | +...+..+...+...|.++ ...| +...+..+...+...|+
T Consensus 120 ~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (225)
T 2vq2_A 120 GIC--SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN 197 (225)
T ss_dssp HHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHH--HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence 665 6999999999999999854 3 5788899999999998887 3334 56677788888889999
Q ss_pred hhHhhhhcc
Q 035927 144 ETFVINSCN 152 (153)
Q Consensus 144 ~~~a~~~~~ 152 (153)
.+.|..+++
T Consensus 198 ~~~a~~~~~ 206 (225)
T 2vq2_A 198 AQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.99 E-value=9.5e-09 Score=75.23 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
+...|..+...+.+.|++++|...|++..+ .+..+|..+...+.+.|++++|...++++.+
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 344455555555555555555555555431 2445555555555556666666666655543
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.98 E-value=1.3e-08 Score=70.68 Aligned_cols=144 Identities=8% Similarity=-0.027 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...|..+...+...|++++|...|++.. ..+...|..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~- 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF- 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH-
Confidence 4668889999999999999999999886 2377889999999999999999999999998753 2356677777776
Q ss_pred HHhccCChHHHHHHHHhccc----C-ChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhH
Q 035927 83 MYCKCGDVEKAQRVLRKMLR----K-DKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~----~-~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~ 146 (153)
|.+.|++++|.+.++++.+ + +...|..+...+...|.++ ...| +...+..+...+.+.|+.++
T Consensus 115 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 -LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp -HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 6999999999999999876 2 4667888888888888877 3334 46788899999999999999
Q ss_pred hhhhcc
Q 035927 147 VINSCN 152 (153)
Q Consensus 147 a~~~~~ 152 (153)
|.+.|+
T Consensus 194 A~~~~~ 199 (252)
T 2ho1_A 194 ARQYYD 199 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.97 E-value=3.8e-09 Score=77.34 Aligned_cols=92 Identities=8% Similarity=0.043 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...+..+...+.+.|++++|..+|+++.+ .+...|..+...+.+.|++++|...|++..+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~- 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS- 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH-
Confidence 34456666666666666666666666542 255566666666666666666666666665432 1234445555544
Q ss_pred HHhccCChHHHHHHHHhc
Q 035927 83 MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m 100 (153)
|.+.|++++|.+.|+++
T Consensus 143 -~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 143 -YTNTSHQQDACEALKNW 159 (365)
T ss_dssp -HHHTTCHHHHHHHHHHH
T ss_pred -HHccccHHHHHHHHHHH
Confidence 45555555555555554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.93 E-value=3.3e-08 Score=71.19 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHH---HHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV---RILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~---~li~~ 81 (153)
+...+..+-..+.+.|++++|.+.+++ ..+...+..+...+.+.|++++|...++.+.+.. |+....+ .++..
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSL 175 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHH
Confidence 344566777899999999999999999 5688899999999999999999999999998764 6643222 22333
Q ss_pred HHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhH-
Q 035927 82 YMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETF- 146 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~- 146 (153)
+...|++++|..+|+++.+ | +...|+.+..++.+.|.++ ...| +..++..+...+...|+.++
T Consensus 176 --~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 176 --AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp --HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred --HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 3556899999999999964 3 7889999999999999998 4456 56789999999999999865
Q ss_pred hhhhc
Q 035927 147 VINSC 151 (153)
Q Consensus 147 a~~~~ 151 (153)
+.+++
T Consensus 254 a~~~~ 258 (291)
T 3mkr_A 254 TNRYL 258 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44554
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.92 E-value=2.6e-08 Score=68.56 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=109.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHhhCCC
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRV-----------NRFREALTLFPEMQTSNI 68 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~ 68 (153)
+.+...+..+-..+.+.|++++|...|++.. .| +...|..+-..+.+. |++++|...+++..+.
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-- 113 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-- 113 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--
Confidence 3456778899999999999999999999876 34 677899999999999 9999999999999875
Q ss_pred CCC-hhHHHHHHHHHHHhccCChHHHHHHHHhccc--CChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHH
Q 035927 69 RPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--KDKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGV 134 (153)
Q Consensus 69 ~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~l 134 (153)
.|+ ...+..+-.. |.+.|++++|++.|++..+ .+...+..+...+...|.++ ...|+ ...+..+
T Consensus 114 ~P~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 191 (217)
T 2pl2_A 114 NPRYAPLHLQRGLV--YALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191 (217)
T ss_dssp CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CcccHHHHHHHHHH--HHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 354 4445444444 7999999999999999754 56788899999999999888 44564 5778889
Q ss_pred HHHHhcCCchhHhhhhcc
Q 035927 135 LSACTHNGNETFVINSCN 152 (153)
Q Consensus 135 l~~~~~~g~~~~a~~~~~ 152 (153)
...+.+.|+.++|.+.|+
T Consensus 192 a~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 192 ASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHTC------------
T ss_pred HHHHHHccCHHHHHHHHH
Confidence 999999999999998875
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.91 E-value=5.1e-08 Score=69.74 Aligned_cols=143 Identities=14% Similarity=0.155 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHhcC-ChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 6 VISWTDIVSGYINRG-QVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 6 ~~~~~~li~~~~~~g-~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
...|..+...+...| ++++|...|++..+ .+...|..+...+...|++++|...+++..+..- .+...+..+...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 168 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLE 168 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 444555555555555 56666666555432 2344555555555555666666666555554321 122333333333
Q ss_pred HHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------C----------CCCCHhHHHHHHHHH
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------T----------IRPDEVTYVGVLSAC 138 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~----------~~p~~~t~~~ll~~~ 138 (153)
|.+.|++++|.+.+++..+. +...|..+...+...|.++ . .+.+...+..+...+
T Consensus 169 --~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 169 --YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp --HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred --HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 45555666666555555331 3445555555555554444 0 012234555555555
Q ss_pred hcCCchhHhhhhc
Q 035927 139 THNGNETFVINSC 151 (153)
Q Consensus 139 ~~~g~~~~a~~~~ 151 (153)
.+.|++++|.+.|
T Consensus 247 ~~~g~~~~A~~~~ 259 (330)
T 3hym_B 247 RKLKKYAEALDYH 259 (330)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHH
Confidence 5556655555544
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.91 E-value=5.4e-08 Score=70.95 Aligned_cols=145 Identities=13% Similarity=0.151 Sum_probs=79.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-------------
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI------------- 68 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------- 68 (153)
+...|..+...+.+.|++++|...|++.. ..+..++..+...+.+.|++++|...++++.+..-
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 176 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHh
Confidence 44455666666666666666666666553 22555666666666666666666666665544321
Q ss_pred ----------------------------------CC---ChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhH
Q 035927 69 ----------------------------------RP---DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTW 108 (153)
Q Consensus 69 ----------------------------------~p---~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~ 108 (153)
.| +..++..+... |.+.|++++|...|++..+ | +...|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~ 254 (368)
T 1fch_A 177 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL--FNLSGEYDKAVDCFTAALSVRPNDYLLW 254 (368)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 01 23344444444 4566666666666665532 2 34555
Q ss_pred HHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 109 TAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 109 ~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
..+...+...|.++ ...| +...+..+...|.+.|++++|.+.|
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 308 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 308 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55666666555555 2223 3455566666666666666666554
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.90 E-value=3.9e-08 Score=70.39 Aligned_cols=146 Identities=12% Similarity=0.068 Sum_probs=109.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...|..+...+.+.|++++|...|++..+ | +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 201 (330)
T 3hym_B 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV 201 (330)
T ss_dssp TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456788888888888888888888888752 2 45667778888888888888888888887653 234566666666
Q ss_pred HHHHhccCChHHHHHHHHhccc-----------C-ChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR-----------K-DKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSA 137 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~-----------~-~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~ 137 (153)
. |.+.|++++|.+.+++..+ + +...|..+...+...|.++ ...| +...+..+...
T Consensus 202 ~--~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 202 V--AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred H--HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 5 6888888888888888743 2 3567888888888887777 3334 45677888888
Q ss_pred HhcCCchhHhhhhcc
Q 035927 138 CTHNGNETFVINSCN 152 (153)
Q Consensus 138 ~~~~g~~~~a~~~~~ 152 (153)
+.+.|+.++|.+.|+
T Consensus 280 ~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 280 HSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHH
Confidence 888888888887764
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2e-08 Score=69.47 Aligned_cols=147 Identities=14% Similarity=0.220 Sum_probs=106.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-C-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-D-------YVLWTAMIDGYLRVNRFREALTLFPEMQTSN------ 67 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------ 67 (153)
++...|..+...+.+.|++++|...+++..+ | + ...|..+...+.+.|++++|...+++..+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 36 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHH
Confidence 3456777788888888888888888887753 2 1 5778888888888888888888888887632
Q ss_pred ------------------CCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC---
Q 035927 68 ------------------IRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP--- 122 (153)
Q Consensus 68 ------------------~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~--- 122 (153)
..|+ ...+..+... |.+.|++++|.+.|++..+ .+...|..+...+...|.++
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE--YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence 2232 3334444444 6888888888888888753 25777888888888887777
Q ss_pred -------CCCCC-HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 -------TIRPD-EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 -------~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...|+ ...|..+...+.+.|+.++|.+.|+
T Consensus 194 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344 6778888888888898888887764
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.89 E-value=5.5e-08 Score=70.86 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...+..+...+.+.|++++|...|+++.+ .+...|..+...+.+.|++++|...+++..+.. +.+..++..+...
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456788999999999999999999999863 377889999999999999999999999998764 3466777777776
Q ss_pred HHHhccCChHHHHHHHHhcc
Q 035927 82 YMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~ 101 (153)
|.+.|++++|.+.++++.
T Consensus 142 --~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 142 --FTNESLQRQACEILRDWL 159 (368)
T ss_dssp --HHHTTCHHHHHHHHHHHH
T ss_pred --HHHcCCHHHHHHHHHHHH
Confidence 699999999999998764
No 32
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.86 E-value=6.8e-09 Score=71.42 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
+.....|..+...+.+.|++++|..+|++..+ .+...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34556688888899999999999999998853 367889999999999999999999999998753 23566677777
Q ss_pred HHHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchh
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNET 145 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~ 145 (153)
.. |.+.|++++|.+.++++.+ .+...|..+...+...|.++ ...| +...+..+...+.+.|+++
T Consensus 99 ~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NV--YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HH--HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HH--HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 66 6999999999999999854 36788888999999988887 3334 5678888999999999999
Q ss_pred Hhhhhcc
Q 035927 146 FVINSCN 152 (153)
Q Consensus 146 ~a~~~~~ 152 (153)
+|.+.|+
T Consensus 177 ~A~~~~~ 183 (243)
T 2q7f_A 177 EALSQFA 183 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.81 E-value=2.1e-07 Score=66.48 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=85.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-------------
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI------------- 68 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------------- 68 (153)
+...+..+...+.+.|++++|...+++..+ .+...+..+...+.+.|++++|...+++..+..-
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 445566666667777777777777766542 2556666666666667777777666666654310
Q ss_pred -----------------------------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHH
Q 035927 69 -----------------------------------RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTA 110 (153)
Q Consensus 69 -----------------------------------~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~ 110 (153)
+.+...+..+... |.+.|++++|.+.+++..+ | +...|..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 211 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL--YNLSNNYDSAAANLRRAVELRPDDAQLWNK 211 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 1123333333333 4666667777666666643 2 4556666
Q ss_pred HHHHHHhcCCCC----------CCCC-CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 111 MIVGLAISDPFP----------TIRP-DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 111 li~~~~~~~~~~----------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+...+...|.++ ...| +...+..+...+.+.|++++|.+.|
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 666666666555 2223 3456666667777777777776655
No 34
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=2e-07 Score=63.12 Aligned_cols=140 Identities=10% Similarity=-0.020 Sum_probs=103.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
+...+..+...+.+.|++++|...|++...++...|..+...+.+.|++++|...+++..+.. +.+...+..+-.. |
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~--~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML--Y 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH--H
Confidence 344566778889999999999999999988899999999999999999999999999998754 2355666666665 7
Q ss_pred hccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCH-hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 85 CKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDE-VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+.|++++|.+.|++..+.+...-. + .+...+. ...|+. ..+..+...+.+.|+.++|.+.|+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~--~-~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQL--I-DYKILGL--QFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSE--E-ECGGGTB--CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccH--H-HHHHhcc--ccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999998653100000 0 0000000 123333 667888888999999999988764
No 35
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.79 E-value=4.6e-08 Score=78.85 Aligned_cols=144 Identities=12% Similarity=0.063 Sum_probs=123.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
+...|+.|-..+.+.|++++|+..|++.. .| +...|+.+-..+.+.|++++|+..|++..+. .| +...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45679999999999999999999999876 34 6889999999999999999999999999875 35 4566776666
Q ss_pred HHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhH
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~ 146 (153)
. |.+.|++++|++.|++..+ | +...|+.+...+...|.++ .+.|+ ...+..+...+...|++++
T Consensus 86 ~--l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 T--LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred H--HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 6 7999999999999999854 3 6889999999999999888 56676 4678899999999999999
Q ss_pred hhhhcc
Q 035927 147 VINSCN 152 (153)
Q Consensus 147 a~~~~~ 152 (153)
|.+.|+
T Consensus 164 A~~~~~ 169 (723)
T 4gyw_A 164 YDERMK 169 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=7.4e-08 Score=66.55 Aligned_cols=145 Identities=18% Similarity=0.162 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC----hhHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN--IRPD----EFTIVR 77 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~~ 77 (153)
...|..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. ..|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999988742 677889999999999999999999999997642 2233 466666
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc--------------------------C---ChhhHHHHHHHHHhcCCCC------
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR--------------------------K---DKFTWTAMIVGLAISDPFP------ 122 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~--------------------------~---~~~~~~~li~~~~~~~~~~------ 122 (153)
+... |.+.|++++|.+.|++..+ . +...|..+...+...|.++
T Consensus 85 l~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 85 IGNA--YHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHH--HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHH--HHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666 6999999999999998865 2 3556777888888888777
Q ss_pred ----CCCC-CHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 ----TIRP-DEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 ----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...| +...|..+...+.+.|++++|.+.|+
T Consensus 163 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2334 56778899999999999999988764
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.79 E-value=1.5e-07 Score=67.19 Aligned_cols=134 Identities=10% Similarity=0.002 Sum_probs=68.4
Q ss_pred HHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHH
Q 035927 16 YINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEK 92 (153)
Q Consensus 16 ~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~ 92 (153)
+...|++++|...+++..+ .+...+..+...+.+.|++++|...+++..+.. +.+...+..+... |.+.|++++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~~~~ 224 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGAT--LANGNRPQE 224 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH--HHHcCCHHH
Confidence 3344444444444444431 134444444444444455555555544444321 1123333333333 344455555
Q ss_pred HHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCC-------------CHhHHHHHHHHHhcCCchhH
Q 035927 93 AQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRP-------------DEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 93 a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p-------------~~~t~~~ll~~~~~~g~~~~ 146 (153)
|.+.|++..+ | +...|..+...+...|.++ ...| +...|..+..++.+.|+.++
T Consensus 225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 5554444422 1 3444444444444444443 1123 36788999999999999999
Q ss_pred hhhhcc
Q 035927 147 VINSCN 152 (153)
Q Consensus 147 a~~~~~ 152 (153)
|.++++
T Consensus 305 A~~~~~ 310 (327)
T 3cv0_A 305 VELTYA 310 (327)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 998875
No 38
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.76 E-value=7.6e-08 Score=72.97 Aligned_cols=64 Identities=8% Similarity=0.155 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (153)
||...|..+..++.+.|++++|...+++.. .| +...|..+...+.+.|++++|...|+.+.+.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 103 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 677778888888888888888888888765 23 56678888888888888888888887776543
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.74 E-value=3.1e-07 Score=66.18 Aligned_cols=145 Identities=11% Similarity=0.083 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC----ChhHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP----DEFTIV 76 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~t~~ 76 (153)
.+...+..+...+.+.|++++|...|++..+ | +...|..+...+.+.|++++|...+++..+. .| +...+.
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 112 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAES 112 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHH
Confidence 3455677777777777777777777777652 3 5667777777777778888888888777654 24 222232
Q ss_pred HH------------HHHHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCC-CHhH
Q 035927 77 RI------------LTAYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRP-DEVT 130 (153)
Q Consensus 77 ~l------------i~~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p-~~~t 130 (153)
.+ ... +...|++++|.+.++++.+ .+...+..+...+...|.++ ...| +...
T Consensus 113 ~l~~~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 190 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALD--AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 22 123 5778888888888877743 25667777777777777766 3344 4567
Q ss_pred HHHHHHHHhcCCchhHhhhhcc
Q 035927 131 YVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 131 ~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+..+...+...|++++|.+.|+
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888888888877653
No 40
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.73 E-value=5e-08 Score=74.80 Aligned_cols=145 Identities=8% Similarity=0.011 Sum_probs=118.1
Q ss_pred CchhHHHHHHHHHHhcCCh-HHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQV-DIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~-~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
.+...+..+-..+...|++ ++|...|++.. .| +...|..+-..+.+.|++++|...|++..+.. |+...+..+-
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHH
Confidence 3566788888899999999 99999998875 33 67889999999999999999999999998764 7766666666
Q ss_pred HHHHHhcc---------CChHHHHHHHHhccc--C-ChhhHHHHHHHHHhc--------CCCC----------CCCC---
Q 035927 80 TAYMYCKC---------GDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAIS--------DPFP----------TIRP--- 126 (153)
Q Consensus 80 ~~~~~~~~---------g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~--------~~~~----------~~~p--- 126 (153)
.. |.+. |++++|++.|++..+ | +...|..+..+|... +.++ .+.|
T Consensus 178 ~~--~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MV--LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HH--HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HH--HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 66 6888 999999999999854 3 677888888888776 5555 4456
Q ss_pred -CHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 127 -DEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 127 -~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+...|..+-..|.+.|++++|.+.|+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66788899999999999999988764
No 41
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.72 E-value=4e-07 Score=65.66 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=115.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYV-LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
-+...|..+...+.+.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+.+ +++...|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a 175 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA 175 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3455799999999999999999999999864 4 343 89999999999999999999999998764 23444454443
Q ss_pred HHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------C---CCCC--HhHHHHHHHHHhcC
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------T---IRPD--EVTYVGVLSACTHN 141 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~---~~p~--~~t~~~ll~~~~~~ 141 (153)
... +...|+.++|.++|++..+ | +...|..++..+.+.|.++ . +.|+ ...|..++....+.
T Consensus 176 ~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 176 LME-YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHH-HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHH-HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 331 2347999999999999864 3 6788999998888888777 2 3554 45788888888899
Q ss_pred CchhHhhhhcc
Q 035927 142 GNETFVINSCN 152 (153)
Q Consensus 142 g~~~~a~~~~~ 152 (153)
|+.+.|..+++
T Consensus 255 g~~~~a~~~~~ 265 (308)
T 2ond_A 255 GDLASILKVEK 265 (308)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999987753
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.70 E-value=3.7e-07 Score=63.77 Aligned_cols=142 Identities=8% Similarity=-0.036 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh--hHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE--FTIVRILTAY 82 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~t~~~li~~~ 82 (153)
.+-.....+.+.|++++|...|++.. .| +...+..+...+.+.|++++|...+++..+.+-.|+. ..|..+-..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~- 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI- 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH-
Confidence 34455666777777777777777764 22 4456777777777777777777777777663322222 124444444
Q ss_pred HHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCCchhHhh
Q 035927 83 MYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g~~~~a~ 148 (153)
|.+.|++++|++.|++..+ | +...|..+...+...|.++ ...|+. ..|..+...+...+++++|.
T Consensus 84 -~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 -LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777643 2 4566666777776666665 334433 34444442444445677666
Q ss_pred hhc
Q 035927 149 NSC 151 (153)
Q Consensus 149 ~~~ 151 (153)
+.|
T Consensus 163 ~~~ 165 (272)
T 3u4t_A 163 SSF 165 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.70 E-value=3.1e-07 Score=66.18 Aligned_cols=145 Identities=13% Similarity=0.131 Sum_probs=114.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
|...+..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +-+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456788899999999999999999998862 367899999999999999999999999998753 2255666666666
Q ss_pred HHHhccCChHHHHHHHHhcccC------ChhhHHHH------------HHHHHhcCCCC----------CCCC-CHhHHH
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK------DKFTWTAM------------IVGLAISDPFP----------TIRP-DEVTYV 132 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~l------------i~~~~~~~~~~----------~~~p-~~~t~~ 132 (153)
|.+.|++++|.+.|++..+. +...+..+ ...+...|.++ ...| +...+.
T Consensus 81 --~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 81 --LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp --HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred --HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 79999999999999999653 23344433 45666666666 2334 567788
Q ss_pred HHHHHHhcCCchhHhhhhcc
Q 035927 133 GVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 133 ~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+...+...|++++|.+.++
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 89999999999999998764
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.66 E-value=1.4e-07 Score=65.95 Aligned_cols=143 Identities=11% Similarity=-0.009 Sum_probs=103.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+..+|..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 45678899999999999999999999876 2368899999999999999999999999998753 2345667766666
Q ss_pred HHHhccCChHHHHHHHHhccc--CChhhHHHHHHHHHhcCCCC-----------CCCCCHhHHHHHHHHHhcCCchhHhh
Q 035927 82 YMYCKCGDVEKAQRVLRKMLR--KDKFTWTAMIVGLAISDPFP-----------TIRPDEVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~~~~~-----------~~~p~~~t~~~ll~~~~~~g~~~~a~ 148 (153)
|.+.|++++|.+.|+++.+ |+.......+..+...+.++ ..+++...+ .+...+...++.++|.
T Consensus 121 --~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 121 --LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLM 197 (275)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHH
T ss_pred --HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHH
Confidence 6999999999999999864 43333333333333333333 222333333 4667777777777777
Q ss_pred hhc
Q 035927 149 NSC 151 (153)
Q Consensus 149 ~~~ 151 (153)
+.+
T Consensus 198 ~~~ 200 (275)
T 1xnf_A 198 ERL 200 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.64 E-value=8.9e-07 Score=60.67 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=103.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---E-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE-FTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~l 78 (153)
.|...+..+-..+.+.|++++|...|++.. . ++...+..+-..+.+.|++++|+..+++..+. .|+. ..+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHH
Confidence 456788888899999999999999999875 2 56777777888888999999999999998865 3544 444444
Q ss_pred HHHHHHhccCChHHHHHHHHhccc--C-Ch-------hhHHHHHHHHHhcCCCC----------CCCCC---HhHHHHHH
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR--K-DK-------FTWTAMIVGLAISDPFP----------TIRPD---EVTYVGVL 135 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~--~-~~-------~~~~~li~~~~~~~~~~----------~~~p~---~~t~~~ll 135 (153)
-.. |.+.|++++|++.|++..+ | +. ..|..+-..+...|.++ ...|+ ...|..+-
T Consensus 83 ~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAA--YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHH--HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 444 7999999999999999864 3 34 34666666666667666 56676 35677777
Q ss_pred HHHhcCCch
Q 035927 136 SACTHNGNE 144 (153)
Q Consensus 136 ~~~~~~g~~ 144 (153)
..|...|..
T Consensus 161 ~~~~~~~~~ 169 (228)
T 4i17_A 161 VLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777776
No 46
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=1.2e-06 Score=53.57 Aligned_cols=94 Identities=20% Similarity=0.395 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...|..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~- 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA- 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH-
Confidence 56788999999999999999999998852 367889999999999999999999999998753 3456677777776
Q ss_pred HHhccCChHHHHHHHHhccc
Q 035927 83 MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~ 102 (153)
|.+.|++++|.+.|+++.+
T Consensus 87 -~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 87 -YYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp -HHHTTCHHHHHHHHHHHHH
T ss_pred -HHHhcCHHHHHHHHHHHHH
Confidence 6999999999999999864
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.63 E-value=3.5e-07 Score=63.87 Aligned_cols=144 Identities=13% Similarity=-0.024 Sum_probs=106.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...|..+...+.+.|++++|...|++..+ | +...|..+...+.+.|++++|...++++.+. .|+.......+.
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~ 152 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLY 152 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 4577899999999999999999999998863 3 6789999999999999999999999999874 355555555555
Q ss_pred HHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC----------CCCCC-----HhHHHHHHHHHhcCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP----------TIRPD-----EVTYVGVLSACTHNG 142 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~----------~~~p~-----~~t~~~ll~~~~~~g 142 (153)
. +.+.|++++|...+++..+ ++...|. +...+...+..+ ...|+ ...+..+...+.+.|
T Consensus 153 ~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 153 L--AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp H--HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred H--HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcC
Confidence 5 3677999999999977643 2333333 333333333222 22232 467888888888999
Q ss_pred chhHhhhhcc
Q 035927 143 NETFVINSCN 152 (153)
Q Consensus 143 ~~~~a~~~~~ 152 (153)
+.++|.+.|+
T Consensus 230 ~~~~A~~~~~ 239 (275)
T 1xnf_A 230 DLDSATALFK 239 (275)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999888764
No 48
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.9e-07 Score=69.07 Aligned_cols=81 Identities=9% Similarity=-0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVG 114 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~ 114 (153)
..|..+...+.+.|++++|...+++..+.+ |+...+..+... |.+.|++++|.+.+++..+. +...|..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI--MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH--HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH--HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHH
Confidence 344444444445555555555555544332 223333333333 34455555555554444321 33444444444
Q ss_pred HHhcCCCC
Q 035927 115 LAISDPFP 122 (153)
Q Consensus 115 ~~~~~~~~ 122 (153)
+...|.++
T Consensus 314 ~~~~~~~~ 321 (514)
T 2gw1_A 314 NFILQNYD 321 (514)
T ss_dssp HHHTTCTT
T ss_pred HHHhCCHH
Confidence 44444444
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.61 E-value=2.3e-07 Score=65.78 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=112.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--------C---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------C
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--------R---DYVLWTAMIDGYLRVNRFREALTLFPEMQTS------N 67 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~ 67 (153)
+..++..+...+...|++++|..+|++..+ . ....+..+...+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456688999999999999999999998864 1 4567888999999999999999999998754 2
Q ss_pred CCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccC-----------ChhhHHHHHHHHHhcCCCC----------CC-
Q 035927 68 IRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----------DKFTWTAMIVGLAISDPFP----------TI- 124 (153)
Q Consensus 68 ~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~-----------~~~~~~~li~~~~~~~~~~----------~~- 124 (153)
-.| ....+..+... |...|++++|.+.|++..+. ....+..+...+...|.++ ..
T Consensus 106 ~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 106 DHPAVAATLNNLAVL--YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp TCHHHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH--HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 233 34455555555 79999999999999988531 3556777888888887776 11
Q ss_pred -------CCC-HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 125 -------RPD-EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 125 -------~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.|+ ...+..+...+.+.|++++|.+.|+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333 3568888899999999999998764
No 50
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.60 E-value=4.5e-07 Score=69.25 Aligned_cols=142 Identities=11% Similarity=-0.015 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
.+..+...+...|++++|...|++.. .|+...|..+...+.+.|++++|...+++..+.. +.+..++..+... |.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~~ 321 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQM--YF 321 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHH--HH
Confidence 46677788889999999999999986 4667888889999999999999999999998754 2356667777666 69
Q ss_pred ccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhcCCchhHhhhhc
Q 035927 86 KCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.|++++|.+.|++..+ | +...|..+...+...|.++ ...|+ ...+..+...+.+.|++++|.+.|
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999854 3 5778889999999998887 33454 567888999999999999999876
Q ss_pred c
Q 035927 152 N 152 (153)
Q Consensus 152 ~ 152 (153)
+
T Consensus 402 ~ 402 (537)
T 3fp2_A 402 D 402 (537)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.56 E-value=1.6e-07 Score=65.48 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=21.1
Q ss_pred HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 128 EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 128 ~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...+..+...|.+.|++++|.++|+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3568888899999999999998774
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.55 E-value=3.9e-06 Score=58.98 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLR----VNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
+...+..+-..+.+.|++++|...|++..++ +...+..+-..+.+ .+++++|...|++..+.+ +...+..+-
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4445566666666666777766666665433 44556666666666 666666666666666554 444444444
Q ss_pred HHHHHhc----cCChHHHHHHHHhcccC-ChhhHHHHHHHHHh
Q 035927 80 TAYMYCK----CGDVEKAQRVLRKMLRK-DKFTWTAMIVGLAI 117 (153)
Q Consensus 80 ~~~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~ 117 (153)
.. |.+ .+++++|++.|++..+. +...+..+-..|..
T Consensus 82 ~~--~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 82 NL--YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHD 122 (273)
T ss_dssp HH--HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH--HhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHc
Confidence 44 455 66666666666665443 44555555555555
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.52 E-value=2.4e-07 Score=65.64 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS------NI 68 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~ 68 (153)
...+..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+. +.
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45688899999999999999999988752 2 4457888999999999999999999999764 22
Q ss_pred CCC-hhHHHHHHHHHHHhccCChHHHHHHHHhcccC------------ChhhHHHH------HHHHHhcCCCC-------
Q 035927 69 RPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK------------DKFTWTAM------IVGLAISDPFP------- 122 (153)
Q Consensus 69 ~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~------------~~~~~~~l------i~~~~~~~~~~------- 122 (153)
.|+ ..++..+... |.+.|++++|.+.+++..+. ....|... ...+...+.+.
T Consensus 191 ~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 191 DPNVAKTKNNLASC--YLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp CHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 343 3455555555 79999999999999998642 11112111 11122222222
Q ss_pred ---CCCCC-HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 123 ---TIRPD-EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 123 ---~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...|+ ..++..+...|.+.|++++|.+.|+
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 12343 4678899999999999999998874
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.51 E-value=3.6e-06 Score=58.71 Aligned_cols=24 Identities=8% Similarity=-0.153 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 129 VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 129 ~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..|..+-..|.+.|+.++|.+.|+
T Consensus 222 ~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 222 EANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467777778888888888887764
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.51 E-value=1.2e-06 Score=66.78 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=90.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+..+|..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI 387 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 455667777777777777777777776642 245667777777777777777777777776542 2234455555554
Q ss_pred HHHhccCChHHHHHHHHhcccC---------ChhhHHHHHHHHHhc----------CCCC----------CCCC-CHhHH
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK---------DKFTWTAMIVGLAIS----------DPFP----------TIRP-DEVTY 131 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~----------~~~~----------~~~p-~~~t~ 131 (153)
|.+.|++++|.+.|++..+. ....+......+... |.++ ...| +...+
T Consensus 388 --~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 465 (537)
T 3fp2_A 388 --LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465 (537)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHH
Confidence 57777777777777776431 111122223334333 3333 2234 45678
Q ss_pred HHHHHHHhcCCchhHhhhhcc
Q 035927 132 VGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 132 ~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+...+.+.|+.++|.+.|+
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHH
Confidence 888888888888888887764
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.50 E-value=2.5e-06 Score=55.64 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=96.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...+..+...+.+.|++++|...+++.. ..+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 118 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGV 118 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHH
Confidence 466778999999999999999999999875 2367889999999999999999999999998753 345666666666
Q ss_pred HHHHhccCChHHHHHHHHhccc---CChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR---KDKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~~~~ 122 (153)
. |.+.|++++|.+.+++..+ .+...|..+...+...|.++
T Consensus 119 ~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 119 A--LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred H--HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 6 6999999999999999854 26778888888888887655
No 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=4e-06 Score=51.50 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=88.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...+..+...+...|++++|...|++.. ..+...|..+...+...|++++|...++...+.. +.+...+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 345678888999999999999999999875 2377889999999999999999999999998753 234556666666
Q ss_pred HHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDP 120 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~ 120 (153)
. |.+.|++++|.+.|++..+. +...+..+...+...+.
T Consensus 89 ~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 A--LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred H--HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5 69999999999999998652 44455555555544443
No 58
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=4.3e-06 Score=51.78 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=86.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
+.+...|..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..+++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 45566789999999999999999999998753 377889999999999999999999999998753 23456666666
Q ss_pred HHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHH
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGL 115 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~ 115 (153)
.. |.+.|++++|.+.|++..+. +...+..+...+
T Consensus 92 ~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 92 AA--LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp HH--HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred HH--HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 65 69999999999999998653 333444444443
No 59
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.48 E-value=3.6e-06 Score=51.81 Aligned_cols=96 Identities=20% Similarity=0.387 Sum_probs=81.0
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...+..+...+.+.|++++|...++++. ..+...+..+...+.+.|++++|...++++.+.. +.+...+..+..
T Consensus 33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 111 (136)
T 2fo7_A 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 111 (136)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 456678889999999999999999999885 2367788999999999999999999999998753 235667777777
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
. |.+.|++++|.+.++.+.+
T Consensus 112 ~--~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 112 A--YYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp H--HHTTTCHHHHHHHHHHHHH
T ss_pred H--HHHHccHHHHHHHHHHHHc
Confidence 6 6999999999999998754
No 60
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.46 E-value=1.3e-06 Score=59.58 Aligned_cols=141 Identities=15% Similarity=0.071 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHH----------------HHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTA----------------MIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
.+-.....+.+.|++++|...|++..+ | +...|.. +-..+.+.|++++|...+++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 344455677889999999999999863 3 4455666 8888999999999999999998753
Q ss_pred CC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCC---------C-CCCCCH--hHHH
Q 035927 69 RP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPF---------P-TIRPDE--VTYV 132 (153)
Q Consensus 69 ~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~---------~-~~~p~~--~t~~ 132 (153)
| +...+..+-.. |.+.|++++|+..|++..+ | +...|..+...|...+.. . -..|+. ..+.
T Consensus 85 -p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 161 (208)
T 3urz_A 85 -PNNVDCLEACAEM--QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161 (208)
T ss_dssp -TTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHH
T ss_pred -CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHH
Confidence 5 45566666555 7999999999999999864 4 677788777776543211 1 123443 3344
Q ss_pred HHHHHHhcCCchhHhhhhcc
Q 035927 133 GVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 133 ~ll~~~~~~g~~~~a~~~~~ 152 (153)
..-.++...|++++|.+.|+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHH
Confidence 44556667888999887764
No 61
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=3.1e-06 Score=54.54 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~- 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS- 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH-
Confidence 3457778888999999999999999875 3378889999999999999999999999998753 2345566666555
Q ss_pred HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHH--HHHHHHHhcCCchhHhhhhc
Q 035927 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTY--VGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~--~~ll~~~~~~g~~~~a~~~~ 151 (153)
|.+.|++++|.+.|++..+.+. -+...+ ......+.+.|++++|.+.+
T Consensus 91 -~~~~~~~~~A~~~~~~a~~~~p--------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 140 (166)
T 1a17_A 91 -NMALGKFRAALRDYETVVKVKP--------------------HDKDAKMKYQECNKIVKQKAFERAIAGD 140 (166)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHST--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhccHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 7999999999999999876320 123333 33344466778888887765
No 62
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.41 E-value=2.2e-06 Score=56.66 Aligned_cols=142 Identities=11% Similarity=0.027 Sum_probs=102.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
.+......+.+.|++++|...|++..+ | +...+..+-..+.+.|++++|...++...+.. |+........... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~-~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE-L 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH-H
Confidence 456677788899999999999999874 3 67788889999999999999999998876542 3433322221111 2
Q ss_pred hccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC---HhHHHHHHHHHhcCCchhHhh
Q 035927 85 CKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD---EVTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~---~~t~~~ll~~~~~~g~~~~a~ 148 (153)
.+.++..+|...+++..+ | +...+..+...+...|.++ ...|+ ...+..+...+...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 333333456777777643 3 5778888888888888777 45565 457888999999999999998
Q ss_pred hhcc
Q 035927 149 NSCN 152 (153)
Q Consensus 149 ~~~~ 152 (153)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.40 E-value=1.6e-06 Score=66.41 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=120.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHhhCCCCCCh
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRV---------NRFREALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~ 72 (153)
-+...|..+-..|.+.|++++|...|++.. .|+...+..+-..+.+. |++++|...+++..+.. +-+.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 213 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDG 213 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCH
Confidence 346789999999999999999999999886 46778899999999999 99999999999998753 2356
Q ss_pred hHHHHHHHHHHHhcc--------CChHHHHHHHHhccc--C----ChhhHHHHHHHHHhcCCCC----------CCCCC-
Q 035927 73 FTIVRILTAYMYCKC--------GDVEKAQRVLRKMLR--K----DKFTWTAMIVGLAISDPFP----------TIRPD- 127 (153)
Q Consensus 73 ~t~~~li~~~~~~~~--------g~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~~~~~~----------~~~p~- 127 (153)
..+..+-.. |.+. |++++|++.|++..+ | +...|..+...|...|.++ ...|+
T Consensus 214 ~~~~~lg~~--~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 214 RSWYILGNA--YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHH--HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHH--HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 666666666 5777 899999999999854 3 6788999999999998888 44565
Q ss_pred HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 128 EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 128 ~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...+..+...+...|+.++|++.+.
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4568888899999999999987653
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.39 E-value=8.1e-06 Score=58.72 Aligned_cols=145 Identities=7% Similarity=0.078 Sum_probs=106.6
Q ss_pred CchhHHHHHHHHHH-------hcCCh-------HHHHHHHHhCCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 4 KDVISWTDIVSGYI-------NRGQV-------DIARQYFAQMPE---R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 4 pd~~~~~~li~~~~-------~~g~~-------~~a~~l~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
-+...|..+...+. +.|++ ++|..+|++..+ | +...|..+...+.+.|++++|..+|++..+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34556777777765 45886 899999998753 3 567899999999999999999999999997
Q ss_pred CCCCCChh--HHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHH-hcCCCC----------CCCC-CH
Q 035927 66 SNIRPDEF--TIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLA-ISDPFP----------TIRP-DE 128 (153)
Q Consensus 66 ~~~~p~~~--t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~-~~~~~~----------~~~p-~~ 128 (153)
. .|+.. .|..+... +.+.|++++|.++|++..+. +...|........ ..|..+ ...| +.
T Consensus 128 ~--~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 128 I--EDIDPTLVYIQYMKF--ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp S--SSSCTHHHHHHHHHH--HHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred c--cccCccHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 4 45432 68888777 58999999999999998763 3333432222211 134443 2234 45
Q ss_pred hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 129 VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 129 ~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..|..++..+.+.|+.++|..+|+
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888999999999999998874
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.38 E-value=1.4e-05 Score=56.16 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHHhCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhHHHH
Q 035927 7 ISWTDIVSGYIN----RGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFPEMQTSNIRPDEFTIVR 77 (153)
Q Consensus 7 ~~~~~li~~~~~----~g~~~~a~~l~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 77 (153)
..+..+-..+.+ .+++++|...|++..+ .+...+..+-..+.+ .+++++|...|++..+.+ +...+..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHH
Confidence 345555555555 6666666666655432 245555555555555 556666666666555543 3344444
Q ss_pred HHHHHHHhc----cCChHHHHHHHHhcccC-ChhhHHHHHHHHHh
Q 035927 78 ILTAYMYCK----CGDVEKAQRVLRKMLRK-DKFTWTAMIVGLAI 117 (153)
Q Consensus 78 li~~~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~ 117 (153)
+-.. |.+ .+++++|++.|++..+. +...+..+...|..
T Consensus 116 lg~~--~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 116 LGGI--YHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHH--HHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH--HHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 4443 344 55555555555555433 33444444444443
No 66
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=3.4e-06 Score=55.04 Aligned_cols=94 Identities=11% Similarity=0.128 Sum_probs=76.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~ 80 (153)
+...+..+-..+.+.|++++|...|++.. .| +...|..+-..+.+.|++++|...|++..+.. |+ ...+..+-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHH
Confidence 45567788889999999999999999886 34 77889999999999999999999999998753 43 444444444
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+ |.+.|++++|.+.|++..+
T Consensus 113 ~--~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 C--QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp H--HHHTTCHHHHHHHHHHHHH
T ss_pred H--HHHcCCHHHHHHHHHHHHH
Confidence 4 7999999999999999865
No 67
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.35 E-value=8.9e-06 Score=48.63 Aligned_cols=99 Identities=9% Similarity=0.021 Sum_probs=81.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CChhHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-PDEFTIVRI 78 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~l 78 (153)
+.+...+..+...+.+.|++++|...|++.. ..+...|..+...+.+.|++++|...+++..+..-. .+...+..+
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3456778889999999999999999999875 346788999999999999999999999999876311 146666666
Q ss_pred HHHHHHhcc-CChHHHHHHHHhcccC
Q 035927 79 LTAYMYCKC-GDVEKAQRVLRKMLRK 103 (153)
Q Consensus 79 i~~~~~~~~-g~~~~a~~~~~~m~~~ 103 (153)
... |.+. |++++|.+.++...+.
T Consensus 83 ~~~--~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADA--LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHH--HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHH--HHHHhCCHHHHHHHHHHHhhc
Confidence 666 6999 9999999999998764
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.34 E-value=9.7e-06 Score=60.66 Aligned_cols=138 Identities=7% Similarity=0.024 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNR-FREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
...|+.+-..+.+.|++++|+..+++.. .| +...|+.+-..+.+.|+ +++|+..+++..+.. | +...|..+-.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4568888889999999999999999886 34 67889999999999996 999999999998753 4 4555665555
Q ss_pred HHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHHHhc-CCchh
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSACTH-NGNET 145 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~~~~-~g~~~ 145 (153)
. |.+.|++++|+..|++..+ | +...|..+..++...|.++ .+.|+ ...|+.+-.++.+ .|..+
T Consensus 175 ~--~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 L--VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp H--HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred H--HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcch
Confidence 5 6999999999999999864 3 7889999999999999998 44564 5778888888888 66656
Q ss_pred Hh
Q 035927 146 FV 147 (153)
Q Consensus 146 ~a 147 (153)
+|
T Consensus 253 eA 254 (382)
T 2h6f_A 253 RA 254 (382)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 69
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.31 E-value=1.5e-05 Score=61.48 Aligned_cols=146 Identities=13% Similarity=0.115 Sum_probs=111.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DY-VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
.+...|..+...+.+.|++++|..+|++.. .| +. ..|...+..+.+.|++++|..+|++..+.. +.+...|-...
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a 397 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA 397 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH
Confidence 356779999999999999999999999886 34 33 589999999999999999999999998753 12333333333
Q ss_pred HHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------C---CCCC--HhHHHHHHHHHhcC
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------T---IRPD--EVTYVGVLSACTHN 141 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~---~~p~--~~t~~~ll~~~~~~ 141 (153)
..+ +...|+.++|.++|+...+ | +...|..++..+.+.|..+ . ..|+ ...|...+......
T Consensus 398 ~~~-~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 398 LME-YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHH-HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHH-HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 332 4579999999999998854 3 6788888888888877766 1 2333 34677888888889
Q ss_pred CchhHhhhhc
Q 035927 142 GNETFVINSC 151 (153)
Q Consensus 142 g~~~~a~~~~ 151 (153)
|+.+.+.+++
T Consensus 477 G~~~~~~~~~ 486 (530)
T 2ooe_A 477 GDLASILKVE 486 (530)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999888765
No 70
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.29 E-value=8.1e-06 Score=65.27 Aligned_cols=133 Identities=10% Similarity=0.007 Sum_probs=108.6
Q ss_pred HhcCChHHHHHHHHhCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 17 INRGQVDIARQYFAQMP-----------ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
...|++++|.+.+++.. ..+...|..+...+.+.|++++|++.+++..+.+ +-+...+..+-.. |.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~--~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVA--EL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHH--HH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHH--HH
Confidence 77899999999999875 2367789999999999999999999999998753 2244555555555 79
Q ss_pred ccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCCC---------CCCC-HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 86 KCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFPT---------IRPD-EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~~---------~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.|++++|++.|++..+ | +...|..+...+.+.|.++. ..|+ ...|..+-.++.+.|+.++|.+.|+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999864 3 67889999999999988874 3354 4678889999999999999998775
No 71
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.29 E-value=1.5e-05 Score=55.74 Aligned_cols=148 Identities=14% Similarity=0.133 Sum_probs=105.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-C---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCC-hhH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-D---YVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPD-EFT 74 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~-~~t 74 (153)
+.+...+-.+...+.+.|++++|...|++..+ | + ...+..+-..+.+.|++++|...|+...+.. -.|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34556677778888999999999999999863 3 3 5678888889999999999999999998752 1222 223
Q ss_pred HHHHHHHHHHhc--------cCChHHHHHHHHhccc--C-ChhhH-----------------HHHHHHHHhcCCCC----
Q 035927 75 IVRILTAYMYCK--------CGDVEKAQRVLRKMLR--K-DKFTW-----------------TAMIVGLAISDPFP---- 122 (153)
Q Consensus 75 ~~~li~~~~~~~--------~g~~~~a~~~~~~m~~--~-~~~~~-----------------~~li~~~~~~~~~~---- 122 (153)
+..+-.+ |.+ .|++++|++.|++..+ | +...+ ..+...|...|.++
T Consensus 92 ~~~lg~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMC--YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHH--HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH--HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 3333333 577 9999999999999864 3 23333 34456666777766
Q ss_pred ------CCCCC----HhHHHHHHHHHhcC----------CchhHhhhhcc
Q 035927 123 ------TIRPD----EVTYVGVLSACTHN----------GNETFVINSCN 152 (153)
Q Consensus 123 ------~~~p~----~~t~~~ll~~~~~~----------g~~~~a~~~~~ 152 (153)
...|+ ...+..+..+|... |++++|.+.|+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 23354 34567777777765 78888887764
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.29 E-value=1.4e-05 Score=62.26 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...|..+...+.+.|++++|.+.|++..+ .+...|..+-..+.+.|++++|...+++..+.. +-+...+..+-..
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 455677777788888888888888877653 256677778888888888888888888877643 2244555555555
Q ss_pred HHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcC---CchhHhhhhc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHN---GNETFVINSC 151 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~---g~~~~a~~~~ 151 (153)
|.+.|++++|.+.|++..+.+ +-+...+..+...+... |+.++|.+.|
T Consensus 101 --~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 101 --LEDAGQAEAAAAAYTRAHQLL--------------------PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred --HHHcCCHHHHHHHHHHHHHhC--------------------CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 688888888888888875431 11345566666666666 7777766654
No 73
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.27 E-value=1.8e-05 Score=49.65 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...+...-..+.+.|++++|.+.|++.. ..+...|..+-..+.+.|++++|+..+++.++.+ +.+...|..+-.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~- 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC- 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH-
Confidence 3457888899999999999999999875 3378899999999999999999999999998753 2345566666665
Q ss_pred HHhccCChHHHHHHHHhccc
Q 035927 83 MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~ 102 (153)
|.+.|++++|++.|++..+
T Consensus 91 -~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 91 -LVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp -HHHTTCHHHHHHHHHHHHH
T ss_pred -HHHCCCHHHHHHHHHHHHH
Confidence 7999999999999999865
No 74
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.27 E-value=1.1e-05 Score=60.37 Aligned_cols=145 Identities=8% Similarity=0.093 Sum_probs=116.6
Q ss_pred CchhHHHHHHHHHHhcCC-hHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQ-VDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~-~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
-+...|+.+-..+.+.|+ +++|+..|++..+ | +...|+.+-..+.+.|++++|+..|++.++.. +-+...|..+-
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg 207 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQ 207 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHH
Confidence 345679999999999997 9999999999873 3 77899999999999999999999999998753 23566666666
Q ss_pred HHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHh-cCCCC---------------CCCCC-HhHHHHHHHHHh
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAI-SDPFP---------------TIRPD-EVTYVGVLSACT 139 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~-~~~~~---------------~~~p~-~~t~~~ll~~~~ 139 (153)
.+ +.+.|++++|++.|+++.+ | +...|+.+...+.. .+..+ .+.|+ ...|+.+...+.
T Consensus 208 ~~--~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~ 285 (382)
T 2h6f_A 208 WV--IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285 (382)
T ss_dssp HH--HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred HH--HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 65 6999999999999999965 3 68899999999998 45533 34565 466888888888
Q ss_pred cCC--chhHhhhhc
Q 035927 140 HNG--NETFVINSC 151 (153)
Q Consensus 140 ~~g--~~~~a~~~~ 151 (153)
+.| +.++|++.+
T Consensus 286 ~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 286 DRGLSKYPNLLNQL 299 (382)
T ss_dssp TTCGGGCHHHHHHH
T ss_pred ccCccchHHHHHHH
Confidence 888 577777654
No 75
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.27 E-value=3.4e-06 Score=60.36 Aligned_cols=144 Identities=8% Similarity=-0.046 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
...+..+...+.+.|++++|...|++.. .| +...+..+...+.+.|++++|...+++.... .|+..........
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~- 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI- 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH-
Confidence 3456667777888899999999998875 33 6778888888889999999999998887654 3554443333333
Q ss_pred HHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC---HhHHHHHHHHHhcCCchhH
Q 035927 83 MYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD---EVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~---~~t~~~ll~~~~~~g~~~~ 146 (153)
.+.+.++.++|.+.+++..+ | +...+..+...+...|.++ ...|+ ...+..+...+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 25677777777777777643 3 5677777777777777776 33454 4568888888888998888
Q ss_pred hhhhcc
Q 035927 147 VINSCN 152 (153)
Q Consensus 147 a~~~~~ 152 (153)
|...|+
T Consensus 274 a~~~~r 279 (287)
T 3qou_A 274 LASXYR 279 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 76
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.26 E-value=1.4e-05 Score=58.12 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-----ChhHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-----DEFTIVR 77 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~t~~~ 77 (153)
+...+..++...|++++|++++++... .+...+..++..+.+.|+.+.|...++.|++. .| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHH
Confidence 334455555555555555555555421 13444555555555555555555555555443 23 2333333
Q ss_pred HHHHHHHhccC--ChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 78 ILTAYMYCKCG--DVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 78 li~~~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+..+......| +.++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.+
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~---------------------~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT---------------------FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT---------------------SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh---------------------CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 43331111122 555555555555442 466444455555888999999998875
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.26 E-value=2.9e-05 Score=66.33 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
..+|..+-.++.+.|++++|..-|.+- .|...|..++..+.+.|++++|...+...++
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 457888888888889999998888663 6777888888888888888888888865443
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=6e-05 Score=45.23 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--E-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...+..+...+...|++++|...|++.. . .+...+..+...+.+.|++++|...+++..+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45678889999999999999999999875 2 377889999999999999999999999998753 2345566666666
Q ss_pred HHHhccCChHHHHHHHHhcccC
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
|.+.|++++|.+.+++..+.
T Consensus 82 --~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 --LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --HHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHhhHHHHHHHHHHHHHc
Confidence 69999999999999998654
No 79
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=1.5e-05 Score=48.46 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
...|..+...+.+.|++++|...++++.+.. +.+...+..+... |.+.|++++|...|+++.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~------------ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA--YYKQGDYDEAIEYYQKALELD------------ 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHhC------------
Confidence 5678889999999999999999999998753 2356677777776 699999999999999986532
Q ss_pred hcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 117 ISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 117 ~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+...+.+.|++++|.+.|
T Consensus 74 --------~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (125)
T 1na0_A 74 --------PNNAEAWYNLGNAYYKQGDYDEAIEYY 100 (125)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --------CccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 124455666666677777777776655
No 80
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.22 E-value=7.6e-06 Score=52.91 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=58.9
Q ss_pred HhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHH
Q 035927 17 INRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEK 92 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~ 92 (153)
...|++++|+..+.+.... +...+-.+-..|.+.|++++|...|++..+. .| +...|..+-.. |.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~--~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLL--YELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH--HHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH--HHHcCchHH
Confidence 3445666666666665532 3334555666666777777777777766654 24 33334333333 567777777
Q ss_pred HHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC
Q 035927 93 AQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 93 a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~ 122 (153)
|+..|++..+ | +...|..+...+.+.+.++
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 7777776643 3 4555555555565555554
No 81
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.22 E-value=3.6e-05 Score=48.06 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
+.+...|..+...+.+.|++++|...|.+.. ..+...|..+...+.+.|++++|...++...+.. +-+...+..+-
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 4567789999999999999999999999875 2367889999999999999999999999998753 22455565555
Q ss_pred HHHHHhccCChHHHHHHHHhccc
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.. |.+.|++++|.+.|++..+
T Consensus 85 ~~--~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QC--QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HH--HHHTTCHHHHHHHHHHHHH
T ss_pred HH--HHHHhhHHHHHHHHHHHHH
Confidence 55 7999999999999999865
No 82
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.21 E-value=1.8e-05 Score=52.20 Aligned_cols=116 Identities=9% Similarity=0.057 Sum_probs=92.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
-+...|..+...+.+.|++++|...+.+.. ..+...+..+...+...++++.|...+.+..+.. +-+...+..+-.
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~ 115 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGL 115 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 456678899999999999999999998875 2366778888888888999999999999887643 224445555555
Q ss_pred HHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~ 122 (153)
. |.+.|++++|++.|++..+ | +...|..+...+.+.|.++
T Consensus 116 ~--~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 116 V--YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred H--HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 4 7999999999999999854 3 6788999999999988876
No 83
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.19 E-value=6.8e-06 Score=53.59 Aligned_cols=115 Identities=8% Similarity=-0.075 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAYMYC 85 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~ 85 (153)
+...+.+.+...+.++++.++ .| +...+..+-..+.+.|++++|...|+...+. .|+ ...|..+-.+ |.
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l-----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~--~~ 81 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI-----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAI--YQ 81 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS-----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHCCCCHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH--HH
Confidence 445566666655555444332 23 5667888888999999999999999999875 354 4455555444 79
Q ss_pred ccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC-CHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP-DEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.|++++|+..|++..+-+ | +...|..+-.+|.+.|++++|.+.|+
T Consensus 82 ~~g~~~~Ai~~~~~al~l~---------------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALG---------------------KNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHS---------------------SSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC---------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999997632 3 45667788888888888888887764
No 84
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.19 E-value=1.5e-05 Score=51.40 Aligned_cols=94 Identities=9% Similarity=0.048 Sum_probs=77.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
+...+..+...+.+.|++++|...|++.. ..+...|..+-..+.+.|++++|...|++..+.. | +...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 45567788889999999999999999875 3378889999999999999999999999998753 4 3444544444
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+ |...|++++|.+.|++..+
T Consensus 98 ~--~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 C--LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp H--HHHTTCHHHHHHHHHHHHH
T ss_pred H--HHHcCCHHHHHHHHHHHHH
Confidence 4 7999999999999999864
No 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.18 E-value=1.7e-05 Score=50.45 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=76.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~ 80 (153)
+...+..+...+.+.|++++|...|++.. .| +...|..+-..+.+.|++++|...|+...+.+ |+ ...+..+-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHH
Confidence 44557777888999999999999999875 33 77889999999999999999999999998753 43 344444444
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+ |...|++++|.+.|++..+
T Consensus 95 ~--~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 C--HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp H--HHHTTCHHHHHHHHHHHHH
T ss_pred H--HHHcCCHHHHHHHHHHHHH
Confidence 4 7999999999999999865
No 86
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.17 E-value=7.6e-05 Score=53.15 Aligned_cols=142 Identities=9% Similarity=0.040 Sum_probs=102.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CCh----hH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-PDE----FT 74 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~----~t 74 (153)
+...+..+.+.|++++|..++++... ++ ...+..+...+...+++++|+..+++..+.... ++. ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33447788999999999999998653 12 123445666666778999999999999874322 232 24
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHhccc------C----ChhhHHHHHHHHHhcCCCC----------------CCCCC-
Q 035927 75 IVRILTAYMYCKCGDVEKAQRVLRKMLR------K----DKFTWTAMIVGLAISDPFP----------------TIRPD- 127 (153)
Q Consensus 75 ~~~li~~~~~~~~g~~~~a~~~~~~m~~------~----~~~~~~~li~~~~~~~~~~----------------~~~p~- 127 (153)
++.+-.. |.+.|++++|+..|++..+ . ...+|..+...|.+.|.++ +..+.
T Consensus 158 ~~~lg~~--y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 158 ENAIANI--YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 6666555 7999999999999999862 1 2347788888888888877 22233
Q ss_pred HhHHHHHHHHHhcCCc-hhHhhhhcc
Q 035927 128 EVTYVGVLSACTHNGN-ETFVINSCN 152 (153)
Q Consensus 128 ~~t~~~ll~~~~~~g~-~~~a~~~~~ 152 (153)
...|..+-.++.+.|+ .++|.+.|+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 5678888888999995 588887663
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.15 E-value=4.2e-05 Score=52.44 Aligned_cols=143 Identities=10% Similarity=-0.010 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh----HH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF----TI 75 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~ 75 (153)
...+-.+...+.+.|++++|...|+++.+ |+ ...+..+...+.+.|++++|...|++..+.. |+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34555667788999999999999999863 32 3567788889999999999999999998643 3322 22
Q ss_pred HHHHHHHHHh------------------ccCChHHHHHHHHhcccC---ChhhHH-----------------HHHHHHHh
Q 035927 76 VRILTAYMYC------------------KCGDVEKAQRVLRKMLRK---DKFTWT-----------------AMIVGLAI 117 (153)
Q Consensus 76 ~~li~~~~~~------------------~~g~~~~a~~~~~~m~~~---~~~~~~-----------------~li~~~~~ 117 (153)
-.+-.+ |. ..|+.++|...|+++.+. +...+. .+...+.+
T Consensus 82 ~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 82 YMRGLT--NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHH--HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 23 367899999999999753 233332 23334555
Q ss_pred cCCCC----------CCCCCH----hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 118 SDPFP----------TIRPDE----VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 118 ~~~~~----------~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.|.++ ..-|+. ..+..+..++.+.|+.++|.+.++
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 56665 334543 568889999999999999998764
No 88
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.14 E-value=2.1e-05 Score=52.32 Aligned_cols=130 Identities=13% Similarity=0.022 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC------C---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCC---
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE------R---DYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NIRPD--- 71 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~--- 71 (153)
...+..+-..+...|++++|...+++... . ...+++.+-..+...|++++|...+++..+. ....+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34566666666666776666666665532 1 3345666666666667777777776666432 11101
Q ss_pred -hhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCC-CCHhHHHHHHHHHhcCCchhHhhh
Q 035927 72 -EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIR-PDEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 72 -~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
...+..+-.. |...|++++|.+.+++..+..... +-. .-...+..+-..+...|++++|.+
T Consensus 106 ~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 106 ASANAYEVATV--ALHFGDLAGARQEYEKSLVYAQQA---------------DDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhc---------------cchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 1222333333 566677777766666653210000 000 112446677778888888888877
Q ss_pred hcc
Q 035927 150 SCN 152 (153)
Q Consensus 150 ~~~ 152 (153)
.++
T Consensus 169 ~~~ 171 (203)
T 3gw4_A 169 HWL 171 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 89
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.14 E-value=3.1e-05 Score=50.31 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=80.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...|..+-..+.+.|++++|...|++..+ | +...|..+-..+.+.|++++|+..+++..+.. +-+...+..+-.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3556788899999999999999999998862 3 78899999999999999999999999998764 224556666655
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
. |.+.|++++|.+.|++..+
T Consensus 88 ~--~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 88 A--RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp H--HHHTTCHHHHHHHHHHHHH
T ss_pred H--HHHccCHHHHHHHHHHHHH
Confidence 5 7999999999999999864
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.13 E-value=1.2e-05 Score=55.83 Aligned_cols=132 Identities=11% Similarity=0.043 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS------NI 68 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~ 68 (153)
..++..+...+...|++++|...+++... | ...+|..+...+...|++++|...+++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44577777788888888888877776641 1 3456777777888888888888888877653 11
Q ss_pred CC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC-CHhHHHHHHHHHhcCCchhH
Q 035927 69 RP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP-DEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 69 ~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~ 146 (153)
.| ...++..+... |...|++++|.+.+++..+.-.. ...+-.| ....+..+...+...|++++
T Consensus 123 ~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 123 HPDVAKQLNNLALL--CQNQGKAEEVEYYYRRALEIYAT-------------RLGPDDPNVAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp CHHHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHHHHH-------------HSCTTCHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ChHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHH-------------hcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 12 23444444444 67888888888888777542000 0000123 34678888899999999999
Q ss_pred hhhhcc
Q 035927 147 VINSCN 152 (153)
Q Consensus 147 a~~~~~ 152 (153)
|.+.|+
T Consensus 188 A~~~~~ 193 (283)
T 3edt_B 188 AETLYK 193 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 91
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=3.9e-05 Score=47.48 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=78.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...|..+-..+.+.|++++|...|++.. ..+...|..+-..+.+.|++++|+..+++..+.. +-+...+..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44568888899999999999999999875 2378899999999999999999999999998753 2245555555555
Q ss_pred HHHhccCChHHHHHHHHhccc
Q 035927 82 YMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~ 102 (153)
|.+.|++++|.+.|++..+
T Consensus 82 --~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 --QIAVKEYASALETLDAART 100 (126)
T ss_dssp --HHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHhCHHHHHHHHHHHHH
Confidence 7999999999999999854
No 92
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=3.5e-05 Score=47.21 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=78.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCC----hhHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN--IRPD----EFTIV 76 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~----~~t~~ 76 (153)
...|..+...+.+.|++++|...|++.. ..+...+..+...+...|++++|...++...+.. ..++ ...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4568888999999999999999999875 2377889999999999999999999999997653 1233 55666
Q ss_pred HHHHHHHHhccCChHHHHHHHHhccc
Q 035927 77 RILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 77 ~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+... |.+.|++++|.+.|+...+
T Consensus 84 ~la~~--~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNS--YFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhccHHHHHHHHHHHHH
Confidence 66666 6999999999999999865
No 93
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=0.0001 Score=46.25 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=79.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVR 77 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ 77 (153)
.+...+..+...+.+.|++++|...|++..+ |+ ...|..+...+.+.|++++|...++...+.. +.+...+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4566788999999999999999999998763 44 6788889999999999999999999988653 224555555
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+-.. |.+.|++++|.+.|++..+
T Consensus 105 ~a~~--~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQA--LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHH--HHHHTCHHHHHHHHHHHHH
T ss_pred HHHH--HHHcCCHHHHHHHHHHHHH
Confidence 5555 7999999999999999865
No 94
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.08 E-value=7.3e-05 Score=60.35 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=98.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILT 80 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~ 80 (153)
+...|+.+-.+|.+.|++++|...|++.. .| +...|+.+-..+.+.|++++|++.|++..+. .| +...++.+-.
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~ 119 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLAS 119 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45679999999999999999999999875 34 6789999999999999999999999999875 35 4566777766
Q ss_pred HHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~ 122 (153)
. |.+.|++++|++.|++..+ | +...|..+...+...+.++
T Consensus 120 ~--~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 120 I--HKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred H--HHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 6 7999999999999999854 4 6888999999999998887
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.08 E-value=5.4e-05 Score=50.86 Aligned_cols=117 Identities=12% Similarity=0.012 Sum_probs=87.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------------
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN------------ 67 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------ 67 (153)
+|+...|..+...+.+.|++++|...|++.. ..+...|..+-..+.+.|++++|...++...+..
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 113 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhc
Confidence 4677889999999999999999999999875 3477889999999999999999999999998743
Q ss_pred --CCCCh-hHHHHHHHHHHHhccCChHHHHHHHHhcccC----ChhhHHHHHHHHHhcCCC
Q 035927 68 --IRPDE-FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK----DKFTWTAMIVGLAISDPF 121 (153)
Q Consensus 68 --~~p~~-~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~~~~ 121 (153)
..|+. ..+..+-.. |.+.|++++|.+.|++..+. ........+..+.+...+
T Consensus 114 ~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 114 LQFKLFACEVLYNIAFM--YAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLY 172 (213)
T ss_dssp BCCEEEHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTTCCC
T ss_pred cccCccchHHHHHHHHH--HHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcccc
Confidence 12222 444444444 79999999999999998653 223334444444444433
No 96
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.07 E-value=8.3e-05 Score=57.30 Aligned_cols=144 Identities=6% Similarity=0.091 Sum_probs=107.2
Q ss_pred chhHHHHHHHHHHh-------cCChH-------HHHHHHHhCCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 5 DVISWTDIVSGYIN-------RGQVD-------IARQYFAQMPE---R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 5 d~~~~~~li~~~~~-------~g~~~-------~a~~l~~~m~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
+...|......+.+ .|+++ +|..+|++..+ | +...|..+...+.+.|++++|..+|++..+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 45567777777775 79987 89999998763 4 6788999999999999999999999999984
Q ss_pred CCCCCh--hHHHHHHHHHHHhccCChHHHHHHHHhcccCC---hhhHHHHHHH-HHhcCCCC----------CCCC-CHh
Q 035927 67 NIRPDE--FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD---KFTWTAMIVG-LAISDPFP----------TIRP-DEV 129 (153)
Q Consensus 67 ~~~p~~--~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~-~~~~~~~~----------~~~p-~~~ 129 (153)
.|+. ..|..+... +.+.|++++|.++|++..+.. ...|-..... +...|..+ ...| +..
T Consensus 351 --~p~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~ 426 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKF--ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE 426 (530)
T ss_dssp --SSSCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred --cccCchHHHHHHHHH--HHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHH
Confidence 4542 467777776 588999999999999986532 2222221111 22344444 2335 467
Q ss_pred HHHHHHHHHhcCCchhHhhhhcc
Q 035927 130 TYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 130 t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.|..++..+.+.|+.++|..+|+
T Consensus 427 ~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 427 YVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHH
Confidence 88999999999999999998874
No 97
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.05 E-value=6.2e-05 Score=51.29 Aligned_cols=115 Identities=10% Similarity=0.003 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMI 112 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li 112 (153)
|...|...-..+.+.|++++|...|+...+..-.++...+..+-.. |.+.|++++|++.|++..+ | +...|..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVC--ADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHH--HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 5677888888899999999999999999876543666666664444 7999999999999999864 3 577888899
Q ss_pred HHHHhcCCCC----------CCCCC-H-------hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 113 VGLAISDPFP----------TIRPD-E-------VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 113 ~~~~~~~~~~----------~~~p~-~-------~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+...|.++ ...|+ . ..|..+-..+.+.|++++|.+.|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 9999998888 34454 3 457777788889999999998774
No 98
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.04 E-value=4.8e-05 Score=55.65 Aligned_cols=120 Identities=12% Similarity=0.058 Sum_probs=91.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMP--ER-D---------------YVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
+...|..+-..+.+.|++++|...|++.. .| + ...|..+-..+.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34568888899999999999999999875 23 3 478999999999999999999999999875
Q ss_pred CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhH
Q 035927 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 67 ~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~ 146 (153)
. +.+...+..+-.+ |.+.|++++|++.|++..+.+ +-+...+..+...+.+.|+.++
T Consensus 226 ~-p~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~--------------------P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEA--HLAVNDFELARADFQKVLQLY--------------------PNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp C-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC--------------------SSCHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHC--------------------CCCHHHHHHHHHHHHHHHHHHH
Confidence 3 2356666666666 799999999999999986532 0134455555556666666655
Q ss_pred h
Q 035927 147 V 147 (153)
Q Consensus 147 a 147 (153)
|
T Consensus 283 a 283 (336)
T 1p5q_A 283 R 283 (336)
T ss_dssp H
T ss_pred H
Confidence 5
No 99
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.03 E-value=5.7e-05 Score=44.98 Aligned_cols=96 Identities=9% Similarity=-0.050 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
+...|..+...+.+.|++++|...+++..+.. +.+...+..+-.. |.+.|++++|.+.|++..+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~a~~~~~---------- 71 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKA--LYNLERYEEAVDCYNYVINVIE---------- 71 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTSC----------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhCc----------
Confidence 45667778888899999999999999998753 2345566666665 6999999999999999876430
Q ss_pred HhcCCCCCCCCCHhHHHHHHHHHhcC-CchhHhhhhcc
Q 035927 116 AISDPFPTIRPDEVTYVGVLSACTHN-GNETFVINSCN 152 (153)
Q Consensus 116 ~~~~~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~ 152 (153)
-..+...+..+...+.+. |+.++|.+.++
T Consensus 72 --------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 72 --------DEYNKDVWAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp --------CTTCHHHHHHHHHHHTTCSSCSHHHHHHHH
T ss_pred --------ccchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 011467788888999999 99999988764
No 100
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.02 E-value=7.6e-05 Score=46.76 Aligned_cols=93 Identities=9% Similarity=0.017 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
...+...-..+.+.|++++|++.|++..+.. +.+...|..+-.+ |.+.|++++|++.|++..+-+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~------------ 77 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAAC--LTKLMEFQRALDDCDTCIRLD------------ 77 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhH--HHhhccHHHHHHHHHHHHHhh------------
Confidence 4567778888999999999999999998753 2355556555555 799999999999999987642
Q ss_pred hcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 117 ISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 117 ~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.+...|..+-.++...|++++|.+.|+
T Consensus 78 --------p~~~~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 78 --------SKFIKGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------hhhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1245667777777788888888877663
No 101
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.01 E-value=2.6e-05 Score=57.47 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-Ch
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRP-DE 72 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 72 (153)
.+++.+-..|...|++++|...|++..+ + ...++..+-..+...|++++|...+++..+. +..| ..
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 4688888999999999999999987752 1 2347888999999999999999999998762 3323 34
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcccC-----C---hhhHHHHHHHHHhcCC---CC---------CCCCC-HhHH
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----D---KFTWTAMIVGLAISDP---FP---------TIRPD-EVTY 131 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~-----~---~~~~~~li~~~~~~~~---~~---------~~~p~-~~t~ 131 (153)
.++..+-.. |.+.|++++|.+.+++..+- + ...+..+-..+...+. ++ +..|+ ...+
T Consensus 265 ~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 265 QAYFLITQI--HYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455555555 79999999999999987531 2 2224455555555554 22 33333 3567
Q ss_pred HHHHHHHhcCCchhHhhhhcc
Q 035927 132 VGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 132 ~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+-..|.+.|+.++|.+.|+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 788899999999999998764
No 102
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.01 E-value=4.7e-05 Score=54.36 Aligned_cols=144 Identities=6% Similarity=-0.086 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-Ch
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRP-DE 72 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~ 72 (153)
..|......|...|++++|...|.+... + ...+|+.+-..|.+.|++++|+..+++..+. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455555566666666555555544421 1 2566666666666666666666655555432 1100 02
Q ss_pred hHHHHHHHHHHHhcc-CChHHHHHHHHhcccC-----C----hhhHHHHHHHHHhcCCCC----------CCCCCH----
Q 035927 73 FTIVRILTAYMYCKC-GDVEKAQRVLRKMLRK-----D----KFTWTAMIVGLAISDPFP----------TIRPDE---- 128 (153)
Q Consensus 73 ~t~~~li~~~~~~~~-g~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~~~~~----------~~~p~~---- 128 (153)
.+++.+-.. |.+. |++++|+..|++..+- + ..+|+.+...+...|.++ .+.|+.
T Consensus 118 ~~~~~lg~~--~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 118 NFKFELGEI--LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHH--HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHH--HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 234444443 4553 6666666666555321 1 234555555555555554 122221
Q ss_pred ----hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 129 ----VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 129 ----~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..|..+..++...|+.++|.+.|+
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 145566666777777777776653
No 103
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.99 E-value=2.5e-05 Score=57.21 Aligned_cols=114 Identities=10% Similarity=0.072 Sum_probs=63.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC-h
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--R-D----YVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRPD-E 72 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~ 72 (153)
....+...-..+.+.|++++|...|++..+ | + ...|..+...+...|++++|...+++..+. +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777766542 2 2 245666666666777777777777665332 22222 2
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcccC-----C----hhhHHHHHHHHHhcCC
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----D----KFTWTAMIVGLAISDP 120 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~~~ 120 (153)
..+..+-.. |...|++++|...+++..+- + ...+..+...+...|.
T Consensus 88 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 88 KASGNLGNT--LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 233333333 56677777777766665321 1 2345555555555554
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.97 E-value=0.00012 Score=47.11 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAY 82 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~ 82 (153)
..+-.+-..|.+.|++++|.+.|++.. .| +...|..+-..+.+.|++++|...|+...+. .| +...+..+-..
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~- 108 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAEL- 108 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHH-
Confidence 345678889999999999999999886 34 7889999999999999999999999999875 35 45666666666
Q ss_pred HHhccCChHHHHHH-HHhccc--C-ChhhHHHHHH
Q 035927 83 MYCKCGDVEKAQRV-LRKMLR--K-DKFTWTAMIV 113 (153)
Q Consensus 83 ~~~~~g~~~~a~~~-~~~m~~--~-~~~~~~~li~ 113 (153)
|.+.|+.++|.+. +++..+ | +...|.....
T Consensus 109 -~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 109 -LCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp -HHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred -HHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 6999999876665 466643 3 4444444433
No 105
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.96 E-value=0.00011 Score=45.22 Aligned_cols=93 Identities=11% Similarity=0.042 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
+...|..+...+.+.|++++|...+++..+.. +.+...+..+... |.+.|++++|++.+++..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~--~~~~~~~~~A~~~~~~a~~~~----------- 80 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAAC--YTKLLEFQLALKDCEECIQLE----------- 80 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHH--HTTTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH--HHHhccHHHHHHHHHHHHHhC-----------
Confidence 56788999999999999999999999998753 2355666666665 699999999999999986532
Q ss_pred HhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 116 AISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 116 ~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+...+.+.|++++|.+.|
T Consensus 81 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (133)
T 2lni_A 81 ---------PTFIKGYTRKAAALEAMKDYTKAMDVY 107 (133)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------CCchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 123455556666666666666666554
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.95 E-value=5.2e-05 Score=60.64 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=106.3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li 79 (153)
.+...+..+...+.+.|++++|...|++..+ .+...|..+-..+.+.|++++|...|++..+.. | +...+..+-
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg 508 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALA 508 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 4556788889999999999999999998873 377889999999999999999999999998753 5 344555555
Q ss_pred HHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCCc
Q 035927 80 TAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNGN 143 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g~ 143 (153)
.. |.+.|++++ ++.|++..+ | +...|..+..++.+.|.++ ...|+. ..+..+..++...|.
T Consensus 509 ~~--~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 509 AT--AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HH--HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HH--HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 54 799999999 999999854 3 6788999999999998887 566764 567777777766554
No 107
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.94 E-value=0.00034 Score=49.83 Aligned_cols=95 Identities=12% Similarity=-0.006 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhc-CChHHHHHHHHhCCC--C---C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh---
Q 035927 7 ISWTDIVSGYINR-GQVDIARQYFAQMPE--R---D----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF--- 73 (153)
Q Consensus 7 ~~~~~li~~~~~~-g~~~~a~~l~~~m~~--~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--- 73 (153)
.+++.+-..|.+. |++++|...|++..+ | + ..+|+.+...+.+.|++++|...|++..+........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 4677888888886 999999988887653 1 1 3568888889999999999999999988754322221
Q ss_pred ---HHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 74 ---TIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 74 ---t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
.+..+... |.+.|++++|...|++..+-
T Consensus 198 ~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 198 LKDYFLKKGLC--QLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHH--HHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh
Confidence 34444444 68899999999999998653
No 108
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.94 E-value=7.7e-05 Score=47.37 Aligned_cols=93 Identities=10% Similarity=-0.046 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 114 (153)
+...+..+-..+.+.|++++|...|+...+. .| +...|..+-.. |.+.|++++|...|++..+.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~---------- 82 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGAC--RQSLGLYEQALQSYSYGALMD---------- 82 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHH--HHHHhhHHHHHHHHHHHHhcC----------
Confidence 4456677778888999999999999999875 35 44445444444 799999999999999987632
Q ss_pred HHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 115 LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 115 ~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+-+...+..+-.++...|++++|.+.|+
T Consensus 83 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 83 ----------INEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp ----------TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1134556666777777777777776653
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.94 E-value=7.6e-05 Score=48.06 Aligned_cols=93 Identities=8% Similarity=-0.038 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
+...+..+-..+.+.|++++|...|+...+.. +.+...+..+-.+ |.+.|++++|++.|++..+-+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~l~----------- 85 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGAC--RQAMGQYDLAIHSYSYGAVMD----------- 85 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHS-----------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHH--HHHHhhHHHHHHHHHHHHhcC-----------
Confidence 55677888888999999999999999998653 2355555555444 799999999999999987532
Q ss_pred HhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 116 AISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 116 ~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-+...+..+-.++...|+.++|.+.|
T Consensus 86 ---------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 112 (148)
T 2vgx_A 86 ---------IXEPRFPFHAAECLLQXGELAEAESGL 112 (148)
T ss_dssp ---------TTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 013455666666666777777766655
No 110
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.92 E-value=6.8e-05 Score=53.39 Aligned_cols=142 Identities=9% Similarity=0.021 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC---CC------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CCC--hh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE---RD------YVLWTAMIDGYLRVNRFREALTLFPEMQTSNI---RPD--EF 73 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~---~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 73 (153)
.+...+..+...|++++|.+.+.+..+ .+ ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455667788899999999998875431 11 12344455666778899999999998875321 121 33
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhccc-----CC-----hhhHHHHHHHHHhcCCCC----------CCCCC------
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KD-----KFTWTAMIVGLAISDPFP----------TIRPD------ 127 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~-----~~-----~~~~~~li~~~~~~~~~~----------~~~p~------ 127 (153)
+++.+-.. |...|++++|+..|++..+ ++ ..+|+.+...|...|.++ .+.++
T Consensus 157 ~~~~lg~~--y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 157 IENAIANI--YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 55555555 7999999999999988751 22 257888888888888877 11121
Q ss_pred -HhHHHHHHHHHhcCCchhHh-hhhc
Q 035927 128 -EVTYVGVLSACTHNGNETFV-INSC 151 (153)
Q Consensus 128 -~~t~~~ll~~~~~~g~~~~a-~~~~ 151 (153)
...|..+-..|.+.|+.++| .+.|
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 56788888899999999998 5544
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.92 E-value=7.5e-05 Score=58.07 Aligned_cols=111 Identities=9% Similarity=0.005 Sum_probs=75.7
Q ss_pred cCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 19 RGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
.|++++|...|++..+ | +...|..+-..+.+.|++++|.+.+++..+.. +-+...+..+-.. |.+.|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~--~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRV--RWTQQRHAEAAV 78 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHH--HHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHHCCCHHHHHH
Confidence 4788999999998863 3 67889999999999999999999999998753 2345566666665 799999999999
Q ss_pred HHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 96 VLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 96 ~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+++..+.+ +-+...+..+...+.+.|+.++|.+.|+
T Consensus 79 ~~~~al~~~--------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 79 LLQQASDAA--------------------PEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcC--------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999987642 1245678888888889999999887764
No 112
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=6.1e-05 Score=46.82 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAY 82 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~ 82 (153)
..+-.+...+.+.|++++|...|++.. .| +...|..+-..+.+.|++++|+..+++..+.. | +...+..+-..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~- 94 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVS- 94 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH-
Confidence 346667788999999999999999986 34 78889999999999999999999999998753 5 44455555555
Q ss_pred HHhccCChHHHHHHHHhcccC
Q 035927 83 MYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~ 103 (153)
|.+.|++++|+..|++..+.
T Consensus 95 -~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 95 -HTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHC-
T ss_pred -HHHcCCHHHHHHHHHHHHHh
Confidence 79999999999999998764
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.91 E-value=0.00046 Score=45.05 Aligned_cols=96 Identities=8% Similarity=0.163 Sum_probs=75.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHH-HHhcCCh--HHHHHHHHHHhhCCCCCChhHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDG-YLRVNRF--REALTLFPEMQTSNIRPDEFTIVR 77 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~-~~~~~~~--~~a~~~~~~m~~~~~~p~~~t~~~ 77 (153)
.+...|..+...+...|++++|...|++..+ .+...+..+... +.+.|++ ++|...++...+.. +-+...+..
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 120 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALML 120 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4567788899999999999999999998763 367778888887 7788988 99999999988753 123455555
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+... |.+.|++++|...|++..+
T Consensus 121 la~~--~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 121 LASD--AFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHH--HHHcccHHHHHHHHHHHHh
Confidence 5555 6899999999999999865
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.91 E-value=2.9e-05 Score=50.91 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=74.8
Q ss_pred HhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh--H
Q 035927 17 INRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV--E 91 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~--~ 91 (153)
...|++++|...+++.. ..+...|..+...+...|++++|...+++..+.. +.+...+..+...+ |.+.|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l-~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVL-YYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHH-HHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH-HHhcCCcchH
Confidence 35677788888777654 3477889999999999999999999999998653 22455555555552 4688998 9
Q ss_pred HHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 92 KAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 92 ~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+|...|++..+.+ +-+...+..+...+...|++++|.+.|
T Consensus 99 ~A~~~~~~al~~~--------------------p~~~~~~~~la~~~~~~g~~~~A~~~~ 138 (177)
T 2e2e_A 99 QTRAMIDKALALD--------------------SNEITALMLLASDAFMQANYAQAIELW 138 (177)
T ss_dssp HHHHHHHHHHHHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------------------CCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence 9999999986532 012344445555555555555555544
No 115
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.91 E-value=0.00011 Score=53.53 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=71.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-----CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChh
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--R-----DYVLWTAMIDGYLR----VNRFREALTLFPEMQTSNIRPDEF 73 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-----~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 73 (153)
+...+-.++..+.+.|+++.|.+.+++|.+ | +-.+...|..+.+. .++..+|..+|+++.+. .|+..
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~ 212 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWK 212 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcc
Confidence 456678899999999999999999999974 4 24566666666332 34899999999998764 35544
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+-..++.+ +.+.|++++|++.++.+.+
T Consensus 213 ~~~lLln~--~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 213 TQLGLLNL--HLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHH--HHHHTCHHHHHHHHHHHHS
T ss_pred cHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 44555554 7999999999999987654
No 116
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.91 E-value=0.00014 Score=53.59 Aligned_cols=139 Identities=9% Similarity=0.012 Sum_probs=102.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CC---CCC-hhHHH
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS--NI---RPD-EFTIV 76 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~---~p~-~~t~~ 76 (153)
.-..+...|++++|...|++..+ + ...+|..+-..+...|++++|...+++..+. .. .|. ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44567788999999999988753 2 3467888889999999999999999888643 11 122 23444
Q ss_pred HHHHHHHHhccCChHHHHHHHHhcccC-----C----hhhHHHHHHHHHhcCCCC----------------CCCCC-HhH
Q 035927 77 RILTAYMYCKCGDVEKAQRVLRKMLRK-----D----KFTWTAMIVGLAISDPFP----------------TIRPD-EVT 130 (153)
Q Consensus 77 ~li~~~~~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~~~~~----------------~~~p~-~~t 130 (153)
.+-.. |...|++++|++.|++..+- + ..++..+...|...|.++ +..|+ ..+
T Consensus 189 ~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 189 LFATN--FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHH--HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 44444 79999999999999887531 1 347888888888888877 22143 466
Q ss_pred HHHHHHHHhcCCchhHhhhhcc
Q 035927 131 YVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 131 ~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+..+...+.+.|+.++|.+.|+
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 8888899999999999988764
No 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.90 E-value=0.00017 Score=44.81 Aligned_cols=95 Identities=13% Similarity=-0.031 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHH
Q 035927 34 ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113 (153)
Q Consensus 34 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~ 113 (153)
..+...|..+-..+.+.|++++|...|+...+.. +.+...+..+-.. |.+.|++++|...+++..+.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~~~--------- 73 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALC--YLKMQQPEQALADCRRALELD--------- 73 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC---------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhC---------
Confidence 3467889999999999999999999999988753 2244555555555 799999999999999987632
Q ss_pred HHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 114 GLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 114 ~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-+...+..+...+...|++++|.+.|
T Consensus 74 -----------p~~~~~~~~l~~~~~~~~~~~~A~~~~ 100 (137)
T 3q49_B 74 -----------GQSVKAHFFLGQCQLEMESYDEAIANL 100 (137)
T ss_dssp -----------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----------chhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 113455666666777777777776655
No 118
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.90 E-value=0.00015 Score=44.78 Aligned_cols=93 Identities=14% Similarity=0.038 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
...|..+-..+.+.|++++|...|++..+.. +.+...+..+-.+ |.+.|++++|+..|++..+.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~~~------------ 68 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAA--LAKLMSFPEAIADCNKAIEKD------------ 68 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhC------------
Confidence 4567778888899999999999999998753 2345566666555 799999999999999987642
Q ss_pred hcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 117 ISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 117 ~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+-+...|..+-.++...|++++|.+.|+
T Consensus 69 --------p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 96 (126)
T 3upv_A 69 --------PNFVRAYIRKATAQIAVKEYASALETLD 96 (126)
T ss_dssp --------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 1145567777777777888877776653
No 119
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.89 E-value=2.6e-05 Score=57.55 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--C-CH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-ChhHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--R-DY----VLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRP-DEFTIV 76 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~t~~ 76 (153)
+..+-..+.+.|++++|...|++..+ | +. ..|..+...+...|++++|...+++..+. +-.| ....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 44555667777888888888777652 2 22 46777777777778888888877776542 2122 223333
Q ss_pred HHHHHHHHhccCChHHHHHHHHhcccC---------ChhhHHHHHHHHHhcCC
Q 035927 77 RILTAYMYCKCGDVEKAQRVLRKMLRK---------DKFTWTAMIVGLAISDP 120 (153)
Q Consensus 77 ~li~~~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~ 120 (153)
.+-.. |...|++++|.+.+++..+. ....+..+...+...|.
T Consensus 131 ~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 131 NLGNT--LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 33333 67777877777777776321 23355556666665555
No 120
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.89 E-value=0.00023 Score=61.07 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=94.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-------------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE-------------------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~-------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
+-..+...|++++|..+|++... .+..+|..+-.++.+.|++++|.+-|.+-
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 44455555666666666655542 25667889999999999999999998553
Q ss_pred CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC--ChhhHHHHHHHHHhcCCCC-----CCCCCHhHHHHHHHHHh
Q 035927 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISDPFP-----TIRPDEVTYVGVLSACT 139 (153)
Q Consensus 67 ~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~-----~~~p~~~t~~~ll~~~~ 139 (153)
-|...|.-++.. +.+.|++++|.+.+...++. +....+.++.+|++.+.++ --.|+...|..+-..|.
T Consensus 1132 ---dD~say~eVa~~--~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le 1206 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQA--ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCY 1206 (1630)
T ss_pred ---CChHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 466778888888 59999999999999876543 3334556888888886666 12355566667777777
Q ss_pred cCCchhHhhhhcc
Q 035927 140 HNGNETFVINSCN 152 (153)
Q Consensus 140 ~~g~~~~a~~~~~ 152 (153)
..|++++|..+|.
T Consensus 1207 ~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1207 DEKMYDAAKLLYN 1219 (1630)
T ss_pred hcCCHHHHHHHHH
Confidence 7777777777664
No 121
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.86 E-value=6.3e-05 Score=57.73 Aligned_cols=120 Identities=13% Similarity=0.100 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHh
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYC 85 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~ 85 (153)
+..+-..+.+.|++++|.+.|++.. ..+...|..+-..+.+.|++++|+..+++..+.. +-+...+..+-.+ |.
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~--~~ 85 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS--NM 85 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HH
Confidence 3344455678899999999999875 2368899999999999999999999999998763 2345566666555 79
Q ss_pred ccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC-CHhHHHHHHHH--HhcCCchhHhhhhcc
Q 035927 86 KCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP-DEVTYVGVLSA--CTHNGNETFVINSCN 152 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p-~~~t~~~ll~~--~~~~g~~~~a~~~~~ 152 (153)
+.|++++|++.|++..+.+ | +...+..+-.+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK---------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS---------------------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999986532 2 22233333333 667788888777654
No 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.84 E-value=0.0002 Score=42.86 Aligned_cols=93 Identities=16% Similarity=0.031 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
+...+..+...+...|++++|...++...+.. +.+...+..+... |.+.|++++|...+++..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~~~~~~----------- 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAA--YAKKGDYQKAYEDGCKTVDLK----------- 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHC-----------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHH--HHhhccHHHHHHHHHHHHHhC-----------
Confidence 34567888888999999999999999998753 2355566666665 699999999999999986532
Q ss_pred HhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 116 AISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 116 ~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+...+...|+.++|.+.|
T Consensus 69 ---------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 95 (118)
T 1elw_A 69 ---------PDWGKGYSRKAAALEFLNRFEEAKRTY 95 (118)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 113455666666666667766666654
No 123
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.84 E-value=3.1e-05 Score=57.18 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQM 32 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m 32 (153)
+..+...+...|++++|...+++.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444555555555555554443
No 124
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.84 E-value=9.6e-05 Score=45.16 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
...|..+...+...|++++|...++...+.. +.+...+..+... |.+.|++++|...+++..+.+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~---------- 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAV--YFEKGDYNKCRELCEKAIEVGRE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHH--HHHhccHHHHHHHHHHHHhhccc----------
Confidence 4567888888999999999999999998754 2355566666665 69999999999999998653210
Q ss_pred hcCCCCCCCCC----HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 117 ISDPFPTIRPD----EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 117 ~~~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..++ ...+..+...+.+.|++++|.+.|+
T Consensus 71 -------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 103 (131)
T 1elr_A 71 -------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103 (131)
T ss_dssp -------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1122 5667788888888899988887764
No 125
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.84 E-value=0.00015 Score=46.94 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 114 (153)
+...|..+-..+.+.|++++|+..|++..+.. | +...+..+-.. |.+.|++++|+..|++..+.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~---------- 75 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAA--YSASGQHEKAAEDAELATVVD---------- 75 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhC----------
Confidence 55678888899999999999999999998753 4 45555555555 799999999999999997642
Q ss_pred HHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 115 LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 115 ~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-+...|..+-..+.+.|++++|.+.|
T Consensus 76 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 102 (164)
T 3sz7_A 76 ----------PKYSKAWSRLGLARFDMADYKGAKEAY 102 (164)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 013455666666666667766666655
No 126
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.82 E-value=0.00016 Score=53.27 Aligned_cols=137 Identities=9% Similarity=0.020 Sum_probs=98.5
Q ss_pred HHHHhcCChHHHHHHHHhCCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCC-hhHHHHH
Q 035927 14 SGYINRGQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----N-IRPD-EFTIVRI 78 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~-~~p~-~~t~~~l 78 (153)
..+...|++++|...|++..+ + ...++..+-..+...|++++|...+++..+. + ..+. ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345678999999999987653 2 3457888888888999999999999887642 1 1222 2333444
Q ss_pred HHHHHHhccCChHHHHHHHHhccc-----C----ChhhHHHHHHHHHhcCCCC----------C-----CCCC-HhHHHH
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR-----K----DKFTWTAMIVGLAISDPFP----------T-----IRPD-EVTYVG 133 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~~~~~----------~-----~~p~-~~t~~~ 133 (153)
-.. |.+.|++++|.+.|++..+ . ...+++.+...|...|.++ . ..|+ ..++..
T Consensus 189 g~~--y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 189 AGN--YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHH--HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 443 7999999999999888743 1 2346777778888887777 1 2343 466888
Q ss_pred HHHHHhcCCchhHhhhhcc
Q 035927 134 VLSACTHNGNETFVINSCN 152 (153)
Q Consensus 134 ll~~~~~~g~~~~a~~~~~ 152 (153)
+...+.+.|+.++|.+.++
T Consensus 267 la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 8889999999999988764
No 127
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.82 E-value=9.9e-05 Score=46.63 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC-----C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC-h
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER-----D----YVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRPD-E 72 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~ 72 (153)
.++..+-..+...|++++|...+++.... + ..++..+-..+...|++++|...+++..+. +-.+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46788888999999999999999887531 1 247888888999999999999999998643 11111 2
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC-CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP-DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
..+..+-.. |...|++++|.+.+++..+..... +-.+ ....+..+...+...|+.++|.+.+
T Consensus 90 ~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 90 QSCYSLGNT--YTLLQDYEKAIDYHLKHLAIAQEL---------------KDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHc---------------cchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 344444444 789999999999999875420000 0111 2356777888888999999998776
Q ss_pred c
Q 035927 152 N 152 (153)
Q Consensus 152 ~ 152 (153)
+
T Consensus 153 ~ 153 (164)
T 3ro3_A 153 E 153 (164)
T ss_dssp H
T ss_pred H
Confidence 3
No 128
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.82 E-value=5.2e-05 Score=53.67 Aligned_cols=53 Identities=11% Similarity=0.226 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC--C-C----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPE--R-D----YVLWTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~--~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
..-..+.+.|++++|..+|++..+ | + ...+..+...+...|++++|...+++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 69 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD 69 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334445555555555555555431 1 1 234455555555555555555555544
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.82 E-value=0.00073 Score=45.89 Aligned_cols=143 Identities=11% Similarity=0.042 Sum_probs=105.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-CHHHHHHHHHHHHhcC----ChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER-DYVLWTAMIDGYLRVN----RFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
-|...+..+-..|.+.+++++|.+.|++..+. +...+..|-..|.. + ++++|...|+...+.| +...+..+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~L 91 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVL 91 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 35667888888899999999999999987643 67778888887777 6 8999999999998765 34455555
Q ss_pred HHHHHHhc----cCChHHHHHHHHhcccCC-----hhhHHHHHHHHHhc----CCCC----------CCCCCHhHHHHHH
Q 035927 79 LTAYMYCK----CGDVEKAQRVLRKMLRKD-----KFTWTAMIVGLAIS----DPFP----------TIRPDEVTYVGVL 135 (153)
Q Consensus 79 i~~~~~~~----~g~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~----~~~~----------~~~p~~~t~~~ll 135 (153)
-.. |.. .++.++|.+.|++..+.+ ...+..+-..|... ++++ ...++...+..+-
T Consensus 92 g~~--y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 92 ARV--LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHH--HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHH--HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 554 566 789999999999997753 57788887777773 2222 2234555666666
Q ss_pred HHHhcC-C-----chhHhhhhcc
Q 035927 136 SACTHN-G-----NETFVINSCN 152 (153)
Q Consensus 136 ~~~~~~-g-----~~~~a~~~~~ 152 (153)
..|... | +.++|.+.|+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCHHHHHHHHH
Confidence 666643 3 7888888764
No 130
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.81 E-value=0.00012 Score=53.82 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCCh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRPDE 72 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~ 72 (153)
..+++.+-..|...|++++|.+.|++..+ + ...+++.+-..+...|++++|...+++..+. +.+...
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 34678889999999999999998887652 1 2457888888999999999999999998761 222235
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcccC-----C---hhhHHHHHHHHHhcCC---CC---------CCCCCH-hHH
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK-----D---KFTWTAMIVGLAISDP---FP---------TIRPDE-VTY 131 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~-----~---~~~~~~li~~~~~~~~---~~---------~~~p~~-~t~ 131 (153)
.++..+-.. |.+.|++++|...+++..+- + ...++.+-..+...+. +. +..|+. ..+
T Consensus 262 ~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 262 KVLFGLSWT--LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH--HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence 556666665 79999999999999987431 1 2233333333333333 11 222333 456
Q ss_pred HHHHHHHhcCCchhHhhhhcc
Q 035927 132 VGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 132 ~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+...|...|+.++|.+.|+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 778888999999999998774
No 131
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.81 E-value=2.4e-05 Score=55.47 Aligned_cols=68 Identities=12% Similarity=0.046 Sum_probs=35.2
Q ss_pred HhccCChHHHHHHHHhcccC-----C----hhhHHHHHHHHHhcCCCC----------CCC---CC----HhHHHHHHHH
Q 035927 84 YCKCGDVEKAQRVLRKMLRK-----D----KFTWTAMIVGLAISDPFP----------TIR---PD----EVTYVGVLSA 137 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~~~~~----------~~~---p~----~~t~~~ll~~ 137 (153)
|...|++++|.+.+++..+. + ...+..+...+...|.++ .+. ++ ..++..+...
T Consensus 193 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (338)
T 3ro2_A 193 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 272 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 45666666666666655321 1 224555555555555554 000 11 3445555666
Q ss_pred HhcCCchhHhhhhc
Q 035927 138 CTHNGNETFVINSC 151 (153)
Q Consensus 138 ~~~~g~~~~a~~~~ 151 (153)
+...|++++|.+.+
T Consensus 273 ~~~~g~~~~A~~~~ 286 (338)
T 3ro2_A 273 YTLLQDYEKAIDYH 286 (338)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhcCHHHHHHHH
Confidence 66666666666554
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.81 E-value=0.00021 Score=44.70 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCh----hHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN--IRPDE----FTIVR 77 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~----~t~~~ 77 (153)
..+..+-..+.+.|++++|++.|++.. ..+...|+.+-..+.+.|++++|+..+++.++.+ ..++. .+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 357788899999999999999999875 3378889999999999999999999999987532 22222 23444
Q ss_pred HHHHHHHhccCChHHHHHHHHhccc
Q 035927 78 ILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 78 li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+-.. |...|++++|++.|++..+
T Consensus 89 lg~~--~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNA--FQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHH--HHHcCCHHHHHHHHHHHHh
Confidence 4444 6899999999999998754
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.81 E-value=0.00026 Score=43.07 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMI 112 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li 112 (153)
+...+..+...+...|++++|...+++..+.. +.+...+..+... |...|++++|.+.+++..+. +...|..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAA--YSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH--HHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45678888889999999999999999998653 2355666666665 69999999999999998652 344555555
Q ss_pred HHHHhcCCCC
Q 035927 113 VGLAISDPFP 122 (153)
Q Consensus 113 ~~~~~~~~~~ 122 (153)
..+...+.++
T Consensus 88 ~~~~~~~~~~ 97 (131)
T 2vyi_A 88 LALSSLNKHV 97 (131)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHhCCHH
Confidence 5555555444
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.80 E-value=8.9e-05 Score=53.29 Aligned_cols=142 Identities=11% Similarity=0.057 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-Chh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-------R--DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRP-DEF 73 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~ 73 (153)
.|+.....|...|++++|...|.+... + -..+|+.+...|.+.|++++|...+++..+. |-.. -..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577777778888888888877776542 1 1347788888888888888888888876532 2111 123
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhcccC---------ChhhHHHHHHHHHhcCCCC----------CC------CCC-
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLRK---------DKFTWTAMIVGLAISDPFP----------TI------RPD- 127 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~~~----------~~------~p~- 127 (153)
+++.+-.. |.+ |++++|+..|++..+- -..+++.+...+...|.++ .+ .+.
T Consensus 118 ~~~~lg~~--~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 194 (307)
T 2ifu_A 118 ALDRAGKL--MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC 194 (307)
T ss_dssp HHHHHHHH--HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHH--HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence 45555554 566 8888888888877431 1456777777777777766 11 111
Q ss_pred HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 128 EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 128 ~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
...+..+...+...|+.++|.+.|+
T Consensus 195 ~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 195 YKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1256666667777788888887664
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.78 E-value=0.00033 Score=50.28 Aligned_cols=121 Identities=12% Similarity=0.019 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh---hHHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE---FTIVRILTAYM 83 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~~~ 83 (153)
+-.....+...|++++|.++|+.+. .|+....-.+-..+.+.+++++|+..|+...+. |+. .-....+.. .
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~-a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGV-A 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHH-H
Confidence 4556778889999999999999997 343335555555777899999999999855443 222 112233333 2
Q ss_pred HhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC--HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 84 YCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD--EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.+.|++++|+..|++...- ...|. .......-.++.+.|+.++|..+|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g-------------------~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDS-------------------PAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTS-------------------TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcC-------------------CCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 79999999999999998643 12243 3355667777788999999988774
No 136
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.78 E-value=4.6e-05 Score=55.77 Aligned_cols=21 Identities=10% Similarity=-0.064 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCCchhHhhhh
Q 035927 130 TYVGVLSACTHNGNETFVINS 150 (153)
Q Consensus 130 t~~~ll~~~~~~g~~~~a~~~ 150 (153)
++..+...+...|++++|.+.
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHH
Confidence 344444444455555554443
No 137
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.0003 Score=43.19 Aligned_cols=90 Identities=17% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--C-CH---HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----hhHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--R-DY---VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD----EFTIVRI 78 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~l 78 (153)
+-.+...+.+.|++++|...|++..+ | +. ..+..+-..+.+.|++++|...++...+.. |+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence 34566778899999999999998763 4 33 477888888999999999999999998753 43 3444444
Q ss_pred HHHHHHhccCChHHHHHHHHhccc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
-.. |.+.|++++|.+.|+.+.+
T Consensus 83 a~~--~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 83 GLS--QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHH--HHHcCCHHHHHHHHHHHHH
Confidence 444 7999999999999999965
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.76 E-value=0.00056 Score=48.59 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=79.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...+..+...+.+.|++++|...|++.. .| +...|..+-..+.+.|++++|...+++..+.. +-+...+..+-.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456678889999999999999999999875 34 78889999999999999999999999988753 234556666655
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+ |.+.|++++|++.|++..+
T Consensus 81 ~--~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 C--QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp H--HHHTTCHHHHHHHHHHHHH
T ss_pred H--HHHcCCHHHHHHHHHHHHH
Confidence 5 7999999999999998753
No 139
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=0.00049 Score=43.02 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD----EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAM 111 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~l 111 (153)
+...+..+...+.+.|++++|...|++..+. .|+ ...+..+... |.+.|++++|++.+++..+.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~~~~~~------- 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAAC--HLKLEDYDKAETEASKAIEKD------- 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHH--HHHHccHHHHHHHHHHHHhhC-------
Confidence 6778899999999999999999999999875 465 4555555555 799999999999999986532
Q ss_pred HHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 112 IVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 112 i~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+.+...+..+...+...|+.++|.+.|
T Consensus 96 -------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 122 (148)
T 2dba_A 96 -------------GGDVKALYRRSQALEKLGRLDQAVLDL 122 (148)
T ss_dssp -------------SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred -------------ccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 113444555555666666666665554
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.73 E-value=0.00015 Score=45.36 Aligned_cols=95 Identities=8% Similarity=0.059 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGL 115 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~ 115 (153)
...+..+-..+.+.|++++|+..|++.++. .|+ ...|..+-.+ |.+.|++++|++.|++..+-+..
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~--~~~~~~~~~A~~~~~~al~~~~~--------- 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAV--YFEEKKFAECVQFCEKAVEVGRE--------- 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHH--HHHhhhHHHHHHHHHHHHHhCcc---------
Confidence 356778888999999999999999999875 354 4455554444 79999999999999998653210
Q ss_pred HhcCCCCCCCCC----HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 116 AISDPFPTIRPD----EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 116 ~~~~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..++ ...|..+-.++...|++++|++.|+
T Consensus 75 --------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 75 --------TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111 2356677778888899999888764
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.71 E-value=0.00041 Score=46.32 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---CCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE---RDY----------------VLWTAMIDGYLRVNRFREALTLFPEMQTSN 67 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (153)
..+..+-..+.+.|++++|...|++..+ .+. ..|..+-..+.+.|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567777888899999999999987652 122 678888888889999999999999988753
Q ss_pred CCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 68 IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 68 ~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+.+...+..+-.+ |.+.|++++|.+.|++..+
T Consensus 119 -p~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 -KNNVKALYKLGVA--NMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp -TTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHH--HHHcccHHHHHHHHHHHHH
Confidence 2345555555555 6999999999999998854
No 142
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00031 Score=41.90 Aligned_cols=62 Identities=16% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..|..+-..+.+.|++++|...+++..+.. +.+...+..+-.+ |.+.|++++|++.+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMA--LIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH
Confidence 445555556666666666666666665432 1133333333333 5666666666666666644
No 143
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.64 E-value=0.00048 Score=42.28 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh----HHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 41 TAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF----TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 41 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
..+...+.+.|++++|...|+...+.. |+.. .+..+-.. |.+.|++++|...|++..+.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~--~~~~~~~~~A~~~~~~~~~~~------------ 69 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGES--YYATRNFQLAEAQFRDLVSRY------------ 69 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHC------------
Confidence 345566778999999999999998753 3322 44444444 799999999999999987532
Q ss_pred hcCCCCCCCCC----HhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 117 ISDPFPTIRPD----EVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 117 ~~~~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|+ ...+..+..++.+.|+.++|.+.|+
T Consensus 70 ---------p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 70 ---------PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQ 100 (129)
T ss_dssp ---------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------CCCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22 3456666677777788777776653
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.64 E-value=0.00029 Score=43.66 Aligned_cols=89 Identities=16% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHh
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAI 117 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 117 (153)
.+..+-..+.+.|++++|...++...+. .| +...+..+-.. +.+.|++++|+..|++..+.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l~------------- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLT--QAENEKDGLAIIALNHARMLD------------- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC-------------
Confidence 4556667788999999999999999875 35 44445444444 799999999999999987643
Q ss_pred cCCCCCCCC-CHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 118 SDPFPTIRP-DEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 118 ~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
| +...+..+..++.+.|+.++|.+.|+
T Consensus 82 --------P~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (121)
T 1hxi_A 82 --------PKDIAVHAALAVSHTNEHNANAALASLR 109 (121)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 45677888888889999999887764
No 145
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.63 E-value=0.002 Score=48.32 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-----------C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C-
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP-----------E-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-----N- 67 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~-----------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~- 67 (153)
...||.|-..+...|+.++|++.|++-. . ....+|+.+-..|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4568999999999999999999887642 1 24578999999999999999999988877542 1
Q ss_pred CCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHH
Q 035927 68 IRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVG 114 (153)
Q Consensus 68 ~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~ 114 (153)
..++ ..++...-.++.....++.++|++.|++..+ | +...+..+...
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1222 2334333223112334568888888888743 3 34444444433
No 146
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.63 E-value=0.00077 Score=42.97 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=74.6
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+...+..+...+.+.|++++|...+++.. ..+...|..+...+.+.|++++|...+++..+..- .+...+..+-.
T Consensus 45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~ 123 (166)
T 1a17_A 45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQE 123 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 456778899999999999999999998875 23678899999999999999999999999986531 23333322222
Q ss_pred HHHHhccCChHHHHHHHHhcc
Q 035927 81 AYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+..+.+.|++++|++.+....
T Consensus 124 ~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 124 CNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccchH
Confidence 212477899999999988763
No 147
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.62 E-value=0.0009 Score=50.96 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--C-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--R-D---------------YVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
..|..+-..+.+.|++++|...|++..+ | + ...|..+-.++.+.|++++|+..+++.++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 4577888899999999999999998752 2 3 5789999999999999999999999998753
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 69 ~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+-+...+..+-.+ |.+.|++++|+..|++..+-
T Consensus 348 p~~~~a~~~~g~a--~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEA--QLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHH--HHHccCHHHHHHHHHHHHHh
Confidence 2356666666666 69999999999999999764
No 148
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0001 Score=44.07 Aligned_cols=93 Identities=10% Similarity=0.104 Sum_probs=69.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-------h
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE-------F 73 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~ 73 (153)
++...|..+-..+.+.|++++|...|++.. ..+...|..+-..+.+.|++++|+..+++..+. .|+. .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 456778899999999999999999999875 237788999999999999999999999999875 3442 2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
.+..+-.+ +...|+.+.|.+.++++
T Consensus 80 ~~~~~~~~--~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELA--QGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHH--HHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHH--HHHHHhHhhhHhHHHHh
Confidence 33333333 45556666555555444
No 149
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.59 E-value=0.0022 Score=41.96 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=81.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCC-hhHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGY--LRVNRFREALTLFPEMQTSNIRPD-EFTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~l 78 (153)
.+...+..+...+.+.|++++|...+++... |+.. +..+...+ .+.+...+|...+++..+. .|+ ...+..+
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~-~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~l 114 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-YKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACEL 114 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChH-HHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456788899999999999999999999974 3333 32222211 2223344578888888764 354 5556656
Q ss_pred HHHHHHhccCChHHHHHHHHhcccC-----ChhhHHHHHHHHHhcCCCC
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLRK-----DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~~~~~ 122 (153)
-.. |.+.|++++|+..|+++.+. +...+..+...+...|..+
T Consensus 115 a~~--~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 115 AVQ--YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHH--HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHH--HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 555 79999999999999998653 2457888888888888765
No 150
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00077 Score=50.01 Aligned_cols=117 Identities=10% Similarity=0.083 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-------------------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-------------------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI 68 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 68 (153)
.+..+-..+.+.|++++|...|++..+ .+...|..+-..+.+.|++++|+..+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 477888899999999999999988754 145688899999999999999999999998753
Q ss_pred CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC-CHhHHHHHHHHHhcCCchhHh
Q 035927 69 RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP-DEVTYVGVLSACTHNGNETFV 147 (153)
Q Consensus 69 ~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a 147 (153)
+-+...+..+-.+ |.+.|++++|++.|++..+.+ | +...+..+-..+...|+.+++
T Consensus 304 p~~~~a~~~lg~~--~~~~g~~~eA~~~l~~Al~l~---------------------P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQG--WQGLKEYDQALADLKKAQEIA---------------------PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH--HHHccCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2245566655555 799999999999999986532 2 344455555555556665554
Q ss_pred h
Q 035927 148 I 148 (153)
Q Consensus 148 ~ 148 (153)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 151
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.54 E-value=0.0021 Score=45.73 Aligned_cols=116 Identities=15% Similarity=0.005 Sum_probs=87.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHH-HHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTA-MIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
-+...+..+...+.+.|++++|...+++... |+...... ....+.+.++.++|...+++..+.. +.+...+..+-.
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~ 227 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLAL 227 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHH
Confidence 3556788899999999999999999999974 44332222 2223556778888999998887653 234555666666
Q ss_pred HHHHhccCChHHHHHHHHhccc--C---ChhhHHHHHHHHHhcCCCC
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR--K---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~~~~~ 122 (153)
. |.+.|++++|.+.|.++.+ | +...+..+...+...|..+
T Consensus 228 ~--l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 228 Q--LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp H--HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred H--HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 5 7999999999999999965 3 2667899999988887765
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.00014 Score=48.69 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=81.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC--------------
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPD-------------- 71 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-------------- 71 (153)
+.........|+++++.+.|+.-... ....+..+-..+.+.|++++|...|++..+..- .|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 87 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 33444555567777777777544321 455688888888999999999999999986421 121
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCC-HhHHHHHHHH
Q 035927 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP----------TIRPD-EVTYVGVLSA 137 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~-~~t~~~ll~~ 137 (153)
...+..+-.+ |.+.|++++|+..+++..+ | +...|..+..++...+.++ .+.|+ ...+..+...
T Consensus 88 ~~~~~~la~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 88 ISCNLNLATC--YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 1455555554 6999999999999999865 2 5666666777777766666 33443 3445555555
Q ss_pred HhcCCchhHhh
Q 035927 138 CTHNGNETFVI 148 (153)
Q Consensus 138 ~~~~g~~~~a~ 148 (153)
+...|+.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.54 E-value=0.0013 Score=46.67 Aligned_cols=92 Identities=13% Similarity=-0.003 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVG 114 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~ 114 (153)
+...+..+-..+.+.|++++|...|++..+. .| +...+..+-.. |.+.|++++|++.+++..+.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~~~---------- 68 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALC--YLKMQQPEQALADCRRALELD---------- 68 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHTTSC----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH--HHHhcCHHHHHHHHHHHHHhC----------
Confidence 4566778888899999999999999999875 35 45555555554 799999999999999998743
Q ss_pred HHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 115 LAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 115 ~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+-+...+..+-.++.+.|++++|.+.|
T Consensus 69 ----------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 95 (281)
T 2c2l_A 69 ----------GQSVKAHFFLGQCQLEMESYDEAIANL 95 (281)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 124556777777777888888877765
No 154
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.53 E-value=0.0014 Score=42.23 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCC---------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPER---------------------DYVLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
...+...-..+.+.|++++|...|.+...- +...|..+-.++.+.|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345778888999999999999999876431 23678888999999999999999999998
Q ss_pred hCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 65 TSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 65 ~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+.. +.+...|..+-.+ |...|++++|...|++..+-
T Consensus 91 ~~~-p~~~~a~~~~g~~--~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKA--RIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHH--HHHHhcHHHHHHHHHHHHhc
Confidence 753 2355666666665 79999999999999998653
No 155
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.52 E-value=0.0012 Score=48.14 Aligned_cols=143 Identities=10% Similarity=0.020 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--C------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh-hHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--R------DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE-FTIVR 77 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~~~ 77 (153)
..+..+-..+...|++++|...+++... + ...+|..+...+...|++++|...+++..+..-.++. ..+..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 3466778889999999999999987531 1 2356778888888999999999999998653211111 12222
Q ss_pred -----HHHHHHHhccCChHHHHHHHHhcccCC-------hhhHHHHHHHHHhcCCCC----------------CCCCCH-
Q 035927 78 -----ILTAYMYCKCGDVEKAQRVLRKMLRKD-------KFTWTAMIVGLAISDPFP----------------TIRPDE- 128 (153)
Q Consensus 78 -----li~~~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~li~~~~~~~~~~----------------~~~p~~- 128 (153)
.... +...|+.++|...++...+++ ...+..+...+...|.++ +..++.
T Consensus 216 ~~~~~~~~~--~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 216 NANKVRVIY--WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHH--HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHH--HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 2222 578999999999999987642 224556666677766665 222233
Q ss_pred hHHHHHHHHHhcCCchhHhhhhc
Q 035927 129 VTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 129 ~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
..+..+-.++...|+.++|.+.+
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666677778889998888765
No 156
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.48 E-value=0.00045 Score=51.85 Aligned_cols=27 Identities=7% Similarity=-0.136 Sum_probs=16.9
Q ss_pred CCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 126 PDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 126 p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+..+|..+-..|...|+.++|++.|+
T Consensus 428 ~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 428 ADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp -CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356789999999999999999999875
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.46 E-value=0.0025 Score=45.17 Aligned_cols=112 Identities=14% Similarity=0.036 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChh---HHHHHHHHHHHhccCChHHHHHHHHhccc-----CC----hh
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEF---TIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KD----KF 106 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~---t~~~li~~~~~~~~g~~~~a~~~~~~m~~-----~~----~~ 106 (153)
+...+..+.+.|++++|..++++..+.. ..|+.. .|...+..+ |...|++++|+..|++..+ .+ ..
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAY-VLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHH-HHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4445778889999999999999998743 233322 122223443 6788899999999999853 13 33
Q ss_pred hHHHHHHHHHhcCCCC--------------C---CCCCH-hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 107 TWTAMIVGLAISDPFP--------------T---IRPDE-VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 107 ~~~~li~~~~~~~~~~--------------~---~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.|+.+...|...|.++ . ..|.. .++..+...|.+.|++++|.+.++
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6888888898888777 1 12222 468888899999999999998764
No 158
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.43 E-value=0.00029 Score=43.04 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=60.3
Q ss_pred hcCChHHHHHHHHhCCC-----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHhccCCh
Q 035927 18 NRGQVDIARQYFAQMPE-----R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 18 ~~g~~~~a~~l~~~m~~-----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~g~~ 90 (153)
..|++++|...|++..+ | +...|..+-..+.+.|++++|...+++..+.. |+ ...+..+-.+ |.+.|++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~--~~~~g~~ 77 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMV--LYNLGRY 77 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH--HHHHTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHH--HHHcCCH
Confidence 46788888888888753 2 45678889999999999999999999998753 43 4445444444 7999999
Q ss_pred HHHHHHHHhccc
Q 035927 91 EKAQRVLRKMLR 102 (153)
Q Consensus 91 ~~a~~~~~~m~~ 102 (153)
++|+..|++..+
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 159
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.41 E-value=0.0006 Score=52.68 Aligned_cols=122 Identities=10% Similarity=-0.053 Sum_probs=82.4
Q ss_pred HHHhcCChHHHHHHHHhCCC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCC----hhHHH
Q 035927 15 GYINRGQVDIARQYFAQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS---NIRPD----EFTIV 76 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~----~~t~~ 76 (153)
.+-..|++++|..++++... + ...+++.|...|...|++++|+.++++.++- -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999988877641 2 4578999999999999999999999987542 12333 34556
Q ss_pred HHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCCH-hHHHHHHHHHhcCCchhHhhhhc
Q 035927 77 RILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPDE-VTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 77 ~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
.+-.. |...|++++|+.++++..+.-..+ +..-.|+. .+.+.+-.++...|.+++|..+|
T Consensus 398 nLa~~--~~~~G~~~eA~~~~~~Al~i~~~~-------------lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 398 RAGLT--NWHAGHIEVGHGMICKAYAILLVT-------------HGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHH--HHHTTCHHHHHHHHHHHHHHHHHH-------------TCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHCCCHHHHHHHHHHHHHHHHHH-------------hCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 799999999999999875320000 00012333 34555556666777777776655
No 160
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.36 E-value=0.00042 Score=48.22 Aligned_cols=110 Identities=10% Similarity=0.024 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCC--C----CHHHHHHHHHHHHh--------cCChHHHHHHHHHHhhCCCCCC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPE--R----DYVLWTAMIDGYLR--------VNRFREALTLFPEMQTSNIRPD 71 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~----~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~ 71 (153)
...+..+..++.+.|++++|...|++..+ | ....+..+-..+.+ .|++++|...|++..+.. |+
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~ 129 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PN 129 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cC
Confidence 45678888999999999999999999863 3 24567777778888 899999999999998653 43
Q ss_pred h-hHHH----------------HHHHHHHHhccCChHHHHHHHHhccc--CC----hhhHHHHHHHHHhc
Q 035927 72 E-FTIV----------------RILTAYMYCKCGDVEKAQRVLRKMLR--KD----KFTWTAMIVGLAIS 118 (153)
Q Consensus 72 ~-~t~~----------------~li~~~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~ 118 (153)
. .... ..+..+ |.+.|++++|+..|+++.+ |+ ...+..+..+|...
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARL-YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 2 2221 222332 7999999999999999864 32 34666777777655
No 161
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.35 E-value=0.0078 Score=45.78 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=6.2
Q ss_pred cCChHHHHHHHHhc
Q 035927 87 CGDVEKAQRVLRKM 100 (153)
Q Consensus 87 ~g~~~~a~~~~~~m 100 (153)
.++.++|.+.|++.
T Consensus 200 ~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 200 ERNDAISAQWYRKS 213 (490)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHH
Confidence 34444444444443
No 162
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.34 E-value=0.00074 Score=43.53 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-------CC---------CCCh-hHHHHHHHHHHHhccCChHHHHHHHHh
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTS-------NI---------RPDE-FTIVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~---------~p~~-~t~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
...+...-..+.+.|++++|...|....+. .- .|.. ..|..+-.+ |.+.|++++|+..+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~--~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQC--YLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHH--HHhcCcHHHHHHHHHH
Confidence 456777888889999999999999998764 00 2222 344444444 7999999999999999
Q ss_pred cccC---ChhhHHHHHHHHHhcCCCC
Q 035927 100 MLRK---DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 100 m~~~---~~~~~~~li~~~~~~~~~~ 122 (153)
..+- +...|..+..++...|.++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~ 114 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLD 114 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHH
Confidence 8653 3333444444444444333
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.33 E-value=0.0081 Score=43.07 Aligned_cols=99 Identities=12% Similarity=-0.085 Sum_probs=71.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPER-D----YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRI 78 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 78 (153)
|+....-.+-..+.+.+++++|+..|+...+. + ...+.-+-.++.+.|++++|+..|++.......|....=..+
T Consensus 133 p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 133 SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 43335455566899999999999999876543 2 336777788889999999999999998855443542221111
Q ss_pred HHHHHHhccCChHHHHHHHHhccc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
-.+..+.+.|+.++|..+|+++.+
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111127999999999999999964
No 164
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.31 E-value=0.0017 Score=47.38 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------hhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD--------------EFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+...|..+-..+.+.|++++|...|++..+..-... ...+..+-.+ |.+.|++++|++.+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~--~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC--HLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Confidence 456788899999999999999999999987532111 3566666665 799999999999999997
Q ss_pred cCChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 102 RKDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 102 ~~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
+.+ +-+...|..+-.+|...|++++|.+.|+
T Consensus 224 ~~~--------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 224 ELD--------------------SNNEKGLSRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhC--------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 642 1256778888889999999999988764
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.30 E-value=0.011 Score=44.93 Aligned_cols=108 Identities=9% Similarity=0.031 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHHhCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhHH
Q 035927 5 DVISWTDIVSGYIN----RGQVDIARQYFAQMPE-RDYVLWTAMIDGYLR----VNRFREALTLFPEMQTSNIRPDEFTI 75 (153)
Q Consensus 5 d~~~~~~li~~~~~----~g~~~~a~~l~~~m~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~ 75 (153)
|...+..+-..|.. .+++++|...|++..+ .+...+..|-..|.. .+++++|...|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 34444555555555 5666666666665542 355555556666665 566666666666665544 23333
Q ss_pred HHHHHHHHHhc----cCChHHHHHHHHhcccC-ChhhHHHHHHHHHh
Q 035927 76 VRILTAYMYCK----CGDVEKAQRVLRKMLRK-DKFTWTAMIVGLAI 117 (153)
Q Consensus 76 ~~li~~~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~ 117 (153)
..+-.. |.. .+++++|.+.|++..+. +...+..+...|..
T Consensus 115 ~~Lg~~--y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 159 (490)
T 2xm6_A 115 QNLGVM--YHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFE 159 (490)
T ss_dssp HHHHHH--HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 333333 344 55666666666665443 34444444444443
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.30 E-value=0.00013 Score=44.65 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=49.9
Q ss_pred hcCChHHHHHHHHHHhhCCC-CCC-hhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC
Q 035927 49 RVNRFREALTLFPEMQTSNI-RPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP 126 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~-~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p 126 (153)
..|++++|+..|++..+.+. .|+ ...+..+-.. |.+.|++++|++.|++..+.+ |
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~~---------------------p 58 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGST--FRTLGEYRKAEAVLANGVKQF---------------------P 58 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC---------------------T
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhC---------------------C
Confidence 35789999999999988642 143 3444444444 799999999999999997532 2
Q ss_pred -CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 127 -DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 127 -~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
+...+..+..++.+.|++++|.+.|
T Consensus 59 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 59 NHQALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2344555555555555555555544
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.26 E-value=0.0018 Score=47.29 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCH------------------HHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP--ERDY------------------VLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
..+..+-..+.+.|++++|...|++.. .|+. ..|..+-..+.+.|++++|+..++..++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446777788889999999999999865 2332 27888888999999999999999999875
Q ss_pred CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 67 ~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
. +-+...+..+-.+ |...|++++|++.|++..+.
T Consensus 260 ~-p~~~~a~~~lg~a--~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 260 E-EKNPKALFRRGKA--KAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp C-TTCHHHHHHHHHH--HHTTTCHHHHHHHHHHTTC-
T ss_pred C-CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHH
Confidence 3 2356667766666 69999999999999999764
No 168
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.25 E-value=0.0028 Score=46.14 Aligned_cols=125 Identities=6% Similarity=-0.024 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCC--CCh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-----RD----YVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIR--PDE 72 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--p~~ 72 (153)
.++.+-..+...|++++|...+++... .+ ..+++.+-..+...|++++|...+++..+. +.. |..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 355556667777888877777776542 11 123555666667778888888777776542 221 222
Q ss_pred h-HHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC--CHhHHHHHHHHHhcCCchhHhhh
Q 035927 73 F-TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP--DEVTYVGVLSACTHNGNETFVIN 149 (153)
Q Consensus 73 ~-t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~ 149 (153)
. .+..+-.. |...|++++|...+++..+... ...| ....+..+...+...|++++|.+
T Consensus 135 ~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 135 EFLVRIRAQL--LWAWARLDEAEASARSGIEVLS-----------------SYQPQQQLQCLAMLIQCSLARGDLDNARS 195 (373)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHTT-----------------TSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHH--HHHhcCHHHHHHHHHHHHHHhh-----------------ccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2 22323333 5777888888888777643100 0111 12445566666667777777766
Q ss_pred hc
Q 035927 150 SC 151 (153)
Q Consensus 150 ~~ 151 (153)
.+
T Consensus 196 ~l 197 (373)
T 1hz4_A 196 QL 197 (373)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 169
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0035 Score=35.66 Aligned_cols=57 Identities=18% Similarity=0.488 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
.+..+-..+.+.|++++|...|++.. ..+...+..+-..+.+.|++++|...+++..
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444444444444444432 1133344444444444444444444444443
No 170
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.21 E-value=0.0013 Score=43.39 Aligned_cols=105 Identities=13% Similarity=0.059 Sum_probs=73.1
Q ss_pred HHhcCChHHHHH---HHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh----CCCCCC-hhHHHHHHHHHHHhcc
Q 035927 16 YINRGQVDIARQ---YFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQT----SNIRPD-EFTIVRILTAYMYCKC 87 (153)
Q Consensus 16 ~~~~g~~~~a~~---l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~t~~~li~~~~~~~~ 87 (153)
....|++++|.+ ++..-+......+..+-..+...|++++|...+++..+ .+..|. ...+..+-.. |...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMV--ERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHT
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHHc
Confidence 346799999999 76664445678899999999999999999999998865 233332 3344444444 7999
Q ss_pred CChHHHHHHHHhccc-----C-C----hhhHHHHHHHHHhcCCCC
Q 035927 88 GDVEKAQRVLRKMLR-----K-D----KFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 88 g~~~~a~~~~~~m~~-----~-~----~~~~~~li~~~~~~~~~~ 122 (153)
|++++|.+.+++..+ + + ...+..+...+...|.++
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 124 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999988743 1 2 345677777777777766
No 171
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.19 E-value=0.0037 Score=50.21 Aligned_cols=145 Identities=11% Similarity=0.076 Sum_probs=98.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC-------------CC------------HHHHHHHHHHHHhcCChHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE-------------RD------------YVLWTAMIDGYLRVNRFREALT 58 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~ 58 (153)
.+...|-..+...-+.|++++|..+|++... |+ ...|...++..-+.|+++.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555677888888889999999999998763 21 2358888888778899999999
Q ss_pred HHHHHhhC-C-CCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC---ChhhHHHHHHHHHhcCCCC----------C
Q 035927 59 LFPEMQTS-N-IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---DKFTWTAMIVGLAISDPFP----------T 123 (153)
Q Consensus 59 ~~~~m~~~-~-~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~~~~~----------~ 123 (153)
+|...++. + ..+......+.+. +...++.+.|.++|+...+. +...|...+.-....+..+ .
T Consensus 456 vf~~A~~~~~~~~~~lyi~~A~lE---~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 456 IFGKCRRLKKLVTPDIYLENAYIE---YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHTGGGSCTHHHHHHHHHH---HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCChHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999876 3 2233332223332 22335589999999988652 5556666666555555444 2
Q ss_pred CCC----CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 124 IRP----DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 124 ~~p----~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
..| ....|...+..-.+.|+.+.+.++.
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234 2356777777777889888887764
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.19 E-value=0.0042 Score=44.44 Aligned_cols=94 Identities=10% Similarity=-0.006 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-C
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP-------ER--DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRP-D 71 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~ 71 (153)
..+|+.+...|.+.|++++|...|++.. .+ -..+++.+-..|.+ |++++|+..+++..+. |-.+ .
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 4567777777777777766666555432 12 35667777777766 7777777777766532 1111 1
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..++..+-.. |.+.|++++|+..|++..+
T Consensus 155 ~~~~~~lg~~--~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 155 AELIGKASRL--LVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 2344455554 5777777777777777643
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.19 E-value=0.0031 Score=41.38 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE--RD-------------YVLWTAMIDGYLRVNRFREALTLFPEMQTS----- 66 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 66 (153)
..+...-..+.+.|++++|...|++..+ |+ ...|+.+-.++.+.|++++|+..++..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3466677788999999999999998763 32 238999999999999999999999998874
Q ss_pred CCCCCh-hHH----HHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 67 NIRPDE-FTI----VRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 67 ~~~p~~-~t~----~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+.||. ..| .-.-.+ +...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~a--L~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALA--LDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHH--HHHCCCHHHHHHHHHHHHh
Confidence 225643 344 344444 6999999999999999854
No 174
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.17 E-value=0.0072 Score=40.66 Aligned_cols=93 Identities=11% Similarity=0.158 Sum_probs=69.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhcc
Q 035927 12 IVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKC 87 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~ 87 (153)
+-..+.+.|++++|...|++.. .| +...|..+-..+...|++++|...|++..+.. | +...+..+-.. |...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~--~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNY--YYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH--HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHH--HHHH
Confidence 8889999999999999999886 34 78899999999999999999999999998753 5 45555555554 3444
Q ss_pred C--ChHHHHHHHHhcccCChhhH
Q 035927 88 G--DVEKAQRVLRKMLRKDKFTW 108 (153)
Q Consensus 88 g--~~~~a~~~~~~m~~~~~~~~ 108 (153)
| +.+.+...++....++...|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~ 158 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQY 158 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCchhH
Confidence 3 45567777777777665443
No 175
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.13 E-value=0.0034 Score=42.52 Aligned_cols=122 Identities=8% Similarity=0.001 Sum_probs=88.7
Q ss_pred HHHHHHhCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC----ChHHHHHHHHh
Q 035927 25 ARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG----DVEKAQRVLRK 99 (153)
Q Consensus 25 a~~l~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g----~~~~a~~~~~~ 99 (153)
|.+.|.+.. ..+...+..|-..+...+++++|...|++..+.| +...+..+-.. |.. + +.++|.+.|++
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~--y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQL--KIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHH--TTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH--HHc-CCCCCCHHHHHHHHHH
Confidence 444444443 3477888888889999999999999999998876 44555555554 566 6 89999999999
Q ss_pred cccC-ChhhHHHHHHHHHh----cCCCC----------CCCCC---HhHHHHHHHHHhc----CCchhHhhhhcc
Q 035927 100 MLRK-DKFTWTAMIVGLAI----SDPFP----------TIRPD---EVTYVGVLSACTH----NGNETFVINSCN 152 (153)
Q Consensus 100 m~~~-~~~~~~~li~~~~~----~~~~~----------~~~p~---~~t~~~ll~~~~~----~g~~~~a~~~~~ 152 (153)
..++ +...+..+-..|.. .++++ ...|. ...+..|-..|.. .++.++|++.|+
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8766 67777777777765 33333 44453 6777788888877 778999988764
No 176
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.02 E-value=0.0038 Score=36.95 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+...|..+-..+.+.|++++|...|++..+.. | +...|..+-.+ |.+.|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKL--YERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555432 2 22233333333 455555555555555553
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.012 Score=43.47 Aligned_cols=127 Identities=11% Similarity=0.071 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CC---HHHHHHHHHHHH-hcCChHHHHHHHHHHhh----CCCCCC-hh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-----RD---YVLWTAMIDGYL-RVNRFREALTLFPEMQT----SNIRPD-EF 73 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-----~~---~~~~~~li~~~~-~~~~~~~a~~~~~~m~~----~~~~p~-~~ 73 (153)
.+..+...|.+.|++++|.+.+.+..+ ++ .......+..+. ..|+.++|..++..... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 477889999999999999999998863 11 122333333333 45889999999988753 333343 34
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCC-CHhHHHHHHHHHhcCCchhHhhhhc
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRP-DEVTYVGVLSACTHNGNETFVINSC 151 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 151 (153)
++..+... |...|++++|..+++....... .. .-+| ....+..+...|...|++++|..++
T Consensus 137 ~~~~la~~--~~~~g~~~~A~~~l~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 137 LSIKLATL--HYQKKQYKDSLALINDLLREFK--------------KL-DDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHHHHHH--HHHHTCHHHHHHHHHHHHHHHT--------------TS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH--HHHccChHHHHHHHHHHHHHHH--------------hc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 45555555 7999999999999998743100 00 0112 2356777778888888888887765
No 178
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.96 E-value=0.011 Score=33.49 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc--C-ChhhHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR--K-DKFTWTAMI 112 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li 112 (153)
+...|..+-..+.+.|++++|...+++..+.. +.+...+..+-.. |.+.|++++|.+.|++..+ | +...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH--HHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45678888888999999999999999998753 2245555555555 7999999999999999864 3 344444444
Q ss_pred HHH
Q 035927 113 VGL 115 (153)
Q Consensus 113 ~~~ 115 (153)
..+
T Consensus 85 ~~~ 87 (91)
T 1na3_A 85 NAK 87 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 179
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.90 E-value=0.0061 Score=38.02 Aligned_cols=93 Identities=16% Similarity=0.253 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC-h
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE-----R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRPD-E 72 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~ 72 (153)
.++..+...+...|++++|...+++..+ + ....+..+-..+...|++++|...+++..+. +..+. .
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 3688888999999999999999988652 1 2457888888888999999999999988643 22222 2
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
..+..+-.. |...|++++|.+.+++..
T Consensus 130 ~~~~~la~~--~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 130 RACWSLGNA--YTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHH--HHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHccCHHHHHHHHHHHH
Confidence 344444444 789999999999998764
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.008 Score=35.51 Aligned_cols=78 Identities=12% Similarity=0.126 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPDEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~li 79 (153)
-+...+..+-..+.+.|++++|...|++..+ | +...|..+-..+.+.|++++|...+++..+.. -.++......+-
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 3566789999999999999999999999863 3 67789999999999999999999999887532 224444444444
Q ss_pred HH
Q 035927 80 TA 81 (153)
Q Consensus 80 ~~ 81 (153)
..
T Consensus 85 ~~ 86 (100)
T 3ma5_A 85 DA 86 (100)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.86 E-value=0.0023 Score=49.45 Aligned_cols=95 Identities=6% Similarity=-0.123 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCC--
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT---SNIRP-- 70 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p-- 70 (153)
.+++.|..+|...|++++|..++++... | ...+++.|-..|...|++++|+.++++..+ .-+.|
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4599999999999999999998888652 2 567899999999999999999999998853 11234
Q ss_pred -ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 71 -DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 71 -~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
++.....++.-+ +...+..++|+.++.++.+
T Consensus 432 p~~~~~~~~l~~~-~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQT-EMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 344444455554 7788899999999999864
No 182
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.86 E-value=0.0043 Score=43.92 Aligned_cols=114 Identities=8% Similarity=-0.044 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC-----
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQM--------PER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPD----- 71 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m--------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~----- 71 (153)
..+..+...+...|++++|...+.+. ... ...+|+.+-..|...|++++|+..+++..+. ...|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 44455666777777777777766542 233 3447777777777777777777777776521 01111
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHhcccC---------ChhhHHHHHHHHHhcCCCC
Q 035927 72 EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK---------DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~~~~~ 122 (153)
..++..+-.. |.+.|++++|++.+++..+- -..+|..+...|.+.|.++
T Consensus 196 ~~~~~nlg~~--y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 196 VKVRYNHAKA--LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHhHHHH--HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcH
Confidence 1344444444 57777777777777765321 1445666666666666554
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.75 E-value=0.0082 Score=45.63 Aligned_cols=109 Identities=9% Similarity=0.064 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----------------hhHHHHHHHHHHHhccCChHHHHHHHHh
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD----------------EFTIVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----------------~~t~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
....|..+-..+.+.|++++|...|++..+.. |+ ...|..+-.+ |.+.|++++|+..+++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~--~~~~g~~~~A~~~~~~ 342 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMC--YLKLREYTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHHHH
Confidence 45578888899999999999999999998642 32 3555555555 7999999999999999
Q ss_pred ccc--C-ChhhHHHHHHHHHhcCCCC----------CCCCCH-hHHHHHHHHHhcCCchhHhh
Q 035927 100 MLR--K-DKFTWTAMIVGLAISDPFP----------TIRPDE-VTYVGVLSACTHNGNETFVI 148 (153)
Q Consensus 100 m~~--~-~~~~~~~li~~~~~~~~~~----------~~~p~~-~t~~~ll~~~~~~g~~~~a~ 148 (153)
..+ | +...|..+..+|...+.++ .+.|+. ..+..+-..+.+.|+.+++.
T Consensus 343 al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 343 ALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 864 3 6777888888888887777 556644 55777777777777777664
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.75 E-value=0.0097 Score=35.74 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=53.6
Q ss_pred HHHHHHhCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 25 ARQYFAQMP---ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 25 a~~l~~~m~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
|...|++.. ..+...|..+-..+.+.|++++|...+++..+.. +.+...+..+-.. |.+.|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKT--LQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Confidence 444444442 2367788888888888999999999998887653 2234555555555 688999999999998875
Q ss_pred c
Q 035927 102 R 102 (153)
Q Consensus 102 ~ 102 (153)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.75 E-value=0.0068 Score=36.46 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
.+...+..+...+.+.|++++|...|++.. .| +...|..+-..+.+.|++++|...|+...+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778899999999999999999999875 23 6778999999999999999999999988753
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.0073 Score=45.79 Aligned_cols=89 Identities=9% Similarity=0.053 Sum_probs=67.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCC----Chh
Q 035927 12 IVSGYINRGQVDIARQYFAQMPE-------R----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS---NIRP----DEF 73 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p----~~~ 73 (153)
.+..+.+.|++++|..++++... + ...+++.|...|...|++++|+.++++.+.- -+.| -..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 35567788999999999986642 2 4568999999999999999999999988642 1223 234
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+++.+-.. |...|++++|+.++++..+
T Consensus 373 ~l~nLa~~--~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKL--QLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhcCCHHHHHHHHHHHHH
Confidence 45555555 7999999999999998753
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.73 E-value=0.0097 Score=44.07 Aligned_cols=93 Identities=9% Similarity=0.061 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC--------------CCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTS--------------NIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..|..+-..+.+.|++++|+..|++.++. ...| +...|..+-.+ |.+.|++++|++.+++..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~--~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC--KLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHH--HHhccCHHHHHHHHHHHHH
Confidence 45788888899999999999999988761 1223 33455555554 7999999999999999987
Q ss_pred CChhhHHHHHHHHHhcCCCCCCCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 103 KDKFTWTAMIVGLAISDPFPTIRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 103 ~~~~~~~~li~~~~~~~~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+ +-+...|..+-.+|.+.|++++|.+.|+
T Consensus 302 ~~--------------------p~~~~a~~~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 302 ID--------------------PSNTKALYRRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp TC--------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hC--------------------chhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 53 1246678888888899999999887764
No 188
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.71 E-value=0.085 Score=38.14 Aligned_cols=145 Identities=6% Similarity=-0.017 Sum_probs=107.0
Q ss_pred chhHHHHHHHHH----Hhc---CChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCh
Q 035927 5 DVISWTDIVSGY----INR---GQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFR--EALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 5 d~~~~~~li~~~----~~~---g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~ 72 (153)
+..+|+---..+ .+. +++++++.+++++.+ .|..+|+----.+.+.|.++ ++++.++.+.+.+. -|-
T Consensus 102 ~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~ 180 (306)
T 3dra_A 102 NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNN 180 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCH
T ss_pred cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCH
Confidence 334455555555 555 789999999999973 37777777777777778887 99999999998653 456
Q ss_pred hHHHHHHHHHHHhccCC------hHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCCC-----------CC----CCCH
Q 035927 73 FTIVRILTAYMYCKCGD------VEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPFP-----------TI----RPDE 128 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~------~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~~-----------~~----~p~~ 128 (153)
..|+---.. +.+.|+ ++++++.+++..+ | |...|+.+-..+.+.|... .. ..+.
T Consensus 181 sAW~~R~~l--l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 181 SAWSHRFFL--LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp HHHHHHHHH--HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred HHHHHHHHH--HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 666655444 355565 8889999888754 3 8899999888887776543 11 2355
Q ss_pred hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 129 VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 129 ~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
..+..+...+.+.|+.++|.++|+
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHH
Confidence 778888899999999999999875
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.66 E-value=0.017 Score=37.79 Aligned_cols=99 Identities=14% Similarity=0.077 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-C-----Chh-----HHHHHHHHHHHhccCChHHHHHHHHhcccCChh
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-P-----DEF-----TIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKF 106 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p-----~~~-----t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~ 106 (153)
..+...-..+.+.|++++|...|+...+-.-. | +.. .|.-.-.+ +.+.|++++|+..+++..+-
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~a--l~~Lgr~~eAl~~~~kAL~l--- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA--LAGLRSFDEALHSADKALHY--- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHh---
Confidence 34556666777899999999999999764211 1 222 55555554 79999999999999988653
Q ss_pred hHHHHHHHHHhcCCCCCCCCCH-hHH----HHHHHHHhcCCchhHhhhhcc
Q 035927 107 TWTAMIVGLAISDPFPTIRPDE-VTY----VGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 107 ~~~~li~~~~~~~~~~~~~p~~-~t~----~~ll~~~~~~g~~~~a~~~~~ 152 (153)
|| +.+ .+.|+. ..| ...-.++...|++++|++.|+
T Consensus 87 -~n-------~~~---e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 87 -FN-------RRG---ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp -HH-------HHC---CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hh-------ccc---cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 00 000 234654 567 888899999999999998875
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.59 E-value=0.0049 Score=47.22 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=68.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRIL 79 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li 79 (153)
.+...|..+..++.+.|++++|.+.+++..+ .+...|..+-..+.+.|++++|+..+++..+.. | +...+..+-
T Consensus 38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~ 115 (477)
T 1wao_1 38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQ 115 (477)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 3467799999999999999999999998752 367889999999999999999999999998653 3 222333332
Q ss_pred HHHHHhccCChHHHHHHHH
Q 035927 80 TAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~ 98 (153)
.+..+.+.|++++|++.++
T Consensus 116 ~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 116 ECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 2211478899999999998
No 191
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.46 E-value=0.016 Score=39.26 Aligned_cols=64 Identities=20% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSN-IRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
...+-.+...+.+.|++++|...|+++.+.. -.|. ...+..+..+ |.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~--~~~~~~~~~A~~~~~~~l~ 69 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYA--YYKNADLPLAQAAIDRFIR 69 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Confidence 3455566677889999999999999998642 1222 2345555555 7999999999999999965
No 192
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.45 E-value=0.0061 Score=46.34 Aligned_cols=82 Identities=9% Similarity=0.023 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHhCC-------CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCC----ChhHHHHHHH
Q 035927 19 RGQVDIARQYFAQMP-------ER----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS---NIRP----DEFTIVRILT 80 (153)
Q Consensus 19 ~g~~~~a~~l~~~m~-------~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p----~~~t~~~li~ 80 (153)
.|++++|..++++.. .+ ...+++.|...|...|++++|+.++++.++- -+.| -..+++-+-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 467888888887653 22 4578999999999999999999999998642 1223 3345666666
Q ss_pred HHHHhccCChHHHHHHHHhccc
Q 035927 81 AYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
. |...|++++|+.++++..+
T Consensus 391 ~--~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 L--YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp H--HHHTTCHHHHHHHHHHHHH
T ss_pred H--HHhccCHHHHHHHHHHHHH
Confidence 5 7999999999999998754
No 193
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.41 E-value=0.068 Score=40.42 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhcC---ChHHHHHHHHhCCC---CCHHHHHHHHHHHHhc----CChHHHHHHHHHHhhCCCCCChhHHH
Q 035927 7 ISWTDIVSGYINRG---QVDIARQYFAQMPE---RDYVLWTAMIDGYLRV----NRFREALTLFPEMQTSNIRPDEFTIV 76 (153)
Q Consensus 7 ~~~~~li~~~~~~g---~~~~a~~l~~~m~~---~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~t~~ 76 (153)
..+..|-..|.+.| +.++|.+.|++..+ ++...+..|-..|.+. +++++|...|+... .|. ...+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~ 252 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWV 252 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHH
Confidence 35556666666666 66666666665532 2334334555555443 56677777776665 322 22222
Q ss_pred HHHHHHHH--hccCChHHHHHHHHhcccC-ChhhHHHHHHHHH
Q 035927 77 RILTAYMY--CKCGDVEKAQRVLRKMLRK-DKFTWTAMIVGLA 116 (153)
Q Consensus 77 ~li~~~~~--~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~ 116 (153)
.+-..+ | ...++.++|.+.|++..+. +...+..+-..|.
T Consensus 253 ~Lg~~~-~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 253 SLAQLL-YDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHH-HHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222221 2 4566777777777776554 4555555555554
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.36 E-value=0.013 Score=42.65 Aligned_cols=82 Identities=11% Similarity=0.010 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChh------------------HHHHHHHHHHHhccCChHHHHHHHH
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEF------------------TIVRILTAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------t~~~li~~~~~~~~g~~~~a~~~~~ 98 (153)
...+..+-..+.+.|++++|...|++..+. .|+.. .|..+-.+ |.+.|++++|+..++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~--~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAAC--LIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHH--HHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 445777778888899999999999998764 34433 44444444 799999999999999
Q ss_pred hccc--C-ChhhHHHHHHHHHhcCCCC
Q 035927 99 KMLR--K-DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 99 ~m~~--~-~~~~~~~li~~~~~~~~~~ 122 (153)
+..+ | +...|..+..+|...+.++
T Consensus 255 ~al~~~p~~~~a~~~lg~a~~~~g~~~ 281 (338)
T 2if4_A 255 IVLTEEEKNPKALFRRGKAKAELGQMD 281 (338)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 9864 3 5666666666776666665
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.05 E-value=0.029 Score=42.49 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC--C-CCCC----hhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 44 IDGYLRVNRFREALTLFPEMQTS--N-IRPD----EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~--~-~~p~----~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
+..+.+.|++++|+.++++.++. . +.|+ ..+++.+... |...|++++|+.++++..+.-..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~--y~~~g~~~eA~~~~~~~L~i~~~---------- 361 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDA--CINLGLLEEALFYGTRTMEPYRI---------- 361 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHhHHH----------
Confidence 45566789999999999999753 2 3343 3567777777 68999999999999988542000
Q ss_pred hcCCCCCCCCCH-hHHHHHHHHHhcCCchhHhhhhcc
Q 035927 117 ISDPFPTIRPDE-VTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 117 ~~~~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
.+..-.|+. .+++.|-..|...|++++|..+|+
T Consensus 362 ---~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 362 ---FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp ---HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000123554 668889999999999999988764
No 196
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.95 E-value=0.21 Score=37.72 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhcC----ChHHHHHHHHhCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 7 ISWTDIVSGYINRG----QVDIARQYFAQMPERDYVLWTAMIDGYLRVN---RFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 7 ~~~~~li~~~~~~g----~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
..+..+-..|...+ ..+.+..++......+...+..|-..|.+.| +.++|+..|+...+.|. ++...+..+-
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 34455555666666 3455666666666666668889999999999 89999999999988874 4444333344
Q ss_pred HHHHHhcc----CChHHHHHHHHhcccC-ChhhHHHHHHHHH---hcCCCC--------CCC-CCHhHHHHHHHHHhcCC
Q 035927 80 TAYMYCKC----GDVEKAQRVLRKMLRK-DKFTWTAMIVGLA---ISDPFP--------TIR-PDEVTYVGVLSACTHNG 142 (153)
Q Consensus 80 ~~~~~~~~----g~~~~a~~~~~~m~~~-~~~~~~~li~~~~---~~~~~~--------~~~-p~~~t~~~ll~~~~~~g 142 (153)
.. |... ++.++|.+.|++.. + +...+..+-..|. ..++++ ... -+...+..+-..|. .|
T Consensus 221 ~~--y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G 296 (452)
T 3e4b_A 221 RV--LGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EG 296 (452)
T ss_dssp HH--HTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HC
T ss_pred HH--HhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cC
Confidence 43 4444 68999999999998 6 6677777766633 223332 011 14555656666665 45
Q ss_pred -----chhHhhhhcc
Q 035927 143 -----NETFVINSCN 152 (153)
Q Consensus 143 -----~~~~a~~~~~ 152 (153)
+.++|.+.|+
T Consensus 297 ~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 297 KWVPADAKAAEAHFE 311 (452)
T ss_dssp SSSCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 8888888775
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.015 Score=42.96 Aligned_cols=123 Identities=7% Similarity=-0.029 Sum_probs=83.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCC--C------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC
Q 035927 13 VSGYINRGQVDIARQYFAQMPE--R------------------DYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRPD 71 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~--~------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~ 71 (153)
...+.+.|++++|.+.|.+..+ + ...++..+...|.+.|++++|.+.+...... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3567789999999999988742 1 1134788999999999999999999988642 11122
Q ss_pred ---hhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC-HhHHHHHHHHHhcCCchhHh
Q 035927 72 ---EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD-EVTYVGVLSACTHNGNETFV 147 (153)
Q Consensus 72 ---~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~a 147 (153)
.......++.+ +...|+.+.|.++++...+.... . +..+. ..++..+...+...|++++|
T Consensus 91 ~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~-----------~----~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKF-EQVPDSLDDQIFVCEKSIEFAKR-----------E----KRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHHHHHHHHH-CSCCSCHHHHHHHHHHHHHHHHH-----------S----SCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHH-----------h----CccHHHHHHHHHHHHHHHHccChHHH
Confidence 22344455553 66788999999998887432000 0 11222 35567777788888888888
Q ss_pred hhhc
Q 035927 148 INSC 151 (153)
Q Consensus 148 ~~~~ 151 (153)
.+++
T Consensus 155 ~~~l 158 (434)
T 4b4t_Q 155 LALI 158 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.73 E-value=0.039 Score=31.86 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=22.4
Q ss_pred HHHhcCChHHHHHHHHhCC--CC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 15 GYINRGQVDIARQYFAQMP--ER-DYV-LWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~--~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
.+.+.|++++|...|++.. .| +.. .|..+-..+.+.|++++|...|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444433 11 233 444444444444444444444444443
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.69 E-value=0.019 Score=43.64 Aligned_cols=71 Identities=8% Similarity=-0.007 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh---CCCCCCh
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPE----------R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT---SNIRPDE 72 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~ 72 (153)
.+++.|..+|...|++++|..++++... | ...+++.|-..|...|++++|+.++++..+ .-+.||.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 5699999999999999999999988752 2 557899999999999999999999998854 2234555
Q ss_pred hHHHH
Q 035927 73 FTIVR 77 (153)
Q Consensus 73 ~t~~~ 77 (153)
.....
T Consensus 421 p~~~~ 425 (433)
T 3qww_A 421 PYISE 425 (433)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 44443
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.16 E-value=0.16 Score=31.82 Aligned_cols=89 Identities=12% Similarity=-0.041 Sum_probs=53.2
Q ss_pred CChHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc----cCChHHHH
Q 035927 20 GQVDIARQYFAQMPER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK----CGDVEKAQ 94 (153)
Q Consensus 20 g~~~~a~~l~~~m~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~----~g~~~~a~ 94 (153)
+++++|.+.|++..+. +.... |-..|...+..++|...|++..+.| +...+..+-.. |.+ .++.++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~--y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDF--YENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHH--HHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHH--HHcCCCCCccHHHHH
Confidence 4567777777766422 33333 5555555567777888888887764 34444444444 455 67888888
Q ss_pred HHHHhcccC-ChhhHHHHHHHH
Q 035927 95 RVLRKMLRK-DKFTWTAMIVGL 115 (153)
Q Consensus 95 ~~~~~m~~~-~~~~~~~li~~~ 115 (153)
+.|++..+. +...+..+-..|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y 103 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQ 103 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 888887654 344444443333
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.05 E-value=0.27 Score=39.32 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g 88 (153)
...++..+.+.|..++|.++.+. + . .-.....+.|++++|+++.+.+ .+...|..+-..+ .+.|
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~~---~-~----~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~a--l~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISPD---Q-D----QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDAS--LQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCC---H-H----HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHhCCChHHheecCCC---c-c----hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHH--HHcC
Confidence 36667777777777777766531 1 1 1123345667777777775433 3456777777774 7777
Q ss_pred ChHHHHHHHHhccc
Q 035927 89 DVEKAQRVLRKMLR 102 (153)
Q Consensus 89 ~~~~a~~~~~~m~~ 102 (153)
+++.|++.|.++..
T Consensus 696 ~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD 709 (814)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHccC
Confidence 77777777777644
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.02 E-value=0.088 Score=30.26 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=43.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCh-h-HHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDE-F-TIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~-t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
....+.+.|++++|...++...+.. |+. . .+..+-.. |.+.|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNA--YRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhc
Confidence 3456678899999999999998753 543 4 45554444 79999999999999998653
No 203
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.62 E-value=0.3 Score=28.53 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=19.8
Q ss_pred hHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 22 VDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 22 ~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
.++|..++++..+ | +......+-..+.+.|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444431 1 333444444444444555555555555443
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.40 E-value=0.68 Score=35.54 Aligned_cols=107 Identities=14% Similarity=0.269 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC--CHHHHH--HHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER--DYVLWT--AMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTA 81 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~ 81 (153)
.+|...+...-+.+.++.|..+|++...| +...|. +.+.... .++.+.|..+|+...+.- |+ ...+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 45777777777788899999999988433 223333 2333222 236999999999987642 33 3445566665
Q ss_pred HHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcC
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISD 119 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~ 119 (153)
..+.|+.+.|..+|+...+ ....|...+.-=...|
T Consensus 364 --e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 364 --LLRIGDEENARALFKRLEK-TSRMWDSMIEYEFMVG 398 (493)
T ss_dssp --HHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHS
T ss_pred --HHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCC
Confidence 5788999999999999854 3445555544333333
No 205
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.31 E-value=0.52 Score=37.88 Aligned_cols=113 Identities=8% Similarity=0.022 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC----CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMPER----DYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.+|...+....+.|.++.|..+|.+..+. ....|-.....-.+. ++.+.|..+|+...+. ++-+...+...++.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 36888888888899999999999988532 222332222222233 4589999999999876 43455666677775
Q ss_pred HHHhccCChHHHHHHHHhcccCC------hhhHHHHHHHHHhcCCCC
Q 035927 82 YMYCKCGDVEKAQRVLRKMLRKD------KFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 82 ~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~li~~~~~~~~~~ 122 (153)
....|+.+.|..+|+...+.. ...|...+.-=.+.|..+
T Consensus 514 --e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 514 --LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp --HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH
T ss_pred --HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 578899999999999986542 356777766666667665
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.28 E-value=0.068 Score=34.92 Aligned_cols=82 Identities=20% Similarity=0.138 Sum_probs=61.1
Q ss_pred HhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhCCCCC-ChhHHHHHHHHH
Q 035927 17 INRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRF----------REALTLFPEMQTSNIRP-DEFTIVRILTAY 82 (153)
Q Consensus 17 ~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p-~~~t~~~li~~~ 82 (153)
.+.+++++|...+++.. .| +...|+.+-..+.+.+++ ++|+..|++.++. .| +...|..+-.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a- 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA- 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH-
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH-
Confidence 45667888888888775 34 777888888888777654 5999999988875 34 45566666666
Q ss_pred HHhcc-----------CChHHHHHHHHhccc
Q 035927 83 MYCKC-----------GDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ~~~~~-----------g~~~~a~~~~~~m~~ 102 (153)
|... |++++|++.|++..+
T Consensus 90 -y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 90 -YTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp -HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 4554 589999999999865
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.16 E-value=0.38 Score=28.06 Aligned_cols=65 Identities=9% Similarity=0.007 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 36 DYVLWTAMIDGYLRVNR---FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
|...+..+-.++...++ .++|..++++.++. .|+...-..++.-. +.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~-~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIAND-HFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhh
Confidence 56667777777765544 79999999999875 46655555555553 79999999999999999764
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.05 E-value=1.3 Score=32.65 Aligned_cols=145 Identities=8% Similarity=-0.032 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHhc-C-ChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCC
Q 035927 5 DVISWTDIVSGYINR-G-QVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFR--------EALTLFPEMQTSNIRPD 71 (153)
Q Consensus 5 d~~~~~~li~~~~~~-g-~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~ 71 (153)
+..+|+-.--.+.+. + ++++++++++++.+. |..+|+----.+.+.|.++ ++++.++++.+... -|
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N 200 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RN 200 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TC
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CC
Confidence 334455555555555 5 677777777777643 4455554333333334444 77777777776542 35
Q ss_pred hhHHHHHHHHHHHhccCC-------hHHHHHHHHhccc--C-ChhhHHHHHHHHHhcCCC--------------------
Q 035927 72 EFTIVRILTAYMYCKCGD-------VEKAQRVLRKMLR--K-DKFTWTAMIVGLAISDPF-------------------- 121 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g~-------~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~~~~-------------------- 121 (153)
...|+---.. +.+.++ ++++++.+++..+ | |...|+.+-..+.+.+.-
T Consensus 201 ~SAW~~R~~l--L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 201 NSAWGWRWYL--RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp HHHHHHHHHH--HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred HHHHHHHHHH--HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 5666655554 466665 5778888777653 3 788888766666554432
Q ss_pred C----------CC-------CCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 122 P----------TI-------RPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 122 ~----------~~-------~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
. +. .+...-+..+...|...|+.++|.++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1 11 2456677888888999999999988774
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.01 E-value=0.76 Score=36.69 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
.....+.|+++.|.++...+ .+...|..+-..+.+.++++.|...|..+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred eehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34456778888888888766 456788888888888888888888887764
No 210
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.73 E-value=0.58 Score=27.58 Aligned_cols=61 Identities=7% Similarity=-0.006 Sum_probs=40.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE----------RDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
+..-|-.|-..+.+.|+++.|...|+...+ +....+..+..++.+.|++++|+..+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344566777777777777777777766431 1345566666777777777777777777664
No 211
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.71 E-value=0.3 Score=36.35 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCChhHHHHHHH
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQT-----SNIRPDEFTIVRILT 80 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~t~~~li~ 80 (153)
..++.++...|+.+++......+. .| +...|..+|.++.+.|+..+|+..|+...+ -|+.|+..+-...-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345666777888888887777665 23 677888888888888888888888888744 388887665444433
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.57 E-value=0.57 Score=34.85 Aligned_cols=63 Identities=10% Similarity=-0.025 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
+..+|..+.-.+...|++++|...+++....+ |+...|..+-.. +.-.|++++|.+.|++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~--~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKV--YEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHH--HHHCCCHHHHHHHHHHHHh
Confidence 55667777666667799999999999998875 776666333333 7889999999999988754
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.97 E-value=0.0015 Score=50.59 Aligned_cols=109 Identities=16% Similarity=0.201 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE--RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
|...|..+|.+..+.|.+++-...+...++ ++...=+.|+-+|++.+++.+-++++ -.|++.-...+-+=|
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRC 154 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHH
Confidence 344455555555555555555555544442 24444445555555555544322211 124444444444443
Q ss_pred HHhccCChHHHHHHHHhcc------------------------cCChhhHHHHHHHHHhcCCCC
Q 035927 83 MYCKCGDVEKAQRVLRKML------------------------RKDKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~------------------------~~~~~~~~~li~~~~~~~~~~ 122 (153)
...|..+.|.-+|..+. ..++.||.-.-.+|...+.|.
T Consensus 155 --f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 155 --YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp --HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTT
T ss_pred --HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHH
Confidence 44444444444444441 125566666666666665554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=92.75 E-value=0.69 Score=34.40 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQVDIARQYFAQMP--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILT 80 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~a~~l~~~m~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~ 80 (153)
.+..+|..+...+...|++++|...+++.. .|+...|..+-..+.-.|++++|.+.+++.... .|...||...=+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~~~ 351 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWIEN 351 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHHhC
Confidence 456667777777777899999999999987 567777767777777899999999999988765 477777665443
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=92.36 E-value=0.28 Score=31.97 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=60.7
Q ss_pred CchhHHHHHHHHHHhcCCh----------HHHHHHHHhCC--CC-CHHHHHHHHHHHHhcC-----------ChHHHHHH
Q 035927 4 KDVISWTDIVSGYINRGQV----------DIARQYFAQMP--ER-DYVLWTAMIDGYLRVN-----------RFREALTL 59 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~----------~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~-----------~~~~a~~~ 59 (153)
.+...|+.+-.++.+.+++ ++|+..|++.. .| +...|..+-.+|.+.| ++++|.+.
T Consensus 34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQF 113 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHH
Confidence 4667788888888887765 59999998886 34 6778999999998764 89999999
Q ss_pred HHHHhhCCCCCChhHHHHHHHH
Q 035927 60 FPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 60 ~~~m~~~~~~p~~~t~~~li~~ 81 (153)
|++.++. .|+...|...+..
T Consensus 114 ~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 114 FQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 9999874 6888888777775
No 216
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=92.03 E-value=2.5 Score=30.40 Aligned_cols=136 Identities=10% Similarity=0.034 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHHhCCC--C-CHHHHHHHHHHH----Hhc---CChHHHHHHHHHHhhCCCCCChhHH
Q 035927 8 SWTDIVSGYINRG--QVDIARQYFAQMPE--R-DYVLWTAMIDGY----LRV---NRFREALTLFPEMQTSNIRPDEFTI 75 (153)
Q Consensus 8 ~~~~li~~~~~~g--~~~~a~~l~~~m~~--~-~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~p~~~t~ 75 (153)
.|+.--..+...| ++++++.+++.+.. | +..+|+.--..+ .+. +++++++.+++.+.+.. +-+-..|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3777777777777 78888888877752 3 445555443333 333 67788888888887643 2355555
Q ss_pred HHHHHHHHHhccCChH--HHHHHHHhcccC---ChhhHHHHHHHHHhcCC------CC----------CCCC-CHhHHHH
Q 035927 76 VRILTAYMYCKCGDVE--KAQRVLRKMLRK---DKFTWTAMIVGLAISDP------FP----------TIRP-DEVTYVG 133 (153)
Q Consensus 76 ~~li~~~~~~~~g~~~--~a~~~~~~m~~~---~~~~~~~li~~~~~~~~------~~----------~~~p-~~~t~~~ 133 (153)
+---.. +.+.|+++ ++++.++++.+. |-..|+..-..+...+. ++ ...| |...|+.
T Consensus 148 ~~R~~v--l~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWL--VDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHH--HHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHH--HHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 554444 36667777 888888888643 66677766555555443 22 2334 3455666
Q ss_pred HHHHHhcCCchhH
Q 035927 134 VLSACTHNGNETF 146 (153)
Q Consensus 134 ll~~~~~~g~~~~ 146 (153)
.-..+.+.|+...
T Consensus 226 ~~~ll~~~~~~~~ 238 (306)
T 3dra_A 226 LLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHTTCCGG
T ss_pred HHHHHHhcCCChH
Confidence 6666666666333
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.02 E-value=1.6 Score=28.09 Aligned_cols=82 Identities=13% Similarity=0.017 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 18 NRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 18 ~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
.+|++....+.+..+. .+...+...++.+...|.-++-.+++.++.. +.+|+....-.+-.+ |.+.|+..++.+++
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~A--y~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANA--LRRVGDERDATTLL 148 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHH--HHHTTCHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHH--HHHhcchhhHHHHH
Confidence 4577778888887774 3445567778888888888888888887644 446777777777777 68888888888888
Q ss_pred HhcccC
Q 035927 98 RKMLRK 103 (153)
Q Consensus 98 ~~m~~~ 103 (153)
.+.-++
T Consensus 149 ~~AC~k 154 (172)
T 1wy6_A 149 IEACKK 154 (172)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 877544
No 218
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.75 E-value=1.5 Score=27.17 Aligned_cols=87 Identities=11% Similarity=-0.040 Sum_probs=67.6
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 12 IVSGYINRGQVDIARQYFAQMP-ERDYVLWTAMIDGYLR----VNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~-~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
|-..|.+.+.+++|.+.|++-. ..+...+..|-..|.+ .+++++|...|+...+.|. ...+..+-.. |..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~--y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYK--QYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH--HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHH--HHC
Confidence 5555666677888999998875 3477888888888887 7899999999999988764 4455555554 566
Q ss_pred ----cCChHHHHHHHHhcccC
Q 035927 87 ----CGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 87 ----~g~~~~a~~~~~~m~~~ 103 (153)
.++.++|.+.|++..+.
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHHHC
Confidence 78999999999988654
No 219
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=91.63 E-value=1.3 Score=34.04 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
|...+....+.++++.|..+|+.. +.. +++...|-..... .+...++.+.|.++|+...+
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~l-E~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFI-EYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHH-HHHHCCChHHHHHHHHHHHH
Confidence 444444444556677777887777 221 1233333322222 12333467778888777654
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.96 E-value=0.9 Score=29.34 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=50.6
Q ss_pred HHHHHHHHhCC---CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHHHHhccCChHHH
Q 035927 23 DIARQYFAQMP---ERDYVLWTAMIDGYLRVN---RFREALTLFPEMQTSNIRP---DEFTIVRILTAYMYCKCGDVEKA 93 (153)
Q Consensus 23 ~~a~~l~~~m~---~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~~~g~~~~a 93 (153)
..+.+-|.+-. .++..+--.+--++++++ +++++..++++..+.+ .| ....|+.-+. |.+.|+.++|
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~---~~kl~~Y~~A 90 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG---NYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH---HHHTSCHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHH---HHHccCHHHH
Confidence 34444444431 246666666666777877 6678888998887764 24 2334444443 5899999999
Q ss_pred HHHHHhcccC
Q 035927 94 QRVLRKMLRK 103 (153)
Q Consensus 94 ~~~~~~m~~~ 103 (153)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 221
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.87 E-value=1.2 Score=26.88 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=40.5
Q ss_pred ChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 52 RFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+.=+...-++.+-...+.|+.....+.+++| -|-+++..|.++|+.++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAc--RRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRAC--RRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHH--HHhhhHHHHHHHHHHHHHH
Confidence 3345566666667778899999999999998 8999999999999998653
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.16 E-value=1.8 Score=25.36 Aligned_cols=64 Identities=11% Similarity=-0.016 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC------CCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSN------IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
..-+..|-..+.+.+++..|..-++...+.. -.+....+..+..+ |.+.|+++.|...+++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~--~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYA--VYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHH--HHHccCHHHHHHHHHHHHh
Confidence 3445677888889999999999998876531 12445566666666 7999999999999999854
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.45 E-value=3.2 Score=27.23 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CC----
Q 035927 7 ISWTDIVSGYINRGQVDIARQYFAQMP-----ERD-------YVLWTAMIDGYLRVNRFREALTLFPEMQTS--NI---- 68 (153)
Q Consensus 7 ~~~~~li~~~~~~g~~~~a~~l~~~m~-----~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~---- 68 (153)
-++-.=+..+...|.++.|+-+.+.+. .++ ..+..-+-+++...+++..|...|++.++. .+
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555677888899999888877754 122 236677788888999999999999985321 00
Q ss_pred -----------------CCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 69 -----------------RPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 69 -----------------~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
.++..-..=-|.-| |.+.+++++|+.+++.++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C-~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAEC-YTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHH-HHHTTCHHHHHHHHHTSCGG
T ss_pred CccccccccCCCcccccccchHHHHHHHHHH-HHHHCCHHHHHHHHhcCCch
Confidence 01112333446777 99999999999999999654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.37 E-value=3.3 Score=27.39 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
.....+.|+++.|.++.+.+ .+...|..|-+...+.|+++-|..-|....
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 44556778888888887766 466778888888888888777777776654
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.04 E-value=3.8 Score=26.36 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhC-C--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQM-P--ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR 69 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m-~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 69 (153)
+....+.-++.+...|+-++-.++...+ . ++++...-.+-.+|-+.|+..+|.+++.+..+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4455677788889999999999999884 3 457888888899999999999999999999888874
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.34 E-value=1.7 Score=28.01 Aligned_cols=75 Identities=7% Similarity=0.075 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHHhcC---ChHHHHHHHHhCCC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhH
Q 035927 3 NKDVISWTDIVSGYINRG---QVDIARQYFAQMPE---R--DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFT 74 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g---~~~~a~~l~~~m~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 74 (153)
+++..+.-.+--++++.+ ++++++.+++...+ | +...+-.|--++.+.|++++|+..++..++. .|+-.-
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 367777777788889988 66799999988763 3 2344555566668999999999999999874 565444
Q ss_pred HHHHH
Q 035927 75 IVRIL 79 (153)
Q Consensus 75 ~~~li 79 (153)
-..+.
T Consensus 107 A~~Lk 111 (152)
T 1pc2_A 107 AKELE 111 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 227
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.30 E-value=3.3 Score=24.92 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=47.3
Q ss_pred ChHHHHHHHHhCC-CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 21 QVDIARQYFAQMP-ERDYVLWTAMIDG--YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 21 ~~~~a~~l~~~m~-~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
.-++|.-+-+.+. +++ .-...||+. +.+.|++++|+.+.+... .||...|-++.. .|.|-.+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce----~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE----YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH----HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH----HhcccHHHHHHHH
Confidence 3455555555554 223 444445443 446788888877765554 688887777765 5777777777777
Q ss_pred HhcccCChh
Q 035927 98 RKMLRKDKF 106 (153)
Q Consensus 98 ~~m~~~~~~ 106 (153)
..+..++.+
T Consensus 93 ~~la~sg~p 101 (116)
T 2p58_C 93 NRLARSQDP 101 (116)
T ss_dssp HHHTTCCCH
T ss_pred HHHHhCCCH
Confidence 677655433
No 228
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.15 E-value=3.1 Score=25.02 Aligned_cols=76 Identities=13% Similarity=-0.027 Sum_probs=45.4
Q ss_pred ChHHHHHHHHhCC-CCCHHHHHHHHHH--HHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 21 QVDIARQYFAQMP-ERDYVLWTAMIDG--YLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 21 ~~~~a~~l~~~m~-~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
.-++|.-+-+.+. +++ .-...||+. +.+.|++++|+.+.+... .||...|-.+.. .|.|-.+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce----~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE----WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH----HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH----HhcccHHHHHHHH
Confidence 3455555555544 223 444444443 446677887776655444 677777777765 5777777777777
Q ss_pred HhcccCCh
Q 035927 98 RKMLRKDK 105 (153)
Q Consensus 98 ~~m~~~~~ 105 (153)
..+.+++.
T Consensus 92 ~~la~sg~ 99 (115)
T 2uwj_G 92 AGLGGSSD 99 (115)
T ss_dssp HHHHTCSS
T ss_pred HHHHhCCC
Confidence 66655543
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.02 E-value=1.9 Score=31.03 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHHhc-----CChHHHHHHHHHHhh
Q 035927 36 DYVLWTAMIDGYLRV-----NRFREALTLFPEMQT 65 (153)
Q Consensus 36 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~ 65 (153)
+...|..+...|.+. |+.++|...|++.++
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~ 232 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR 232 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH
Confidence 444444444444442 455555555555544
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.88 E-value=4.2 Score=29.31 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhc-----CChHHHHHHHHhCC--CC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHhhCCCC--CChhH
Q 035927 7 ISWTDIVSGYINR-----GQVDIARQYFAQMP--ER--DYVLWTAMIDGYLRV-NRFREALTLFPEMQTSNIR--PDEFT 74 (153)
Q Consensus 7 ~~~~~li~~~~~~-----g~~~~a~~l~~~m~--~~--~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~--p~~~t 74 (153)
..|..+...|.+. |+.++|.+.|++-. .| +..++...-+.+++. |+.+++...+++.++.... |+...
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 4688888889984 99999999999886 45 478888888988885 8999999999999988766 77665
Q ss_pred HHHHHH
Q 035927 75 IVRILT 80 (153)
Q Consensus 75 ~~~li~ 80 (153)
.|.+-+
T Consensus 280 an~~~q 285 (301)
T 3u64_A 280 LVILSQ 285 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 231
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.97 E-value=6.2 Score=26.70 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=54.2
Q ss_pred HHHHHHHHhCC--CCCHHHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 23 DIARQYFAQMP--ERDYVLWTAMIDGYLR--VNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 23 ~~a~~l~~~m~--~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
+++.+.|.... +.|..-....|...-. .++..++.++|..|.+.|+.- -+..|...-.. +...|++++|.++|
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~--lE~~g~~~~A~~Vy 138 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKL--LENAQFFLEAKVLL 138 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHH--HHHTTCHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHH
Confidence 44444454443 2355443333332222 555789999999999998865 44556666665 69999999999999
Q ss_pred HhcccCChh
Q 035927 98 RKMLRKDKF 106 (153)
Q Consensus 98 ~~m~~~~~~ 106 (153)
+.-++....
T Consensus 139 ~~GI~~~A~ 147 (202)
T 3esl_A 139 ELGAENNCR 147 (202)
T ss_dssp HHHHHTTCB
T ss_pred HHHHHcCCc
Confidence 998765433
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.90 E-value=4.3 Score=30.09 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
...++..+...|+.++|...+....... +.+...+..+|.+ |.+.|+..+|++.|+.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~a--l~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITA--YYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH--HHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHH
Confidence 3445666677899999999998887542 5688899999999 6999999999999999843
No 233
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.31 E-value=5.4 Score=25.40 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 55 EALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 55 ~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+...-++.+....+.|+.....+.+++| -|-+++..|.++|+.++.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAc--RRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRAC--RRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHH--HHhhhHHHHHHHHHHHHHh
Confidence 4445555566778999999999999998 9999999999999999753
No 234
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=85.25 E-value=12 Score=29.26 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhcCC----------hHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCC
Q 035927 7 ISWTDIVSGYINRGQ----------VDIARQYFAQMPE--R-DYVLWTAMIDGYLRVN--RFREALTLFPEMQTSNIRPD 71 (153)
Q Consensus 7 ~~~~~li~~~~~~g~----------~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~ 71 (153)
..|+---.++.+.|+ ++++.++++++.+ | +..+|+.---.+.+.+ +++++++.++.+.+... -+
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N 142 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RN 142 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-cc
Confidence 447766666666676 8999999999873 3 6777877777777778 67999999999998653 36
Q ss_pred hhHHHHHHHHHHHhccC-ChHHHHHHHHhcccC---ChhhHHHHHHHHHhc
Q 035927 72 EFTIVRILTAYMYCKCG-DVEKAQRVLRKMLRK---DKFTWTAMIVGLAIS 118 (153)
Q Consensus 72 ~~t~~~li~~~~~~~~g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~ 118 (153)
...|+---.. +.+.| ..+++.+.++++.+. |...|+.....+.+.
T Consensus 143 ~~aW~~R~~~--l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 143 FHCWDYRRFV--AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHH--HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH--HHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 6777665555 47778 899999999999764 788899888887774
No 235
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=84.89 E-value=12 Score=29.16 Aligned_cols=118 Identities=8% Similarity=-0.011 Sum_probs=81.4
Q ss_pred CChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhc
Q 035927 20 GQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVNR----------FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCK 86 (153)
Q Consensus 20 g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~ 86 (153)
..-++|.+.++++.. | +...|+.--..+.+.|+ ++++++.++.+.+..- =+...|..--.. +.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~--l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWL--LSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHH--HHT
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHH--HHH
Confidence 345678999988863 4 56677765555555555 8999999999987542 255666655555 577
Q ss_pred cC--ChHHHHHHHHhccc---CChhhHHHHHHHHHhcC-CCC----------CCCC-CHhHHHHHHHHHhc
Q 035927 87 CG--DVEKAQRVLRKMLR---KDKFTWTAMIVGLAISD-PFP----------TIRP-DEVTYVGVLSACTH 140 (153)
Q Consensus 87 ~g--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~~-~~~----------~~~p-~~~t~~~ll~~~~~ 140 (153)
.| +++++++.++++.+ .|...|+..--.+.+.+ ..+ ...| |...|+..-..+.+
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 88 77999999999965 37888888777777766 322 3445 44556666655554
No 236
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.54 E-value=4.8 Score=24.20 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=34.1
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHH
Q 035927 14 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIV 76 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 76 (153)
..+.+.|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45556666666666666666666666666655 35555555555554555554 24434443
No 237
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.09 E-value=5.1 Score=24.13 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=27.8
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 035927 14 SGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSN 67 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 67 (153)
..+.+.|++++|..+.+.+.-||...|-+|-. .+.|-.+++..-+.++..+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34555566666666666666666666655544 34454444444444554444
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.96 E-value=4.2 Score=26.39 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=54.2
Q ss_pred CCchhHHHHHHHHHHhcCCh------HHHHHHHHhCC---CCC-HHHHHHHHHHHHh------cCChHHHHHHHHHHhhC
Q 035927 3 NKDVISWTDIVSGYINRGQV------DIARQYFAQMP---ERD-YVLWTAMIDGYLR------VNRFREALTLFPEMQTS 66 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~------~~a~~l~~~m~---~~~-~~~~~~li~~~~~------~~~~~~a~~~~~~m~~~ 66 (153)
+-|..+|=..+...-+.|++ ++..++|++.- .|+ -..|..-|...++ .+++++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45666777777777777777 66667666543 121 1222222222221 35777788888877764
Q ss_pred CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 67 ~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
. .....-.++.+=.=.+.|++..|.+++.+-..
T Consensus 90 -h--KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 90 -C--KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -C--TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -h--HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2 22222222222123477788888888777655
No 239
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.38 E-value=5 Score=30.16 Aligned_cols=93 Identities=9% Similarity=0.026 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---CCCCChhHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE------RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS---NIRPDEFTIVRI 78 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~t~~~l 78 (153)
+...+.+.|.+.|+++.|.+.+.++.. .....+-.+|+.+...+++..+...+.+.... +-.|+...--..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788899999999999999999973 24557888889999999999999999988543 222322211111
Q ss_pred HHHHHHhccCChHHHHHHHHhc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m 100 (153)
-.+..+...+++..|-..|-..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1111245788899988888776
No 240
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=83.29 E-value=11 Score=27.40 Aligned_cols=60 Identities=13% Similarity=0.050 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCC--hHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC
Q 035927 7 ISWTDIVSGYINRGQ--VDIARQYFAQMPE---RDYVLWTAMIDGYLRVNR-FREALTLFPEMQTS 66 (153)
Q Consensus 7 ~~~~~li~~~~~~g~--~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~ 66 (153)
.+|+----.+.+.|+ ++++..+++++.+ .|..+|+----.+.+.|. ++++++.++.+.+.
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 334444444444442 4555555555542 244444444444444444 35555555555544
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.50 E-value=11 Score=30.87 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHhCCC--CCHH-HHH-HHHHHHHhcC-ChHHHHHHHHHHhhC------CCCC-ChhHH
Q 035927 9 WTDIVSGYINRGQ-VDIARQYFAQMPE--RDYV-LWT-AMIDGYLRVN-RFREALTLFPEMQTS------NIRP-DEFTI 75 (153)
Q Consensus 9 ~~~li~~~~~~g~-~~~a~~l~~~m~~--~~~~-~~~-~li~~~~~~~-~~~~a~~~~~~m~~~------~~~p-~~~t~ 75 (153)
-..|+..+...|+ .+.|..+|+++.. |... .+. ++|..+.+.+ +--+|.+++.+..+. ...+ +....
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3556666666666 5778888888864 3222 222 2333332322 122344444333211 1111 11111
Q ss_pred ---H---HHHH--HHHHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCCCCCCCCC-HhHHHHHHHHHhcCCchhH
Q 035927 76 ---V---RILT--AYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDPFPTIRPD-EVTYVGVLSACTHNGNETF 146 (153)
Q Consensus 76 ---~---~li~--~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 146 (153)
+ .|+. +=.+...|+++-|+++-++... +.|+ -.||..|..+|.+.|++|.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---------------------~aPseF~tW~~La~vYi~l~d~e~ 389 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---------------------LALDSFESWYNLARCHIKKEEYEK 389 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---------------------cCchhhHHHHHHHHHHHHhccHHH
Confidence 0 1111 1023568899999998888754 2233 3566666666666666666
Q ss_pred hhh
Q 035927 147 VIN 149 (153)
Q Consensus 147 a~~ 149 (153)
|+-
T Consensus 390 ALL 392 (754)
T 4gns_B 390 ALF 392 (754)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 242
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.34 E-value=9.9 Score=24.31 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNR--FREALTLFPEMQTSNIRP 70 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p 70 (153)
..+.+|.-|...|+.++|.+.++++..| .......+..++=+.++ -+.+..++..+.+.|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3678999999999999999999999877 33455556666655432 456778888887776533
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.55 E-value=3.5 Score=24.81 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCC--hHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 9 WTDIVSGYINRGQ--VDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 9 ~~~li~~~~~~g~--~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
|++---.|...-+ .=+..+-+..+- -|++....+.+++|-+.+++..|..+|+-.+.+- .+....|..+++-
T Consensus 11 F~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 11 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 4444444444433 223444444443 4788899999999999999999999998887542 2335568888876
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=78.33 E-value=1.3 Score=34.66 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=85.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CChhHHHHHHHHHHHhccCChHHHHHHHHhcccC--ChhhHHHHH
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR-PDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--DKFTWTAMI 112 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li 112 (153)
+...|+.|-++..+.+.+.+|.+-| ++ -|...|.-+|.++ .+.|.+++-.+.+...++. +...-+.++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy-------IkA~Dps~y~eVi~~A--~~~~~~edLv~yL~MaRk~~ke~~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY-------IKADDPSSYMEVVQAA--NTSGNWEELVKYLQMARKKARESYVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS-------CCCSCCCSSSHHHHHT--TTSSCCTTHHHHHHTTSTTCCSTTTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH-------HhCCChHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 4557888888888888887776544 22 3667788899985 8899999999988888664 677788999
Q ss_pred HHHHhcCCCCC-----CCCCHhHHHHHHHHHhcCCchhHhhhhcc
Q 035927 113 VGLAISDPFPT-----IRPDEVTYVGVLSACTHNGNETFVINSCN 152 (153)
Q Consensus 113 ~~~~~~~~~~~-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 152 (153)
-+|++.+.+.. -.||..-...+-.-|...|.++.|+-+|.
T Consensus 124 ~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 124 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp HHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 99999977773 34888888899999999999999887774
No 245
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.11 E-value=12 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 035927 5 DVISWTDIVSGYINRGQVDIARQYFAQMPE 34 (153)
Q Consensus 5 d~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 34 (153)
+...|..|-....+.|+++-|.+.|.+...
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D 62 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS 62 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence 456799999999999999999999998864
No 246
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=77.20 E-value=11 Score=23.46 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhcCChH---HHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 35 RDYVLWTAMIDGYLRVNRFR---EALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 35 ~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
++..+--.+.-+++++.+.. ++..++++..+.+- | ...-+.=.+.. .+.|.|+.+.|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAv-g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAV-GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHH
Confidence 34444444445566665444 37777777766531 3 23333333333 25778888888877777765
No 247
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.41 E-value=20 Score=26.23 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFA 30 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~ 30 (153)
.|.++..-|.+.+++++|.+++-
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 56777888888888888888763
No 248
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=75.96 E-value=11 Score=23.22 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNR--FREALTLFPEMQTSNIRP 70 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p 70 (153)
..+.++.-|...|+.++|.+.++++..| .......+..++=+.++ -+.+..++..+.+.|+-+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3678899999999999999999999877 33445555556655532 466778888887776533
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.54 E-value=13 Score=27.78 Aligned_cols=89 Identities=13% Similarity=0.051 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC----C-C----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCChhHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPE----R-D----YVLWTAMIDGYLRVNRFREALTLFPEMQTS--NIRPDEFTIVRIL 79 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~----~-~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~li 79 (153)
.+...|...|++.+|..++.++.+ . | ...|-.-+..|...+++.++...+...+.. .+.|+... ...|
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i-~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV-QGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH-HHHH
Confidence 578899999999999888888863 1 1 235777788888899999999999888643 23233322 2333
Q ss_pred HHH---HHh-ccCChHHHHHHHHhc
Q 035927 80 TAY---MYC-KCGDVEKAQRVLRKM 100 (153)
Q Consensus 80 ~~~---~~~-~~g~~~~a~~~~~~m 100 (153)
+.| ++. ..+++..|...|-+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHH
Confidence 333 566 899999998887665
No 250
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=74.36 E-value=12 Score=23.12 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC--hHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
..+.++.-|...|+.++|..-++++....+ -......++..+ +-+.++ -+.+.+++..+.+.+..+-..+..|+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~a--lE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMV--LESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHH--HHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHH--HcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 356789999999999999999999863322 223444555555 355543 466788888887777777777777766
Q ss_pred hc
Q 035927 117 IS 118 (153)
Q Consensus 117 ~~ 118 (153)
+-
T Consensus 86 ~v 87 (129)
T 2nsz_A 86 RI 87 (129)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 251
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.79 E-value=15 Score=23.58 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcccCChhhHHHHHH
Q 035927 54 REALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDKFTWTAMIV 113 (153)
Q Consensus 54 ~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~ 113 (153)
+++.++|..|.+.|+.. -+..|...-.. +...|++++|.++|..-++.+...-.-|..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~--lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGH--LEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 34889999999999865 44555555555 699999999999999987765444433333
No 252
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=73.24 E-value=25 Score=25.80 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE--R-DYVLWTAMIDGYLRVN-RFREALTLFPEMQTSNIRPDEFTIVRILTAYMY 84 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~ 84 (153)
++.+-....+.+.-++|+++++++.. | +...|+.--..+...| .+++++++++.+...+- =+...|+.--.. +
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wl--L 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLL--L 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHH--H
Confidence 33334444556667889999999973 3 6677887777777777 59999999999987642 245556555544 3
Q ss_pred hcc-C-ChHHHHHHHHhcccC---ChhhHHHHHHHHHhc
Q 035927 85 CKC-G-DVEKAQRVLRKMLRK---DKFTWTAMIVGLAIS 118 (153)
Q Consensus 85 ~~~-g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~ 118 (153)
.+. + ++++++++++++.+. |...|+...-.+.+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l 172 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF 172 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 454 6 889999999999765 566666544444433
No 253
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.08 E-value=8.8 Score=26.38 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhcccCC
Q 035927 54 REALTLFPEMQTSNIRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104 (153)
Q Consensus 54 ~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~ 104 (153)
+++.++|..|.+.||.-. +..|...-.. +...|++++|.++|..-++..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~--lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANY--FESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcC
Confidence 477799999999988654 4555555555 699999999999999876653
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.37 E-value=26 Score=24.84 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=61.8
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCChhHHH-HHHHHHHHhccCChHHHHHHHHhccc--C----ChhhHHHHHHHHHh
Q 035927 45 DGYLRVNRFREALTLFPEMQTSNIRPDEFTIV-RILTAYMYCKCGDVEKAQRVLRKMLR--K----DKFTWTAMIVGLAI 117 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~-~li~~~~~~~~g~~~~a~~~~~~m~~--~----~~~~~~~li~~~~~ 117 (153)
..+.+.|++++|++-...-++. .|...... .+++. +|-.|+|+.|.+-++...+ | ....|..+|.+=..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqL--Lcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIEL--LCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH
Confidence 4456788888888888877766 35444444 44454 6889999998888777743 2 34466666666433
Q ss_pred c-CCCCC------CCCCHhHHHHHHHHHh--cCCchhHhhhh
Q 035927 118 S-DPFPT------IRPDEVTYVGVLSACT--HNGNETFVINS 150 (153)
Q Consensus 118 ~-~~~~~------~~p~~~t~~~ll~~~~--~~g~~~~a~~~ 150 (153)
+ ..|.| +.....-...++++.. ..|+.++|.++
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~l 122 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 122 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 3 44441 1112234445555554 46777776543
No 255
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=68.84 E-value=21 Score=23.15 Aligned_cols=65 Identities=6% Similarity=0.017 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHhhCCCCCC-hhHHHHHHHHH----HHhccCChHHHHHHHHhcc
Q 035927 36 DYVLWTAMIDGYLRVNRF------REALTLFPEMQTSNIRPD-EFTIVRILTAY----MYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~-~~t~~~li~~~----~~~~~g~~~~a~~~~~~m~ 101 (153)
|..+|=..+...-+.|++ ++.+++|++.... ++|+ ...+...|... .|...+++++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455555555555555666 6666666655442 3332 12222222211 2344566666666666664
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.07 E-value=51 Score=28.09 Aligned_cols=108 Identities=13% Similarity=0.099 Sum_probs=74.8
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC--------------------------CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 13 VSGYINRGQVDIARQYFAQMPER--------------------------DYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~--------------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
-.++...|++++|.+.|.+.... -..=|.-++..|-+.+.++.+.++-....+.
T Consensus 849 g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 849 ALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34677789999999999887521 0112677788888889888888877766543
Q ss_pred CC-C-CCh--hHHHHHHHHHHHhccCChHHHHHHHHhcccC--ChhhHHHHHHHHHhcCCCC
Q 035927 67 NI-R-PDE--FTIVRILTAYMYCKCGDVEKAQRVLRKMLRK--DKFTWTAMIVGLAISDPFP 122 (153)
Q Consensus 67 ~~-~-p~~--~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~~~~~ 122 (153)
.- . ++. ..|..++++ ..+.|++++|...+-.+..+ -......++..+|..+.++
T Consensus 929 ~~~~~~~~~~~l~~~iFk~--~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKT--ACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHH--HHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHH
T ss_pred ccCCChhhHHHHHHHHHHH--HHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChh
Confidence 21 1 111 246778888 58999999999999877543 2445666777777775554
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=66.96 E-value=8.9 Score=24.41 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCC--hHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 9 WTDIVSGYINRGQ--VDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 9 ~~~li~~~~~~g~--~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
|++---.|+..-+ .=+..+-+..+- -|++....+.+++|-+.+++..|..+|+-.+.+- .+....|..+++-
T Consensus 54 FdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 54 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 4444444444443 223333333333 4788899999999999999999999998887542 3445678888876
No 258
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=66.45 E-value=18 Score=22.35 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=39.0
Q ss_pred CchhHHHHHHHHHHhcCChHH---HHHHHHhCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 4 KDVISWTDIVSGYINRGQVDI---ARQYFAQMPERD-----YVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
|+..+--.+.-++.+.++..+ ++.+++.+...+ ....-.|--++.+.|++++|...++.+++.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444455556666665544 777777765432 223444555666888888888888888764
No 259
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=65.59 E-value=16 Score=21.28 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=16.9
Q ss_pred CChHHHHHHHHhcccCChhhHHHHHHHHHh
Q 035927 88 GDVEKAQRVLRKMLRKDKFTWTAMIVGLAI 117 (153)
Q Consensus 88 g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 117 (153)
.+.+.|.++++.+.+++...|..++.++..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~e 80 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLED 80 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 345666666666666655555555555543
No 260
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=65.31 E-value=12 Score=23.91 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC--hHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
..+.+|.-|...|+.++|..-++++....+ -......++..+ +-+.++ -+.+.+++..+.+.+..+-..+..|+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~a--lE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~ 87 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMV--LESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHH--HHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHH--HcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 457789999999999999999999863222 123444455555 355433 456777777777666666666666665
Q ss_pred hc
Q 035927 117 IS 118 (153)
Q Consensus 117 ~~ 118 (153)
+-
T Consensus 88 ~v 89 (152)
T 2ion_A 88 RI 89 (152)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 261
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=65.19 E-value=25 Score=22.76 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--ChhHHHHHHH-HH---HHhccCChHHHHHHHHhcc
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRP--DEFTIVRILT-AY---MYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~t~~~li~-~~---~~~~~g~~~~a~~~~~~m~ 101 (153)
|..-+..| +.|++=+|.+++++.=...-.+ +...|..||+ .. ...+.|++..|..++.+..
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444444 4599999999999985443345 5677888888 22 3567899999999988874
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.40 E-value=61 Score=27.66 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
...++..+.+.+..+.+.++....+.....+ -.+-..+...|++++|.+.|.+.
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHH-HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCcHHH-HHHHHHHHhcCCHHHHHHHHHHH
Confidence 3345566666777777777665554432222 33445556677888887777554
No 263
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=64.15 E-value=55 Score=26.31 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=60.9
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCH--HHHHHHHHHHHhcC---------------C-hHHHHHHHHHHhhC-----CCC-
Q 035927 14 SGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVN---------------R-FREALTLFPEMQTS-----NIR- 69 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~li~~~~~~~---------------~-~~~a~~~~~~m~~~-----~~~- 69 (153)
.-+...|++++|..+|+-..+.|. ...|.+++-....- + ...|..+.+..... .+.
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 356688999999999999987654 35666666655321 1 24566666554433 332
Q ss_pred CChhHHHHHHHHH---HHhccCChHHHHHHHHhc
Q 035927 70 PDEFTIVRILTAY---MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 70 p~~~t~~~li~~~---~~~~~g~~~~a~~~~~~m 100 (153)
.+..||..|++.. .+...|+++.|++.++++
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 2567788877765 457899999999999998
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=63.79 E-value=14 Score=26.18 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=49.5
Q ss_pred HHHHhcCChHHHHHHHHhCC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCChhHHHHHHHH
Q 035927 14 SGYINRGQVDIARQYFAQMP--ER-DYVLWTAMIDGYLRVNRFREALTLFPEMQTSN--IRPDEFTIVRILTA 81 (153)
Q Consensus 14 ~~~~~~g~~~~a~~l~~~m~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~ 81 (153)
....+.|+++++++-...-. +| |...=..++..+|-.|+++.|..-++...+.. ..|-..+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 44567788888777665443 34 77777888888999999999998888876542 45566677777776
No 265
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.11 E-value=46 Score=25.06 Aligned_cols=139 Identities=9% Similarity=0.069 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC----C-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC--hh
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE----R-----DYVLWTAMIDGYLRVNRFREALTLFPEMQTS----NIRPD--EF 73 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~ 73 (153)
...|.+.+...|++.+|..++..+.. . -...|-.-++.|...+++.+|..++...... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45678889999999999999999862 1 3457888899999999999999999987531 11222 12
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhccc-----CChhhHHHHHHHHHhc------CCCC----------CCCCCHhHHH
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKMLR-----KDKFTWTAMIVGLAIS------DPFP----------TIRPDEVTYV 132 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~li~~~~~~------~~~~----------~~~p~~~t~~ 132 (153)
-+...+.. +...+++.+|-+.|..+-+ .|...+...+....-. +... ...++...+.
T Consensus 220 ~~~~~~~~--~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~ 297 (445)
T 4b4t_P 220 YYNLLVKI--SLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQE 297 (445)
T ss_dssp HHHHHHHH--HHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHH
T ss_pred HHHHHHHH--HHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHH
Confidence 33334443 6788999988888877732 2443343333322111 2111 2224566778
Q ss_pred HHHHHHhcC--CchhHhhh
Q 035927 133 GVLSACTHN--GNETFVIN 149 (153)
Q Consensus 133 ~ll~~~~~~--g~~~~a~~ 149 (153)
.++++|... ..++.+.+
T Consensus 298 ~L~k~f~~~~L~~~~~~~~ 316 (445)
T 4b4t_P 298 SLVKLFTTNELMRWPIVQK 316 (445)
T ss_dssp HHHHHHHHCCSSSHHHHHH
T ss_pred HHHHHHHhchHhhhHHHHH
Confidence 888888643 33444443
No 266
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=62.27 E-value=12 Score=21.85 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 51 NRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
...++|..+++.+..+|- ..|..++.+ +...|+.+.|..
T Consensus 51 t~~~~ar~Lld~L~~rG~----~Af~~F~~a--L~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGS----QALPLFISC--LEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCT----THHHHHHHH--HHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCh----HHHHHHHHH--HHHcCcHHHHHH
Confidence 345666666666665442 456666666 344455555543
No 267
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=58.37 E-value=41 Score=23.09 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC-----C-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHH
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPE-----R-----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRIL 79 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~-----~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li 79 (153)
-.-++.+....++++|..+.++.++ + +...-...++.-+....-.-+..+.+++.. .++.......+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 3456777778888888777776642 1 112223334433433333444445555532 34555566666
Q ss_pred HHHHHhccCChHHHHHHHHhcc
Q 035927 80 TAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
.. +.|.|+.+.|..+|-+..
T Consensus 99 ~~--L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 EN--MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HH--HHHTTCHHHHHHHHHHHH
T ss_pred HH--HHHCCChhHHHHHHHHHH
Confidence 66 477888888887776543
No 268
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=57.52 E-value=20 Score=18.99 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=13.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCC
Q 035927 49 RVNRFREALTLFPEMQTSNIRPD 71 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~ 71 (153)
..|+++.|.+.+..|...+.+|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34566666666666655555554
No 269
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=56.51 E-value=38 Score=27.70 Aligned_cols=53 Identities=15% Similarity=0.003 Sum_probs=44.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCC-ChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 45 DGYLRVNRFREALTLFPEMQTSNIRP-DEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 45 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+.|...|+++-|+.+-++.... .| +-.+|..|... |.+.|+++.|+-.+..++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~v--Yi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARC--HIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH--HHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHH--HHHhccHHHHHHHHhcCC
Confidence 4455689999999999988764 45 57788888887 799999999999999995
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=56.02 E-value=58 Score=23.97 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVNR--FREALTLFPEMQTSNI 68 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~ 68 (153)
.+.+|.-|...|+.++|.+.++++..|. ......+..++-+.++ -+...+++..+.+.|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 4666777777777777777777776552 2334444444444322 3445566666665554
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.55 E-value=39 Score=21.89 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-hhHHHHHHHHHHHhccCChHHHHHHHHhcccCC
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD-EFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKD 104 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~ 104 (153)
|..-....|..--.. +++.++|..|.+.|+.-. +..|...-.. +...|++.+|.++|..-++.+
T Consensus 62 D~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~--lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEE--YEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcC
Confidence 555544444322223 347789999999998654 4455555555 699999999999999887653
No 272
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.11 E-value=55 Score=23.46 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNR--FREALTLFPEMQTSNIRP 70 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p 70 (153)
.+.++.-|...|+.++|.+.++++..| .......+..++=+.++ -+....++..+.+.|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 567788888888888888888888776 23344555555544432 455667777777666533
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.75 E-value=64 Score=24.06 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--------CCHHHHHHHHHHHHhc-CChHHHHHHHHHHhhC----CCC-CChh
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE--------RDYVLWTAMIDGYLRV-NRFREALTLFPEMQTS----NIR-PDEF 73 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~--------~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~-p~~~ 73 (153)
....|...|.+.|+.++..+++...+. .+.-....||+.+... +..+.-.++..+..++ .-. ....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999998874 1445567777777664 3334334444444322 110 1111
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 74 TIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 74 t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
.=.-+... |...|++.+|.+++.++.
T Consensus 101 l~~kL~~l--~~~~~~y~~a~~~i~~l~ 126 (394)
T 3txn_A 101 LEARLIAL--YFDTALYTEALALGAQLL 126 (394)
T ss_dssp HHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHhhhHHHHHHHHHHHH
Confidence 12233443 677777777777776664
No 274
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=54.01 E-value=21 Score=18.37 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 035927 56 ALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 56 a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
..+-+.+|...|+.-+--=.+.++. .+.|++..|++++..
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~----~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQ----TKNYDIGAALDTIQY 49 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHH----HTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHH----HccCCHHHHHHHhhh
Confidence 3456678999998654444466665 689999999988754
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=53.91 E-value=61 Score=26.06 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=46.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCChhHHHHHHHHHHHh---ccC
Q 035927 13 VSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNI-RPDEFTIVRILTAYMYC---KCG 88 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~li~~~~~~---~~g 88 (153)
..++.=.|+++.|.+++.+....+.+++.+.+.-+ |-+.. -+.+..... .| ...|..||.. |. +..
T Consensus 301 f~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~---gLL~~----~~~lls~~~~~~-~lN~arLI~~--Yt~~F~~t 370 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASL---KLFKI----DSSTRLTKKPKR-DIRFANILAN--YTKSFRYS 370 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHT---TC----------------------CHHHHHHH--HHTTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHc---CCccC----CCcccccCCCcc-cccHHHHHHH--HHHHhhcC
Confidence 44556679999999999988444677776666643 33322 111221110 22 4557778877 44 566
Q ss_pred ChHHHHHHHHhcccCC
Q 035927 89 DVEKAQRVLRKMLRKD 104 (153)
Q Consensus 89 ~~~~a~~~~~~m~~~~ 104 (153)
++.+|.+.|--+.-++
T Consensus 371 d~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 371 DPRVAVEYLVLITLNE 386 (661)
T ss_dssp CHHHHHHHHHGGGGSC
T ss_pred CHHHHHHHHHHHhccC
Confidence 7888888888775443
No 276
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.34 E-value=11 Score=19.95 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=17.4
Q ss_pred CChHHHHHHHHHHhhCC-CCCCh
Q 035927 51 NRFREALTLFPEMQTSN-IRPDE 72 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~-~~p~~ 72 (153)
=+++.|...|.++...| ++|+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 48999999999998765 66554
No 277
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.15 E-value=52 Score=22.57 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 24 IARQYFAQMP-ERDYVLWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 24 ~a~~l~~~m~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
.+..+.+.+. ......-...+..+.+-|+.++|.++|-+.+.
T Consensus 77 L~~~L~~~l~~~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 77 ISSKLSQSILSSNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3344443332 23455566666777777777777777776664
No 278
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=52.55 E-value=63 Score=23.33 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCC---HHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERD---YVLWTAMIDGYLRVN-RFREALTLFPEMQTSNI 68 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~ 68 (153)
-.+.++.-|...|++++|.+.++++..|. ......+..++-+.. .-+.+-.++..+.+.|+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 36788999999999999999999998774 233334444333322 24556667777776665
No 279
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=52.23 E-value=49 Score=22.73 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhhCCCCCCh--hHHH-----HHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 53 FREALTLFPEMQTSNIRPDE--FTIV-----RILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~--~t~~-----~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
++.|+.+|+.+...--.|+. .... ..+-.| .+.|.+++|.+++++..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VC--iek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIIC--IKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHHhcC
Confidence 68999999999754322221 1111 233344 8999999999999998654
No 280
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=52.03 E-value=15 Score=19.51 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.++|.+.|.+|++..-.++.-||...|+.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~ 30 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISE 30 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 46888999999755434555899999998
No 281
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=49.96 E-value=74 Score=23.39 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCC----HHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCC
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERD----YVLWTAMIDGYLRVN-RFREALTLFPEMQTSNI 68 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~----~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~ 68 (153)
.-..+|.-|...|++++|.+.++++..|+ ...+..+..++-+.. .-+.+-.++..+...|+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 46789999999999999999999998875 234444444443332 23455566666666655
No 282
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=47.91 E-value=51 Score=20.90 Aligned_cols=90 Identities=10% Similarity=0.296 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC-ChhHHHHHHHHH--
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPE-RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS-NIRP-DEFTIVRILTAY-- 82 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p-~~~t~~~li~~~-- 82 (153)
-++.++..+...|-+++...-+..|.. .+......++..|.. ++...+..+... .-.| |......+.+.+
T Consensus 9 ~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~-----d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKG 83 (153)
T 3us6_A 9 QWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFD-----DSERILKDLSFAVDQQSIDFKKVDAHVHQFKG 83 (153)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHH-----HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 367778888889999977777777764 355566666666643 233333333221 0011 333332222222
Q ss_pred ------------------HHhccCChHHHHHHHHhccc
Q 035927 83 ------------------MYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 83 ------------------~~~~~g~~~~a~~~~~~m~~ 102 (153)
.+++.|+.+.+...+..+.+
T Consensus 84 ss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 84 SSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788888888888887765
No 283
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=45.87 E-value=22 Score=21.95 Aligned_cols=51 Identities=6% Similarity=-0.115 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
|-..|...+.+++.+-|+++++-+++.| +...|.+++-.| ...=+++.+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytC--YdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTC--YDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHH--TTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHH--HhccChHHHHH
Confidence 4445555566666666666766666654 344555666555 33334444433
No 284
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=45.46 E-value=46 Score=19.70 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.-.|.++.+++..-|+.|+.....-++..|
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC 54 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELC 54 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 346778889999999999999999999986
No 285
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.21 E-value=45 Score=20.29 Aligned_cols=47 Identities=23% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~ 90 (153)
.+++.+...+..-.|.++++.+++.+...+..|.--.++. +...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~--L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQS--MASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHH--HHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHH--HHHCCCE
Confidence 4556666666667788888888877666677776666666 4666654
No 286
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=44.98 E-value=42 Score=19.09 Aligned_cols=40 Identities=15% Similarity=0.076 Sum_probs=23.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHH
Q 035927 50 VNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQR 95 (153)
Q Consensus 50 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~ 95 (153)
....++|..+++.+.++| ...|..++.+ +.+.+....|..
T Consensus 49 ~t~~~kar~Lld~l~~kG----~~af~~F~~a--L~~~~~~~La~~ 88 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKD----NDSYVSFYNA--LLHEGYKDLAAL 88 (94)
T ss_dssp SSHHHHHHHHHHHHTTSC----HHHHHHHHHH--HHHTTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHcC----HHHHHHHHHH--HHHcCHHHHHHH
Confidence 455667777776666544 3566777776 355555444443
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.96 E-value=1e+02 Score=23.10 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
......++..|.+.|+++...+.+..+.
T Consensus 56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 56 KEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3456778888888888888766555443
No 288
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.77 E-value=38 Score=25.31 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSN--IRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+...+...+.+.|++++|.+.+.+++..- .+--...+-..|+.+ ...+++..+.....+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~--l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLG--FFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHH--HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH--HHhccHHHHHHHHHHHH
Confidence 46678888889999999999999998643 333445666677774 78889999988888873
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.72 E-value=46 Score=24.50 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC--hHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
..+.+|.-|...++.++|..-++++....+.+ .....++..+ +-+.++ -+.+.+++..+.+.+..+=+.+..|+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~a--LE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMV--LESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHH--HHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHH--HccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46888999999999999999999997432222 3344555555 465443 456788888887777777777777766
Q ss_pred hc
Q 035927 117 IS 118 (153)
Q Consensus 117 ~~ 118 (153)
+-
T Consensus 296 ~v 297 (358)
T 3eiq_C 296 RI 297 (358)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 290
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.18 E-value=42 Score=20.75 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=31.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh
Q 035927 42 AMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 42 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~ 90 (153)
.+++.+...+..-.|.++++.+.+.+-..+..|.=-.|+. +...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~--L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQS--LADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHH--HHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHCCCE
Confidence 4556666665566788888888877666677776666666 4666654
No 291
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=38.78 E-value=33 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.421 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPER 35 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~ 35 (153)
-|.|+..|...|+++.|.+++.+++..
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 478999999999999999999999864
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=38.60 E-value=75 Score=20.21 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=70.7
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.||..+-...+.++++.|..+....+.+.+..++...=...+.++.+.++.+ +...+..+... ++...=...+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~a- 99 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALKD---EDGWVRQSAAVA- 99 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SSHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHcC---CCHHHHHHHHHH-
Confidence 4566666666777777777666667777777777766666667777766543 33444444432 566666666666
Q ss_pred HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhcCC
Q 035927 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAISDP 120 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~~~ 120 (153)
+.+.|+.+....+.+.+..++...-...+.++.+.+.
T Consensus 100 -L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 100 -LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred -HHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4777776666666666666666666666666666543
No 293
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=38.43 E-value=64 Score=19.37 Aligned_cols=81 Identities=19% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-C---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMP-E---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILTAYM 83 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~ 83 (153)
+.+...++.|+.+.+..+++.-. . .+..-++.+.. +..|+.+-+.. +.+.|..+ |....+.+..+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A-- 75 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAIALE----LLKQGASPNVQDTSGTSPVHDA-- 75 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHH--
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHHHHHH----HHHCCCCCCCcCCCCCCHHHHH--
Confidence 45666778899999999998821 2 23334444444 66777664444 44455433 44455666666
Q ss_pred HhccCChHHHHHHHHhc
Q 035927 84 YCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m 100 (153)
++.|+.+-+..+++.-
T Consensus 76 -~~~~~~~~v~~Ll~~g 91 (156)
T 1bd8_A 76 -ARTGFLDTLKVLVEHG 91 (156)
T ss_dssp -HHTTCHHHHHHHHHTT
T ss_pred -HHcCcHHHHHHHHHcC
Confidence 7788888777777754
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.14 E-value=54 Score=20.95 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 035927 23 DIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 23 ~~a~~l~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 72 (153)
+++..+|..|.+. -..-|-..-..+-..|++++|..+|+.-++.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3466666666543 3455777778888899999999999999998888843
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=37.04 E-value=56 Score=20.00 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=22.6
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC
Q 035927 43 MIDGYLRVN-RFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 43 li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~ 89 (153)
+++.+...+ ..-.|.++++.+++.+-..+..|.---++. +.+.|-
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~--L~e~Gl 68 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQ--FEAAGL 68 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHH--HHHHTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHH--HHHCCc
Confidence 344444443 444566666666665544555555445554 344443
No 296
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.45 E-value=83 Score=23.97 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--------ChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP--------DEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--------~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
...|.|++.|.+.++++.|..+++.+...+..| ..++|.=.++-. +...+++.+|.+-+...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~-~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRY-YLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHH-HHHHccHHHHHHHHHHH
Confidence 357889999999999999999999998876633 334555555553 77889999988776654
No 297
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=36.04 E-value=53 Score=17.75 Aligned_cols=43 Identities=7% Similarity=-0.072 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 38 VLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 38 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
..++.+++.++...-+++++-.+++..+.|. .+..+|---++.
T Consensus 3 pl~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~ 45 (65)
T 2f6m_A 3 DGLNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRE 45 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3567788888887778888888888888773 566666655555
No 298
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=35.38 E-value=1e+02 Score=22.80 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHHhcCC--hHHHHHHHHhCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC
Q 035927 4 KDVISWTDIVSGYINRGQ--VDIARQYFAQMPE---RDYVLWTAMIDGYLRVNRFREALTLFPEMQTS 66 (153)
Q Consensus 4 pd~~~~~~li~~~~~~g~--~~~a~~l~~~m~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 66 (153)
++..+|-.||.-+....+ .+++..+++.|.. ++...=.-|+-...|....++-..+.+.|++.
T Consensus 21 ~~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~ 88 (377)
T 3r88_A 21 ASVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSH 88 (377)
T ss_dssp ---CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHh
Confidence 344567777777776665 4677777777753 23343344444455555667666666667653
No 299
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=34.94 E-value=82 Score=20.23 Aligned_cols=69 Identities=9% Similarity=0.119 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCH--HHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERDY--VLWTAMIDGYLRVNR--FREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
....+|.-|...|+.++|...++++..|+. .....+|..-...++ -+.+-.++..+.. +..+-..+.++
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-----~~ls~~~i~~G 84 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-----TVMSTTDVEKS 84 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-----TTBCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----CCCCHHHHHHH
Confidence 357788999999999999999999987742 222333332223332 2344455555532 44455555555
No 300
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.19 E-value=58 Score=23.35 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC--hHHHHHHHHhcccCChhhHHHHHHHHH
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD--VEKAQRVLRKMLRKDKFTWTAMIVGLA 116 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~ 116 (153)
-.+.++.-|...|+.++|..-++++....+.+ .....++..+ +.+.++ .+.+.+++..+.+.+..+-+.+..|+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~a--lE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMV--LESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHH--HTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHH--HccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 46788888889999999999999997432222 3444455555 355433 455777787777666666666666665
Q ss_pred hc
Q 035927 117 IS 118 (153)
Q Consensus 117 ~~ 118 (153)
+-
T Consensus 245 ~v 246 (307)
T 2zu6_B 245 RI 246 (307)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.07 E-value=1.7e+02 Score=22.87 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCH-HHHHHHH-------HHHHhcCChHHHHHHHHHHhh
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPERDY-VLWTAMI-------DGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~li-------~~~~~~~~~~~a~~~~~~m~~ 65 (153)
...+|.++..|...+.+++|..+..+..-|.. .+-+..+ +-+.-.+++.+|.+.+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34689999999999999999999999875521 2222222 222345778888887776654
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.05 E-value=1.7e+02 Score=22.87 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH-----HHhccCChHHHHHHHHhcc
Q 035927 37 YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY-----MYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 37 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~-----~~~~~g~~~~a~~~~~~m~ 101 (153)
...+|.+++.|...+.++.|..+..... ++....+-+..++.+ .+.-.+++.+|.+-+....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4579999999999999999999999875 221222223333221 2567889999998888753
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.03 E-value=72 Score=20.55 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=8.9
Q ss_pred hccCChHHHHHHHHh
Q 035927 85 CKCGDVEKAQRVLRK 99 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~ 99 (153)
++.|+.+-+..+++.
T Consensus 117 ~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHhc
Confidence 566666655555554
No 304
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.94 E-value=88 Score=19.34 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=16.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 44 IDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 44 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
++.+...+..-.|.++++.+++.+-..+..|.--.|+.
T Consensus 28 l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~ 65 (145)
T 2fe3_A 28 LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRV 65 (145)
T ss_dssp HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 33333333334455555555544433444444444444
No 305
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=32.90 E-value=1.4e+02 Score=21.51 Aligned_cols=63 Identities=11% Similarity=0.252 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHH----HHHHHhhCCCCCChhHHHHHHHH
Q 035927 8 SWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALT----LFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 8 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
.|.++..-|.+.+++++|.+++. . -...+.+.|+...|-+ +++...+.++++|......++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~----------~-ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS----------Q-GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----------H-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH----------H-HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 35555555666666666666552 1 1223345666555444 45555667888888888888876
No 306
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=32.09 E-value=1.4e+02 Score=21.49 Aligned_cols=94 Identities=9% Similarity=0.035 Sum_probs=69.3
Q ss_pred hHHHHHHHHhCCC--C-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC-hHHHHH
Q 035927 22 VDIARQYFAQMPE--R-DYVLWTAMIDGYLRVN--RFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD-VEKAQR 95 (153)
Q Consensus 22 ~~~a~~l~~~m~~--~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~-~~~a~~ 95 (153)
++++..+++.+.. | +..+|+.=--.+.+.+ .+++++++++.+.+... -|-..|+---.. +.+.|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~v--l~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFV--AAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH--HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH--HHHhCcCHHHHHH
Confidence 6788888888763 3 7777877766666767 48999999999987642 356666655554 467777 589999
Q ss_pred HHHhccc---CChhhHHHHHHHHHhc
Q 035927 96 VLRKMLR---KDKFTWTAMIVGLAIS 118 (153)
Q Consensus 96 ~~~~m~~---~~~~~~~~li~~~~~~ 118 (153)
.++++.+ .|...|+.....+...
T Consensus 167 ~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 167 FTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999865 3788888877766655
No 307
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=31.85 E-value=88 Score=18.97 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHH
Q 035927 10 TDIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILTAY 82 (153)
Q Consensus 10 ~~li~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~ 82 (153)
.+.+...++.|+++....+++.-.. .+..-++.|. ..+..|+.+ +++.+.+.|..+ |....+.+..+
T Consensus 9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A- 82 (165)
T 3twr_A 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNA- 82 (165)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH-
T ss_pred hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHH-
Confidence 3445566778888888888875431 1222233333 344667654 444455555544 33444566665
Q ss_pred HHhccCChHHHHHHHHhc
Q 035927 83 MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m 100 (153)
++.|+.+-+..+++.-
T Consensus 83 --~~~~~~~~v~~Ll~~g 98 (165)
T 3twr_A 83 --CSYGHYEVAELLVKHG 98 (165)
T ss_dssp --HHTTCHHHHHHHHHTT
T ss_pred --HHcCcHHHHHHHHhCC
Confidence 7788888777777654
No 308
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.48 E-value=66 Score=17.44 Aligned_cols=9 Identities=0% Similarity=0.357 Sum_probs=3.8
Q ss_pred HhhCCCCCC
Q 035927 63 MQTSNIRPD 71 (153)
Q Consensus 63 m~~~~~~p~ 71 (153)
|.+.|++++
T Consensus 8 l~~~g~~~t 16 (83)
T 2fu4_A 8 LKKAGLKVT 16 (83)
T ss_dssp HHHTTCCCC
T ss_pred HHHcCCCcC
Confidence 334444444
No 309
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.06 E-value=1.2e+02 Score=20.36 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=42.4
Q ss_pred CChHHHHHHHHhCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh
Q 035927 20 GQVDIARQYFAQMPER-----DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE 72 (153)
Q Consensus 20 g~~~~a~~l~~~m~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 72 (153)
+...++..+|.-|... -..-|-.....+-..|++.+|..+|+.-++.+-+|-.
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3356888888888632 4556888888888999999999999999999888843
No 310
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=30.75 E-value=55 Score=21.63 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
-.=.+|.|+.+.|++++|.+++.++..
T Consensus 34 NkLqvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 34 NKLQLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344689999999999999999988864
No 311
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.00 E-value=52 Score=22.61 Aligned_cols=82 Identities=9% Similarity=0.033 Sum_probs=46.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHHHHhccC
Q 035927 12 IVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~~~g 88 (153)
.+...++.|+.+-+..+++.-..++...-.+.+...+..|+.+-+. .+.+.|..+ |....+.+..+ ++.|
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A---~~~g 106 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYA---VDSG 106 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHH---HHTT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHH---HHcC
Confidence 3455666788888888877643222211123344445667665443 334445433 34445556655 6778
Q ss_pred ChHHHHHHHHhc
Q 035927 89 DVEKAQRVLRKM 100 (153)
Q Consensus 89 ~~~~a~~~~~~m 100 (153)
+.+-+..+++.=
T Consensus 107 ~~~~v~~Ll~~g 118 (285)
T 3kea_A 107 NMQTVKLFVKKN 118 (285)
T ss_dssp CHHHHHHHHHHC
T ss_pred CHHHHHHHHhcC
Confidence 887777777663
No 312
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=29.75 E-value=1e+02 Score=19.06 Aligned_cols=80 Identities=13% Similarity=0.074 Sum_probs=46.3
Q ss_pred HHHHHhcCChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---hhHHHHHHHHHHHh
Q 035927 13 VSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPD---EFTIVRILTAYMYC 85 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~t~~~li~~~~~~ 85 (153)
+...++.|+.+....+++.-. .++..-++.|.. .+..|+.+ +++.+.+.|..++ ....+.+..+ +
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A---~ 80 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW-ACREGRSA----VVEMLIMRGARINVMNRGDDTPLHLA---A 80 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHH---H
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHH-HHHcCcHH----HHHHHHHcCCCCCCcCCCCCCHHHHH---H
Confidence 345567788888888888743 223333444433 34566654 3444445554443 3334555555 6
Q ss_pred ccCChHHHHHHHHhc
Q 035927 86 KCGDVEKAQRVLRKM 100 (153)
Q Consensus 86 ~~g~~~~a~~~~~~m 100 (153)
..|+.+-+..+++.-
T Consensus 81 ~~~~~~~v~~Ll~~g 95 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYK 95 (179)
T ss_dssp HTTCHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcC
Confidence 778877777776653
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.60 E-value=74 Score=19.89 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=25.1
Q ss_pred HHHHHHhcC-ChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCCh
Q 035927 43 MIDGYLRVN-RFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDV 90 (153)
Q Consensus 43 li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~ 90 (153)
++..+...+ ..-.|.++++.+.+.+...+..|.---|+. +...|-+
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~--L~e~Glv 68 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQ--FDDAGIV 68 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHH--HHHTTSE
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH--HHHCCcE
Confidence 344444443 445566777777666555555555555555 3555543
No 314
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.41 E-value=1.1e+02 Score=19.37 Aligned_cols=110 Identities=11% Similarity=0.091 Sum_probs=71.5
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
.+|..+-...+.++++.|..+....+.+.+..++...=...+.++.+.++.+ +...+..+.+ .+|...=...+.+
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a- 130 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFA- 130 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHH-
Confidence 4556666667777788887777777777777788777777788888877654 3444444443 3565555666666
Q ss_pred HHhccCChHHHHHHHHhcccCChhhHHHHHHHHHhc
Q 035927 83 MYCKCGDVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 118 (153)
+.+.|+.+....+...+..++...-...+.++...
T Consensus 131 -L~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 131 -LGEIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp -HHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -HHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 47777766555555555566666556666666655
No 315
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=29.23 E-value=95 Score=18.58 Aligned_cols=38 Identities=16% Similarity=0.337 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHh
Q 035927 57 LTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 57 ~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~ 99 (153)
.+-++.+++.|+........+|.. ..|+++.|.+.+-.
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~-----t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQA-----TGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHH-----HTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH-----hCCCHHHHHHHHHh
Confidence 346688899998443444455443 37999999887653
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.83 E-value=77 Score=19.66 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCC
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGD 89 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~ 89 (153)
+++.+...+ .-.|.++++.+++.+...+..|.=--|+. +...|-
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~--L~e~Gl 67 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLEL--LEELGL 67 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHH--HHHHTS
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHH--HHHCCc
Confidence 334444444 44566777777666555555555555555 355554
No 317
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.75 E-value=93 Score=20.93 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=24.3
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 41 TAMIDGYLRV---NRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 41 ~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
-.+|++|.|+ .+.+.|+-.+.+|++.|.-|.-+.=..++-+
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3456666553 5777777777777777755554443444433
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.40 E-value=1.2e+02 Score=19.51 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC----C--CHHHHHHHHH-HHH-----hcCChHHHHHHHHHHhh
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPE----R--DYVLWTAMID-GYL-----RVNRFREALTLFPEMQT 65 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~----~--~~~~~~~li~-~~~-----~~~~~~~a~~~~~~m~~ 65 (153)
|..-+..| +.|++-+|.++++..-. + ....|..||. ..+ +.|+.+.|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444 45999999999998863 3 4567888888 222 46999999999998865
No 319
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.38 E-value=79 Score=18.23 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=28.8
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHH---HHhccCChHHHHHHHHhc
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAY---MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~---~~~~~g~~~~a~~~~~~m 100 (153)
+.|++=+|.+++++.=...-.|....|..+|+.. ...+.|+. |.+++.+-
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a 65 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKA 65 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHH
Confidence 4477878888887773332224456666666654 22355665 55555544
No 320
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=28.12 E-value=32 Score=20.63 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhhCCCCC-ChhHHH
Q 035927 53 FREALTLFPEMQTSNIRP-DEFTIV 76 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p-~~~t~~ 76 (153)
++.|.++|-+|...+..| |...||
T Consensus 17 id~AYDiFLE~A~dNL~paDillFn 41 (110)
T 1nnv_A 17 IDIAYDIFLEMAGENLDPADILLFN 41 (110)
T ss_dssp HHHHHHHHHHHCSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCHHHHHHHH
Confidence 567888888888877766 444444
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.62 E-value=27 Score=25.32 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC-ChHHHHHHHHhcccCChhhHHHHHHHHHhc
Q 035927 40 WTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG-DVEKAQRVLRKMLRKDKFTWTAMIVGLAIS 118 (153)
Q Consensus 40 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 118 (153)
...++.-|...|+.++|..-++++......| .....++..+ +-+.. .-+.+-+++..+.+.+..+-..+..||.+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~--le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~ 90 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVEST--LERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEI 90 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHH--TTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 5678888999999999999998886433212 2333333333 22222 234456666666666666666666666555
No 322
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=27.61 E-value=48 Score=23.33 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHh
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQ 64 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~ 64 (153)
.=|.+++.|...|++..|.++++.+.
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 46899999999999999999999754
No 323
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.61 E-value=1.3e+02 Score=19.94 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=13.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 035927 11 DIVSGYINRGQVDIARQYFAQM 32 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m 32 (153)
+.+...++.|+++....+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHHHHcC
Confidence 4455556666666666666654
No 324
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.31 E-value=1.3e+02 Score=19.41 Aligned_cols=88 Identities=14% Similarity=0.053 Sum_probs=57.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC---------CChhHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR---------PDEFTIVRI 78 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------p~~~t~~~l 78 (153)
+.+...++.|+.+-+..+++.-..+ |..-.+. +...+..|+.+-+..+++.+.+.|.. .|....+.+
T Consensus 123 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl 201 (232)
T 2rfa_A 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV-LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201 (232)
T ss_dssp SHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH-HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH
Confidence 3455566778888888888764332 3223333 34445778888887888888877753 355566666
Q ss_pred HHHHHHhccCChHHHHHHHHhccc
Q 035927 79 LTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 79 i~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
--+ ++.|+.+-+..++++=..
T Consensus 202 ~~A---~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 202 KLA---GVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHH---HHHTCHHHHHHHHHHHHH
T ss_pred HHH---HHcCCHHHHHHHHhcCcc
Confidence 666 788888887777776533
No 325
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=27.01 E-value=36 Score=17.42 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHhhCCCCCC
Q 035927 51 NRFREALTLFPEMQTSNIRPD 71 (153)
Q Consensus 51 ~~~~~a~~~~~~m~~~~~~p~ 71 (153)
.++..|.++++..+++|-.|+
T Consensus 7 RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 357789999999998887665
No 326
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=26.81 E-value=1.1e+02 Score=20.72 Aligned_cols=86 Identities=7% Similarity=0.078 Sum_probs=50.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC---CChhHHHHHHHHHHH
Q 035927 12 IVSGYINRGQVDIARQYFAQMP----ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIR---PDEFTIVRILTAYMY 84 (153)
Q Consensus 12 li~~~~~~g~~~~a~~l~~~m~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~t~~~li~~~~~ 84 (153)
.+...++.|+.+-+..+++.-. ..|..-++.+..+.........-.++++.+.+.|.. .|....+.+..+
T Consensus 114 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A--- 190 (276)
T 4hbd_A 114 ALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLA--- 190 (276)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHH---
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHH---
Confidence 4455667888888888888654 224444555555444333334444555555555533 233445666665
Q ss_pred hccCChHHHHHHHHhc
Q 035927 85 CKCGDVEKAQRVLRKM 100 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~m 100 (153)
++.|+.+-+..+++.=
T Consensus 191 ~~~g~~~~v~~Ll~~g 206 (276)
T 4hbd_A 191 VSHGRVDVVKALLACE 206 (276)
T ss_dssp HHTTCHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHhCC
Confidence 7788887777777654
No 327
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=26.62 E-value=1.3e+02 Score=19.19 Aligned_cols=66 Identities=9% Similarity=-0.035 Sum_probs=42.4
Q ss_pred HHHhcCChHHHHHHHHhCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCh---hHHHHHHHH
Q 035927 15 GYINRGQVDIARQYFAQMPER-D-YVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDE---FTIVRILTA 81 (153)
Q Consensus 15 ~~~~~g~~~~a~~l~~~m~~~-~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~t~~~li~~ 81 (153)
..++.|+++....++..-... + ..-++ .+...+..|+.+.-.++.+.+++.|..++. .-.+.|..+
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T-~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTT-HHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCC-HHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 346789999988888765322 2 22334 444555677777777888888888876543 445556555
No 328
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=25.98 E-value=1.1e+02 Score=20.80 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhc---CChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 36 DYVLWTAMIDGYLRV---NRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 36 ~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+...+-.+|++|.|+ .+.+.|+-.+.+|++.|.-|.-..=..++-+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~A 79 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISA 79 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444566678888864 7899999999999999977765555555555
No 329
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=25.78 E-value=45 Score=18.82 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=19.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 035927 3 NKDVISWTDIVSGYINRGQVDIARQYFAQ 31 (153)
Q Consensus 3 ~pd~~~~~~li~~~~~~g~~~~a~~l~~~ 31 (153)
+|.+.||+.+...+-+..-..+++.+..+
T Consensus 33 PpgVnTW~qI~el~qkk~i~~~~m~iik~ 61 (81)
T 2ko4_A 33 PPNINTWQQVTALAQQKLLTPQDMEAAKE 61 (81)
T ss_dssp CTTTCBHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCCCHHHHHHHHH
Confidence 58888888888776666655666555543
No 330
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.73 E-value=92 Score=17.22 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
-++++.++|+........+|. ...|+++.|.+.+-.-
T Consensus 32 qi~qL~eMGF~dr~~~~~AL~-----~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 32 ELEELKALGFANRDANLQALV-----ATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHTCCCHHHHHHHHH-----HTTSCHHHHHHHHHTC
T ss_pred HHHHHHHcCCCcHHHHHHHHH-----HhCCCHHHHHHHHHhC
Confidence 456666678733333233333 4478898888776543
No 331
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=25.71 E-value=1e+02 Score=20.46 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=7.5
Q ss_pred hccCChHHHHHHHHh
Q 035927 85 CKCGDVEKAQRVLRK 99 (153)
Q Consensus 85 ~~~g~~~~a~~~~~~ 99 (153)
++.|+.+-+..+++.
T Consensus 47 ~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 47 VQMSREDIVELLLRH 61 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHc
Confidence 455555555444443
No 332
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.46 E-value=1e+02 Score=19.76 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=14.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 035927 11 DIVSGYINRGQVDIARQYFAQMP 33 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~ 33 (153)
+.+...++.|+.+-+..+++.-.
T Consensus 27 t~L~~A~~~g~~~~v~~Ll~~g~ 49 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLLEASA 49 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTC
T ss_pred chHHHHHHcCCHHHHHHHHHcCC
Confidence 34555567777777777776643
No 333
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.43 E-value=1.6e+02 Score=19.90 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhhCCCCCChhHHH-----HHHHHHHHhccCChHHHHHHHHhccc
Q 035927 53 FREALTLFPEMQTSNIRPDEFTIV-----RILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 53 ~~~a~~~~~~m~~~~~~p~~~t~~-----~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
++.|+.+|+.+...-- +=...-. ..+-.| .+.|.+++|.++|++.-+
T Consensus 94 LESAl~v~~~I~~e~~-~lheei~~Llk~qAV~VC--iekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHD-KLHEEIQNLIKIQAIAVC--MENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCC-HHHHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHH--HHccchHHHHHHHHHHhc
Confidence 6799999988865421 1111111 223344 899999999999999643
No 334
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.29 E-value=1.2e+02 Score=19.66 Aligned_cols=83 Identities=10% Similarity=0.042 Sum_probs=53.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMP-------ERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILT 80 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~ 80 (153)
+.+...++.|+++....+++.+. ..|..-++.| ...+..|+.+ +++.+.+.|..| |....+.+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHH
Confidence 34566677899999888887322 2233334444 4455677765 444555566544 4444566666
Q ss_pred HHHHhccCChHHHHHHHHhcc
Q 035927 81 AYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 81 ~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+ ++.|+.+-+..+++...
T Consensus 86 A---~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 86 A---CEHRSPTCLRALLDSAA 103 (241)
T ss_dssp H---HHTTCHHHHHHHHHHSC
T ss_pred H---HHcCCHHHHHHHHHcCC
Confidence 5 78999999988888764
No 335
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.74 E-value=72 Score=15.67 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=20.8
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
+-+..+.+.|+........+|. ...|+++.|.+.+
T Consensus 9 ~~i~~L~~MGF~d~~~~~~AL~-----~~~gnv~~Ave~L 43 (46)
T 2bwb_A 9 HQLRQLNDMGFFDFDRNVAALR-----RSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHH-----HHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHH-----HhCCCHHHHHHHH
Confidence 3456777888733332333333 3378888887764
No 336
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.11 E-value=96 Score=21.89 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=15.1
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 035927 11 DIVSGYINRGQVDIARQYFAQM 32 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m 32 (153)
+.+...+..|+++.+..+++.=
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g 43 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETG 43 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcC
Confidence 3445556678888888888763
No 337
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=23.93 E-value=1.2e+02 Score=17.78 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHH
Q 035927 6 VISWTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRIL 79 (153)
Q Consensus 6 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li 79 (153)
...-.+.+...++.|+.+....+++.-... |..-++.|..+ +..|+.+- ++.+.+.|..+ |....+.+.
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~----v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA-TAHGHLEI----VEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCCHHH----HHHHHHcCCCCCcCCCCCCCHHH
Confidence 334566677778899999999998875432 33334444443 45566554 44444555443 444556666
Q ss_pred HHHHHhccCChHHHHHHHHh
Q 035927 80 TAYMYCKCGDVEKAQRVLRK 99 (153)
Q Consensus 80 ~~~~~~~~g~~~~a~~~~~~ 99 (153)
.+ ++.|+.+-+..+++.
T Consensus 86 ~A---~~~~~~~~v~~Ll~~ 102 (136)
T 2jab_A 86 LA---AFIGHLEIAEVLLKH 102 (136)
T ss_dssp HH---HHHTCHHHHHHHHHT
T ss_pred HH---HHcCCHHHHHHHHHc
Confidence 66 778888877777765
No 338
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.67 E-value=25 Score=21.46 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHhhCCCC-CChhHHHHHHHHH
Q 035927 52 RFREALTLFPEMQTSNIR-PDEFTIVRILTAY 82 (153)
Q Consensus 52 ~~~~a~~~~~~m~~~~~~-p~~~t~~~li~~~ 82 (153)
++++|.+.+..|++.-+. -....||.+|..+
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 567777777777655433 3566777777763
No 339
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=23.46 E-value=2.8e+02 Score=21.95 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 73 FTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 73 ~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
.-...++..| ++.|-.+.|.++++.+-
T Consensus 517 dd~e~vL~iC--a~l~L~~~ar~I~k~~g 543 (570)
T 3f3f_C 517 DDIEWMLSIC--VEWRLPEIAKEIYTTLG 543 (570)
T ss_dssp HHHHHHHHHH--HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHCCChHHHHHHHHHHH
Confidence 3444555554 55555555555555553
No 340
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.38 E-value=99 Score=16.76 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=22.5
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
-+..+.+.|+........+|. ...|+++.|.+.+-.-
T Consensus 22 ql~qL~~MGF~d~~an~~AL~-----at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 22 EMECLQAMGFVNYNANLQALI-----ATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHHTCCCHHHHHHHHH-----HTTSCHHHHHHHHHHC
T ss_pred HHHHHHHcCCCcHHHHHHHHH-----HcCCCHHHHHHHHHhC
Confidence 556677778744333344444 3478898888776543
No 341
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=23.03 E-value=83 Score=17.66 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=22.4
Q ss_pred HHHHHHHHhhCCCCCChhHHHHHHHHH
Q 035927 56 ALTLFPEMQTSNIRPDEFTIVRILTAY 82 (153)
Q Consensus 56 a~~~~~~m~~~~~~p~~~t~~~li~~~ 82 (153)
+.++-+++..-|+.|+.....-++..|
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC 31 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELC 31 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 567778888889998888888898875
No 342
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=22.93 E-value=1.2e+02 Score=17.78 Aligned_cols=75 Identities=9% Similarity=0.029 Sum_probs=40.9
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccCCh
Q 035927 26 RQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRKDK 105 (153)
Q Consensus 26 ~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~~~ 105 (153)
..+.+.+..++...=...+.++.+.++.+ +...+..+.+. +|...=...+.+ +.+.|+.+....+.+.+..+|.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~~-a~~~L~~~L~d---~~~~VR~~A~~a--L~~~~~~~a~~~L~~~l~d~~~ 118 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDER-AVEPLIKLLED---DSGFVRSGAARS--LEQIGGERVRAAMEKLAETGTG 118 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSHH-HHHHHHHHHHH---CCTHHHHHHHHH--HHHHCSHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHH--HHHhCcHHHHHHHHHHHhCCCH
Confidence 44555555666666666667777777643 44444444432 444555555666 4777765544445444444443
Q ss_pred h
Q 035927 106 F 106 (153)
Q Consensus 106 ~ 106 (153)
.
T Consensus 119 ~ 119 (131)
T 1te4_A 119 F 119 (131)
T ss_dssp H
T ss_pred H
Confidence 3
No 343
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.55 E-value=89 Score=15.95 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=21.5
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhc
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m 100 (153)
-+..+.+.|+........+|. ...|+++.|.+.+-.-
T Consensus 12 ~l~~L~~MGF~d~~~n~~AL~-----~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 12 QLEQLRSMGFLNREANLQALI-----ATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHTCCCHHHHHHHHH-----HHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHH-----HcCCCHHHHHHHHHhC
Confidence 345666667644333344444 3378888888776543
No 344
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.52 E-value=58 Score=21.08 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=53.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILTAYM 83 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~ 83 (153)
+.+...++.|+++....++..-.. ++..-++.|.. .+..|+.+- ++.+.+.|..+ |....+.+..+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A-- 80 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIA-- 80 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHH--
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHH--
Confidence 457778889999999999987542 24334444443 456677654 44444556443 44455666666
Q ss_pred HhccCChHHHHHHHHhcc
Q 035927 84 YCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 84 ~~~~g~~~~a~~~~~~m~ 101 (153)
++.|+.+-+..+++.-.
T Consensus 81 -~~~~~~~~v~~Ll~~g~ 97 (231)
T 3aji_A 81 -ASAGXDEIVKALLVKGA 97 (231)
T ss_dssp -HHHTCHHHHHHHHHTTC
T ss_pred -HHcCHHHHHHHHHHcCC
Confidence 78889888877777643
No 345
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.40 E-value=1.6e+02 Score=18.69 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhC--CCCCChhHHHHHHHH
Q 035927 43 MIDGYLRVNRFREALTLFPEMQTS--NIRPDEFTIVRILTA 81 (153)
Q Consensus 43 li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~t~~~li~~ 81 (153)
+++.+...+..-.|.++++.+.+. +...+..|.=--|+.
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~ 78 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNL 78 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 334444444444455555555444 333344443333333
No 346
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=22.07 E-value=1.8e+02 Score=19.24 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCChH---HHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---C-CC-C-ChhHHHHHHH
Q 035927 10 TDIVSGYINRGQVD---IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS---N-IR-P-DEFTIVRILT 80 (153)
Q Consensus 10 ~~li~~~~~~g~~~---~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~-~~-p-~~~t~~~li~ 80 (153)
.+.+.-+.+.|+++ +|-++...|.+.+...---+-..............++.+|+.. | -. . +..++.-|..
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~ 114 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 114 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHH
Confidence 45566788888765 6777777776433222111111111223355567788888753 1 11 2 5677777777
Q ss_pred HH
Q 035927 81 AY 82 (153)
Q Consensus 81 ~~ 82 (153)
.|
T Consensus 115 ~C 116 (186)
T 1oxz_A 115 RC 116 (186)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 347
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=21.91 E-value=97 Score=16.14 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=20.5
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLR 98 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~ 98 (153)
-++.+.+.|+........+|. ...|+++.|.+.+-
T Consensus 20 qi~~L~~MGF~d~~~~~~AL~-----~~~gnve~Ave~L~ 54 (58)
T 1wr1_B 20 QLRQLNDMGFFDFDRNVAALR-----RSGGSVQGALDSLL 54 (58)
T ss_dssp HHHHHHHHTCCCHHHHHHHHH-----HHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHH-----HhCCCHHHHHHHHH
Confidence 456677778733323233333 34788888877653
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.90 E-value=1.1e+02 Score=20.70 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=25.6
Q ss_pred HHHHHHHHHhc---CChHHHHHHHHHHhhCCCCCChhHHHHHHHH
Q 035927 40 WTAMIDGYLRV---NRFREALTLFPEMQTSNIRPDEFTIVRILTA 81 (153)
Q Consensus 40 ~~~li~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~ 81 (153)
+-.+|++|.|+ .+.+.|+-.+.+|++.| -|.-+.=..++-+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~A 57 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIG 57 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Confidence 34456666653 67888888888888888 5544433444444
No 349
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=21.28 E-value=1.6e+02 Score=19.78 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHH
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMPER---DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILTAY 82 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~ 82 (153)
-.+.+...+..|+++.+..+++.-... |...++.|. ..+..|+.+-+. .+.+.|..+ |....+.+..+
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~tpL~~A- 113 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALH-QACIDDNVDMVK----FLVENGANINQPDNEGWIPLHAA- 113 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHH-HHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHH-
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH-HHHHcCCHHHHH----HHHHCCCCCCCCCCCCCcHHHHH-
Confidence 345677778889999999999875433 333334443 345667766444 444455443 44455666666
Q ss_pred HHhccCChHHHHHHHHhc
Q 035927 83 MYCKCGDVEKAQRVLRKM 100 (153)
Q Consensus 83 ~~~~~g~~~~a~~~~~~m 100 (153)
++.|+.+-+.-+++.-
T Consensus 114 --~~~g~~~~v~~Ll~~g 129 (299)
T 1s70_B 114 --ASCGYLDIAEYLISQG 129 (299)
T ss_dssp --HHHTCHHHHHHHHHTT
T ss_pred --HHcCCHHHHHHHHhCC
Confidence 7788888777777653
No 350
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=21.21 E-value=1.6e+02 Score=18.30 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-HHHHHHHHHHHHh--------------cC--ChHHHHHHHHHHhhC----
Q 035927 9 WTDIVSGYINRGQVDIARQYFAQMP-ERD-YVLWTAMIDGYLR--------------VN--RFREALTLFPEMQTS---- 66 (153)
Q Consensus 9 ~~~li~~~~~~g~~~~a~~l~~~m~-~~~-~~~~~~li~~~~~--------------~~--~~~~a~~~~~~m~~~---- 66 (153)
++.+.......|-+|....-+..|. ..+ ...+..++..|.. .+ +++.+......++.+
T Consensus 10 ~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~l 89 (149)
T 1yvi_A 10 LTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASV 89 (149)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhHHHHH
Confidence 4556666667776665443444442 223 3444555555532 11 344444444444321
Q ss_pred CCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 67 NIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 67 ~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
|.. .......-|. .+++.|+++.+...+..+.+
T Consensus 90 Ga~-~l~~~c~~lE--~~~~~~~~~~~~~~l~~l~~ 122 (149)
T 1yvi_A 90 GAQ-KVKFTCMQFR--QFCQDKSRDGCLMALAVVRN 122 (149)
T ss_dssp TCH-HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHH--HHHHcCCHHHHHHHHHHHHH
Confidence 111 1111111122 35788888888887777754
No 351
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.04 E-value=95 Score=22.26 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=36.0
Q ss_pred HHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcccC
Q 035927 59 LFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLRK 103 (153)
Q Consensus 59 ~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~~ 103 (153)
+++.+.+.|+.|...++..++.. |.+.=.++.+.++|+.+...
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltl--F~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTL--YSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTT--TTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccchHHHHHHHH--hcccCCHHHHHHHHHHHHHc
Confidence 55667778999999999999887 58888899999999998654
No 352
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=21.03 E-value=94 Score=15.64 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHH
Q 035927 58 TLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVL 97 (153)
Q Consensus 58 ~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~ 97 (153)
+.++.+.+.|+.+....-.+|. ...|+++.|.+.+
T Consensus 14 ~~l~~L~~MGF~~~~~~~~AL~-----~t~gn~e~A~e~L 48 (52)
T 2jy5_A 14 QQLEQLSAMGFLNREANLQALI-----ATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHH-----HHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHH-----HhCCCHHHHHHHH
Confidence 3456677778744443333333 3367888887765
No 353
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=20.77 E-value=1.1e+02 Score=22.46 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 035927 39 LWTAMIDGYLRVNRFREALTLFPEMQT 65 (153)
Q Consensus 39 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 65 (153)
.-.++|.-|...|+.++|..-++++..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~ 40 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA 40 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 457889999999999999999999863
No 354
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=20.75 E-value=1.5e+02 Score=17.96 Aligned_cols=79 Identities=13% Similarity=0.102 Sum_probs=41.4
Q ss_pred HHHHHhcCChHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC---ChhHHHHHHHHHHHh
Q 035927 13 VSGYINRGQVDIARQYFAQMPE----RDYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRP---DEFTIVRILTAYMYC 85 (153)
Q Consensus 13 i~~~~~~g~~~~a~~l~~~m~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~t~~~li~~~~~~ 85 (153)
+...++.|+++....+++.-.. ++..-++.|.. .+..|+.+-+..++ +.|..+ |....+.+..+ +
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A---~ 77 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW-ASAFGEIETVRFLL----EWGADPHILAKERESALSLA---S 77 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH-HHHTTCHHHHHHHH----HHTCCTTCCCTTCCCHHHHH---H
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH-HHHcCCHHHHHHHH----HcCCCchhhcccCCCHHHHH---H
Confidence 3455667888888777776532 23333333333 34556655444433 333322 33334445444 6
Q ss_pred ccCChHHHHHHHHh
Q 035927 86 KCGDVEKAQRVLRK 99 (153)
Q Consensus 86 ~~g~~~~a~~~~~~ 99 (153)
+.|+.+-+..+++.
T Consensus 78 ~~~~~~~v~~Ll~~ 91 (172)
T 3v30_A 78 TGGYTDIVGLLLER 91 (172)
T ss_dssp HTTCHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHc
Confidence 67777666666554
No 355
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=20.65 E-value=1.2e+02 Score=17.71 Aligned_cols=48 Identities=10% Similarity=-0.134 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccC
Q 035927 36 DYVLWTAMIDGYLRVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCG 88 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g 88 (153)
+..-...+.....+.|+.+.|..+++.+.+.. +| .=|..++.+ +-+.|
T Consensus 42 ~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~-~~--gWf~~fl~A--L~~~g 89 (100)
T 2lwd_A 42 INQECEEILQICSTKGMMAGAEKLVECLLRSD-KE--NWPKTLKLA--LEKER 89 (100)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CT--HHHHHHHHH--HHHHT
T ss_pred CHHHHHHHHHHHHccChHHHHHHHHHHHHhcC-cC--CcHHHHHHH--HHHcC
Confidence 44455666666667788888888888777632 22 557777777 35444
No 356
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=20.31 E-value=4e+02 Score=22.63 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=31.4
Q ss_pred hcCChHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhccc
Q 035927 49 RVNRFREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKMLR 102 (153)
Q Consensus 49 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~~ 102 (153)
--|+.+.+..+++.+... ..|-...-.++..+|.|+..|+.....+++..+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc
Confidence 456666666666666543 12333444444455556777777777777777653
No 357
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=20.13 E-value=1.8e+02 Score=18.62 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCChH---HHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---C--CCC-ChhHHHHHHH
Q 035927 10 TDIVSGYINRGQVD---IARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEMQTS---N--IRP-DEFTIVRILT 80 (153)
Q Consensus 10 ~~li~~~~~~g~~~---~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~p-~~~t~~~li~ 80 (153)
+..+.-+.+.|+++ +|-++...|.+.+..----+-.....-.....-..++.+|+.. | ... +..++.-|..
T Consensus 19 s~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~ 98 (158)
T 1naf_A 19 SKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQ 98 (158)
T ss_dssp HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHH
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHH
Confidence 45666777777654 5777777776433221111111111112234446788888753 2 112 5577777777
Q ss_pred HH
Q 035927 81 AY 82 (153)
Q Consensus 81 ~~ 82 (153)
.|
T Consensus 99 ~C 100 (158)
T 1naf_A 99 RC 100 (158)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 358
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=20.07 E-value=2.7e+02 Score=20.55 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhCCCCCChhHHHHHHHHHHHhccCChHHHHHHHHhcc
Q 035927 36 DYVLWTAMIDGYLRVNR--FREALTLFPEMQTSNIRPDEFTIVRILTAYMYCKCGDVEKAQRVLRKML 101 (153)
Q Consensus 36 ~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~t~~~li~~~~~~~~g~~~~a~~~~~~m~ 101 (153)
+..+|-.+|.-+....+ .++|.++++.+.+-.+ + ..-..+++-++ +.|.-..++...+.+.|.
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~G~~-~-~~QiaAfL~Al-r~kGet~eEi~g~~~am~ 86 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMTGNA-R-PAQIAAFAVAM-TMKAPTADEVGELAGVML 86 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHTTCS-C-HHHHHHHHHHH-HHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC-C-HHHHHHHHHHH-HHhCcCHHHHHHHHHHHH
Confidence 45689999999988775 4799999999987644 3 34445555553 677777888777766663
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.00 E-value=3.9e+02 Score=22.36 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 035927 11 DIVSGYINRGQVDIARQYFAQMPERDYVLWTAMIDGYLRVNRFREALTLFPEM 63 (153)
Q Consensus 11 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 63 (153)
.++..|...|..+-|.++....+.....+| .+-.++...|++++|.+.|++.
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHH
Confidence 366677777888888777766654333333 4666677788888888888765
Done!