Query 035928
Match_columns 118
No_of_seqs 116 out of 614
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 07:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02519 Auxin_inducible: Auxi 100.0 5E-33 1.1E-37 197.7 8.1 67 29-98 33-99 (100)
2 PLN03090 auxin-responsive fami 100.0 8.8E-33 1.9E-37 199.3 8.7 69 27-98 35-103 (104)
3 PLN03220 uncharacterized prote 100.0 4.7E-32 1E-36 196.0 8.5 72 26-97 29-102 (105)
4 PLN03219 uncharacterized prote 100.0 1.3E-31 2.8E-36 194.6 8.5 72 26-98 33-105 (108)
5 PRK02899 adaptor protein; Prov 86.9 0.59 1.3E-05 36.7 2.7 24 61-84 39-62 (197)
6 PF02214 BTB_2: BTB/POZ domain 84.6 1.4 3E-05 29.4 3.3 59 38-101 2-63 (94)
7 PRK02315 adaptor protein; Prov 83.5 0.91 2E-05 36.3 2.4 24 61-84 39-62 (233)
8 PF05389 MecA: Negative regula 77.8 0.71 1.5E-05 35.9 0.0 25 60-84 38-62 (220)
9 smart00666 PB1 PB1 domain. Pho 69.9 14 0.0003 23.8 4.7 49 47-100 11-70 (81)
10 cd05992 PB1 The PB1 domain is 62.0 30 0.00066 21.9 5.1 50 47-100 10-70 (81)
11 PF11834 DUF3354: Domain of un 59.4 17 0.00037 24.4 3.7 24 48-77 19-42 (69)
12 PF00651 BTB: BTB/POZ domain; 44.8 74 0.0016 20.6 4.9 57 37-101 13-74 (111)
13 PRK02797 4-alpha-L-fucosyltran 43.2 66 0.0014 27.8 5.5 65 31-98 141-224 (322)
14 cd06398 PB1_Joka2 The PB1 doma 39.6 69 0.0015 22.3 4.3 52 46-97 9-73 (91)
15 cd01406 SIR2-like Sir2-like: P 38.2 73 0.0016 24.5 4.7 36 35-79 1-36 (242)
16 COG4862 MecA Negative regulato 36.8 26 0.00056 28.9 2.0 27 59-85 37-63 (224)
17 PF02209 VHP: Villin headpiece 36.7 13 0.00028 22.3 0.2 18 57-74 1-18 (36)
18 smart00153 VHP Villin headpiec 36.2 17 0.00038 21.6 0.7 18 57-74 1-18 (36)
19 PRK10308 3-methyl-adenine DNA 36.0 1.5E+02 0.0032 24.4 6.3 65 34-101 45-124 (283)
20 cd06407 PB1_NLP A PB1 domain i 34.3 1.1E+02 0.0023 20.9 4.5 47 47-98 10-68 (82)
21 cd06410 PB1_UP2 Uncharacterize 33.3 1E+02 0.0022 21.8 4.3 45 38-89 17-74 (97)
22 PF02100 ODC_AZ: Ornithine dec 32.1 43 0.00092 24.0 2.3 53 47-100 23-79 (108)
23 PF07429 Glyco_transf_56: 4-al 30.0 1.4E+02 0.003 26.2 5.4 47 30-76 179-244 (360)
24 PF13778 DUF4174: Domain of un 29.7 40 0.00086 24.0 1.8 24 33-56 77-100 (118)
25 PF14317 YcxB: YcxB-like prote 28.8 1.1E+02 0.0025 17.7 3.5 32 33-68 28-59 (62)
26 TIGR03687 pupylate_cterm ubiqu 27.8 28 0.0006 20.9 0.6 19 63-81 12-32 (33)
27 cd06080 MUM1_like Mutated mela 27.0 96 0.0021 21.3 3.3 43 33-75 28-74 (80)
28 PF11822 DUF3342: Domain of un 25.0 2.2E+02 0.0048 24.5 5.7 53 46-101 11-68 (317)
29 PF12058 DUF3539: Protein of u 24.6 14 0.0003 26.5 -1.3 13 56-68 4-16 (88)
30 cd06397 PB1_UP1 Uncharacterize 23.5 97 0.0021 21.9 2.8 48 46-98 9-67 (82)
31 KOG4209 Splicing factor RNPS1, 22.9 18 0.0004 29.1 -1.0 45 46-90 94-139 (231)
32 TIGR03793 TOMM_pelo TOMM prope 22.5 1.4E+02 0.0031 20.3 3.4 27 58-84 14-44 (77)
33 PF07369 DUF1488: Protein of u 21.8 2E+02 0.0044 18.7 4.0 20 36-58 18-37 (83)
34 PF08861 DUF1828: Domain of un 20.6 2.7E+02 0.006 18.6 4.9 41 60-100 44-85 (90)
No 1
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=100.00 E-value=5e-33 Score=197.70 Aligned_cols=67 Identities=51% Similarity=1.045 Sum_probs=65.1
Q ss_pred CCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHH
Q 035928 29 MRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 29 ~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i 98 (118)
..++|+||||||||+ +++||+||++|||||+|++||++|||||||+++|+|+|||++++|++++|+|
T Consensus 33 ~~~vp~G~~~VyVG~---~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l 99 (100)
T PF02519_consen 33 ESDVPKGHFAVYVGE---ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL 99 (100)
T ss_pred cCCCCCCeEEEEeCc---cceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence 488999999999997 8999999999999999999999999999999999999999999999999997
No 2
>PLN03090 auxin-responsive family protein; Provisional
Probab=99.98 E-value=8.8e-33 Score=199.34 Aligned_cols=69 Identities=36% Similarity=0.831 Sum_probs=65.8
Q ss_pred CCCCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHH
Q 035928 27 DEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 27 ~~~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i 98 (118)
..+.+||+||||||||+ +++||+||++|||||+|++||++|||||||+++|+|+|||++++|++++|+|
T Consensus 35 ~~~~~vpkG~~aVyVG~---~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 35 GLPLDVPKGHFPVYVGE---NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred cCCCCCCCCcEEEEECC---CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 35678999999999996 7899999999999999999999999999999999999999999999999998
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=99.97 E-value=4.7e-32 Score=196.03 Aligned_cols=72 Identities=38% Similarity=0.799 Sum_probs=65.0
Q ss_pred CCCCCCCCCceEEEEEccCC-CceeEEEEEecccCCHHHHHHHHHhHHhcCcCC-CCCeEEccCHHHHHHHHHH
Q 035928 26 KDEMRNIPKGCLAILVGQEG-EEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ-KGPITLPCHVEEFRTVQGM 97 (118)
Q Consensus 26 k~~~~~vpkG~~aVYVG~~g-ee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~-~G~L~IPCd~~~Fe~vl~~ 97 (118)
.+.+.+|||||||||||+++ .+++|||||++|||||+|++||++|||||||++ +|+|+|||+++.|++++.-
T Consensus 29 ~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s 102 (105)
T PLN03220 29 SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS 102 (105)
T ss_pred ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence 34567899999999999743 358999999999999999999999999999998 6999999999999999864
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=194.57 Aligned_cols=72 Identities=40% Similarity=0.780 Sum_probs=65.5
Q ss_pred CCCCCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCC-CCCeEEccCHHHHHHHHHHH
Q 035928 26 KDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ-KGPITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 26 k~~~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~-~G~L~IPCd~~~Fe~vl~~i 98 (118)
...+..|||||||||||+ +++++||+||++|||||+|++||++|||||||.+ +|+|+|||+++.|++|++.-
T Consensus 33 ~~~~~~vpkGh~aVYVG~-~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~ 105 (108)
T PLN03219 33 TTTSGLVPKGHVAVYVGE-QMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH 105 (108)
T ss_pred CCCCCCCCCCeEEEEECC-CCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence 345578999999999997 3468999999999999999999999999999997 69999999999999999763
No 5
>PRK02899 adaptor protein; Provisional
Probab=86.87 E-value=0.59 Score=36.67 Aligned_cols=24 Identities=42% Similarity=0.916 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHhcCcCCCCCeEE
Q 035928 61 PLFMQLLKEAEEEYGFDQKGPITL 84 (118)
Q Consensus 61 P~F~~LL~~AEEEfGf~~~G~L~I 84 (118)
-+|.++|++|..|+||.-+|||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccCCeEEE
Confidence 467777999999999999999876
No 6
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=84.61 E-value=1.4 Score=29.35 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=44.7
Q ss_pred EEEEccCCCceeEEEEEecccC-C--HHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHHhcc
Q 035928 38 AILVGQEGEEQQKFVIPVIYIN-H--PLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKD 101 (118)
Q Consensus 38 aVYVG~~gee~kRFvVPv~yLn-h--P~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i~~~ 101 (118)
.+-||. ++|.++.+.|. . ..|..|++.......-..+|.+-|-++...|++|+..+...
T Consensus 2 ~lNVGG-----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~ 63 (94)
T PF02214_consen 2 RLNVGG-----TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG 63 (94)
T ss_dssp EEEETT-----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred EEEECC-----EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence 456774 89999999887 4 47888888652222223479999999999999999999874
No 7
>PRK02315 adaptor protein; Provisional
Probab=83.49 E-value=0.91 Score=36.30 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHhcCcCCCCCeEE
Q 035928 61 PLFMQLLKEAEEEYGFDQKGPITL 84 (118)
Q Consensus 61 P~F~~LL~~AEEEfGf~~~G~L~I 84 (118)
-+|.++|++|..|+||..+|||+|
T Consensus 39 ~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 39 EFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHhccccCcccCCeEEE
Confidence 579999999999999999999976
No 8
>PF05389 MecA: Negative regulator of genetic competence (MecA); InterPro: IPR008681 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family contains several bacterial MecA proteins. In complex media competence development is poor, and there is little or no expression of late competence genes. Overexpression of MecA inhibits comG transcription [, , ]. MecA enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis. Acts negatively in the development of competence by binding ComK and recruiting it to the ClpCP protease. When overexpressed, inhibits sporulation. Also involved in Spx degradation by ClpC. ; PDB: 3JTP_C 2Y1R_O 3PXI_c 3PXG_b 3JTO_D 3JTN_A.
Probab=77.84 E-value=0.71 Score=35.94 Aligned_cols=25 Identities=44% Similarity=0.927 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhHHhcCcCCCCCeEE
Q 035928 60 HPLFMQLLKEAEEEYGFDQKGPITL 84 (118)
Q Consensus 60 hP~F~~LL~~AEEEfGf~~~G~L~I 84 (118)
+-.|.++|++|.+|+||..+|||+|
T Consensus 38 e~fF~~ileea~~e~~F~~~~~l~~ 62 (220)
T PF05389_consen 38 EEFFYSILEEADEEHGFENDGPLTF 62 (220)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 4579999999999999999999876
No 9
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=69.89 E-value=14 Score=23.77 Aligned_cols=49 Identities=18% Similarity=0.413 Sum_probs=38.0
Q ss_pred ceeEEEEEecccCCHHHHHHHHHhHHhcCcC----------CCC-CeEEccCHHHHHHHHHHHhc
Q 035928 47 EQQKFVIPVIYINHPLFMQLLKEAEEEYGFD----------QKG-PITLPCHVEEFRTVQGMIDK 100 (118)
Q Consensus 47 e~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~----------~~G-~L~IPCd~~~Fe~vl~~i~~ 100 (118)
+.+||.||- ...|.+|..+..+.|+.. .+| .++|.++. .++.++.+...
T Consensus 11 ~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~ 70 (81)
T smart00666 11 ETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDS 70 (81)
T ss_pred EEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHH
Confidence 789999986 778999999999999874 244 68888865 67777777653
No 10
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=61.98 E-value=30 Score=21.92 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=38.1
Q ss_pred ceeEEEEEecccCCHHHHHHHHHhHHhcCcC----------CCCC-eEEccCHHHHHHHHHHHhc
Q 035928 47 EQQKFVIPVIYINHPLFMQLLKEAEEEYGFD----------QKGP-ITLPCHVEEFRTVQGMIDK 100 (118)
Q Consensus 47 e~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~----------~~G~-L~IPCd~~~Fe~vl~~i~~ 100 (118)
+.+||.+|. ..+.|.+|..+..+.|++. .+|- ++|.++ +.|+.++.+...
T Consensus 10 ~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 10 EIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred CCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 689999998 8889999999999999885 1443 555554 677888777653
No 11
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=59.42 E-value=17 Score=24.44 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=19.2
Q ss_pred eeEEEEEecccCCHHHHHHHHHhHHhcCcC
Q 035928 48 QQKFVIPVIYINHPLFMQLLKEAEEEYGFD 77 (118)
Q Consensus 48 ~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~ 77 (118)
.+=..+| -.+++||+.|++.||+.
T Consensus 19 GKvi~lP------~SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 19 GKVIWLP------DSLEELLKIASEKFGFS 42 (69)
T ss_pred CEEEEcC------ccHHHHHHHHHHHhCCC
Confidence 4555566 47999999999999985
No 12
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=44.83 E-value=74 Score=20.57 Aligned_cols=57 Identities=23% Similarity=0.439 Sum_probs=39.6
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCC--CeEEc-cCHHHHHHHHHHHhcc
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKG--PITLP-CHVEEFRTVQGMIDKD 101 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G--~L~IP-Cd~~~Fe~vl~~i~~~ 101 (118)
+.+.|| +.++|-+.-..| ..|.|+.|++.. +....+ .+.++ |+...|+.++..+...
T Consensus 13 ~~i~v~----d~~~~~vhk~iL~~~S~~F~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~ 74 (111)
T PF00651_consen 13 VTIRVG----DGKTFYVHKNILAARSPYFRNLFEGS----KFKESTVPEISLPDVSPEAFEAFLEYMYTG 74 (111)
T ss_dssp EEEEET----TTEEEEE-HHHHHHHBHHHHHHHTTT----TSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred EEEEEC----CCEEEeechhhhhccchhhhhccccc----ccccccccccccccccccccccccccccCC
Confidence 345555 257888887776 679999999988 212233 35555 8899999999998654
No 13
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=43.15 E-value=66 Score=27.75 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=40.2
Q ss_pred CCCCceEEEEEccCC-----------------CceeEEEEEecc--cCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHH
Q 035928 31 NIPKGCLAILVGQEG-----------------EEQQKFVIPVIY--INHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEF 91 (118)
Q Consensus 31 ~vpkG~~aVYVG~~g-----------------ee~kRFvVPv~y--LnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~F 91 (118)
..+++-+.+.||..+ ++.-|+.||.+| =|.--.++..+.+.+-||-+. +.|-=+--.|
T Consensus 141 ~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~---~~~L~e~l~f 217 (322)
T PRK02797 141 RQRAGKMTILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAEN---FQILTEKLPF 217 (322)
T ss_pred ccCCCceEEEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCccc---EEehhhhCCH
Confidence 456778999999532 234599999999 565566666666777787332 3333333334
Q ss_pred HHHHHHH
Q 035928 92 RTVQGMI 98 (118)
Q Consensus 92 e~vl~~i 98 (118)
+.=+.+|
T Consensus 218 ~eYl~lL 224 (322)
T PRK02797 218 DDYLALL 224 (322)
T ss_pred HHHHHHH
Confidence 4444443
No 14
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=39.57 E-value=69 Score=22.29 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=36.3
Q ss_pred CceeEEEEEecc-cCCHHHHHHHHHhHHhcCcCC-----------CC-CeEEccCHHHHHHHHHH
Q 035928 46 EEQQKFVIPVIY-INHPLFMQLLKEAEEEYGFDQ-----------KG-PITLPCHVEEFRTVQGM 97 (118)
Q Consensus 46 ee~kRFvVPv~y-LnhP~F~~LL~~AEEEfGf~~-----------~G-~L~IPCd~~~Fe~vl~~ 97 (118)
++.+||-+|.+= -....|..|.++-++-|.... +| -++|.|+.+.-+-+-.+
T Consensus 9 ~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 9 GTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred CEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHH
Confidence 479999999741 114478889988888887653 23 48889998766555443
No 15
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=38.23 E-value=73 Score=24.52 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=28.0
Q ss_pred ceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCC
Q 035928 35 GCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQK 79 (118)
Q Consensus 35 G~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~ 79 (118)
|.+++.||. |-+.. .+-|...+|++...++++.+.+
T Consensus 1 g~lvlFiGA-G~S~~--------~glP~W~~Ll~~l~~~~~~~~~ 36 (242)
T cd01406 1 GRVVIFVGA-GVSVS--------SGLPDWKTLLDEIASELGLEID 36 (242)
T ss_pred CCEEEEecC-ccccc--------cCCCChHHHHHHHHHHcCCccc
Confidence 678999997 32222 5789999999999999987654
No 16
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=36.85 E-value=26 Score=28.86 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhHHhcCcCCCCCeEEc
Q 035928 59 NHPLFMQLLKEAEEEYGFDQKGPITLP 85 (118)
Q Consensus 59 nhP~F~~LL~~AEEEfGf~~~G~L~IP 85 (118)
.+-+|-++++++.+|-+|.-+|||+|-
T Consensus 37 ~EE~F~~mMdEl~~ee~F~~~GpL~iq 63 (224)
T COG4862 37 TEELFYEMMDELNLEEDFKDEGPLWIQ 63 (224)
T ss_pred HHHHHHHHHHhcCCccccccCCceEEE
Confidence 356899999999999999999999984
No 17
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=36.68 E-value=13 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=14.5
Q ss_pred ccCCHHHHHHHHHhHHhc
Q 035928 57 YINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 57 yLnhP~F~~LL~~AEEEf 74 (118)
||+.-.|++++.++.+||
T Consensus 1 YLsd~dF~~vFgm~~~eF 18 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEF 18 (36)
T ss_dssp GS-HHHHHHHHSS-HHHH
T ss_pred CcCHHHHHHHHCCCHHHH
Confidence 788899999999999988
No 18
>smart00153 VHP Villin headpiece domain.
Probab=36.24 E-value=17 Score=21.62 Aligned_cols=18 Identities=22% Similarity=0.521 Sum_probs=16.1
Q ss_pred ccCCHHHHHHHHHhHHhc
Q 035928 57 YINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 57 yLnhP~F~~LL~~AEEEf 74 (118)
||+.-.|+.++.++.+||
T Consensus 1 yLsdeeF~~vfgmsr~eF 18 (36)
T smart00153 1 YLSDEDFEEVFGMTREEF 18 (36)
T ss_pred CCCHHHHHHHHCCCHHHH
Confidence 788889999999999987
No 19
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional
Probab=36.04 E-value=1.5e+02 Score=24.37 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=43.2
Q ss_pred CceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCC---------------CCeEEccCHHHHHHHHHHH
Q 035928 34 KGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQK---------------GPITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 34 kG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~---------------G~L~IPCd~~~Fe~vl~~i 98 (118)
.|.|.|.-.. ...++.|-++.-.-|....++.+...-|+.+.| -+|+||...+.||-+++.|
T Consensus 45 ~~~~~v~~~~---~~~~l~~~~~~~~~~~~~~~~~~vrr~fdLd~d~~~i~~~L~~~~~~~~GlR~p~~~d~fE~lv~aI 121 (283)
T PRK10308 45 RGVVTVIPDI---ARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGKLGAARPGLRLPGSVDAFEQGVRAI 121 (283)
T ss_pred cEEEEEEEcC---CCceEEEEEcCCccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence 4666666543 334455555543334555677777777777654 3599999999999999988
Q ss_pred hcc
Q 035928 99 DKD 101 (118)
Q Consensus 99 ~~~ 101 (118)
...
T Consensus 122 igQ 124 (283)
T PRK10308 122 LGQ 124 (283)
T ss_pred HHh
Confidence 644
No 20
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=34.35 E-value=1.1e+02 Score=20.86 Aligned_cols=47 Identities=19% Similarity=0.409 Sum_probs=33.1
Q ss_pred ceeEEEEEecccCCHHHHHHHHHhHHhcCcCC------------CCCeEEccCHHHHHHHHHHH
Q 035928 47 EQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ------------KGPITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 47 e~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~------------~G~L~IPCd~~~Fe~vl~~i 98 (118)
+..||.+|.+- .|++|.++-.+-|+... ...++|.|+.++ +..+...
T Consensus 10 d~~r~~l~~~~----~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL-~eai~i~ 68 (82)
T cd06407 10 EKIRFRLPPSW----GFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADL-EECIDVY 68 (82)
T ss_pred eEEEEEcCCCC----CHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHH-HHHHHHH
Confidence 78999888643 69999999888887653 235788888764 4444443
No 21
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=33.29 E-value=1e+02 Score=21.78 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=32.8
Q ss_pred EEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCC-------------CCCeEEccCHH
Q 035928 38 AILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ-------------KGPITLPCHVE 89 (118)
Q Consensus 38 aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~-------------~G~L~IPCd~~ 89 (118)
.=|||. +.+-..|+-+ -.|.+|..+..+.++... ++-+.|.||.+
T Consensus 17 l~Y~GG---~tr~i~V~r~----~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeD 74 (97)
T cd06410 17 LRYVGG---ETRIVSVDRS----ISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDED 74 (97)
T ss_pred EEEcCC---ceEEEEEcCC----CCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHH
Confidence 369985 6777778776 477888888888876664 45677888863
No 22
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=32.07 E-value=43 Score=23.98 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=28.8
Q ss_pred ceeEEE-EEec---ccCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHHhc
Q 035928 47 EQQKFV-IPVI---YINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDK 100 (118)
Q Consensus 47 e~kRFv-VPv~---yLnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i~~ 100 (118)
++.=|| +|-. -.+-..|.+||+.|||.++.++ -.|.|+=+......++.-+..
T Consensus 23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~-vvic~~k~~~d~~~Llr~l~~ 79 (108)
T PF02100_consen 23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH-VVICLDKNRPDRASLLRTLMW 79 (108)
T ss_dssp TTEEEEE-SS---SS--SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHHTT
T ss_pred CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE-EEEEEECCchhHHHhhhhcEe
Confidence 345555 4543 3456789999999999998765 567777666666666665543
No 23
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=30.01 E-value=1.4e+02 Score=26.24 Aligned_cols=47 Identities=30% Similarity=0.511 Sum_probs=35.7
Q ss_pred CCCCCceEEEEEccC-----------------CCceeEEEEEeccc--CCHHHHHHHHHhHHhcCc
Q 035928 30 RNIPKGCLAILVGQE-----------------GEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGF 76 (118)
Q Consensus 30 ~~vpkG~~aVYVG~~-----------------gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf 76 (118)
...+++-..|.||.. -.+..|++||++|= |.--.+++.+.+++-||-
T Consensus 179 ~~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~ 244 (360)
T PF07429_consen 179 NKKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSYGANNQAYIQQVIQAGKELFGA 244 (360)
T ss_pred ccCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCc
Confidence 345678999999952 13568999999996 456788888888888873
No 24
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=29.74 E-value=40 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.620 Sum_probs=19.4
Q ss_pred CCceEEEEEccCCCceeEEEEEec
Q 035928 33 PKGCLAILVGQEGEEQQKFVIPVI 56 (118)
Q Consensus 33 pkG~~aVYVG~~gee~kRFvVPv~ 56 (118)
+.|+-.|.||++|....|+--|++
T Consensus 77 ~~~f~~vLiGKDG~vK~r~~~p~~ 100 (118)
T PF13778_consen 77 PGGFTVVLIGKDGGVKLRWPEPID 100 (118)
T ss_pred CCceEEEEEeCCCcEEEecCCCCC
Confidence 667778888998888899877764
No 25
>PF14317 YcxB: YcxB-like protein
Probab=28.77 E-value=1.1e+02 Score=17.71 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCCceeEEEEEecccCCHHHHHHHH
Q 035928 33 PKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLK 68 (118)
Q Consensus 33 pkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~ 68 (118)
-+.++-+|++. ..-++||.+.++.-...++.+
T Consensus 28 ~~~~~~l~~~~----~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 28 TKDYFYLYLGK----NQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred eCCEEEEEECC----CeEEEEEHHHCCHhHHHHHHH
Confidence 35678888874 699999999998555555443
No 26
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=27.78 E-value=28 Score=20.88 Aligned_cols=19 Identities=42% Similarity=0.663 Sum_probs=14.5
Q ss_pred HHHHHHHhHHhc--CcCCCCC
Q 035928 63 FMQLLKEAEEEY--GFDQKGP 81 (118)
Q Consensus 63 F~~LL~~AEEEf--Gf~~~G~ 81 (118)
+..+|+.-+|+| ||-|+|+
T Consensus 12 Id~vLe~NAe~FV~~fVQKGG 32 (33)
T TIGR03687 12 IDGVLESNAEEFVRGFVQKGG 32 (33)
T ss_pred HHHHHHHhHHHHHHHHHHccC
Confidence 557788888888 8888774
No 27
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=27.01 E-value=96 Score=21.34 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCceEEEEEccC-CCceeEEEEEecccCCHHH---HHHHHHhHHhcC
Q 035928 33 PKGCLAILVGQE-GEEQQKFVIPVIYINHPLF---MQLLKEAEEEYG 75 (118)
Q Consensus 33 pkG~~aVYVG~~-gee~kRFvVPv~yLnhP~F---~~LL~~AEEEfG 75 (118)
++-+.+.+.|.. .-...++-+...|+.++.+ +.|+++|.|.|.
T Consensus 28 ~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~~~~ek~~~~~k~ke~~~ 74 (80)
T cd06080 28 KQKARVNFIGDNMQSEKKGIRVVKRWLKHFDCTEKQKLTNKAKESYE 74 (80)
T ss_pred CCEEEEEEeCCCCceeccchhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 566778888974 3445788888999999999 489999999885
No 28
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=25.03 E-value=2.2e+02 Score=24.48 Aligned_cols=53 Identities=17% Similarity=0.368 Sum_probs=40.9
Q ss_pred CceeEEEEEecccC--CHHHHHHHHH---hHHhcCcCCCCCeEEccCHHHHHHHHHHHhcc
Q 035928 46 EEQQKFVIPVIYIN--HPLFMQLLKE---AEEEYGFDQKGPITLPCHVEEFRTVQGMIDKD 101 (118)
Q Consensus 46 ee~kRFvVPv~yLn--hP~F~~LL~~---AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i~~~ 101 (118)
...+=|..|.+.|- ..-|+++|.. +.++. .+=.|.+-||+..|+.++.-+...
T Consensus 11 ~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~---~~idisVhCDv~iF~WLm~yv~~~ 68 (317)
T PF11822_consen 11 NEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRW---EEIDISVHCDVHIFEWLMRYVKGE 68 (317)
T ss_pred CcceeeeccHHHHHHhhHHHHHHHhhcccccCcC---CCcceEEecChhHHHHHHHHhhcC
Confidence 45677999999885 5679999976 44433 245689999999999999998773
No 29
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=24.63 E-value=14 Score=26.49 Aligned_cols=13 Identities=46% Similarity=0.889 Sum_probs=9.1
Q ss_pred cccCCHHHHHHHH
Q 035928 56 IYINHPLFMQLLK 68 (118)
Q Consensus 56 ~yLnhP~F~~LL~ 68 (118)
.|||||.|..|-.
T Consensus 4 ~YLNHPtFGlLy~ 16 (88)
T PF12058_consen 4 TYLNHPTFGLLYR 16 (88)
T ss_dssp -EEEETTTEEEEE
T ss_pred ccccCCccchhee
Confidence 5899999866543
No 30
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=23.52 E-value=97 Score=21.92 Aligned_cols=48 Identities=21% Similarity=0.369 Sum_probs=34.8
Q ss_pred CceeEEEEEecccCCHHHHHHHHHhHHhcCcC----------CCC-CeEEccCHHHHHHHHHHH
Q 035928 46 EEQQKFVIPVIYINHPLFMQLLKEAEEEYGFD----------QKG-PITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 46 ee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~----------~~G-~L~IPCd~~~Fe~vl~~i 98 (118)
.+.+||+.|. -|.+.+|-++-+.-|-+. .+| .|||.=+. .++.+....
T Consensus 9 g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~-eL~d~~~~~ 67 (82)
T cd06397 9 GDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNK-ELQDFYRLS 67 (82)
T ss_pred CceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchH-HHHHHHHhc
Confidence 4789999998 899999999999888766 243 46776554 455555543
No 31
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=22.92 E-value=18 Score=29.06 Aligned_cols=45 Identities=18% Similarity=0.296 Sum_probs=35.8
Q ss_pred CceeEEEEEecccCCHHHHHHHHHhHHhc-CcCCCCCeEEccCHHH
Q 035928 46 EEQQKFVIPVIYINHPLFMQLLKEAEEEY-GFDQKGPITLPCHVEE 90 (118)
Q Consensus 46 ee~kRFvVPv~yLnhP~F~~LL~~AEEEf-Gf~~~G~L~IPCd~~~ 90 (118)
+.++....|..|++..-|..++.+-+++| ++.+-..++|||+-..
T Consensus 94 ~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~ 139 (231)
T KOG4209|consen 94 ERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR 139 (231)
T ss_pred hhhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccC
Confidence 34677888999999999999999988887 5555556799998543
No 32
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=22.53 E-value=1.4e+02 Score=20.29 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=18.4
Q ss_pred cCCHHHHHHH----HHhHHhcCcCCCCCeEE
Q 035928 58 INHPLFMQLL----KEAEEEYGFDQKGPITL 84 (118)
Q Consensus 58 LnhP~F~~LL----~~AEEEfGf~~~G~L~I 84 (118)
-..|.|++.| +.+-+||||.....+.|
T Consensus 14 w~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i 44 (77)
T TIGR03793 14 WEDEAFKQALLTNPKEALEREGVQVPAEVEV 44 (77)
T ss_pred HcCHHHHHHHHHCHHHHHHHhCCCCCCceEE
Confidence 4678999966 44557889987655444
No 33
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=21.78 E-value=2e+02 Score=18.72 Aligned_cols=20 Identities=15% Similarity=0.059 Sum_probs=16.7
Q ss_pred eEEEEEccCCCceeEEEEEeccc
Q 035928 36 CLAILVGQEGEEQQKFVIPVIYI 58 (118)
Q Consensus 36 ~~aVYVG~~gee~kRFvVPv~yL 58 (118)
.|+++|+. ..-++.|...-|
T Consensus 18 ~F~a~~~g---~~i~C~Is~~aL 37 (83)
T PF07369_consen 18 RFPAQVDG---MQIRCAISAEAL 37 (83)
T ss_dssp EEEEEETT---EEEEEEEEHHHH
T ss_pred EEEEEECC---EEEEEEEeHHHH
Confidence 58888874 789999999877
No 34
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=20.62 E-value=2.7e+02 Score=18.58 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=34.5
Q ss_pred CHHHHHHHHHhHHhcCcCC-CCCeEEccCHHHHHHHHHHHhc
Q 035928 60 HPLFMQLLKEAEEEYGFDQ-KGPITLPCHVEEFRTVQGMIDK 100 (118)
Q Consensus 60 hP~F~~LL~~AEEEfGf~~-~G~L~IPCd~~~Fe~vl~~i~~ 100 (118)
.|.=+++|+..-..||++- +|.|.+.++.+.|-..+..+..
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~liq 85 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRLIQ 85 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHHHH
Confidence 6778899999999999986 6899999999988877766543
Done!