Query 035928
Match_columns 118
No_of_seqs 116 out of 614
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:57:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkp_A BTB/POZ domain-containi 73.2 9.8 0.00033 24.1 5.6 63 37-104 11-76 (109)
2 2vpk_A Myoneurin; transcriptio 63.3 17 0.00057 23.5 5.2 56 37-104 25-85 (116)
3 1r29_A B-cell lymphoma 6 prote 56.8 19 0.00063 23.6 4.6 59 37-104 32-94 (127)
4 3ga1_A Nucleus accumbens-assoc 52.5 28 0.00096 22.9 5.0 54 37-102 36-93 (129)
5 1und_A Advillin, P92; actin bi 47.7 4.4 0.00015 23.6 0.3 19 56-74 1-19 (37)
6 2if5_A Zinc finger and BTB dom 47.5 48 0.0017 21.2 5.4 60 37-104 28-90 (120)
7 3drz_A BTB/POZ domain-containi 47.1 59 0.002 21.5 7.0 64 34-103 5-73 (107)
8 3b84_A Zinc finger and BTB dom 43.8 64 0.0022 20.9 5.7 56 37-104 27-85 (119)
9 1y74_B MLIN-2/CASK, peripheral 42.8 10 0.00035 22.4 1.4 20 56-75 26-49 (50)
10 1s1g_A Potassium voltage-gated 40.5 27 0.00093 24.3 3.5 64 33-103 11-76 (124)
11 3n5b_B ASR0485 protein; PII, P 39.0 3.9 0.00013 29.4 -1.1 13 56-68 28-40 (112)
12 3ohu_A Transcription regulator 38.3 33 0.0011 22.3 3.5 55 37-101 35-93 (125)
13 2fb0_A Conserved hypothetical 37.6 66 0.0023 19.6 4.7 42 31-72 33-83 (94)
14 1vd2_A Protein kinase C, IOTA 37.5 43 0.0015 22.5 4.0 45 35-84 5-49 (89)
15 2lmc_A Bacterial RNA polymeras 37.5 25 0.00085 24.0 2.8 13 63-75 56-68 (84)
16 2fep_A Catabolite control prot 36.0 39 0.0013 24.4 3.9 42 18-77 4-48 (289)
17 2q81_A MIZ-1 protein; BTB/POZ 34.1 76 0.0026 20.5 4.8 55 37-104 30-87 (119)
18 3htm_A Speckle-type POZ protei 32.7 80 0.0027 21.2 4.8 59 37-103 37-98 (172)
19 2gff_A LSRG protein; dimeric a 31.6 70 0.0024 20.2 4.2 42 32-73 31-81 (106)
20 2ppi_A Gigaxonin; BTB domain, 31.0 1.2E+02 0.0039 20.5 5.5 61 37-103 50-113 (144)
21 1buo_A POZ domain, protein (pr 30.7 86 0.0029 20.2 4.6 55 37-104 31-88 (121)
22 2c2n_A Malonyl COA-acyl carrie 29.9 14 0.00049 29.0 0.7 22 56-77 44-65 (339)
23 2qdl_A Chemotaxis signal trans 27.4 69 0.0024 22.4 3.9 23 32-59 10-32 (165)
24 4dn9_A Antibiotic biosynthesis 26.7 1.1E+02 0.0039 20.4 4.8 43 31-73 49-100 (122)
25 3fkc_A Transcriptional regulat 26.1 93 0.0032 20.1 4.1 54 37-103 34-90 (116)
26 2al3_A TUG long isoform; TUG U 26.1 61 0.0021 22.0 3.2 30 47-78 18-47 (90)
27 2yy9_A Zinc finger and BTB dom 26.1 84 0.0029 20.9 4.0 56 37-104 28-86 (135)
28 1yu8_X Villin; alpha helix, 3- 26.0 16 0.00055 23.7 0.3 19 56-74 31-49 (67)
29 2xko_C PIPX, global nitrogen r 25.2 8.7 0.0003 26.6 -1.2 13 56-68 5-17 (89)
30 2ihc_A Transcription regulator 25.2 79 0.0027 20.5 3.7 55 37-101 32-90 (124)
31 2nz0_B Potassium voltage-gated 24.5 49 0.0017 23.5 2.6 64 33-103 33-98 (140)
32 3kkf_A Putative antibiotic bio 24.5 1.2E+02 0.004 19.2 4.3 41 32-72 36-85 (105)
33 4eoz_A Speckle-type POZ protei 24.4 90 0.0031 20.3 3.8 60 37-104 28-90 (145)
34 1zav_U 50S ribosomal protein L 24.2 45 0.0015 18.4 1.9 13 63-75 18-30 (30)
35 1x7v_A PA3566 protein, APC5058 23.7 80 0.0027 19.3 3.3 40 32-71 36-84 (99)
36 1ujs_A Actin-binding LIM prote 23.6 22 0.00077 24.2 0.6 19 56-74 46-64 (88)
37 4dpo_A Conserved protein; stru 23.6 1.5E+02 0.005 19.6 4.8 43 32-74 55-106 (119)
38 2qt1_A Nicotinamide riboside k 23.1 55 0.0019 22.7 2.6 24 20-43 6-29 (207)
39 1qzp_A Dematin; villin headpie 22.9 15 0.0005 23.8 -0.4 19 56-74 32-50 (68)
40 2omo_A DUF176; structural geno 22.5 1.2E+02 0.0041 20.1 4.2 42 32-73 53-103 (124)
41 2h1y_A Malonyl coenzyme A-acyl 22.5 15 0.0005 29.0 -0.6 20 58-77 35-54 (321)
42 1q8b_A Protein YJCS; structura 22.3 84 0.0029 20.0 3.3 42 31-72 43-93 (105)
43 3bm7_A Protein of unknown func 21.8 1E+02 0.0035 20.0 3.7 41 32-72 51-100 (115)
44 2z8h_A Transcription regulator 21.7 1.1E+02 0.0037 20.3 3.8 58 37-104 39-100 (138)
45 1yqb_A Ubiquilin 3; structural 21.6 1.7E+02 0.0058 18.8 5.2 54 20-78 6-59 (100)
46 2k6m_S Supervillin; SVHP, HP, 20.8 18 0.00063 23.3 -0.3 19 56-74 31-49 (67)
No 1
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=73.21 E-value=9.8 Score=24.12 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=44.0
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. +++.++|-+.-..| ..|.|++++...-.|- . ..|.|| .+.+.|+.++..+......
T Consensus 11 v~l~v~~-~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~~ 76 (109)
T 2vkp_A 11 VHFVVGP-PGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEID 76 (109)
T ss_dssp EEEEESS-TTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCCC
T ss_pred EEEEECC-CCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCcc
Confidence 4566764 23468888888887 6999999997543332 2 678887 6899999999999876543
No 2
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=63.27 E-value=17 Score=23.47 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=42.3
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc---cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP---CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP---Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++... .+..+.|+ .+...|+.++..+......
T Consensus 25 v~l~v~~-----~~~~aHk~vLaa~S~yF~~~f~~~-------~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~ 85 (116)
T 2vpk_A 25 CTIVIGE-----FQFKAHRNVLASFSEYFGAIYRST-------SENNVFLDQSQVKADGFQKLLEFIYTGTLN 85 (116)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTTC-------CCSCEECCTTTCCHHHHHHHHHHHHHSCCC
T ss_pred EEEEECC-----EEEeccHHHHhhcCHHHHHHHcCC-------CCCeEEeecCCCCHHHHHHHHHHHcCCCcc
Confidence 4456653 5777777776 689999998764 35678888 7999999999999876543
No 3
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=56.77 E-value=19 Score=23.63 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=44.1
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEE-c-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITL-P-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~I-P-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++|+...-.| ....|.| + .+.+.|+.++..|......
T Consensus 32 v~l~v~~-----~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~ 94 (127)
T 1r29_A 32 VVIVVSR-----EQFRAHKTVLMACSGLFYSIFTDQLKR----NLSVINLDPEINPEGFNILLDFMYTSRLN 94 (127)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTSTTTT----TCSEEECCTTSCHHHHHHHHHHHHHSCCC
T ss_pred EEEEECC-----EEEehHHHHHHHhCHHHHHHhcCCccC----CCCEEEeCCCCCHHHHHHHHHHHcCCCcC
Confidence 4556653 5777777777 789999999865444 4578999 4 7889999999999876543
No 4
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=52.55 E-value=28 Score=22.93 Aligned_cols=54 Identities=15% Similarity=0.356 Sum_probs=40.9
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc--cCHHHHHHHHHHHhccC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP--CHVEEFRTVQGMIDKDR 102 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP--Cd~~~Fe~vl~~i~~~~ 102 (118)
+.+.||. ++|-+.-..| ..|.|++++... ....|.|| .+.+.|+.++..|....
T Consensus 36 v~l~v~~-----~~~~~Hk~vLaa~S~~F~~~f~~~-------~~~~i~l~~~~~~~~f~~ll~~iYtg~ 93 (129)
T 3ga1_A 36 VSVVVKG-----HAFKAHRAVLAASSSYFRDLFNNS-------RSAVVELPAAVQPQSFQQILSFCYTGR 93 (129)
T ss_dssp EEEEETT-----EEEEECHHHHHHHBHHHHHHHHHC-------CCSEEECCTTCCHHHHHHHHHHHHHSE
T ss_pred eEEEECC-----EEEEehHHHHHHcCHHHHHHHcCC-------CCCEEEECCCCCHHHHHHHHHHHhCCc
Confidence 4566653 5676665555 479999999876 45789996 89999999999987653
No 5
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=47.74 E-value=4.4 Score=23.57 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=16.9
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 6
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=47.50 E-value=48 Score=21.24 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=41.5
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++...-.| .....|.|+ .+.+.|+.++..+......
T Consensus 28 v~l~v~~-----~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~ 90 (120)
T 2if5_A 28 VVILVEG-----REFPTHRSVLAACSQYFKKLFTSGAVV---DQQNVYEIDFVSAEALTALMDFAYTATLT 90 (120)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHHC--------CCSEEECCSSCHHHHHHHHHHHHHSCCC
T ss_pred eEEEECC-----EEEeHHHHHHHHhCHHHHHHhcCCccc---cCCceEEeCCCCHHHHHHHHHHHcCCCCc
Confidence 4456653 6777776776 589999999754333 234678888 6899999999999876543
No 7
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=47.09 E-value=59 Score=21.46 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=46.3
Q ss_pred CceEEEEEccCCCceeEEEEEecccC-CH--HHHHHHHHhHHhcC--cCCCCCeEEccCHHHHHHHHHHHhccCC
Q 035928 34 KGCLAILVGQEGEEQQKFVIPVIYIN-HP--LFMQLLKEAEEEYG--FDQKGPITLPCHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 34 kG~~aVYVG~~gee~kRFvVPv~yLn-hP--~F~~LL~~AEEEfG--f~~~G~L~IPCd~~~Fe~vl~~i~~~~~ 103 (118)
...+.+.||. +||.+..+-|. .| +|..|.... .++. ...+|.+-|-.+...|++||..+.....
T Consensus 5 ~~~v~LNVGG-----~~f~t~~~TL~~~p~s~L~~~~~~~-~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr~g~l 73 (107)
T 3drz_A 5 SKWVRLNVGG-----TYFLTTRQTLCRDPKSFLYRLCQAD-PDLDSDKDETGAYLIDRDPTYFGPVLNYLRHGKL 73 (107)
T ss_dssp CCEEEEEETT-----EEEEEEHHHHTSSTTSHHHHHHTTC-GGGGGGBCTTSCEEECSCHHHHHHHHHHHHHSCC
T ss_pred CCEEEEEECC-----EEEEECHHHHhcCCCcchhHHHhcC-CCCCcCCCCCceEEecCChHHHHHHHHHhCCCee
Confidence 3568889984 89999987775 34 566664321 1232 3357899999999999999999886543
No 8
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=43.75 E-value=64 Score=20.87 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=41.0
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++.... +..|.|| .+...|+.++..|......
T Consensus 27 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~~~-------~~~i~l~~~~~~~f~~ll~~iYtg~~~ 85 (119)
T 3b84_A 27 ATLDVGG-----LVFKAHWSVLACCSHFFQSLYGDGS-------GGSVVLPAGFAEIFGLLLDFFYTGHLA 85 (119)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTTTT-------CCCEEECGGGHHHHHHHHHHHHHSCCC
T ss_pred eEEEECC-----EEEEeeHHHHhhcCHHHHHHHCCCC-------CCeEEeCCCCHHHHHHHHHHHcCCCCc
Confidence 3455653 6777766666 5899999987531 5689998 6688999999999876543
No 9
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=42.79 E-value=10 Score=22.38 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=15.4
Q ss_pred cccCCHHHHHHHHH----hHHhcC
Q 035928 56 IYINHPLFMQLLKE----AEEEYG 75 (118)
Q Consensus 56 ~yLnhP~F~~LL~~----AEEEfG 75 (118)
..|+.|-||+||+- |.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 46899999999974 556664
No 10
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=40.46 E-value=27 Score=24.29 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCceEEEEEccCCCceeEEEEEecccC-CHHHHHHHHHhHHhcCcC-CCCCeEEccCHHHHHHHHHHHhccCC
Q 035928 33 PKGCLAILVGQEGEEQQKFVIPVIYIN-HPLFMQLLKEAEEEYGFD-QKGPITLPCHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 33 pkG~~aVYVG~~gee~kRFvVPv~yLn-hP~F~~LL~~AEEEfGf~-~~G~L~IPCd~~~Fe~vl~~i~~~~~ 103 (118)
....+.+.||. +||.+..+-|. .|- .+|..++...-+. .+|.+-|-.+...|+.||..+.....
T Consensus 11 ~~~~V~LNVGG-----~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR~G~l 76 (124)
T 1s1g_A 11 QDELIVLNVSG-----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKL 76 (124)
T ss_dssp -CCEEEEEETT-----EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHHHSCB
T ss_pred CCCEEEEEeCC-----EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHHHHhcCCC
Confidence 45688999984 89999987764 332 2344444433333 46999999999999999999987643
No 11
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=39.01 E-value=3.9 Score=29.40 Aligned_cols=13 Identities=46% Similarity=0.833 Sum_probs=10.0
Q ss_pred cccCCHHHHHHHH
Q 035928 56 IYINHPLFMQLLK 68 (118)
Q Consensus 56 ~yLnhP~F~~LL~ 68 (118)
.|||||.|..|-+
T Consensus 28 ~YLNHPTFGLLyr 40 (112)
T 3n5b_B 28 TYINHPTWGLLYR 40 (112)
T ss_dssp CEEEETTTEEEEE
T ss_pred hhccCCccchhee
Confidence 3999999976644
No 12
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=38.25 E-value=33 Score=22.30 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=39.3
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc--cCHHHHHHHHHHHhcc
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP--CHVEEFRTVQGMIDKD 101 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP--Cd~~~Fe~vl~~i~~~ 101 (118)
+.+.||. ++|-+.-..| ..|.|++++.....| +..|.|| .+...|+.++..|...
T Consensus 35 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~~~~e-----~~~i~l~~~~~~~~f~~~l~~iYtg 93 (125)
T 3ohu_A 35 VTLIVER-----KEFRAHRAVLAACSEYFWQALVGQTKN-----DLVVSLPEEVTARGFGPLLQFAYTA 93 (125)
T ss_dssp EEEEETT-----EEEEECHHHHHHHBHHHHHHHTTCCCS-----SCEEECCTTCCHHHHHHHHHHHTTS
T ss_pred eEEEECC-----EEEechHHHHHHcCHHHHHHhcCCCCC-----CcEEEeCCCCCHHHHHHHHHhHcCC
Confidence 4556653 5666666655 479999998764332 4678887 7999999999998754
No 13
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=37.57 E-value=66 Score=19.56 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHH
Q 035928 31 NIPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEE 72 (118)
Q Consensus 31 ~vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEE 72 (118)
.-.+||+...+..+.++..+|++=..| ++.|.|+++++...+
T Consensus 33 ~~epG~l~~~~~~~~~~p~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~~ 83 (94)
T 2fb0_A 33 LKEEGCIAYDTFESSTRRDVFMICETWQNAEVLAAHEKTAHFAQYVGIIQE 83 (94)
T ss_dssp TTSTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHHH
T ss_pred hcCCCceEEEEEEcCCCCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHH
Confidence 346799988887644456788887665 788899998888764
No 14
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=37.51 E-value=43 Score=22.46 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=30.4
Q ss_pred ceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCCCCeEE
Q 035928 35 GCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITL 84 (118)
Q Consensus 35 G~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~G~L~I 84 (118)
+-+.|-+-=+ ++..|+.||. ...|++|.++-.+-|++..+.++++
T Consensus 5 ~~vkvK~~~~-gdi~~~~v~~----~i~~~~L~~kv~~~~~~~~~~~f~l 49 (89)
T 1vd2_A 5 SQVRVKAYYR-GDIMITHFEP----SISFEGLCNEVRDMCSFDNEQLFTM 49 (89)
T ss_dssp SCEEEEEESS-SCEEEEEECT----TCCHHHHHHHHHHHTTCCSSCCEEE
T ss_pred CeEEEEEEeC-CeEEEEECCC----CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 3445544221 2577888887 4689999999999999865444443
No 15
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=37.50 E-value=25 Score=23.98 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=9.2
Q ss_pred HHHHHHHhHHhcC
Q 035928 63 FMQLLKEAEEEYG 75 (118)
Q Consensus 63 F~~LL~~AEEEfG 75 (118)
+.+-|+.||+||+
T Consensus 56 LdEAlE~AE~eYe 68 (84)
T 2lmc_A 56 LDEALELAEWQYV 68 (84)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhh
Confidence 5566777887884
No 16
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.05 E-value=39 Score=24.40 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=17.1
Q ss_pred cccccCCCCCCCCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhH---HhcCcC
Q 035928 18 IHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAE---EEYGFD 77 (118)
Q Consensus 18 ~~~~~~~~k~~~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AE---EEfGf~ 77 (118)
.|.||||+++... +.+.|.+- -+++|.|..+++-.+ ++.||.
T Consensus 4 ~~~~~~~~~~~~s----~~Igvi~~--------------~~~~~~~~~~~~gi~~~a~~~g~~ 48 (289)
T 2fep_A 4 SHHHHHHGSSKKT----TTVGVIIP--------------DISSIFYSELARGIEDIATMYKYN 48 (289)
T ss_dssp ------------C----CEEEEEES--------------CTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccCCC----CeEEEEeC--------------CCCCchHHHHHHHHHHHHHHcCCE
Confidence 3456667655433 34555552 256777777765543 456664
No 17
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=34.15 E-value=76 Score=20.48 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=40.3
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEcc-CHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLPC-HVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IPC-d~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++.. ++..|.|+- +.+.|+.++..+......
T Consensus 30 v~l~v~~-----~~~~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~ 87 (119)
T 2q81_A 30 CTFVVDG-----VHFKAHKAVLAACSEYFKMLFVD--------QKDVVHLDISNAAGLGQVLEFMYTAKLS 87 (119)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHHH--------CCSGGGGGGCCHHHHHHHHHHHHHSCCC
T ss_pred eEEEECC-----EEEehhHHHHHHcCHHHHHHHcC--------CCCEEEeCCCCHHHHHHHHHHHcCCCCc
Confidence 3455653 6777777777 58999999985 234677775 788999999999876543
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=32.65 E-value=80 Score=21.17 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=42.8
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~ 103 (118)
+.+.||. ++|-+.-..| ..|.|++++...-.| ..+..|.|| .+.+.|+.++..+.....
T Consensus 37 v~l~v~~-----~~~~~Hk~iL~~~S~~F~~~f~~~~~e---~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 37 CCLCVAG-----QEFQAHKAILAARSPVFSAMFEHEMEE---SKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHHSCCCG---GGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred eEEEECC-----EEEEeeHHHHHHcCHHHHHHHccCccc---cCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 5666763 5787777776 579999999853222 134678887 689999999999986654
No 19
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=31.65 E-value=70 Score=20.15 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=31.6
Q ss_pred CCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHHh
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEEE 73 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEEE 73 (118)
-.+||+...+..+.++..+|++=..| ++.|.|+++++...+-
T Consensus 31 ~epG~l~~~~~~~~~~p~~~~~~E~w~d~~a~~~h~~s~~~~~~~~~~~~~ 81 (106)
T 2gff_A 31 REAGNLRFDVLRDEHIPTRFYIYEAYTDEAAVAIHKTTPHYLQCVEQLAPL 81 (106)
T ss_dssp TSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGG
T ss_pred CCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45799998887644456788887766 7888999988877653
No 20
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=30.96 E-value=1.2e+02 Score=20.52 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=41.2
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~ 103 (118)
+.+.||. ++|-+.-..| ..|.|++++...-.|-. .....|.|+ .+.+.|+.++..|.....
T Consensus 50 v~l~v~~-----~~f~aHk~vLaa~S~yF~~mf~~~~~e~e-~~~~~I~l~~v~~~~f~~lL~fiYtg~~ 113 (144)
T 2ppi_A 50 AHLVLDG-----EEIPVQKNILAAASPYIRTKLNYNPPKDD-GSTYKIELEGISVMVMREILDYIFSGQI 113 (144)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHHHCC------CCCEEECCSSCHHHHHHHHHHHTTSCC
T ss_pred eEEEECC-----EEEehHHHHHHHcCHHHHHHHcCCCcccc-CCCcEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 4455653 6777776666 48999999976321100 135678998 489999999999986544
No 21
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=30.67 E-value=86 Score=20.23 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=40.2
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++.. ....|.|+ .+.+.|+.++..+......
T Consensus 31 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~--------~~~~i~l~~~~~~~f~~ll~~~Ytg~~~ 88 (121)
T 1buo_A 31 VVIMVDS-----QEFHAHRTVLACTSKMFEILFHR--------NSQHYTLDFLSPKTFQQILEYAYTATLQ 88 (121)
T ss_dssp EEEEESS-----CEEEECHHHHHHHCHHHHHHTTS--------CCSEEEECSSCHHHHHHHHHHHHHSCCC
T ss_pred EEEEECC-----EEEehhHHHHhhcCHHHHHHHcC--------CCcEEEeCCCCHHHHHHHHHhhcCCCcC
Confidence 4455653 5677666665 68999999863 24568888 7899999999999876543
No 22
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase, lipid synthesis, mitochondrion transfer transferase; HET: AE4; 1.55A {Homo sapiens}
Probab=29.90 E-value=14 Score=29.03 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.1
Q ss_pred cccCCHHHHHHHHHhHHhcCcC
Q 035928 56 IYINHPLFMQLLKEAEEEYGFD 77 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEfGf~ 77 (118)
+++..|.|++.++++.+..|++
T Consensus 44 ~L~~~p~fr~~~~~~~~~lg~~ 65 (339)
T 2c2n_A 44 GLLNYPRVRELYAAARRVLGYD 65 (339)
T ss_dssp TTTTSTTHHHHHHHHHHHHSSC
T ss_pred HHHhChHHHHHHHHHHHHhCCC
Confidence 3456799999999999988865
No 23
>2qdl_A Chemotaxis signal transduction protein; beta-barrel, signaling protein; 2.20A {Thermoanaerobacter tengcongensis}
Probab=27.45 E-value=69 Score=22.38 Aligned_cols=23 Identities=9% Similarity=0.364 Sum_probs=17.9
Q ss_pred CCCceEEEEEccCCCceeEEEEEecccC
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIYIN 59 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~yLn 59 (118)
...-++.+.+|. ++|.||+....
T Consensus 10 ~~~~~l~f~lg~-----~~yaip~~~V~ 32 (165)
T 2qdl_A 10 MPKKIVVFSLAE-----ELYGLDIFDVH 32 (165)
T ss_dssp CCEEEEEEEETT-----EEEEEEGGGCC
T ss_pred CcceEEEEEECC-----EEEEEEHHHeE
Confidence 445688999985 89999998753
No 24
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=26.68 E-value=1.1e+02 Score=20.41 Aligned_cols=43 Identities=16% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHHh
Q 035928 31 NIPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEEE 73 (118)
Q Consensus 31 ~vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEEE 73 (118)
.-.+||+...+-.+.++..+|++=-.| ++.|.|+++++..++-
T Consensus 49 r~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~l 100 (122)
T 4dn9_A 49 SSMPGCLSYVVAQDPKDPDAIWITEVWDSPESHKASLSLPSVQDAIACGRPL 100 (122)
T ss_dssp TTCTTEEEEEEEEETTEEEEEEEEEEESCHHHHHHGGGSHHHHHHHHHHGGG
T ss_pred hCCCCCEEEEEEecCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHH
Confidence 346899988887644577899886654 8889999999887643
No 25
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=26.15 E-value=93 Score=20.13 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=38.4
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~ 103 (118)
+.+.||. ++|-+--..| ..|.|++++... ...|.|+ .+...|+.++..|.....
T Consensus 34 v~l~v~~-----~~f~aHk~vLaa~S~~F~~~f~~~--------~~~i~l~~~~~~~f~~~l~~~Ytg~~ 90 (116)
T 3fkc_A 34 VTVIVED-----RKFRAHKNILSASSTYFHQLFSVA--------GQVVELSFIRAEIFAEILNYIYSSKI 90 (116)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHTTSC--------CSEEEECSSCHHHHHHHHHHHTTSCC
T ss_pred EEEEECC-----EEEehhHHHHHHcCHHHHHHHcCC--------CCEEEeCCCCHHHHHHHHHhhcCCCc
Confidence 3455653 5666655554 568899888653 4578886 899999999999876544
No 26
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=26.13 E-value=61 Score=22.01 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=24.7
Q ss_pred ceeEEEEEecccCCHHHHHHHHHhHHhcCcCC
Q 035928 47 EQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ 78 (118)
Q Consensus 47 e~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~ 78 (118)
..+|+.|++. ..-.+.++|++|-+.||++.
T Consensus 18 n~rr~~VKvt--p~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 18 NGRRHTVKVT--PSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp TSCEEEECCC--TTSBHHHHHHHHHHHTTCCG
T ss_pred CCcEEEEEEC--CCCCHHHHHHHHHHHhCCCh
Confidence 5689999883 44578899999999999985
No 27
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=26.05 E-value=84 Score=20.88 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=38.4
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++.... +..|.|+ .+.+.|+.++..|......
T Consensus 28 v~l~v~~-----~~f~aHk~vLaa~S~yF~~mf~~~~-------~~~i~l~~~~~~~f~~lL~fiYtg~~~ 86 (135)
T 2yy9_A 28 ATLDVGG-----LVFKAHWSVLACCSHFFQRIYGDGT-------GGSVVLPAGFAEIFGLLLDFFYTGHLA 86 (135)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHTCC-----------CCEEECGGGHHHHHHHHHHHHHSCCC
T ss_pred eEEEECC-----EEEehHHHHHHHhCHHHHHHHcCCC-------CCeEEeCCCCHHHHHHHHHHHhCCCCC
Confidence 4456653 6777666655 4789998886532 4679998 6788999999999876543
No 28
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=26.01 E-value=16 Score=23.67 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=18.0
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgms~~eF 49 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 29
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=25.24 E-value=8.7 Score=26.55 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=9.8
Q ss_pred cccCCHHHHHHHH
Q 035928 56 IYINHPLFMQLLK 68 (118)
Q Consensus 56 ~yLnhP~F~~LL~ 68 (118)
.|||||.|..|-.
T Consensus 5 ~YLNHPtFGlLy~ 17 (89)
T 2xko_C 5 NYLNHPTFGLLYQ 17 (89)
T ss_dssp CEEEETTTEEEEE
T ss_pred ccccCCccchhhe
Confidence 5999999876543
No 30
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=25.22 E-value=79 Score=20.54 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc--cCHHHHHHHHHHHhcc
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP--CHVEEFRTVQGMIDKD 101 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP--Cd~~~Fe~vl~~i~~~ 101 (118)
+.+.||. ++|-+--..| ..|.|++++.....| ...+.|| .+...|+.++..+...
T Consensus 32 v~l~v~~-----~~~~aHk~vLaa~S~yF~~mf~~~~~e-----~~~i~l~~~v~~~~f~~lL~~iYtg 90 (124)
T 2ihc_A 32 VTIFVEG-----QRFRAHRSVLAACSSYFHSRIVGQADG-----ELNITLPEEVTVKGFEPLIQFAYTA 90 (124)
T ss_dssp EEEEETT-----EEEEECHHHHHHHBHHHHHHHTTC--------CEEEECCTTSCHHHHHHHHHHHHHS
T ss_pred EEEEECC-----EEEecHHHHHHHcCHHHHHHHcCCCCC-----CceEeecCCcCHHHHHHHHHHhcCC
Confidence 3455653 6777666666 589999999754322 3468885 7889999999988765
No 31
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=24.52 E-value=49 Score=23.52 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=45.8
Q ss_pred CCceEEEEEccCCCceeEEEEEecccC-CHHHHHHHHHhHHhcCcC-CCCCeEEccCHHHHHHHHHHHhccCC
Q 035928 33 PKGCLAILVGQEGEEQQKFVIPVIYIN-HPLFMQLLKEAEEEYGFD-QKGPITLPCHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 33 pkG~~aVYVG~~gee~kRFvVPv~yLn-hP~F~~LL~~AEEEfGf~-~~G~L~IPCd~~~Fe~vl~~i~~~~~ 103 (118)
....+.+.||. +||.+..+-|. .|- .+|..++...-+. .+|.+-|-.+...|++||..+.....
T Consensus 33 ~~~~V~LNVGG-----~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR~G~l 98 (140)
T 2nz0_B 33 QDELIVLNVSG-----RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYRTGKL 98 (140)
T ss_dssp CCCEEEEEETT-----EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHHHSSB
T ss_pred CCCEEEEEECC-----EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHhcCCc
Confidence 45789999984 89999887663 331 2344444433333 46899999999999999999987543
No 32
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=24.48 E-value=1.2e+02 Score=19.22 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred CCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHH
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEE 72 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEE 72 (118)
..+||+...+-.+.++..+|++=-.| ++.|.|+++++...+
T Consensus 36 ~EpGcl~y~~~~~~~~p~~~~~~E~w~d~~a~~~H~~s~~~~~~~~~~~~ 85 (105)
T 3kkf_A 36 LEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSHIATPHFKKYKEGTLD 85 (105)
T ss_dssp HCTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHHHTSHHHHHHHHHHGG
T ss_pred CCCCcEEEEEEEeCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHH
Confidence 35799988776544567788886655 788888888887764
No 33
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=24.39 E-value=90 Score=20.27 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=41.5
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc-cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP-CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP-Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++...-.|- ....|.|| .+.+.|+.++..+......
T Consensus 28 v~l~v~~-----~~~~~Hk~iL~~~S~~F~~~f~~~~~e~---~~~~i~l~~~~~~~~~~~l~~~Y~~~~~ 90 (145)
T 4eoz_A 28 CCLCVAG-----QEFQAHKAILAARSPVFSAMFEHEMEES---KKNRVEINDVEPEVFKEMMCFIYTGKAP 90 (145)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHHSSSHHH---HHTEEEECSSCHHHHHHHHHHHHHSCCT
T ss_pred eEEEECC-----EEEEeehHHHHHcCHHHHHHHcCCCcCC---CCceEEecCCCHHHHHHHHHhhccCccC
Confidence 4566663 5676665555 5799999997532221 23578887 7899999999998866543
No 34
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=24.19 E-value=45 Score=18.35 Aligned_cols=13 Identities=31% Similarity=0.800 Sum_probs=10.7
Q ss_pred HHHHHHHhHHhcC
Q 035928 63 FMQLLKEAEEEYG 75 (118)
Q Consensus 63 F~~LL~~AEEEfG 75 (118)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4678888899997
No 35
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=23.72 E-value=80 Score=19.28 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=28.2
Q ss_pred CCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhH
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAE 71 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AE 71 (118)
-.+||+...+....++..+|++=..| ++.|.|+++++...
T Consensus 36 ~epG~l~~~~~~~~~~p~~~~~~e~w~~~~a~~~h~~s~~~~~~~~~~~ 84 (99)
T 1x7v_A 36 AEAGCLQYDLHQDRHDSHLFYMIEQWRDDAALERHQNTEHFLRFSRGNE 84 (99)
T ss_dssp HSTTEEEEEEEECSSCTTEEEEEEEESSHHHHHHHHTSHHHHHHHTTCG
T ss_pred CCCCceEEEEEecCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHH
Confidence 35799988887644456788887666 66777777776654
No 36
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=23.63 E-value=22 Score=24.17 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=18.2
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.|+.+||
T Consensus 46 ~YLSdedF~~vFgMsr~eF 64 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEF 64 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 37
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=23.56 E-value=1.5e+02 Score=19.60 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=32.6
Q ss_pred CCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHHhc
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEEEY 74 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEEEf 74 (118)
..+||+...+-.+.++..+|++=-.| ++.|.|+++++..++-+
T Consensus 55 ~EpGcl~y~l~~~~~dp~~f~~~E~W~d~ea~~aH~~s~~f~~~~~~~~~ll 106 (119)
T 4dpo_A 55 KEEGCIDYGVYQELENPEILTMLEEWKDEGSLDQHIRSDHFKEIFPLLSECL 106 (119)
T ss_dssp TSTTEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHTSHHHHHHHHHHHHTB
T ss_pred cCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 46799988887644567889887655 78899999998886543
No 38
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=23.09 E-value=55 Score=22.67 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=13.7
Q ss_pred cccCCCCCCCCCCCCceEEEEEcc
Q 035928 20 FHHHGKKDEMRNIPKGCLAILVGQ 43 (118)
Q Consensus 20 ~~~~~~k~~~~~vpkG~~aVYVG~ 43 (118)
.||||+.--.+.+++|.+...+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~~i~i~G~ 29 (207)
T 2qt1_A 6 HHHHHSSGLVPRGSKTFIIGISGV 29 (207)
T ss_dssp --------CCCCSCCCEEEEEEES
T ss_pred ccccccccccccCCCCeEEEEECC
Confidence 456666677788999999888985
No 39
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=22.86 E-value=15 Score=23.79 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=17.9
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.|+.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 40
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=22.52 E-value=1.2e+02 Score=20.12 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=30.3
Q ss_pred CCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHHh
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEEE 73 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEEE 73 (118)
..+||+...+-.+.++..+|++=..| ++.|.|+++++...+-
T Consensus 53 ~EpGcl~y~l~~~~~dp~~f~~~E~W~d~eal~aH~~s~~~~~~~~~~~~l 103 (124)
T 2omo_A 53 REPGNMRFDILQSADDPTRFVLYEAYKTRKDAAAHKETAHYLTWRDTVADW 103 (124)
T ss_dssp TSTTEEEEEEEEESSCTTEEEEEEEESSHHHHHHHTTSHHHHHHHHHHGGG
T ss_pred cCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35688877776533456788887666 7789999999887653
No 41
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT, transferase; 2.50A {Helicobacter pylori}
Probab=22.46 E-value=15 Score=28.99 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHhHHhcCcC
Q 035928 58 INHPLFMQLLKEAEEEYGFD 77 (118)
Q Consensus 58 LnhP~F~~LL~~AEEEfGf~ 77 (118)
-+.|.|++.++++.+-+|++
T Consensus 35 ~~~p~fr~~~~~~~~~lg~~ 54 (321)
T 2h1y_A 35 EGHTLAKELFERASNALKVD 54 (321)
T ss_dssp HHCHHHHHHHHHHHHHHTSC
T ss_pred HhCHHHHHHHHHHHHHcCCC
Confidence 34799999999999988864
No 42
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6
Probab=22.33 E-value=84 Score=20.00 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=31.5
Q ss_pred CCCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHH
Q 035928 31 NIPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEE 72 (118)
Q Consensus 31 ~vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEE 72 (118)
...+||+...+-...++..+|++=-.| ++.|.|+++++.+++
T Consensus 43 r~epGcl~~~~~~~~~~p~~~~~~E~w~d~~a~~~H~~s~~~~~~~~~~~~ 93 (105)
T 1q8b_A 43 NKEEGCITFHAYPLEPSERKIMLWEIWENEEAVKIHFTKKHTIDVQKQELT 93 (105)
T ss_dssp TTSTTEEEEEEEECCGGGCEEEEEEEESSHHHHHHHTTSHHHHHHHTTTCE
T ss_pred hcCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHH
Confidence 346899999887644567889887766 778888888877643
No 43
>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=21.82 E-value=1e+02 Score=20.01 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=29.9
Q ss_pred CCCceEEEEEccCCCceeEEEEEecc---------cCCHHHHHHHHHhHH
Q 035928 32 IPKGCLAILVGQEGEEQQKFVIPVIY---------INHPLFMQLLKEAEE 72 (118)
Q Consensus 32 vpkG~~aVYVG~~gee~kRFvVPv~y---------LnhP~F~~LL~~AEE 72 (118)
-.+||+...+....++..+|++=..| ++.|.|+++++..++
T Consensus 51 ~EpGcl~y~l~~~~~~p~~f~~~E~W~d~ea~~aH~~s~~~~~~~~~~~~ 100 (115)
T 3bm7_A 51 NEPGCLVYQLTRSKTEEGVYKVLELYASMDALKHHGGTDYFKAAGAAMGP 100 (115)
T ss_dssp HCTTEEEEEEEECSSSTTEEEEEEEESSHHHHHHHHHCHHHHHHHHHHGG
T ss_pred CCCCcEEEEEEEcCCCCCEEEEEEEECCHHHHHHHhCCHHHHHHHHHHHH
Confidence 35799998887644456788887776 667778888777643
No 44
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=21.71 E-value=1.1e+02 Score=20.27 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEEEEccCCCceeEEEEEeccc--CCHHHHHHHHHhHHhcCcCCCCCeEEc--cCHHHHHHHHHHHhccCCC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI--NHPLFMQLLKEAEEEYGFDQKGPITLP--CHVEEFRTVQGMIDKDRSL 104 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL--nhP~F~~LL~~AEEEfGf~~~G~L~IP--Cd~~~Fe~vl~~i~~~~~~ 104 (118)
+.+.||. ++|-+.-..| ..|.|++++.... .....+.|| -+...|+.+|..|......
T Consensus 39 v~l~v~~-----~~f~aHk~vLaa~S~yF~~~f~~~~-----~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~ 100 (138)
T 2z8h_A 39 VTVLVEG-----QRFRAHRSVLAACSSYFHSRIVGQT-----DAELTVTLPEEVTVKGFEPLIQFAYTAKLI 100 (138)
T ss_dssp EEEEETT-----EEEEECHHHHHHHCHHHHHHHTTCC-----CTTEEEECCTTSCHHHHHHHHHHHHHSCCC
T ss_pred eEEEECC-----EEEechHHHHHHcCHHHHHHHhcCC-----CCCceEEeCCCCCHHHHHHHHHHhcCCCcc
Confidence 4556653 6777766666 5899999986532 223468885 6889999999999876543
No 45
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=21.57 E-value=1.7e+02 Score=18.80 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=30.5
Q ss_pred cccCCCCCCCCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCC
Q 035928 20 FHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ 78 (118)
Q Consensus 20 ~~~~~~k~~~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~ 78 (118)
.|+||+.--......+-+-|.|=.. ..+|.|.++ ..-.+.+|-++-++..|...
T Consensus 6 ~~~~~~~~~~~~~~~~~m~I~Vk~~---~g~~~l~v~--~~~TV~~LK~~I~~~~gip~ 59 (100)
T 1yqb_A 6 HHHHHSSGLVPRGSPHLIKVTVKTP---KDKEDFSVT--DTCTIQQLKEEISQRFKAHP 59 (100)
T ss_dssp ------CTTCCSCCTTEEEEEEECS---SCEEEEEEE--TTCBHHHHHHHHHHHHTCCG
T ss_pred ccccccccCCCCCCCCeEEEEEEcC---CCcEEEEEC--CCCcHHHHHHHHHHHHCcCh
Confidence 3444444444555567788888431 123655544 45678899999888888763
No 46
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=20.75 E-value=18 Score=23.31 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=18.1
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsdedF~~vFgmsr~eF 49 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEY 49 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
Done!