Query 035928
Match_columns 118
No_of_seqs 116 out of 614
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 12:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1unda_ a.14.1.1 (A:) Advillin 46.4 2.3 0.00016 23.4 0.3 18 57-74 1-18 (36)
2 d1t1da_ d.42.1.2 (A:) Shaker p 36.1 10 0.00073 23.9 2.3 58 37-101 3-63 (100)
3 d2bkfa1 d.15.2.2 (A:1-85) Next 33.7 42 0.0031 20.9 5.1 50 46-98 13-71 (85)
4 d1nn7a_ d.42.1.2 (A:) Potassiu 32.7 7.2 0.00052 24.7 1.1 59 37-102 2-62 (105)
5 d1t2da2 d.162.1.1 (A:151-315) 30.1 30 0.0022 22.4 4.1 32 37-73 126-157 (165)
6 d1tjya_ c.93.1.1 (A:) AI-2 rec 29.1 27 0.0019 23.1 3.7 31 47-77 2-35 (316)
7 d3kvta_ d.42.1.2 (A:) akv3.1 v 27.1 11 0.00077 23.7 1.2 60 36-103 3-66 (103)
8 d1yu5x1 a.14.1.1 (X:10-76) Vil 27.0 7.1 0.00052 23.9 0.3 19 56-74 31-49 (67)
9 d1y74b1 a.194.1.1 (B:83-132) P 25.5 12 0.00087 21.8 1.1 20 56-75 26-49 (50)
10 d1ujsa_ a.14.1.1 (A:) Actin-bi 23.1 11 0.00079 24.2 0.6 19 56-74 46-64 (88)
11 d3buxb3 d.93.1.1 (B:264-351) C 22.1 34 0.0024 21.8 2.9 23 52-74 51-73 (88)
12 d1qzpa_ a.14.1.1 (A:) Dematin 22.0 7.3 0.00053 23.9 -0.4 19 56-74 32-50 (68)
13 d1qusa_ d.2.1.6 (A:) 36 kDa so 20.3 28 0.002 26.4 2.6 45 55-99 13-57 (322)
No 1
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.44 E-value=2.3 Score=23.43 Aligned_cols=18 Identities=11% Similarity=0.436 Sum_probs=16.4
Q ss_pred ccCCHHHHHHHHHhHHhc
Q 035928 57 YINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 57 yLnhP~F~~LL~~AEEEf 74 (118)
||+.-.|++++.++.+||
T Consensus 1 yLsd~dF~~vFgmsr~eF 18 (36)
T d1unda_ 1 YLSEQDFVSVFGITRGQF 18 (36)
T ss_dssp CCCHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHH
Confidence 788899999999999987
No 2
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=36.06 E-value=10 Score=23.88 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred EEEEEccCCCceeEEEEEecccCC-H--HHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHHhcc
Q 035928 37 LAILVGQEGEEQQKFVIPVIYINH-P--LFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKD 101 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yLnh-P--~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i~~~ 101 (118)
+.+-||. ++|.+..+-|.. | ++..|..... .+ -+.+|.+-|--|...|++||.-+...
T Consensus 3 I~LNVGG-----~~f~t~~~tL~~~p~s~l~~l~~~~~-~~-~~~~g~~FiDRdp~~F~~IL~flR~~ 63 (100)
T d1t1da_ 3 VVINVSG-----LRFETQLKTLNQFPDTLLGNPQKRNR-YY-DPLRNEYFFDRNRPSFDAILYFYQSG 63 (100)
T ss_dssp EEEEETT-----EEEEEEHHHHHTSTTSTTTCHHHHGG-GE-ETTTTEEEECSCSTTHHHHHHHHHTT
T ss_pred EEEEECC-----EEEEEeHHHHhhCCCchhHHHHhCCC-cC-CCCCCeEEEecCHHHHHHHHHHHhcC
Confidence 5678884 899998877654 4 4444433221 11 13478999999999999999998653
No 3
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.69 E-value=42 Score=20.94 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=35.2
Q ss_pred CceeEEEEEecccCCHHHHHHHHHhHHhcCcCC--------C-CCeEEccCHHHHHHHHHHH
Q 035928 46 EEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ--------K-GPITLPCHVEEFRTVQGMI 98 (118)
Q Consensus 46 ee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~--------~-G~L~IPCd~~~Fe~vl~~i 98 (118)
++..||.|+.. +.+.|.+|..+-+.-|+.+. + --++|.|+++. +..+...
T Consensus 13 ~dt~RF~ls~~--~~~~~~~L~~~i~~rf~l~~~~lkY~Ddd~e~v~l~~d~dl-~E~~~~a 71 (85)
T d2bkfa1 13 NEIQSFLVSDP--ENTTWADIEAMVKVSFDLNTIQIKYLDEENEEVSINSQGEY-EEALKMA 71 (85)
T ss_dssp TEEEEEEESCG--GGCCHHHHHHHHHHHHTCSSEEEEEECTTSCEEEECSHHHH-HHHHHHH
T ss_pred CceEEEEecCC--CCCcHHHHHHHHHHhcCcccceEEEEcCCCCEEEEecHHHH-HHHHHHH
Confidence 38899998543 46789999999999888541 2 34889999864 4444443
No 4
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.69 E-value=7.2 Score=24.73 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=40.7
Q ss_pred EEEEEccCCCceeEEEEEeccc-CCHHHHHHHHHhH-HhcCcCCCCCeEEccCHHHHHHHHHHHhccC
Q 035928 37 LAILVGQEGEEQQKFVIPVIYI-NHPLFMQLLKEAE-EEYGFDQKGPITLPCHVEEFRTVQGMIDKDR 102 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yL-nhP~F~~LL~~AE-EEfGf~~~G~L~IPCd~~~Fe~vl~~i~~~~ 102 (118)
+.+.||. ++|.+..+-| +.|.. +|.+.. ..+--+.+|.+-|-.|...|+.||..+....
T Consensus 2 I~LNVGG-----~~f~t~~~TL~~~p~s--~l~~~~~~~~~~~~~~~~FiDRdp~~F~~IL~ylR~G~ 62 (105)
T d1nn7a_ 2 IVLNVSG-----TRFQTWQDTLERYPDT--LLGSSERDFFYHPETQQYFFDRDPDIFRHILNFYRTGK 62 (105)
T ss_dssp EEEEETT-----EEEEECHHHHHTSCSS--STTSGGGGGGEEGGGTEEEECSCTTTHHHHHHHHHHSC
T ss_pred EEEEECC-----EEEEEeHHHHhcCCCC--CccccccccCcCCCCCcEEEeCCHHHHHHHHHHHhcCc
Confidence 5678884 8999998876 44431 122222 2222234789999999999999999998654
No 5
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=30.06 E-value=30 Score=22.42 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=22.5
Q ss_pred EEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHh
Q 035928 37 LAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEE 73 (118)
Q Consensus 37 ~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEE 73 (118)
+||-+|+ +.-.=++++. || +.=+++|++|++|
T Consensus 126 ~Pv~lg~---~Gv~~i~~l~-L~-~~E~~~L~~s~~~ 157 (165)
T d1t2da2 126 TPVVLGA---NGVEQVIELQ-LN-SEEKAKFDEAIAE 157 (165)
T ss_dssp EEEEEET---TEEEEECCCC-CC-HHHHHHHHHHHHH
T ss_pred eeEEEcC---CceEEEeCCC-CC-HHHHHHHHHHHHH
Confidence 5777776 3344467776 65 7788999998876
No 6
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}
Probab=29.07 E-value=27 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=23.7
Q ss_pred ceeEEEEEecccCCHHHHHHHHH---hHHhcCcC
Q 035928 47 EQQKFVIPVIYINHPLFMQLLKE---AEEEYGFD 77 (118)
Q Consensus 47 e~kRFvVPv~yLnhP~F~~LL~~---AEEEfGf~ 77 (118)
+.+|..+=+..+++|.|+.+.+- +++++||+
T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~ 35 (316)
T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID 35 (316)
T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCE
Confidence 35777777889999999998655 44577865
No 7
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}
Probab=27.11 E-value=11 Score=23.74 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=42.2
Q ss_pred eEEEEEccCCCceeEEEEEecccCC-H--HHHHHHHHhHHhcCcC-CCCCeEEccCHHHHHHHHHHHhccCC
Q 035928 36 CLAILVGQEGEEQQKFVIPVIYINH-P--LFMQLLKEAEEEYGFD-QKGPITLPCHVEEFRTVQGMIDKDRS 103 (118)
Q Consensus 36 ~~aVYVG~~gee~kRFvVPv~yLnh-P--~F~~LL~~AEEEfGf~-~~G~L~IPCd~~~Fe~vl~~i~~~~~ 103 (118)
.+.+-||. ++|.+..+-|.. | .+..++ +....+. .+|.+-|--+...|++||..+.....
T Consensus 3 rI~LNVGG-----~~F~t~~~tL~~~~~s~l~~~~---~~~~~~~~~~~~~fiDRdp~~F~~IL~ylR~g~l 66 (103)
T d3kvta_ 3 RVIINVGG-----IRHETYKATLKKIPATRLSRLT---EGMLNYDPVLNEYFFDRHPGVFAQIINYYRSGKL 66 (103)
T ss_dssp EEEEEETT-----EEEEEEHHHHTTSCSSTTTTCC---TTSTTEETTTTEEEECSCTTTHHHHHHHHHHSCB
T ss_pred EEEEEECC-----EEEEEeHHHHhhCccchhHHHH---cCCCccCCCCCcEEecCCHHHHHHHHHHHccCCc
Confidence 46678884 999999887763 4 333322 2222333 36899999999999999999986543
No 8
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.98 E-value=7.1 Score=23.90 Aligned_cols=19 Identities=5% Similarity=0.125 Sum_probs=18.0
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.++.+||
T Consensus 31 ~yLsd~dF~~vFgms~~eF 49 (67)
T d1yu5x1 31 NHLSDEDFKAVFGMTRSAF 49 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 9
>d1y74b1 a.194.1.1 (B:83-132) Peripheral plasma membrane protein cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.52 E-value=12 Score=21.78 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=15.0
Q ss_pred cccCCHHHHHHHHH----hHHhcC
Q 035928 56 IYINHPLFMQLLKE----AEEEYG 75 (118)
Q Consensus 56 ~yLnhP~F~~LL~~----AEEEfG 75 (118)
..|+.|-||+||.- |.+-||
T Consensus 26 ~lL~~PH~~aLL~aHD~VA~k~Y~ 49 (50)
T d1y74b1 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHHHHHHHHHhcc
Confidence 46889999999974 555565
No 10
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.15 E-value=11 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=18.1
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.++.+||
T Consensus 46 ~YLSdedF~~vFgMsr~eF 64 (88)
T d1ujsa_ 46 RHLSQEEFYQVFGMTISEF 64 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHH
T ss_pred hcCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 11
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.05 E-value=34 Score=21.81 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=19.8
Q ss_pred EEEecccCCHHHHHHHHHhHHhc
Q 035928 52 VIPVIYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 52 vVPv~yLnhP~F~~LL~~AEEEf 74 (118)
++-+-=.|-|++|+|++-++|-|
T Consensus 51 IlQTIp~nk~L~qaLidG~reGf 73 (88)
T d3buxb3 51 ILQTIPHNKPLFQALIDGFREGF 73 (88)
T ss_dssp EEEECCSSCCHHHHHHHHHHHTS
T ss_pred eeeeccCccHHHHHHHhccccee
Confidence 56666789999999999999976
No 12
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.97 E-value=7.3 Score=23.93 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=18.0
Q ss_pred cccCCHHHHHHHHHhHHhc
Q 035928 56 IYINHPLFMQLLKEAEEEY 74 (118)
Q Consensus 56 ~yLnhP~F~~LL~~AEEEf 74 (118)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsd~dF~~vFgms~~eF 50 (68)
T d1qzpa_ 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 7999999999999999998
No 13
>d1qusa_ d.2.1.6 (A:) 36 kDa soluble lytic transglycosylase, SLT35 {Escherichia coli [TaxId: 562]}
Probab=20.31 E-value=28 Score=26.38 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=30.0
Q ss_pred ecccCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHHh
Q 035928 55 VIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMID 99 (118)
Q Consensus 55 v~yLnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i~ 99 (118)
-+|.++|.+++++++..+++||+.+=...+==.+....+|+.++.
T Consensus 13 ~dya~~p~v~~Fi~~la~~~G~s~~~l~~~f~~~k~~~~vi~~~~ 57 (322)
T d1qusa_ 13 GDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMD 57 (322)
T ss_dssp STTTTCHHHHHHHHHHHHHHCCCHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHhCCCHHHHHHHHHhCcccHHHHHHHh
Confidence 368999999999999999999986311111123444455555543
Done!