Query 035932
Match_columns 433
No_of_seqs 373 out of 2895
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13947 GUB_WAK_bind: Wall-as 99.9 7.1E-28 1.5E-32 195.5 10.0 104 29-136 1-106 (106)
2 PF08488 WAK: Wall-associated 99.3 2E-12 4.3E-17 103.0 6.7 65 169-233 1-77 (103)
3 KOG1187 Serine/threonine prote 99.1 3.8E-11 8.3E-16 118.3 4.8 61 373-433 61-121 (361)
4 KOG1025 Epidermal growth facto 98.7 1.1E-08 2.3E-13 105.7 6.1 42 392-433 701-748 (1177)
5 KOG1219 Uncharacterized conser 98.5 4.6E-08 1E-12 108.5 3.9 65 235-304 3910-3977(4289)
6 KOG3653 Transforming growth fa 98.4 2.7E-07 6E-12 90.2 5.2 38 392-433 215-252 (534)
7 KOG0196 Tyrosine kinase, EPH ( 98.2 1.4E-07 3E-12 97.2 -1.7 59 375-433 608-680 (996)
8 KOG1219 Uncharacterized conser 98.0 5.3E-06 1.1E-10 93.0 4.9 66 235-304 3871-3938(4289)
9 KOG1214 Nidogen and related ba 97.9 1.1E-05 2.4E-10 83.2 5.1 67 235-303 792-861 (1289)
10 PF07645 EGF_CA: Calcium-bindi 97.8 7.3E-06 1.6E-10 54.1 0.8 31 269-299 1-34 (42)
11 KOG0193 Serine/threonine prote 97.7 1.3E-05 2.8E-10 81.0 1.0 41 391-433 396-438 (678)
12 PLN03224 probable serine/threo 97.6 3.6E-05 7.8E-10 79.2 3.6 48 385-432 143-207 (507)
13 PLN00113 leucine-rich repeat r 97.5 8.1E-05 1.8E-09 83.5 4.6 45 376-423 682-727 (968)
14 PF12662 cEGF: Complement Clr- 97.5 8.8E-05 1.9E-09 42.0 2.3 23 250-272 1-24 (24)
15 KOG1026 Nerve growth factor re 97.4 2.7E-05 5.8E-10 81.7 -0.7 45 389-433 488-539 (774)
16 KOG1095 Protein tyrosine kinas 97.2 0.00011 2.5E-09 79.8 1.7 45 389-433 694-745 (1025)
17 KOG4260 Uncharacterized conser 97.2 0.00032 6.9E-09 63.9 3.6 46 255-301 222-270 (350)
18 KOG4289 Cadherin EGF LAG seven 97.1 0.00029 6.2E-09 76.8 3.4 53 249-304 1220-1274(2531)
19 smart00179 EGF_CA Calcium-bind 97.0 0.00068 1.5E-08 43.5 3.3 35 269-303 1-38 (39)
20 KOG2052 Activin A type IB rece 96.6 0.00049 1.1E-08 67.5 -0.1 30 392-422 216-245 (513)
21 PHA02988 hypothetical protein; 96.5 0.0024 5.2E-08 60.9 4.0 47 371-423 9-55 (283)
22 KOG0194 Protein tyrosine kinas 96.5 0.0012 2.7E-08 66.7 1.6 43 391-433 161-211 (474)
23 KOG0658 Glycogen synthase kina 96.4 0.0023 4.9E-08 61.4 3.0 35 389-423 26-61 (364)
24 KOG0192 Tyrosine kinase specif 96.4 0.0022 4.7E-08 63.4 2.7 42 392-433 46-89 (362)
25 PRK09188 serine/threonine prot 96.3 0.0027 5.9E-08 62.7 3.1 35 386-420 17-53 (365)
26 KOG0199 ACK and related non-re 96.3 0.0047 1E-07 64.1 4.5 41 393-433 116-161 (1039)
27 cd00054 EGF_CA Calcium-binding 96.2 0.0053 1.2E-07 38.8 3.2 35 269-303 1-37 (38)
28 PLN03225 Serine/threonine-prot 96.0 0.0051 1.1E-07 64.7 3.6 38 385-422 130-172 (566)
29 KOG1214 Nidogen and related ba 96.0 0.0084 1.8E-07 62.7 4.9 66 235-302 701-769 (1289)
30 cd06639 STKc_myosinIIIB Cataly 96.0 0.0043 9.4E-08 59.1 2.7 47 376-422 11-58 (291)
31 cd05104 PTKc_Kit Catalytic dom 96.0 0.0041 8.9E-08 61.9 2.6 35 388-422 36-76 (375)
32 PTZ00284 protein kinase; Provi 96.0 0.0035 7.5E-08 64.4 2.1 44 378-421 120-164 (467)
33 PHA03099 epidermal growth fact 95.9 0.0021 4.5E-08 51.8 -0.2 35 270-304 42-81 (139)
34 cd05144 RIO2_C RIO kinase fami 95.8 0.011 2.3E-07 53.2 4.4 33 389-421 17-49 (198)
35 KOG4289 Cadherin EGF LAG seven 95.8 0.0066 1.4E-07 66.8 3.1 58 235-297 1246-1308(2531)
36 cd06638 STKc_myosinIIIA Cataly 95.7 0.0067 1.4E-07 57.5 2.8 45 377-421 8-53 (286)
37 PTZ00283 serine/threonine prot 95.7 0.0054 1.2E-07 63.5 2.2 43 380-422 25-68 (496)
38 cd05107 PTKc_PDGFR_beta Cataly 95.7 0.0058 1.3E-07 61.5 2.3 36 387-422 37-78 (401)
39 KOG4278 Protein tyrosine kinas 95.6 0.0043 9.4E-08 63.4 0.9 42 391-433 271-313 (1157)
40 KOG1006 Mitogen-activated prot 95.6 0.005 1.1E-07 56.9 1.0 54 373-433 57-112 (361)
41 KOG1094 Discoidin domain recep 95.5 0.013 2.8E-07 59.7 4.0 42 392-433 543-585 (807)
42 cd07877 STKc_p38alpha_MAPK14 C 95.5 0.0096 2.1E-07 58.5 2.9 46 377-422 7-53 (345)
43 cd05105 PTKc_PDGFR_alpha Catal 95.4 0.011 2.5E-07 59.4 3.3 48 386-433 36-90 (400)
44 PF00008 EGF: EGF-like domain 95.3 0.0074 1.6E-07 37.0 0.9 27 235-262 5-31 (32)
45 PF12947 EGF_3: EGF domain; I 95.3 0.011 2.4E-07 37.3 1.7 28 235-264 7-34 (36)
46 cd05106 PTKc_CSF-1R Catalytic 95.2 0.011 2.3E-07 59.0 2.4 35 388-422 39-79 (374)
47 KOG0197 Tyrosine kinases [Sign 95.2 0.013 2.9E-07 58.8 2.9 52 374-433 200-251 (468)
48 PLN00034 mitogen-activated pro 95.2 0.012 2.5E-07 58.1 2.5 31 392-422 79-110 (353)
49 KOG0663 Protein kinase PITSLRE 95.1 0.011 2.4E-07 56.3 1.9 35 388-422 77-112 (419)
50 PF00008 EGF: EGF-like domain 95.0 0.0059 1.3E-07 37.5 -0.1 26 276-301 3-31 (32)
51 KOG4257 Focal adhesion tyrosin 95.0 0.01 2.2E-07 60.9 1.3 45 389-433 391-441 (974)
52 cd06636 STKc_MAP4K4_6 Catalyti 94.9 0.02 4.3E-07 54.1 3.0 45 377-421 6-51 (282)
53 KOG4236 Serine/threonine prote 94.9 0.016 3.4E-07 58.4 2.3 31 392-422 569-600 (888)
54 cd01475 vWA_Matrilin VWA_Matri 94.8 0.02 4.4E-07 52.7 2.8 37 266-302 183-220 (224)
55 PTZ00036 glycogen synthase kin 94.8 0.023 4.9E-07 58.0 3.4 38 385-422 64-102 (440)
56 cd07878 STKc_p38beta_MAPK11 Ca 94.8 0.025 5.4E-07 55.4 3.6 37 386-422 14-51 (343)
57 PF12947 EGF_3: EGF domain; I 94.8 0.0077 1.7E-07 38.0 -0.1 27 277-303 6-34 (36)
58 cd06656 STKc_PAK3 Catalytic do 94.8 0.023 5E-07 54.4 3.2 43 388-430 20-63 (297)
59 KOG0605 NDR and related serine 94.7 0.021 4.6E-07 57.5 2.7 42 383-424 137-179 (550)
60 PF07645 EGF_CA: Calcium-bindi 94.6 0.014 3.1E-07 38.3 0.9 26 234-261 10-35 (42)
61 KOG0600 Cdc2-related protein k 94.5 0.017 3.7E-07 57.8 1.6 36 388-423 118-154 (560)
62 PF14670 FXa_inhibition: Coagu 94.5 0.011 2.4E-07 37.3 0.1 27 276-302 5-31 (36)
63 cd05596 STKc_ROCK Catalytic do 94.4 0.018 3.9E-07 57.2 1.4 40 382-421 38-78 (370)
64 PTZ00263 protein kinase A cata 94.3 0.021 4.5E-07 55.7 1.8 34 388-421 19-53 (329)
65 KOG0580 Serine/threonine prote 94.3 0.034 7.4E-07 50.7 2.9 35 386-420 21-56 (281)
66 cd06614 STKc_PAK Catalytic dom 94.1 0.034 7.4E-07 52.7 2.7 41 383-423 15-56 (286)
67 cd06657 STKc_PAK4 Catalytic do 94.1 0.042 9.1E-07 52.5 3.4 40 393-432 26-66 (292)
68 cd07880 STKc_p38gamma_MAPK12 C 94.1 0.042 9.1E-07 53.9 3.4 37 385-421 13-50 (343)
69 KOG0581 Mitogen-activated prot 94.0 0.05 1.1E-06 52.5 3.6 40 376-422 75-115 (364)
70 cd05621 STKc_ROCK2 Catalytic d 94.0 0.026 5.7E-07 56.1 1.8 42 380-421 36-78 (370)
71 cd06647 STKc_PAK_I Catalytic d 93.9 0.048 1E-06 52.1 3.4 46 387-432 19-65 (293)
72 cd06618 PKc_MKK7 Catalytic dom 93.9 0.045 9.8E-07 52.2 3.0 34 389-422 17-51 (296)
73 cd06607 STKc_TAO Catalytic dom 93.8 0.047 1E-06 52.4 3.0 35 388-422 16-51 (307)
74 smart00090 RIO RIO-like kinase 93.8 0.048 1E-06 50.6 2.9 35 388-422 29-65 (237)
75 cd06654 STKc_PAK1 Catalytic do 93.8 0.051 1.1E-06 52.0 3.2 43 388-430 21-64 (296)
76 KOG4260 Uncharacterized conser 93.8 0.033 7.1E-07 51.1 1.7 57 234-299 244-304 (350)
77 cd07876 STKc_JNK2 Catalytic do 93.7 0.045 9.7E-07 54.0 2.8 35 387-421 21-56 (359)
78 TIGR01982 UbiB 2-polyprenylphe 93.7 0.054 1.2E-06 55.1 3.3 34 388-422 119-152 (437)
79 cd06659 STKc_PAK6 Catalytic do 93.7 0.048 1E-06 52.2 2.8 40 393-432 27-67 (297)
80 cd06658 STKc_PAK5 Catalytic do 93.6 0.041 8.8E-07 52.6 2.3 40 393-432 28-68 (292)
81 cd06648 STKc_PAK_II Catalytic 93.6 0.059 1.3E-06 51.2 3.3 42 390-431 22-64 (285)
82 KOG0694 Serine/threonine prote 93.6 0.06 1.3E-06 55.9 3.4 39 385-423 366-405 (694)
83 cd00053 EGF Epidermal growth f 93.5 0.094 2E-06 32.2 3.1 26 276-301 5-32 (36)
84 cd07875 STKc_JNK1 Catalytic do 93.5 0.059 1.3E-06 53.2 3.2 36 386-421 23-59 (364)
85 cd05622 STKc_ROCK1 Catalytic d 93.4 0.054 1.2E-06 53.9 2.8 43 379-421 35-78 (371)
86 cd06655 STKc_PAK2 Catalytic do 93.3 0.058 1.3E-06 51.6 2.8 44 388-431 20-64 (296)
87 cd07879 STKc_p38delta_MAPK13 C 93.3 0.063 1.4E-06 52.5 3.1 35 387-421 15-50 (342)
88 cd06635 STKc_TAO1 Catalytic do 93.2 0.063 1.4E-06 51.9 2.9 34 389-422 27-61 (317)
89 smart00181 EGF Epidermal growt 93.2 0.11 2.5E-06 32.1 3.0 25 277-301 6-31 (35)
90 PTZ00426 cAMP-dependent protei 93.2 0.039 8.5E-07 54.1 1.3 34 388-421 31-66 (340)
91 cd07874 STKc_JNK3 Catalytic do 93.1 0.066 1.4E-06 52.6 2.8 37 386-422 16-53 (355)
92 cd05055 PTKc_PDGFR Catalytic d 93.0 0.054 1.2E-06 52.0 2.0 36 387-422 35-76 (302)
93 KOG0577 Serine/threonine prote 93.0 0.059 1.3E-06 55.2 2.3 46 377-425 19-65 (948)
94 cd05101 PTKc_FGFR2 Catalytic d 92.9 0.063 1.4E-06 51.4 2.2 34 389-422 17-58 (304)
95 KOG4721 Serine/threonine prote 92.8 0.029 6.2E-07 57.1 -0.3 46 374-427 118-163 (904)
96 PF03109 ABC1: ABC1 family; I 92.7 0.035 7.5E-07 45.7 0.2 33 389-422 14-46 (119)
97 KOG1217 Fibrillins and related 92.7 0.17 3.7E-06 51.6 5.3 62 240-303 243-306 (487)
98 cd00053 EGF Epidermal growth f 92.6 0.13 2.9E-06 31.5 2.8 26 235-262 7-32 (36)
99 cd07851 STKc_p38 Catalytic dom 92.5 0.08 1.7E-06 51.8 2.5 37 385-421 13-50 (343)
100 KOG0574 STE20-like serine/thre 92.5 0.015 3.2E-07 54.6 -2.5 35 389-423 35-70 (502)
101 smart00179 EGF_CA Calcium-bind 92.1 0.19 4E-06 31.8 3.1 27 235-263 10-37 (39)
102 cd07850 STKc_JNK Catalytic dom 92.0 0.12 2.6E-06 50.8 3.1 36 386-421 15-51 (353)
103 KOG0575 Polo-like serine/threo 92.0 0.12 2.5E-06 53.1 2.9 34 388-421 19-53 (592)
104 PRK04750 ubiB putative ubiquin 91.7 0.16 3.4E-06 52.9 3.5 35 387-422 120-155 (537)
105 KOG0198 MEKK and related serin 91.7 0.13 2.8E-06 49.6 2.8 34 389-422 19-53 (313)
106 KOG0591 NIMA (never in mitosis 91.6 0.054 1.2E-06 50.6 0.1 31 392-422 24-55 (375)
107 cd05098 PTKc_FGFR1 Catalytic d 91.6 0.11 2.5E-06 49.7 2.4 35 388-422 19-61 (307)
108 KOG1035 eIF-2alpha kinase GCN2 91.4 0.061 1.3E-06 59.4 0.3 38 385-422 477-515 (1351)
109 cd06633 STKc_TAO3 Catalytic do 91.1 0.18 3.9E-06 48.6 3.2 31 392-422 26-57 (313)
110 cd06634 STKc_TAO2 Catalytic do 91.0 0.12 2.6E-06 49.7 1.8 33 389-421 17-50 (308)
111 KOG0200 Fibroblast/platelet-de 90.8 0.14 3.1E-06 54.4 2.2 52 382-433 291-351 (609)
112 PHA03211 serine/threonine kina 90.5 0.2 4.4E-06 51.4 3.0 35 386-420 168-203 (461)
113 smart00181 EGF Epidermal growt 90.5 0.29 6.4E-06 30.1 2.7 25 235-262 7-31 (35)
114 PHA03209 serine/threonine kina 90.3 0.29 6.4E-06 48.2 4.0 36 386-421 65-101 (357)
115 cd00054 EGF_CA Calcium-binding 90.0 0.38 8.2E-06 29.9 3.0 27 235-263 10-36 (38)
116 KOG1166 Mitotic checkpoint ser 89.8 0.19 4.1E-06 55.3 2.2 41 381-421 692-732 (974)
117 PHA03212 serine/threonine kina 89.6 0.26 5.5E-06 49.4 2.9 35 387-421 92-127 (391)
118 PRK09605 bifunctional UGMP fam 89.3 0.27 5.9E-06 51.5 3.0 37 378-414 324-360 (535)
119 KOG1163 Casein kinase (serine/ 88.8 0.31 6.7E-06 44.7 2.5 44 378-422 7-51 (341)
120 KOG0984 Mitogen-activated prot 88.8 0.19 4.1E-06 45.1 1.1 50 382-431 41-92 (282)
121 KOG1024 Receptor-like protein 88.4 0.044 9.5E-07 53.4 -3.4 54 380-433 277-337 (563)
122 KOG1989 ARK protein kinase fam 88.3 0.31 6.6E-06 52.0 2.4 41 392-432 42-83 (738)
123 KOG0598 Ribosomal protein S6 k 87.9 0.27 5.9E-06 47.5 1.6 37 386-422 24-61 (357)
124 KOG1027 Serine/threonine prote 87.8 0.18 3.9E-06 53.7 0.4 32 388-420 510-542 (903)
125 PF12661 hEGF: Human growth fa 86.9 0.34 7.3E-06 23.2 0.8 10 253-262 2-11 (13)
126 KOG0032 Ca2+/calmodulin-depend 86.8 0.49 1.1E-05 47.2 2.8 34 389-422 37-71 (382)
127 KOG0667 Dual-specificity tyros 86.1 0.66 1.4E-05 48.1 3.4 31 392-422 191-222 (586)
128 KOG1217 Fibrillins and related 85.9 1.6 3.6E-05 44.3 6.2 67 236-304 280-353 (487)
129 KOG0660 Mitogen-activated prot 85.6 0.43 9.2E-06 46.1 1.6 34 387-420 22-56 (359)
130 PTZ00267 NIMA-related protein 85.5 0.52 1.1E-05 48.6 2.3 37 389-425 69-107 (478)
131 PTZ00382 Variant-specific surf 84.6 1.3 2.8E-05 34.8 3.6 9 293-301 41-49 (96)
132 PHA03390 pk1 serine/threonine- 83.8 1.1 2.4E-05 41.9 3.6 35 387-421 14-51 (267)
133 KOG2345 Serine/threonine prote 83.6 0.38 8.2E-06 44.4 0.3 41 389-429 23-64 (302)
134 KOG0585 Ca2+/calmodulin-depend 83.1 1.1 2.4E-05 45.0 3.3 40 383-422 93-133 (576)
135 KOG1167 Serine/threonine prote 83.0 0.44 9.4E-06 46.9 0.5 39 385-423 34-76 (418)
136 PF08693 SKG6: Transmembrane a 82.8 0.94 2E-05 29.1 1.8 17 313-329 10-26 (40)
137 KOG0696 Serine/threonine prote 82.6 0.76 1.6E-05 45.4 1.9 46 376-422 339-385 (683)
138 KOG0592 3-phosphoinositide-dep 82.3 0.66 1.4E-05 47.3 1.4 38 383-420 69-107 (604)
139 KOG0583 Serine/threonine prote 81.9 1.3 2.9E-05 44.0 3.4 36 386-421 16-52 (370)
140 COG0661 AarF Predicted unusual 81.7 0.96 2.1E-05 46.9 2.4 34 388-422 127-160 (517)
141 KOG0582 Ste20-like serine/thre 81.7 0.91 2E-05 45.3 2.1 33 390-422 29-62 (516)
142 KOG1164 Casein kinase (serine/ 81.5 1.3 2.7E-05 43.1 3.0 35 388-422 19-55 (322)
143 PHA03207 serine/threonine kina 81.3 1.4 3E-05 44.0 3.4 35 388-422 93-130 (392)
144 PRK10359 lipopolysaccharide co 80.9 1.1 2.5E-05 41.2 2.3 36 386-422 30-65 (232)
145 PF14670 FXa_inhibition: Coagu 80.5 0.88 1.9E-05 28.6 1.0 22 240-263 10-31 (36)
146 KOG1165 Casein kinase (serine/ 80.0 1.7 3.7E-05 41.9 3.2 32 388-419 29-61 (449)
147 PF14380 WAK_assoc: Wall-assoc 79.6 2.6 5.7E-05 32.8 3.7 44 215-258 47-93 (94)
148 KOG0615 Serine/threonine prote 78.6 2 4.3E-05 42.5 3.2 30 392-421 177-207 (475)
149 PF06247 Plasmod_Pvs28: Plasmo 78.1 0.51 1.1E-05 41.3 -0.8 63 239-303 10-83 (197)
150 PF07974 EGF_2: EGF-like domai 77.5 2.9 6.4E-05 25.5 2.7 25 235-263 7-31 (32)
151 KOG0579 Ste20-like serine/thre 76.5 0.49 1.1E-05 49.1 -1.5 41 393-433 38-79 (1187)
152 KOG0986 G protein-coupled rece 76.2 0.57 1.2E-05 46.8 -1.2 34 387-420 185-219 (591)
153 KOG0578 p21-activated serine/t 75.7 2.3 4.9E-05 43.6 2.9 37 389-425 275-312 (550)
154 KOG0596 Dual specificity; seri 74.0 1 2.2E-05 46.2 -0.1 42 392-433 366-409 (677)
155 KOG4258 Insulin/growth factor 73.1 1.8 4E-05 46.3 1.5 31 377-408 985-1015(1025)
156 PF15102 TMEM154: TMEM154 prot 71.4 2.2 4.8E-05 35.9 1.4 13 373-385 121-133 (146)
157 PHA02887 EGF-like protein; Pro 70.4 3.3 7.2E-05 33.2 2.1 28 277-304 92-122 (126)
158 KOG0666 Cyclin C-dependent kin 69.9 1.5 3.3E-05 41.9 0.1 31 392-422 29-64 (438)
159 PF04478 Mid2: Mid2 like cell 69.5 3.4 7.3E-05 35.1 2.0 14 314-327 50-63 (154)
160 KOG1345 Serine/threonine kinas 69.3 3.3 7.2E-05 38.9 2.1 58 375-433 10-70 (378)
161 KOG1235 Predicted unusual prot 68.2 5.6 0.00012 41.3 3.8 34 388-422 163-196 (538)
162 PHA03210 serine/threonine kina 68.1 1.5 3.1E-05 45.6 -0.5 24 386-409 147-170 (501)
163 KOG4279 Serine/threonine prote 67.7 3.8 8.2E-05 43.5 2.4 32 392-423 580-612 (1226)
164 KOG1151 Tousled-like protein k 67.3 1.2 2.7E-05 44.3 -1.1 30 393-422 469-499 (775)
165 KOG1225 Teneurin-1 and related 66.9 8.4 0.00018 39.8 4.7 14 291-304 328-341 (525)
166 KOG0587 Traf2- and Nck-interac 66.7 5.4 0.00012 43.3 3.3 46 378-423 10-56 (953)
167 COG2112 Predicted Ser/Thr prot 66.5 5.5 0.00012 35.2 2.9 31 392-423 27-57 (201)
168 PF00954 S_locus_glycop: S-loc 66.0 5.6 0.00012 31.9 2.7 12 289-300 97-108 (110)
169 KOG0610 Putative serine/threon 65.2 2.9 6.2E-05 41.4 1.0 31 392-422 82-113 (459)
170 KOG0994 Extracellular matrix g 62.9 7.5 0.00016 43.2 3.6 54 250-306 884-950 (1758)
171 KOG0616 cAMP-dependent protein 61.8 4.1 9E-05 38.7 1.3 34 389-422 46-80 (355)
172 KOG0611 Predicted serine/threo 61.8 3.3 7.1E-05 41.0 0.6 30 393-422 59-89 (668)
173 PF12946 EGF_MSP1_1: MSP1 EGF 61.0 3.9 8.5E-05 25.8 0.7 27 235-262 6-32 (37)
174 KOG0612 Rho-associated, coiled 61.0 2 4.4E-05 47.7 -1.0 42 380-421 68-110 (1317)
175 KOG0983 Mitogen-activated prot 60.6 10 0.00022 35.8 3.6 31 393-423 98-129 (391)
176 KOG0664 Nemo-like MAPK-related 60.0 4.4 9.6E-05 38.0 1.1 30 392-421 58-88 (449)
177 PF06247 Plasmod_Pvs28: Plasmo 59.9 1.5 3.2E-05 38.5 -1.8 67 235-304 94-165 (197)
178 PF14575 EphA2_TM: Ephrin type 59.7 0.99 2.1E-05 33.7 -2.6 16 375-390 55-70 (75)
179 smart00051 DSL delta serrate l 59.4 16 0.00034 26.2 3.7 47 250-303 16-63 (63)
180 PF12191 stn_TNFRSF12A: Tumour 58.3 2.5 5.5E-05 34.4 -0.6 11 255-265 36-46 (129)
181 KOG0576 Mitogen-activated prot 58.1 4.1 8.8E-05 42.9 0.6 36 387-422 15-51 (829)
182 KOG1225 Teneurin-1 and related 57.3 14 0.0003 38.2 4.3 45 252-304 266-310 (525)
183 PHA02887 EGF-like protein; Pro 57.3 11 0.00023 30.4 2.7 29 235-264 93-121 (126)
184 PF00954 S_locus_glycop: S-loc 56.7 16 0.00034 29.3 3.7 36 224-262 69-109 (110)
185 PF01034 Syndecan: Syndecan do 55.1 3.9 8.4E-05 29.2 -0.1 22 316-337 14-35 (64)
186 KOG0607 MAP kinase-interacting 54.3 6.7 0.00015 37.8 1.4 40 378-422 74-114 (463)
187 PHA03099 epidermal growth fact 53.2 11 0.00023 30.9 2.2 29 235-264 52-80 (139)
188 PF12955 DUF3844: Domain of un 51.5 1.8 3.9E-05 34.2 -2.4 31 271-301 6-44 (103)
189 KOG0586 Serine/threonine prote 51.2 12 0.00025 39.1 2.6 40 383-422 52-92 (596)
190 PF13095 FTA2: Kinetochore Sim 51.0 18 0.00038 32.7 3.4 32 387-419 37-69 (207)
191 KOG0671 LAMMER dual specificit 49.6 7.4 0.00016 38.2 0.9 47 375-423 79-126 (415)
192 PF09064 Tme5_EGF_like: Thromb 49.6 19 0.00041 22.2 2.3 24 278-302 7-30 (34)
193 PF08261 Carcinustatin: Carcin 48.8 8.2 0.00018 15.6 0.4 6 42-47 3-8 (8)
194 KOG0669 Cyclin T-dependent kin 46.0 1.3 2.7E-05 41.1 -4.6 28 392-419 22-50 (376)
195 KOG0690 Serine/threonine prote 45.0 11 0.00023 36.5 1.1 36 387-422 168-204 (516)
196 PF02009 Rifin_STEVOR: Rifin/s 44.4 3.9 8.5E-05 39.1 -1.9 13 337-349 279-291 (299)
197 KOG1836 Extracellular matrix g 42.8 29 0.00064 41.2 4.4 55 250-307 755-815 (1705)
198 PF06697 DUF1191: Protein of u 41.0 23 0.0005 33.4 2.7 22 309-330 208-229 (278)
199 COG0478 RIO-like serine/threon 40.2 31 0.00067 32.7 3.4 31 392-422 96-126 (304)
200 PTZ00214 high cysteine membran 36.2 45 0.00097 36.8 4.3 18 251-268 682-700 (800)
201 PRK01723 3-deoxy-D-manno-octul 35.2 44 0.00095 30.9 3.6 29 392-421 36-65 (239)
202 PF13908 Shisa: Wnt and FGF in 34.1 20 0.00044 31.5 1.2 18 315-332 79-96 (179)
203 cd01475 vWA_Matrilin VWA_Matri 34.0 31 0.00067 31.4 2.4 22 240-263 199-220 (224)
204 KOG0670 U4/U6-associated splic 33.5 32 0.00069 35.6 2.4 29 394-422 439-468 (752)
205 PTZ00046 rifin; Provisional 33.0 7 0.00015 38.1 -2.1 16 333-348 334-349 (358)
206 KOG0695 Serine/threonine prote 32.7 12 0.00027 36.1 -0.5 36 386-421 249-285 (593)
207 KOG1226 Integrin beta subunit 32.4 66 0.0014 34.6 4.6 23 252-274 567-589 (783)
208 KOG1152 Signal transduction se 31.4 43 0.00092 35.1 3.0 33 389-421 563-596 (772)
209 TIGR01477 RIFIN variant surfac 30.9 8 0.00017 37.6 -2.1 15 334-348 330-344 (353)
210 TIGR03147 cyt_nit_nrfF cytochr 28.8 32 0.00069 28.4 1.3 12 2-13 3-14 (126)
211 PF09919 DUF2149: Uncharacteri 28.4 49 0.0011 25.7 2.2 19 396-416 71-90 (92)
212 KOG3516 Neurexin IV [Signal tr 27.1 49 0.0011 37.3 2.8 37 267-304 542-581 (1306)
213 KOG0668 Casein kinase II, alph 27.0 15 0.00032 33.8 -0.9 32 392-423 43-75 (338)
214 KOG1033 eIF-2alpha kinase PEK/ 27.0 17 0.00037 37.2 -0.6 39 384-422 46-85 (516)
215 KOG0994 Extracellular matrix g 26.5 86 0.0019 35.5 4.4 34 235-268 776-811 (1758)
216 PF11403 Yeast_MT: Yeast metal 26.1 57 0.0012 19.9 1.7 11 291-301 23-33 (40)
217 KOG3482 Small nuclear ribonucl 25.0 64 0.0014 23.6 2.1 15 394-408 21-35 (79)
218 PF13956 Ibs_toxin: Toxin Ibs, 24.8 52 0.0011 17.2 1.2 12 3-14 5-16 (19)
219 COG1718 RIO1 Serine/threonine 24.5 82 0.0018 29.5 3.3 46 377-422 35-83 (268)
220 PF12273 RCR: Chitin synthesis 22.7 16 0.00035 30.3 -1.4 6 338-343 24-29 (130)
221 KOG0584 Serine/threonine prote 22.7 30 0.00065 36.3 0.2 24 392-415 45-69 (632)
222 PHA02871 hypothetical protein; 20.2 72 0.0016 26.6 1.9 17 31-47 25-42 (222)
No 1
>PF13947 GUB_WAK_bind: Wall-associated receptor kinase galacturonan-binding
Probab=99.95 E-value=7.1e-28 Score=195.54 Aligned_cols=104 Identities=38% Similarity=0.799 Sum_probs=88.2
Q ss_pred CCCCcCCCCCeecccccCCCCCcccCCCCceeecCCCCCCCCCCc--cccEEEEEeecCCeeEEEcccccccccCccccc
Q 035932 29 KPGCEEKCGDVTVPYPFGIGNRKCAMNGDFFLFCDRSASPPQPKF--EDVVVLNISITDGSIIARIPTAQRCYNGFGNVL 106 (433)
Q Consensus 29 ~~~C~~~CG~v~I~yPFgi~~~~C~~~~~F~l~C~~~~~~~~l~~--~~~~v~~I~~~~~~~~v~~~~~~~c~~~~~~~~ 106 (433)
+++||++||||+|||||||+++ |+++|+|+|+|++++++|+|.+ ++|+|++|+|++++|+|.+++.+.|+.......
T Consensus 1 ~~~C~~~CGnv~IpYPFgi~~~-C~~~~~F~L~C~~~~~~~~l~l~~~~~~V~~I~~~~~~i~v~~~~~~~~~~~~~~~~ 79 (106)
T PF13947_consen 1 KPGCPSSCGNVSIPYPFGIGPG-CGRDPGFELTCNNNTSPPKLLLSSGNYEVLSISYENGTIRVSDPISSNCYSSSSSNS 79 (106)
T ss_pred CCCCCCccCCEeecCCCccCCC-CCCCCCcEEECCCCCCCceeEecCCcEEEEEEecCCCEEEEEeccccceecCCCCcc
Confidence 4789999999999999999999 9998999999999987888886 789999999999999999999988887622211
Q ss_pred ccceeeeccCCCCeEEeCCCCeEEEEccce
Q 035932 107 NSTDIKVDLVLRPFRLSGTRNKLTAFGCDT 136 (433)
Q Consensus 107 ~~~~~~~~l~~~~f~~s~~~n~~~~~gC~~ 136 (433)
... .+++.. ||.+|+++|.|+++||++
T Consensus 80 ~~~--~~~~~~-~~~~s~~~N~~~~~GC~t 106 (106)
T PF13947_consen 80 SNS--NLSLNG-PFFFSSSSNKFTVVGCNT 106 (106)
T ss_pred ccc--EEeecC-CceEccCCcEEEEECCCC
Confidence 111 245555 899999999999999985
No 2
>PF08488 WAK: Wall-associated kinase; InterPro: IPR013695 This domain is found together with the eukaryotic protein kinase domain IPR000719 from INTERPRO in plant wall-associated kinases (WAKs) and related proteins. WAKs are serine-threonine kinases which might be involved in signalling to the cytoplasm and are required for cell expansion []. ; GO: 0004674 protein serine/threonine kinase activity, 0016021 integral to membrane
Probab=99.34 E-value=2e-12 Score=102.99 Aligned_cols=65 Identities=32% Similarity=0.554 Sum_probs=52.3
Q ss_pred CCCCCCccccccccccc-ccceeeeee-------eeccceEEEEecc-cccCCCc---cccCCCCcceEEeeeecCC
Q 035932 169 ENSCSGFGCCQTPLRKI-LNKTKTLTE-------EFITCDYAVLADE-SFDLSGL---HFSDKSSSNVTVEWMIKDE 233 (433)
Q Consensus 169 ~~~C~g~gCC~~~~~~~-~~~~~~~~~-------~~~~c~~a~~~~~-~~~~~~~---~~~~~~~~~~~l~w~~~~~ 233 (433)
+++|+|++|||++||.+ ++.|.+.+. ...+|++|||+++ ||.++.+ .+.+.+++||+|+|.+...
T Consensus 1 n~~CsG~~CCQt~iP~~~~qv~~~~i~~~~~~~~~~~~Ck~AFL~d~~~~~~n~t~p~~~~~~~y~pv~L~W~i~t~ 77 (103)
T PF08488_consen 1 NSSCSGIGCCQTSIPSGLLQVFNVTIESTDGNNQTSNGCKVAFLVDEDWFSSNITDPEDFHAMGYVPVVLDWFIDTS 77 (103)
T ss_pred CCccCCcceeccCCCCCCceEEEEEeEecCCCcccCCCceEEEEeccccccccCCChHHhccCCeeEEEEEEEEecC
Confidence 36899999999999996 567777661 2468999999999 9876654 4566888999999999643
No 3
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=3.8e-11 Score=118.31 Aligned_cols=61 Identities=43% Similarity=0.748 Sum_probs=53.8
Q ss_pred cceecChhhHhhhccCccCCcccccCCCceEEEEEeCCCcEEEEEecCCcCccchhhhccC
Q 035932 373 KTKLFTSKDLEKATDNYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSVHESNVEQFINE 433 (433)
Q Consensus 373 ~~~~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~~~~~~eF~~E 433 (433)
..+.|+++||++||++|+++++||+||||+||||.|+||+.||||+++....++.+||.+|
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~E 121 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNE 121 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHH
Confidence 5677999999999999999999999999999999999999999999987654425668876
No 4
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=98.75 E-value=1.1e-08 Score=105.73 Aligned_cols=42 Identities=31% Similarity=0.552 Sum_probs=32.8
Q ss_pred CcccccCCCceEEEEEe-CCC----cEEEEEecCCc-CccchhhhccC
Q 035932 392 SRILGQGGQGTVFKGML-TDG----RIVAVKKSKSV-HESNVEQFINE 433 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L-~dg----~~VAVK~l~~~-~~~~~~eF~~E 433 (433)
..+||+|+||+||||.| ++| .+||||.+.+. ..+..+||+.|
T Consensus 701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~Lde 748 (1177)
T KOG1025|consen 701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDE 748 (1177)
T ss_pred hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHH
Confidence 47999999999999999 554 48999999766 34455667654
No 5
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.54 E-value=4.6e-08 Score=108.50 Aligned_cols=65 Identities=34% Similarity=0.746 Sum_probs=55.3
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCCCCCee-cccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCcc
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPYLGCHD-IDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~d-i~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~~ 304 (433)
.|..+++|....+ ||.|+|+.||+|..|. .+ |+|| ..++| +|.|.|+.|+|.|.|.+|+.|..|.
T Consensus 3910 PC~~GgtCip~~n--~f~CnC~~gyTG~~Ce--~~Gi~eC-s~n~C~~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3910 PCLTGGTCIPFYN--GFLCNCPNGYTGKRCE--ARGISEC-SKNVCGTGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred CCCCCCEEEecCC--CeeEeCCCCccCceee--ccccccc-ccccccCCceeeccCCceEeccChhHhcccCc
Confidence 3888899987666 8999999999999876 22 8999 67889 5899999999999999999998764
No 6
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.41 E-value=2.7e-07 Score=90.21 Aligned_cols=38 Identities=39% Similarity=0.585 Sum_probs=30.2
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCcCccchhhhccC
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSVHESNVEQFINE 433 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~~~~~~eF~~E 433 (433)
.++||+|+||.||||.| +++.||||++... +...|++|
T Consensus 215 ~eli~~Grfg~V~KaqL-~~~~VAVKifp~~---~kqs~~~E 252 (534)
T KOG3653|consen 215 LELIGRGRFGCVWKAQL-DNRLVAVKIFPEQ---EKQSFQNE 252 (534)
T ss_pred HHHhhcCccceeehhhc-cCceeEEEecCHH---HHHHHHhH
Confidence 47899999999999999 5599999999653 33445554
No 7
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.22 E-value=1.4e-07 Score=97.24 Aligned_cols=59 Identities=27% Similarity=0.409 Sum_probs=46.8
Q ss_pred eecChhhHhhhccCccC---------CcccccCCCceEEEEEeC----CCcEEEEEecCCc-CccchhhhccC
Q 035932 375 KLFTSKDLEKATDNYNV---------SRILGQGGQGTVFKGMLT----DGRIVAVKKSKSV-HESNVEQFINE 433 (433)
Q Consensus 375 ~~f~~~eL~~aT~~F~~---------~~~IG~G~fG~VYKG~L~----dg~~VAVK~l~~~-~~~~~~eF~~E 433 (433)
..++|||--+|...|.. +++||.|.||.||+|.|+ ....||||.||.. .++++.+|+.|
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~E 680 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSE 680 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhh
Confidence 44788887777666633 388999999999999993 2458999999998 56778899877
No 8
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=98.01 E-value=5.3e-06 Score=92.98 Aligned_cols=66 Identities=30% Similarity=0.756 Sum_probs=58.9
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCCCCCeecccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCcc
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPYLGCHDIDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~~ 304 (433)
.|.+++.|..... .||.|+|+.-|.|+.|. ++++.| ..+|| +|+|.-..+.|.|.||.||+|+.|+
T Consensus 3871 pCqhgG~C~~~~~-ggy~CkCpsqysG~~CE--i~~epC-~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce 3938 (4289)
T KOG1219|consen 3871 PCQHGGTCISQPK-GGYKCKCPSQYSGNHCE--IDLEPC-ASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCE 3938 (4289)
T ss_pred cccCCCEecCCCC-CceEEeCcccccCcccc--cccccc-cCCCCCCCCEEEecCCCeeEeCCCCccCceee
Confidence 4888899976655 49999999999999987 788999 78899 7999999999999999999999886
No 9
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=97.92 E-value=1.1e-05 Score=83.24 Aligned_cols=67 Identities=40% Similarity=0.962 Sum_probs=54.6
Q ss_pred CCCCCCceecC-CCCcceEEecCCCCcCCCCCCCeecccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCc
Q 035932 235 SCGDNTNLTYS-ENGQGYRCVCQPGYKGNPYLGCHDIDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGT 303 (433)
Q Consensus 235 ~C~~~~~C~~~-~~~~gy~C~C~~g~~g~~~~~C~di~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~ 303 (433)
.|.-++.|+.. .++..|.|.|.+||.|.... |.|.||| .++.| .+.|.|++|+|.|.|.+||.|+.-
T Consensus 792 ~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~~-c~dvDeC-~psrChp~A~CyntpgsfsC~C~pGy~GDGf 861 (1289)
T KOG1214|consen 792 TCAIAGQARCVHHGGSTYSCACLPGFSGDGHQ-CTDVDEC-SPSRCHPAATCYNTPGSFSCRCQPGYYGDGF 861 (1289)
T ss_pred ccCcCCceEEEecCCceEEEeecCCccCCccc-ccccccc-CccccCCCceEecCCCcceeecccCccCCCc
Confidence 56644444433 34557999999999998876 8899999 58889 489999999999999999999854
No 10
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.78 E-value=7.3e-06 Score=54.09 Aligned_cols=31 Identities=58% Similarity=1.193 Sum_probs=27.7
Q ss_pred ecccCc-CCCCCC--CccCCCCCCeeEeCCCCCC
Q 035932 269 DIDECN-EGYPCE--GTCKNTPGSYACQCPIGMH 299 (433)
Q Consensus 269 di~eC~-~~~~C~--~~C~n~~gs~~C~C~~g~~ 299 (433)
|||||. ....|. +.|.|+.|+|.|.|++||.
T Consensus 1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence 799998 456884 8999999999999999998
No 11
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.68 E-value=1.3e-05 Score=81.04 Aligned_cols=41 Identities=32% Similarity=0.452 Sum_probs=33.5
Q ss_pred CCcccccCCCceEEEEEeCCCcEEEEEecCCc--CccchhhhccC
Q 035932 391 VSRILGQGGQGTVFKGMLTDGRIVAVKKSKSV--HESNVEQFINE 433 (433)
Q Consensus 391 ~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~--~~~~~~eF~~E 433 (433)
....||+|.||+||||.|.. .||||+|+.. +..+.+.|.+|
T Consensus 396 l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnE 438 (678)
T KOG0193|consen 396 LGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNE 438 (678)
T ss_pred ccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHH
Confidence 35789999999999999964 3999999765 44567888876
No 12
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.63 E-value=3.6e-05 Score=79.21 Aligned_cols=48 Identities=23% Similarity=0.487 Sum_probs=37.5
Q ss_pred hccCccCCcccccCCCceEEEEEe-----------------CCCcEEEEEecCCcCccchhhhcc
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGML-----------------TDGRIVAVKKSKSVHESNVEQFIN 432 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L-----------------~dg~~VAVK~l~~~~~~~~~eF~~ 432 (433)
..++|...++||+|+||+||||.+ .+++.||||+++.......++|++
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~ 207 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLK 207 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHh
Confidence 467898899999999999999975 345789999997665544555554
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.51 E-value=8.1e-05 Score=83.49 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=35.9
Q ss_pred ecChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcC
Q 035932 376 LFTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVH 423 (433)
Q Consensus 376 ~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~ 423 (433)
.++++++.. .|.+.++||+|+||+||||+. .+|..||||+++...
T Consensus 682 ~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 727 (968)
T PLN00113 682 SITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVN 727 (968)
T ss_pred hhhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCc
Confidence 355666654 466788999999999999997 678999999997543
No 14
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.49 E-value=8.8e-05 Score=42.00 Aligned_cols=23 Identities=52% Similarity=1.151 Sum_probs=19.9
Q ss_pred ceEEecCCCCcCCCCC-CCeeccc
Q 035932 250 GYRCVCQPGYKGNPYL-GCHDIDE 272 (433)
Q Consensus 250 gy~C~C~~g~~g~~~~-~C~di~e 272 (433)
+|.|.|++||+.++.. .|+||||
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 5899999999987765 8999987
No 15
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=2.7e-05 Score=81.69 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=36.5
Q ss_pred ccCCcccccCCCceEEEEEeCC------CcEEEEEecCCcCcc-chhhhccC
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD------GRIVAVKKSKSVHES-NVEQFINE 433 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d------g~~VAVK~l~~~~~~-~~~eF~~E 433 (433)
....+.||+|.||.||+|+... .+.||||.||+.+.. ...||.+|
T Consensus 488 i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~RE 539 (774)
T KOG1026|consen 488 IVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRRE 539 (774)
T ss_pred eeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHH
Confidence 3335789999999999999833 458999999988655 77899887
No 16
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.25 E-value=0.00011 Score=79.76 Aligned_cols=45 Identities=40% Similarity=0.702 Sum_probs=36.5
Q ss_pred ccCCcccccCCCceEEEEEeCC--Cc----EEEEEecCCc-CccchhhhccC
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD--GR----IVAVKKSKSV-HESNVEQFINE 433 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d--g~----~VAVK~l~~~-~~~~~~eF~~E 433 (433)
....+.||+|.||.||+|++.+ |. .||||+|+.. +.++.++|++|
T Consensus 694 v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~E 745 (1025)
T KOG1095|consen 694 VTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKE 745 (1025)
T ss_pred eEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHH
Confidence 3446889999999999999954 43 4999999776 56778899887
No 17
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00032 Score=63.87 Aligned_cols=46 Identities=39% Similarity=0.858 Sum_probs=35.6
Q ss_pred cCCCCcCCCCCCCeecccCc-CCCCC--CCccCCCCCCeeEeCCCCCCCC
Q 035932 255 CQPGYKGNPYLGCHDIDECN-EGYPC--EGTCKNTPGSYACQCPIGMHGD 301 (433)
Q Consensus 255 C~~g~~g~~~~~C~di~eC~-~~~~C--~~~C~n~~gs~~C~C~~g~~g~ 301 (433)
|..|+... -.+|.|||||. ++.|| ...|.|+.|||.|.+.+||.+.
T Consensus 222 CkkGW~ld-e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 222 CKKGWKLD-EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG 270 (350)
T ss_pred hcccceec-ccccccHHHHhcCCCCCChhheeecCCCceEecccccccCC
Confidence 44444333 12688999998 67888 4799999999999999998873
No 18
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=97.15 E-value=0.00029 Score=76.84 Aligned_cols=53 Identities=38% Similarity=0.998 Sum_probs=47.4
Q ss_pred cceEEecCCCCcCCCCCCCeecccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCcc
Q 035932 249 QGYRCVCQPGYKGNPYLGCHDIDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 249 ~gy~C~C~~g~~g~~~~~C~di~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~~ 304 (433)
.|.+|.|++||+|.-+. ..||+| ...|| ++.|....|.|+|.|.+||.|..|+
T Consensus 1220 nglrCrCPpGFTgd~Ce--TeiDlC-Ys~pC~nng~C~srEggYtCeCrpg~tGehCE 1274 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDYCE--TEIDLC-YSGPCGNNGRCRSREGGYTCECRPGFTGEHCE 1274 (2531)
T ss_pred CceeEeCCCCCCccccc--chhHhh-hcCCCCCCCceEEecCceeEEecCCcccccee
Confidence 38999999999999654 679999 67889 5999999999999999999999886
No 19
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.05 E-value=0.00068 Score=43.49 Aligned_cols=35 Identities=60% Similarity=1.268 Sum_probs=27.7
Q ss_pred ecccCcCCCCC--CCccCCCCCCeeEeCCCCCC-CCCc
Q 035932 269 DIDECNEGYPC--EGTCKNTPGSYACQCPIGMH-GDGT 303 (433)
Q Consensus 269 di~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~-g~~~ 303 (433)
|+|||....+| ++.|.++.++|.|.|+.||. |..+
T Consensus 1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C 38 (39)
T smart00179 1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38 (39)
T ss_pred CcccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcC
Confidence 46888532688 35999999999999999998 6543
No 20
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.61 E-value=0.00049 Score=67.46 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=26.5
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.+.||+|.||.|++|.| .|.-||||.+...
T Consensus 216 ~e~IGkGRyGEVwrG~w-rGe~VAVKiF~sr 245 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRW-RGEDVAVKIFSSR 245 (513)
T ss_pred EEEecCccccceeeccc-cCCceEEEEeccc
Confidence 47899999999999999 6788999999554
No 21
>PHA02988 hypothetical protein; Provisional
Probab=96.52 E-value=0.0024 Score=60.86 Aligned_cols=47 Identities=28% Similarity=0.536 Sum_probs=37.7
Q ss_pred CccceecChhhHhhhccCccCCcccccCCCceEEEEEeCCCcEEEEEecCCcC
Q 035932 371 IEKTKLFTSKDLEKATDNYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSVH 423 (433)
Q Consensus 371 ~~~~~~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~ 423 (433)
...++.++.++|++.+ ...||+|++|.||||.+ +|+.||||+++...
T Consensus 9 ~~~~~~i~~~~i~~~~-----~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~ 55 (283)
T PHA02988 9 INDIKCIESDDIDKYT-----SVLIKENDQNSIYKGIF-NNKEVIIRTFKKFH 55 (283)
T ss_pred cCcceecCHHHcCCCC-----CeEEeeCCceEEEEEEE-CCEEEEEEeccccc
Confidence 4456667888885543 46899999999999999 78999999997653
No 22
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.46 E-value=0.0012 Score=66.69 Aligned_cols=43 Identities=40% Similarity=0.706 Sum_probs=33.5
Q ss_pred CCcccccCCCceEEEEEeCC--C--cE-EEEEecCCc---CccchhhhccC
Q 035932 391 VSRILGQGGQGTVFKGMLTD--G--RI-VAVKKSKSV---HESNVEQFINE 433 (433)
Q Consensus 391 ~~~~IG~G~fG~VYKG~L~d--g--~~-VAVK~l~~~---~~~~~~eF~~E 433 (433)
..+.||+|.||.||+|+|.. + .. ||||..+.. ...+.+||++|
T Consensus 161 l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~E 211 (474)
T KOG0194|consen 161 LGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKE 211 (474)
T ss_pred ccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHH
Confidence 34799999999999999944 3 23 899999852 45667888876
No 23
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.0023 Score=61.43 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=28.6
Q ss_pred ccCCcccccCCCceEEEEEeCC-CcEEEEEecCCcC
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSVH 423 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~ 423 (433)
+...++||.|.||.||+|++.. +..|||||.....
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~ 61 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDK 61 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCC
Confidence 3446899999999999999944 6899999985543
No 24
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=96.36 E-value=0.0022 Score=63.36 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=31.4
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCcCccc--hhhhccC
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSVHESN--VEQFINE 433 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~~~~--~~eF~~E 433 (433)
.+.||+|+||+||||.+.....||||++....... .++|.+|
T Consensus 46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E 89 (362)
T KOG0192|consen 46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRRE 89 (362)
T ss_pred hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHH
Confidence 45699999999999999655559999997653222 4567655
No 25
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.32 E-value=0.0027 Score=62.70 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=29.5
Q ss_pred ccCccCCcccccCCCceEEEEEeC--CCcEEEEEecC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLT--DGRIVAVKKSK 420 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~--dg~~VAVK~l~ 420 (433)
.+.|...++||+|+||+||++... +++.||||++.
T Consensus 17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~ 53 (365)
T PRK09188 17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRV 53 (365)
T ss_pred cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEec
Confidence 455777889999999999999874 57889999875
No 26
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=96.27 E-value=0.0047 Score=64.08 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=34.1
Q ss_pred cccccCCCceEEEEEeC--CCc--EEEEEecCCcCcc-chhhhccC
Q 035932 393 RILGQGGQGTVFKGMLT--DGR--IVAVKKSKSVHES-NVEQFINE 433 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L~--dg~--~VAVK~l~~~~~~-~~~eF~~E 433 (433)
++||+|.||.|.+|.|. +|. .||||.|+..... ..++|++|
T Consensus 116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrE 161 (1039)
T KOG0199|consen 116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLRE 161 (1039)
T ss_pred HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHH
Confidence 68999999999999993 354 6899999987654 67889876
No 27
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=96.24 E-value=0.0053 Score=38.75 Aligned_cols=35 Identities=60% Similarity=1.254 Sum_probs=27.7
Q ss_pred ecccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCc
Q 035932 269 DIDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGT 303 (433)
Q Consensus 269 di~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~ 303 (433)
++++|....+| ++.|.+..+.|.|.|+.||.|..+
T Consensus 1 ~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~C 37 (38)
T cd00054 1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37 (38)
T ss_pred CcccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCcC
Confidence 35778432678 578999999999999999988654
No 28
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.03 E-value=0.0051 Score=64.67 Aligned_cols=38 Identities=26% Similarity=0.495 Sum_probs=32.2
Q ss_pred hccCccCCcccccCCCceEEEEEeCC-----CcEEEEEecCCc
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGMLTD-----GRIVAVKKSKSV 422 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L~d-----g~~VAVK~l~~~ 422 (433)
..++|...++||+|+||+||||++.+ +..||||+++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~ 172 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEY 172 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEeccc
Confidence 56778888999999999999999854 689999998643
No 29
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=96.02 E-value=0.0084 Score=62.71 Aligned_cols=66 Identities=32% Similarity=0.731 Sum_probs=54.3
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCCCCCeecccCc-CCCCC--CCccCCCCCCeeEeCCCCCCCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPYLGCHDIDECN-EGYPC--EGTCKNTPGSYACQCPIGMHGDG 302 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di~eC~-~~~~C--~~~C~n~~gs~~C~C~~g~~g~~ 302 (433)
.|..++.|...++ ..|.|.|..||+|.+-. |.|++||. ....| +..|.|.+++|+|.|..||.-..
T Consensus 701 ~cdt~a~C~pg~~-~~~tcecs~g~~gdgr~-c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~d 769 (1289)
T KOG1214|consen 701 MCDTTARCHPGTG-VDYTCECSSGYQGDGRN-CVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFAD 769 (1289)
T ss_pred ccCCCccccCCCC-cceEEEEeeccCCCCCC-CCChhhhccCCCCCCCCceeecCCCceeEEEeecceecc
Confidence 4777788865443 47999999999999877 99999997 45678 48999999999999999976443
No 30
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=96.00 E-value=0.0043 Score=59.05 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=41.4
Q ss_pred ecChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 376 LFTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 376 ~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
++++++|.+++++|...+.||+|+||.||++.. .++..+|||.++..
T Consensus 11 ~~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~ 58 (291)
T cd06639 11 MLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPI 58 (291)
T ss_pred hhhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEeccc
Confidence 477889999999999999999999999999998 45889999998653
No 31
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=96.00 E-value=0.0041 Score=61.94 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=27.9
Q ss_pred CccCCcccccCCCceEEEEEe------CCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGML------TDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L------~dg~~VAVK~l~~~ 422 (433)
+|...+.||+|+||+||+++. ..+..||||+++..
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~ 76 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPS 76 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCC
Confidence 455578999999999999974 23568999999754
No 32
>PTZ00284 protein kinase; Provisional
Probab=95.99 E-value=0.0035 Score=64.42 Aligned_cols=44 Identities=23% Similarity=0.401 Sum_probs=36.1
Q ss_pred ChhhHhhhccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 378 TSKDLEKATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 378 ~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
..+++...+++|...++||+|+||+||++... .+..||||+++.
T Consensus 120 ~~~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~ 164 (467)
T PTZ00284 120 LGEDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN 164 (467)
T ss_pred cCCccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence 34556667788888899999999999999874 478999999964
No 33
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=95.85 E-value=0.0021 Score=51.84 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=24.2
Q ss_pred cccCc--CCCCC-CCccCCC--CCCeeEeCCCCCCCCCcc
Q 035932 270 IDECN--EGYPC-EGTCKNT--PGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 270 i~eC~--~~~~C-~~~C~n~--~gs~~C~C~~g~~g~~~~ 304 (433)
+.+|. ..+-| +|.|... ...+.|.|+.||.|..|+
T Consensus 42 i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYtGeRCE 81 (139)
T PHA03099 42 IRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRCQ 81 (139)
T ss_pred cccCChhhCCEeECCEEEeeccCCCceeECCCCccccccc
Confidence 44554 23445 5677544 377899999999999886
No 34
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=95.83 E-value=0.011 Score=53.19 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=28.6
Q ss_pred ccCCcccccCCCceEEEEEeCCCcEEEEEecCC
Q 035932 389 YNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKS 421 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~ 421 (433)
+...+.||+|+||.||++..++|+.||||+.+.
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~ 49 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRL 49 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEec
Confidence 444688999999999999998899999998654
No 35
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=95.78 E-value=0.0066 Score=66.80 Aligned_cols=58 Identities=38% Similarity=0.948 Sum_probs=45.3
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCCCCCeec--ccCcCCCCC--CCccCCC-CCCeeEeCCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPYLGCHDI--DECNEGYPC--EGTCKNT-PGSYACQCPIG 297 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di--~eC~~~~~C--~~~C~n~-~gs~~C~C~~g 297 (433)
.|.+|+.|..-.+ ||.|.|.+||.|..+. .+. --| .+.-| +++|.|. .|.|.|.||.|
T Consensus 1246 pC~nng~C~srEg--gYtCeCrpg~tGehCE--vs~~agrC-vpGvC~nggtC~~~~nggf~c~Cp~g 1308 (2531)
T KOG4289|consen 1246 PCGNNGRCRSREG--GYTCECRPGFTGEHCE--VSARAGRC-VPGVCKNGGTCVNLLNGGFCCHCPYG 1308 (2531)
T ss_pred CCCCCCceEEecC--ceeEEecCCcccccee--eecccCcc-ccceecCCCEEeecCCCceeccCCCc
Confidence 4999999988777 9999999999998865 111 124 45556 5788876 48999999998
No 36
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.74 E-value=0.0067 Score=57.48 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=38.8
Q ss_pred cChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 377 FTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 377 f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
+.++++..++++|...+.||+|+||.||++.. ..+..+|||.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~ 53 (286)
T cd06638 8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDP 53 (286)
T ss_pred EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecc
Confidence 55677888999998889999999999999988 4578999999864
No 37
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.73 E-value=0.0054 Score=63.54 Aligned_cols=43 Identities=33% Similarity=0.470 Sum_probs=34.3
Q ss_pred hhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 380 KDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 380 ~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
+++....++|...++||+|+||+||++.. .+|+.||||+++..
T Consensus 25 ~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~ 68 (496)
T PTZ00283 25 ATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDME 68 (496)
T ss_pred ccccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecc
Confidence 34445556777788999999999999986 56899999998543
No 38
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=95.70 E-value=0.0058 Score=61.52 Aligned_cols=36 Identities=39% Similarity=0.435 Sum_probs=28.5
Q ss_pred cCccCCcccccCCCceEEEEEeCC------CcEEEEEecCCc
Q 035932 387 DNYNVSRILGQGGQGTVFKGMLTD------GRIVAVKKSKSV 422 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L~d------g~~VAVK~l~~~ 422 (433)
+++...+.||+|+||.||++++.+ +..||||+++..
T Consensus 37 ~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~ 78 (401)
T cd05107 37 DNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKST 78 (401)
T ss_pred HHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCC
Confidence 344446899999999999999742 358999999764
No 39
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.60 E-value=0.0043 Score=63.43 Aligned_cols=42 Identities=36% Similarity=0.547 Sum_probs=35.6
Q ss_pred CCcccccCCCceEEEEEeCC-CcEEEEEecCCcCccchhhhccC
Q 035932 391 VSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSVHESNVEQFINE 433 (433)
Q Consensus 391 ~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~~~~~~eF~~E 433 (433)
-.+.||-|-||.||.|+|.. ...||||.||+. ..+.+||+.|
T Consensus 271 MkhKLGGGQYGeVYeGvWKkyslTvAVKtLKED-tMeveEFLkE 313 (1157)
T KOG4278|consen 271 MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKE 313 (1157)
T ss_pred eeeccCCCcccceeeeeeeccceeeehhhhhhc-chhHHHHHHH
Confidence 36899999999999999955 679999999984 4567889876
No 40
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=95.56 E-value=0.005 Score=56.88 Aligned_cols=54 Identities=30% Similarity=0.444 Sum_probs=39.3
Q ss_pred cceecChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCc-cchhhhccC
Q 035932 373 KTKLFTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHE-SNVEQFINE 433 (433)
Q Consensus 373 ~~~~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~-~~~~eF~~E 433 (433)
....|+.++|+. ...||.|.||+|+|-.- +.|...|||+++..+. .+.++|+.|
T Consensus 57 ~~~~F~~~~Lqd-------lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e 112 (361)
T KOG1006|consen 57 HLHTFTSDNLQD-------LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLME 112 (361)
T ss_pred cccccccchHHH-------HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHH
Confidence 344566666654 35799999999999776 5689999999987754 445555543
No 41
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=95.54 E-value=0.013 Score=59.69 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=35.8
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCcCcc-chhhhccC
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSVHES-NVEQFINE 433 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~~~-~~~eF~~E 433 (433)
.+.||+|-||.|-.-++..+..||||+|+..+.. ..++|.+|
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kE 585 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKE 585 (807)
T ss_pred hhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHH
Confidence 4789999999999999987899999999988554 45888776
No 42
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=95.48 E-value=0.0096 Score=58.48 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=38.7
Q ss_pred cChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 377 FTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 377 f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
...++|..++++|...+.||+|+||.||++.. .++..||||+++..
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~ 53 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRP 53 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCc
Confidence 34567778889998889999999999999986 56889999999653
No 43
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=95.43 E-value=0.011 Score=59.39 Aligned_cols=48 Identities=33% Similarity=0.419 Sum_probs=32.6
Q ss_pred ccCccCCcccccCCCceEEEEEeCC------CcEEEEEecCCcCc-cchhhhccC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLTD------GRIVAVKKSKSVHE-SNVEQFINE 433 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~d------g~~VAVK~l~~~~~-~~~~eF~~E 433 (433)
.+.|...++||+|+||+||+|+... +..||||+++.... ...+.|++|
T Consensus 36 ~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E 90 (400)
T cd05105 36 RDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSE 90 (400)
T ss_pred ccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHH
Confidence 3445556899999999999998621 34699999975432 233445544
No 44
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.31 E-value=0.0074 Score=37.03 Aligned_cols=27 Identities=37% Similarity=0.933 Sum_probs=23.3
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGN 262 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~ 262 (433)
.|.++++|++.. ..+|.|.|++||.|.
T Consensus 5 ~C~n~g~C~~~~-~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 5 PCQNGGTCIDLP-GGGYTCECPPGYTGK 31 (32)
T ss_dssp SSTTTEEEEEES-TSEEEEEEBTTEEST
T ss_pred cCCCCeEEEeCC-CCCEEeECCCCCccC
Confidence 589999999887 348999999999985
No 45
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.30 E-value=0.011 Score=37.31 Aligned_cols=28 Identities=36% Similarity=0.992 Sum_probs=22.4
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPY 264 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~ 264 (433)
.|..++.|.+..+ .|.|.|.+||.|+.+
T Consensus 7 ~C~~nA~C~~~~~--~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 7 GCHPNATCTNTGG--SYTCTCKPGYEGDGF 34 (36)
T ss_dssp GS-TTCEEEE-TT--SEEEEE-CEEECCST
T ss_pred CCCCCcEeecCCC--CEEeECCCCCccCCc
Confidence 5889999998887 899999999999875
No 46
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=95.25 E-value=0.011 Score=58.99 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=27.7
Q ss_pred CccCCcccccCCCceEEEEEe------CCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGML------TDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L------~dg~~VAVK~l~~~ 422 (433)
+|...++||+|+||.||+++. .++..||||+++..
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~ 79 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKAS 79 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCC
Confidence 455578999999999999874 23458999999754
No 47
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=95.22 E-value=0.013 Score=58.77 Aligned_cols=52 Identities=31% Similarity=0.355 Sum_probs=39.4
Q ss_pred ceecChhhHhhhccCccCCcccccCCCceEEEEEeCCCcEEEEEecCCcCccchhhhccC
Q 035932 374 TKLFTSKDLEKATDNYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSVHESNVEQFINE 433 (433)
Q Consensus 374 ~~~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~~~~~~eF~~E 433 (433)
...+..++|.. .+.||+|-||.|+.|.+.....||||.++..+. ..++|++|
T Consensus 200 ~wei~r~~l~l-------~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m-~~~~f~~E 251 (468)
T KOG0197|consen 200 PWEIPREELKL-------IRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSM-SPEAFLRE 251 (468)
T ss_pred CeeecHHHHHH-------HHHhcCCccceEEEEEEcCCCcccceEEecccc-ChhHHHHH
Confidence 34466666654 478999999999999997777999999988643 33666654
No 48
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=95.22 E-value=0.012 Score=58.05 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=26.7
Q ss_pred CcccccCCCceEEEEEeC-CCcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGMLT-DGRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~ 422 (433)
.+.||+|+||+||+++.. +|..||||++...
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 110 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGN 110 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEEEecC
Confidence 478999999999999974 6899999998654
No 49
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=95.12 E-value=0.011 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=28.7
Q ss_pred CccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
+|..-|.|++|.||.||||.- ..+++||.||++-.
T Consensus 77 efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kme 112 (419)
T KOG0663|consen 77 EFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKME 112 (419)
T ss_pred HHHHHhhcccCcceeEEEeccCCcceeEEeeecccc
Confidence 344458999999999999986 44789999999754
No 50
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=95.03 E-value=0.0059 Score=37.47 Aligned_cols=26 Identities=50% Similarity=1.313 Sum_probs=22.3
Q ss_pred CCCC--CCccCCCC-CCeeEeCCCCCCCC
Q 035932 276 GYPC--EGTCKNTP-GSYACQCPIGMHGD 301 (433)
Q Consensus 276 ~~~C--~~~C~n~~-gs~~C~C~~g~~g~ 301 (433)
..|| +++|.... +.|.|.|+.||.|+
T Consensus 3 ~~~C~n~g~C~~~~~~~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 3 SNPCQNGGTCIDLPGGGYTCECPPGYTGK 31 (32)
T ss_dssp TTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred CCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence 3477 48999888 99999999999886
No 51
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=94.97 E-value=0.01 Score=60.89 Aligned_cols=45 Identities=40% Similarity=0.706 Sum_probs=34.1
Q ss_pred ccCCcccccCCCceEEEEEeCC---C--cEEEEEecCCcCc-cchhhhccC
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD---G--RIVAVKKSKSVHE-SNVEQFINE 433 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d---g--~~VAVK~l~~~~~-~~~~eF~~E 433 (433)
....++||+|-||.||+|+..+ | ..||||..|...+ .+.+.|+.|
T Consensus 391 Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqE 441 (974)
T KOG4257|consen 391 ITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQE 441 (974)
T ss_pred ccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHH
Confidence 3446889999999999999844 2 4799999988643 445667765
No 52
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=94.90 E-value=0.02 Score=54.14 Aligned_cols=45 Identities=22% Similarity=0.464 Sum_probs=38.1
Q ss_pred cChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 377 FTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 377 f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.++.++..+.+.|...++||+|+||+||+|.. .++..||+|.+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~ 51 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDV 51 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 46677777888888889999999999999998 4578999998854
No 53
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=94.88 E-value=0.016 Score=58.40 Aligned_cols=31 Identities=42% Similarity=0.608 Sum_probs=26.7
Q ss_pred CcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
+++||+|-||+||-|+- ..|+.||||.+...
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKl 600 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKL 600 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecc
Confidence 47999999999999987 45999999998544
No 54
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=94.83 E-value=0.02 Score=52.67 Aligned_cols=37 Identities=35% Similarity=0.638 Sum_probs=30.9
Q ss_pred CCeecccCc-CCCCCCCccCCCCCCeeEeCCCCCCCCC
Q 035932 266 GCHDIDECN-EGYPCEGTCKNTPGSYACQCPIGMHGDG 302 (433)
Q Consensus 266 ~C~di~eC~-~~~~C~~~C~n~~gs~~C~C~~g~~g~~ 302 (433)
-|.+++||. ...+|...|.|+.|+|.|.|+.||....
T Consensus 183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~ 220 (224)
T cd01475 183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLE 220 (224)
T ss_pred cCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCC
Confidence 477888996 4457888999999999999999997653
No 55
>PTZ00036 glycogen synthase kinase; Provisional
Probab=94.82 E-value=0.023 Score=58.00 Aligned_cols=38 Identities=26% Similarity=0.503 Sum_probs=31.3
Q ss_pred hccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCCc
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKSV 422 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~ 422 (433)
..++|...++||+|+||+||+|+.. .++.||||++...
T Consensus 64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~ 102 (440)
T PTZ00036 64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD 102 (440)
T ss_pred cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC
Confidence 3456777889999999999999984 5789999998543
No 56
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=94.82 E-value=0.025 Score=55.36 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=30.0
Q ss_pred ccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 386 TDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
.+.|...+.||+|+||+||++.. .++..||||+++..
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 51 (343)
T cd07878 14 PERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRP 51 (343)
T ss_pred hhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCch
Confidence 34566668899999999999986 45789999998643
No 57
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=94.76 E-value=0.0077 Score=38.03 Aligned_cols=27 Identities=52% Similarity=1.056 Sum_probs=21.3
Q ss_pred CCC--CCccCCCCCCeeEeCCCCCCCCCc
Q 035932 277 YPC--EGTCKNTPGSYACQCPIGMHGDGT 303 (433)
Q Consensus 277 ~~C--~~~C~n~~gs~~C~C~~g~~g~~~ 303 (433)
..| ++.|.++.++|.|.|++||.|+..
T Consensus 6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~ 34 (36)
T PF12947_consen 6 GGCHPNATCTNTGGSYTCTCKPGYEGDGF 34 (36)
T ss_dssp GGS-TTCEEEE-TTSEEEEE-CEEECCST
T ss_pred CCCCCCcEeecCCCCEEeECCCCCccCCc
Confidence 456 489999999999999999999863
No 58
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.76 E-value=0.023 Score=54.37 Aligned_cols=43 Identities=28% Similarity=0.462 Sum_probs=32.5
Q ss_pred CccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhh
Q 035932 388 NYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQF 430 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF 430 (433)
+|...+.||+|+||.||++.- .++..||||.+........+.|
T Consensus 20 ~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~ 63 (297)
T cd06656 20 KYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELI 63 (297)
T ss_pred hceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHH
Confidence 455568899999999999996 5789999999975443333333
No 59
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=94.71 E-value=0.021 Score=57.54 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=34.8
Q ss_pred hhhccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCcCc
Q 035932 383 EKATDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSVHE 424 (433)
Q Consensus 383 ~~aT~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~~ 424 (433)
....++|..-.+||+|+||.||.+.-.+ |...|+|+|+....
T Consensus 137 r~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M 179 (550)
T KOG0605|consen 137 RLSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEM 179 (550)
T ss_pred cCCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHH
Confidence 3356778888899999999999998866 88999999976543
No 60
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=94.64 E-value=0.014 Score=38.26 Aligned_cols=26 Identities=35% Similarity=0.875 Sum_probs=23.2
Q ss_pred CCCCCCCceecCCCCcceEEecCCCCcC
Q 035932 234 ESCGDNTNLTYSENGQGYRCVCQPGYKG 261 (433)
Q Consensus 234 ~~C~~~~~C~~~~~~~gy~C~C~~g~~g 261 (433)
..|..++.|++..+ +|.|.|++||+.
T Consensus 10 ~~C~~~~~C~N~~G--sy~C~C~~Gy~~ 35 (42)
T PF07645_consen 10 HNCPENGTCVNTEG--SYSCSCPPGYEL 35 (42)
T ss_dssp SSSSTTSEEEEETT--EEEEEESTTEEE
T ss_pred CcCCCCCEEEcCCC--CEEeeCCCCcEE
Confidence 46888999999988 999999999983
No 61
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.54 E-value=0.017 Score=57.81 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=29.5
Q ss_pred CccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcC
Q 035932 388 NYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVH 423 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~ 423 (433)
.|...+.||+|.||.|||++- ..|.+||+||++...
T Consensus 118 ~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~ 154 (560)
T KOG0600|consen 118 SFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDN 154 (560)
T ss_pred HHHHHHHhcCcchhheeEeeecccCcEEEEEEeeccc
Confidence 344457899999999999985 668999999997654
No 62
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=94.47 E-value=0.011 Score=37.27 Aligned_cols=27 Identities=44% Similarity=0.912 Sum_probs=20.7
Q ss_pred CCCCCCccCCCCCCeeEeCCCCCCCCC
Q 035932 276 GYPCEGTCKNTPGSYACQCPIGMHGDG 302 (433)
Q Consensus 276 ~~~C~~~C~n~~gs~~C~C~~g~~g~~ 302 (433)
+..|...|.+++++|.|.|+.||....
T Consensus 5 NGgC~h~C~~~~g~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 5 NGGCSHICVNTPGSYRCSCPPGYKLAE 31 (36)
T ss_dssp GGGSSSEEEEETTSEEEE-STTEEE-T
T ss_pred CCCcCCCCccCCCceEeECCCCCEECc
Confidence 345778899999999999999997654
No 63
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.36 E-value=0.018 Score=57.21 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=32.0
Q ss_pred HhhhccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 382 LEKATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 382 L~~aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
+....++|...++||+|+||+||++... ++..||||+++.
T Consensus 38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05596 38 LRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK 78 (370)
T ss_pred CCCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence 3344566777789999999999999874 578999999853
No 64
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=94.35 E-value=0.021 Score=55.69 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=28.4
Q ss_pred CccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 388 NYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
+|...+.||+|+||.||++... +++.||||.++.
T Consensus 19 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~ 53 (329)
T PTZ00263 19 DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKK 53 (329)
T ss_pred heEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 4445678999999999999985 578999999864
No 65
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=0.034 Score=50.72 Aligned_cols=35 Identities=31% Similarity=0.405 Sum_probs=28.8
Q ss_pred ccCccCCcccccCCCceEEEEEeC-CCcEEEEEecC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSK 420 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~ 420 (433)
.++|.-.+.||+|.||.||-|.-+ ++-+||+|++-
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlf 56 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLF 56 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCcEEEEeeee
Confidence 345666789999999999999984 46799999993
No 66
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=94.14 E-value=0.034 Score=52.67 Aligned_cols=41 Identities=27% Similarity=0.441 Sum_probs=34.1
Q ss_pred hhhccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCCcC
Q 035932 383 EKATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKSVH 423 (433)
Q Consensus 383 ~~aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~~ 423 (433)
...+++|...+.||+|++|.||++... ++..||+|+++...
T Consensus 15 ~~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~ 56 (286)
T cd06614 15 GDPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRK 56 (286)
T ss_pred CCccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCc
Confidence 446667777789999999999999996 68899999997643
No 67
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=94.13 E-value=0.042 Score=52.50 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=30.5
Q ss_pred cccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhhcc
Q 035932 393 RILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQFIN 432 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF~~ 432 (433)
..||+|+||.||++.. .++..||||+++.......+.|.+
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~ 66 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFN 66 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHH
Confidence 5799999999999988 568899999986544433344443
No 68
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=94.10 E-value=0.042 Score=53.88 Aligned_cols=37 Identities=32% Similarity=0.441 Sum_probs=30.9
Q ss_pred hccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
..++|...+.||+|+||+||++.. .+|..||||+++.
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 50 (343)
T cd07880 13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYR 50 (343)
T ss_pred cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecc
Confidence 455677778999999999999986 5689999999854
No 69
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=94.04 E-value=0.05 Score=52.51 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=33.1
Q ss_pred ecChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 376 LFTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 376 ~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
.+++.||++- ++||+|..|+|||... +.+...|.|++...
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~ 115 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLN 115 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeeccc
Confidence 3667777764 7999999999999998 45889999999554
No 70
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=94.03 E-value=0.026 Score=56.07 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=33.2
Q ss_pred hhHhhhccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 380 KDLEKATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 380 ~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
+++....++|...++||+|+||.||++... ++..||+|.++.
T Consensus 36 ~~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05621 36 RKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK 78 (370)
T ss_pred HhcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 344455567777789999999999999985 478999999853
No 71
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=93.95 E-value=0.048 Score=52.08 Aligned_cols=46 Identities=30% Similarity=0.492 Sum_probs=33.2
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhhcc
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQFIN 432 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF~~ 432 (433)
++|...+.||+|+||.||++.. .++..||+|.++.......+.|.+
T Consensus 19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~ 65 (293)
T cd06647 19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIIN 65 (293)
T ss_pred hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHH
Confidence 4455567899999999999986 467899999986544333344433
No 72
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=93.87 E-value=0.045 Score=52.19 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=28.8
Q ss_pred ccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
|...+.||+|++|+||++...+ +..||||+++..
T Consensus 17 ~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~ 51 (296)
T cd06618 17 LENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRT 51 (296)
T ss_pred heeeeEeeccCCeEEEEEEECCCCeEEEEEEEecc
Confidence 4446799999999999999965 889999999654
No 73
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.77 E-value=0.047 Score=52.40 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=29.0
Q ss_pred CccCCcccccCCCceEEEEEeC-CCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~ 422 (433)
.|...+.||+|+||+||+|+.. ++..||||+++..
T Consensus 16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~ 51 (307)
T cd06607 16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYS 51 (307)
T ss_pred hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEecc
Confidence 3556688999999999999984 5889999998643
No 74
>smart00090 RIO RIO-like kinase.
Probab=93.76 E-value=0.048 Score=50.64 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=29.6
Q ss_pred CccCCcccccCCCceEEEEE--eCCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGM--LTDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~--L~dg~~VAVK~l~~~ 422 (433)
.+...+.||+|++|.||+|+ ..+|+.||||+++..
T Consensus 29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~ 65 (237)
T smart00090 29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTG 65 (237)
T ss_pred hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcC
Confidence 34556789999999999998 678999999998653
No 75
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=93.76 E-value=0.051 Score=51.96 Aligned_cols=43 Identities=28% Similarity=0.472 Sum_probs=31.7
Q ss_pred CccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhh
Q 035932 388 NYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQF 430 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF 430 (433)
.|...+.||+|+||+||+|+. .++..||||++........+.|
T Consensus 21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~ 64 (296)
T cd06654 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELI 64 (296)
T ss_pred ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHH
Confidence 344457899999999999986 5688999999975443333334
No 76
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.76 E-value=0.033 Score=51.09 Aligned_cols=57 Identities=30% Similarity=0.705 Sum_probs=44.3
Q ss_pred CCCCCCCceecCCCCcceEEecCCCCcCCCCCCCeecccCcC-CCCC---CCccCCCCCCeeEeCCCCCC
Q 035932 234 ESCGDNTNLTYSENGQGYRCVCQPGYKGNPYLGCHDIDECNE-GYPC---EGTCKNTPGSYACQCPIGMH 299 (433)
Q Consensus 234 ~~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di~eC~~-~~~C---~~~C~n~~gs~~C~C~~g~~ 299 (433)
..|.....|++..+ .|.|.+.+||++. .|+|.. ...| ++.|.|+.+.|.|.|..++.
T Consensus 244 ~~c~~~qfCvNteG--Sf~C~dk~Gy~~g-------~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~ 304 (350)
T KOG4260|consen 244 APCKAHQFCVNTEG--SFKCEDKEGYKKG-------VDECQFCADVCASKNRPCMNIDGQYRCVCFSGLI 304 (350)
T ss_pred CCCChhheeecCCC--ceEecccccccCC-------hHHhhhhhhhcccCCCCcccCCccEEEEecccce
Confidence 36778899999887 8999999999862 566641 1233 57899999999999998763
No 77
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.74 E-value=0.045 Score=53.98 Aligned_cols=35 Identities=34% Similarity=0.404 Sum_probs=29.2
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
+.|...+.||+|+||.||++.- ..|..||||+++.
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 56 (359)
T cd07876 21 KRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSR 56 (359)
T ss_pred hceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecc
Confidence 4566678999999999999986 4588999999964
No 78
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=93.69 E-value=0.054 Score=55.13 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=29.5
Q ss_pred CccCCcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.|++ +-||+|++|.||||++.+|+.||||+.+..
T Consensus 119 ~fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~ 152 (437)
T TIGR01982 119 EFEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPG 152 (437)
T ss_pred hCCC-cceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence 3443 679999999999999999999999999765
No 79
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=93.68 E-value=0.048 Score=52.22 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=30.2
Q ss_pred cccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhhcc
Q 035932 393 RILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQFIN 432 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF~~ 432 (433)
..||+|+||.||++.. .++..||||+++.......+.|.+
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~ 67 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFN 67 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHH
Confidence 5799999999999987 468999999996544443444443
No 80
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=93.65 E-value=0.041 Score=52.55 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=30.1
Q ss_pred cccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhhcc
Q 035932 393 RILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQFIN 432 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF~~ 432 (433)
..||+|+||.||++.. .++..||||+++.......+.|.+
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~ 68 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFN 68 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHH
Confidence 5699999999999987 458899999986654444444443
No 81
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=93.63 E-value=0.059 Score=51.18 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=31.2
Q ss_pred cCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhhc
Q 035932 390 NVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQFI 431 (433)
Q Consensus 390 ~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF~ 431 (433)
..-+.||+|++|.||++.. .++..||||+++.......+.|.
T Consensus 22 ~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~ 64 (285)
T cd06648 22 DNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLF 64 (285)
T ss_pred hcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHH
Confidence 3347999999999999986 46889999998655433333343
No 82
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.58 E-value=0.06 Score=55.92 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=32.5
Q ss_pred hccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCCcC
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKSVH 423 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~~ 423 (433)
..++|....+||+|.||.|+.+.+. ++...|||.|+...
T Consensus 366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~ 405 (694)
T KOG0694|consen 366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGD 405 (694)
T ss_pred cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccc
Confidence 3467777889999999999999994 46789999997653
No 83
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=93.53 E-value=0.094 Score=32.22 Aligned_cols=26 Identities=65% Similarity=1.421 Sum_probs=22.0
Q ss_pred CCCCC--CccCCCCCCeeEeCCCCCCCC
Q 035932 276 GYPCE--GTCKNTPGSYACQCPIGMHGD 301 (433)
Q Consensus 276 ~~~C~--~~C~n~~gs~~C~C~~g~~g~ 301 (433)
..+|. +.|.+..+.|.|.|+.||.++
T Consensus 5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence 34663 889999999999999999887
No 84
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=93.52 E-value=0.059 Score=53.23 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=29.7
Q ss_pred ccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.++|...+.||+|+||.||++.- ..++.||||+++.
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 59 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence 35566678999999999999986 3578999999964
No 85
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=93.45 E-value=0.054 Score=53.86 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=35.3
Q ss_pred hhhHhhhccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 379 SKDLEKATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 379 ~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
..++....++|...+.||+|+||+||++... .+..||+|.++.
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~ 78 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 78 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEH
Confidence 4556666778888899999999999999985 478999999853
No 86
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=93.33 E-value=0.058 Score=51.58 Aligned_cols=44 Identities=32% Similarity=0.496 Sum_probs=32.8
Q ss_pred CccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCccchhhhc
Q 035932 388 NYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHESNVEQFI 431 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~~~~eF~ 431 (433)
+|...+.||.|++|+||+|+- .+++.||||.+........+.|.
T Consensus 20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~ 64 (296)
T cd06655 20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELII 64 (296)
T ss_pred eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHH
Confidence 455567899999999999985 56899999998654443334443
No 87
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=93.31 E-value=0.063 Score=52.54 Aligned_cols=35 Identities=29% Similarity=0.483 Sum_probs=29.3
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
++|...+.||+|+||+||+|+. .+|..||||+++.
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~ 50 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSR 50 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecC
Confidence 3565568999999999999996 4689999999864
No 88
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=93.22 E-value=0.063 Score=51.87 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=28.5
Q ss_pred ccCCcccccCCCceEEEEEeC-CCcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~ 422 (433)
|...+.||+|+||.||+++.. ++..||||++...
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~ 61 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYS 61 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecC
Confidence 555788999999999999974 5789999998643
No 89
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.18 E-value=0.11 Score=32.09 Aligned_cols=25 Identities=64% Similarity=1.388 Sum_probs=21.0
Q ss_pred CCCCC-ccCCCCCCeeEeCCCCCCCC
Q 035932 277 YPCEG-TCKNTPGSYACQCPIGMHGD 301 (433)
Q Consensus 277 ~~C~~-~C~n~~gs~~C~C~~g~~g~ 301 (433)
.+|.. .|.+..++|.|.|+.||.++
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g~ 31 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTGD 31 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCccC
Confidence 56743 89999999999999999883
No 90
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=93.16 E-value=0.039 Score=54.12 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=26.9
Q ss_pred CccCCcccccCCCceEEEEEeCC--CcEEEEEecCC
Q 035932 388 NYNVSRILGQGGQGTVFKGMLTD--GRIVAVKKSKS 421 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~d--g~~VAVK~l~~ 421 (433)
+|...+.||+|+||.||++...+ +..||||+++.
T Consensus 31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~ 66 (340)
T PTZ00426 31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK 66 (340)
T ss_pred hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEH
Confidence 34446789999999999998744 36899999853
No 91
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=93.05 E-value=0.066 Score=52.65 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=29.8
Q ss_pred ccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 386 TDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
.++|...+.||+|+||.||++.- ..+..||||+++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 53 (355)
T cd07874 16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRP 53 (355)
T ss_pred hhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCc
Confidence 34566678999999999999986 34789999999653
No 92
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=93.05 E-value=0.054 Score=52.01 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=28.4
Q ss_pred cCccCCcccccCCCceEEEEEe------CCCcEEEEEecCCc
Q 035932 387 DNYNVSRILGQGGQGTVFKGML------TDGRIVAVKKSKSV 422 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L------~dg~~VAVK~l~~~ 422 (433)
++|...+.||+|+||.||++.. ..+..||||+++..
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 76 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPT 76 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCcc
Confidence 4566678999999999999975 12457999998754
No 93
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.03 E-value=0.059 Score=55.23 Aligned_cols=46 Identities=28% Similarity=0.404 Sum_probs=33.7
Q ss_pred cChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCcc
Q 035932 377 FTSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHES 425 (433)
Q Consensus 377 f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~ 425 (433)
|.-+|-++. |.+-+.||.|.||.||-+.- .+..+|||||+.....+
T Consensus 19 F~k~DPEkl---f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQ 65 (948)
T KOG0577|consen 19 FFKDDPEKL---FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQ 65 (948)
T ss_pred HccCCHHHH---HHHHHHhcCCccceeEEeeccCccceeeeeeccccccc
Confidence 444444443 55568899999999999875 45679999999766443
No 94
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=92.86 E-value=0.063 Score=51.42 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=26.4
Q ss_pred ccCCcccccCCCceEEEEEe--------CCCcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGML--------TDGRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L--------~dg~~VAVK~l~~~ 422 (433)
|...+.||+|+||.||++.. .++..||||.++..
T Consensus 17 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~ 58 (304)
T cd05101 17 LTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDD 58 (304)
T ss_pred eeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccc
Confidence 44468999999999999975 13458999999753
No 95
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=92.75 E-value=0.029 Score=57.15 Aligned_cols=46 Identities=33% Similarity=0.517 Sum_probs=35.1
Q ss_pred ceecChhhHhhhccCccCCcccccCCCceEEEEEeCCCcEEEEEecCCcCccch
Q 035932 374 TKLFTSKDLEKATDNYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSVHESNV 427 (433)
Q Consensus 374 ~~~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~~~~~ 427 (433)
.+.+.+++|.+ -+-||.|+.|.||.|.| .++.|||||+++..+.++
T Consensus 118 ~WeiPFe~IsE-------LeWlGSGaQGAVF~Grl-~netVAVKKV~elkETdI 163 (904)
T KOG4721|consen 118 LWEIPFEEISE-------LEWLGSGAQGAVFLGRL-HNETVAVKKVRELKETDI 163 (904)
T ss_pred hccCCHHHhhh-------hhhhccCcccceeeeec-cCceehhHHHhhhhhhhH
Confidence 34466666654 47899999999999999 568899999977654433
No 96
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=92.74 E-value=0.035 Score=45.66 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=28.9
Q ss_pred ccCCcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
|+ .+-|+.|+.|.||+|+|.+|+.||||..+-.
T Consensus 14 fd-~~PlasASiaQVh~a~l~~g~~VaVKV~rP~ 46 (119)
T PF03109_consen 14 FD-PEPLASASIAQVHRARLKDGEEVAVKVQRPG 46 (119)
T ss_pred CC-cchhhheehhhheeeeecccchhhhhhcchH
Confidence 44 3679999999999999999999999998754
No 97
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=92.68 E-value=0.17 Score=51.58 Aligned_cols=62 Identities=39% Similarity=0.898 Sum_probs=51.4
Q ss_pred CceecCCCCcceEEecCCCCcCCCCCCCeecccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCc
Q 035932 240 TNLTYSENGQGYRCVCQPGYKGNPYLGCHDIDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGT 303 (433)
Q Consensus 240 ~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~ 303 (433)
+.|.+... +|.|.|+.||.+.....|.++++|....+| ++.|.+..+.|.|.|+.||.+..+
T Consensus 243 ~~c~~~~~--~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~~~~C~C~~g~~g~~~ 306 (487)
T KOG1217|consen 243 GTCVNTVG--SYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPGSYRCTCPPGFTGRLC 306 (487)
T ss_pred CcccccCC--ceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCCcceeeCCCCCCCCCC
Confidence 77777666 699999999999884447899999743236 589999999999999999999886
No 98
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=92.63 E-value=0.13 Score=31.52 Aligned_cols=26 Identities=38% Similarity=1.060 Sum_probs=22.6
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGN 262 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~ 262 (433)
.|.+++.|.+..+ +|.|.|+.||.|+
T Consensus 7 ~C~~~~~C~~~~~--~~~C~C~~g~~g~ 32 (36)
T cd00053 7 PCSNGGTCVNTPG--SYRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCEEecCCC--CeEeECCCCCccc
Confidence 5888899988775 8999999999987
No 99
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=92.53 E-value=0.08 Score=51.85 Aligned_cols=37 Identities=35% Similarity=0.477 Sum_probs=30.9
Q ss_pred hccCccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
..++|...+.||+|++|+||+|... ++..||||+++.
T Consensus 13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~ 50 (343)
T cd07851 13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSR 50 (343)
T ss_pred ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccc
Confidence 3556766789999999999999985 578999999864
No 100
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=92.52 E-value=0.015 Score=54.60 Aligned_cols=35 Identities=29% Similarity=0.555 Sum_probs=29.2
Q ss_pred ccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcC
Q 035932 389 YNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVH 423 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~ 423 (433)
|+....||+|.||.|||++- ..|.+||||++...+
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s 70 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT 70 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc
Confidence 55567899999999999987 458999999997643
No 101
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=92.13 E-value=0.19 Score=31.77 Aligned_cols=27 Identities=33% Similarity=0.887 Sum_probs=22.2
Q ss_pred CCCCCCceecCCCCcceEEecCCCCc-CCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYK-GNP 263 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~-g~~ 263 (433)
.|..++.|.+..+ +|.|.|+.||. |..
T Consensus 10 ~C~~~~~C~~~~g--~~~C~C~~g~~~g~~ 37 (39)
T smart00179 10 PCQNGGTCVNTVG--SYRCECPPGYTDGRN 37 (39)
T ss_pred CcCCCCEeECCCC--CeEeECCCCCccCCc
Confidence 4887889987766 79999999998 654
No 102
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=92.05 E-value=0.12 Score=50.75 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=29.9
Q ss_pred ccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.+.|...+.||+|+||+||++.- .+|..||||+++.
T Consensus 15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~ 51 (353)
T cd07850 15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSR 51 (353)
T ss_pred hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCc
Confidence 35566678999999999999987 4688999999854
No 103
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=91.98 E-value=0.12 Score=53.09 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=29.4
Q ss_pred CccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 388 NYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.+...++||+|||..||+++- ..|..||+|++..
T Consensus 19 ~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk 53 (592)
T KOG0575|consen 19 RYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPK 53 (592)
T ss_pred eeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeeh
Confidence 355578999999999999997 7799999999844
No 104
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=91.70 E-value=0.16 Score=52.93 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=30.2
Q ss_pred cCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 387 DNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
..|++ +-||+|++|.||++++.+ |+.||||+++..
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 34665 689999999999999988 999999999754
No 105
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=91.69 E-value=0.13 Score=49.65 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=29.0
Q ss_pred ccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
+...+.||+|.||+||++...+ |...|||.+...
T Consensus 19 ~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~ 53 (313)
T KOG0198|consen 19 WSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELE 53 (313)
T ss_pred hhhhccccCccceEEEEEEecCCCcceeeeeeecc
Confidence 3446899999999999999865 899999998765
No 106
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=91.63 E-value=0.054 Score=50.64 Aligned_cols=31 Identities=39% Similarity=0.590 Sum_probs=26.9
Q ss_pred CcccccCCCceEEEEE-eCCCcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGM-LTDGRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~-L~dg~~VAVK~l~~~ 422 (433)
..+||+|.||+|||.. +.+|..||.|+++-.
T Consensus 24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~ 55 (375)
T KOG0591|consen 24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFG 55 (375)
T ss_pred HHHHcCCcchheEEeeeccCcchhhhhhcchh
Confidence 4689999999999987 588999999999743
No 107
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=91.59 E-value=0.11 Score=49.72 Aligned_cols=35 Identities=31% Similarity=0.246 Sum_probs=27.0
Q ss_pred CccCCcccccCCCceEEEEEeC--------CCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLT--------DGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~--------dg~~VAVK~l~~~ 422 (433)
.|...+.||+|+||.||++... +...+|+|.++..
T Consensus 19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~ 61 (307)
T cd05098 19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSD 61 (307)
T ss_pred HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCC
Confidence 3455689999999999999752 2357999999754
No 108
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=91.42 E-value=0.061 Score=59.37 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=31.0
Q ss_pred hccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
..+.|.+-.+||+||||.|||.+= -||+..||||+...
T Consensus 477 Y~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~ 515 (1351)
T KOG1035|consen 477 YLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLK 515 (1351)
T ss_pred HhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCc
Confidence 345566668999999999999874 38999999999664
No 109
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=91.10 E-value=0.18 Score=48.59 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=26.2
Q ss_pred CcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
.+.||+|+||+||+|+. .++..||||++...
T Consensus 26 ~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~ 57 (313)
T cd06633 26 LHEIGHGSFGAVYFATNSHTNEVVAVKKMSYS 57 (313)
T ss_pred ceeeccCCCeEEEEEEECCCCcEEEEEEEecc
Confidence 46799999999999997 45789999998643
No 110
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=90.98 E-value=0.12 Score=49.73 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=27.3
Q ss_pred ccCCcccccCCCceEEEEEeC-CCcEEEEEecCC
Q 035932 389 YNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKS 421 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~ 421 (433)
|...+.||+|+||+||+|+.. ++..||||++..
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~ 50 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY 50 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEec
Confidence 444578999999999999974 578999999854
No 111
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=90.75 E-value=0.14 Score=54.43 Aligned_cols=52 Identities=31% Similarity=0.406 Sum_probs=35.2
Q ss_pred HhhhccCccCCcccccCCCceEEEEEeCC--------CcEEEEEecCCcC-ccchhhhccC
Q 035932 382 LEKATDNYNVSRILGQGGQGTVFKGMLTD--------GRIVAVKKSKSVH-ESNVEQFINE 433 (433)
Q Consensus 382 L~~aT~~F~~~~~IG~G~fG~VYKG~L~d--------g~~VAVK~l~~~~-~~~~~eF~~E 433 (433)
++...+++...+.||+|.||.|+||.+.. ...||||+++... ..+.++|..|
T Consensus 291 ~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~E 351 (609)
T KOG0200|consen 291 WEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSE 351 (609)
T ss_pred eeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHH
Confidence 33444444445699999999999999731 4589999998763 3444555543
No 112
>PHA03211 serine/threonine kinase US3; Provisional
Probab=90.52 E-value=0.2 Score=51.39 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=28.7
Q ss_pred ccCccCCcccccCCCceEEEEEeCC-CcEEEEEecC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSK 420 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~ 420 (433)
..+|...+.||+|+||.||++..++ ++.||||+..
T Consensus 168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~ 203 (461)
T PHA03211 168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW 203 (461)
T ss_pred cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc
Confidence 3457667899999999999999854 7889999753
No 113
>smart00181 EGF Epidermal growth factor-like domain.
Probab=90.45 E-value=0.29 Score=30.15 Aligned_cols=25 Identities=32% Similarity=0.986 Sum_probs=20.6
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGN 262 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~ 262 (433)
.|..+ .|.+..+ +|.|.|+.||.|+
T Consensus 7 ~C~~~-~C~~~~~--~~~C~C~~g~~g~ 31 (35)
T smart00181 7 PCSNG-TCINTPG--SYTCSCPPGYTGD 31 (35)
T ss_pred CCCCC-EEECCCC--CeEeECCCCCccC
Confidence 47766 8987754 8999999999985
No 114
>PHA03209 serine/threonine kinase US3; Provisional
Probab=90.35 E-value=0.29 Score=48.20 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=29.4
Q ss_pred ccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKS 421 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~ 421 (433)
..+|...+.||+|+||.||+|.... +..||+|....
T Consensus 65 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~ 101 (357)
T PHA03209 65 SLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQK 101 (357)
T ss_pred hcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCc
Confidence 3467778899999999999999854 67899997543
No 115
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=90.04 E-value=0.38 Score=29.89 Aligned_cols=27 Identities=33% Similarity=0.898 Sum_probs=22.0
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNP 263 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~ 263 (433)
.|.+++.|.+..+ +|.|.|..||.|..
T Consensus 10 ~C~~~~~C~~~~~--~~~C~C~~g~~g~~ 36 (38)
T cd00054 10 PCQNGGTCVNTVG--SYRCSCPPGYTGRN 36 (38)
T ss_pred CcCCCCEeECCCC--CeEeECCCCCcCCc
Confidence 4777788987766 79999999998854
No 116
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=89.82 E-value=0.19 Score=55.34 Aligned_cols=41 Identities=27% Similarity=0.619 Sum_probs=33.6
Q ss_pred hHhhhccCccCCcccccCCCceEEEEEeCCCcEEEEEecCC
Q 035932 381 DLEKATDNYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKS 421 (433)
Q Consensus 381 eL~~aT~~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~ 421 (433)
+++..-..|....+||+|+||+||+|+-.+|..||+|.-+-
T Consensus 692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P 732 (974)
T KOG1166|consen 692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKP 732 (974)
T ss_pred eeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecC
Confidence 44444555777789999999999999999999999997653
No 117
>PHA03212 serine/threonine kinase US3; Provisional
Probab=89.62 E-value=0.26 Score=49.44 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=29.0
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
++|...+.||+|+||.||++.- ..++.||||+.+.
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~ 127 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQR 127 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhh
Confidence 4577778999999999999987 4578999998753
No 118
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=89.33 E-value=0.27 Score=51.45 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=26.0
Q ss_pred ChhhHhhhccCccCCcccccCCCceEEEEEeCCCcEE
Q 035932 378 TSKDLEKATDNYNVSRILGQGGQGTVFKGMLTDGRIV 414 (433)
Q Consensus 378 ~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~dg~~V 414 (433)
+++........+...++||+|+||+||||.+.+...+
T Consensus 324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v 360 (535)
T PRK09605 324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRDAV 360 (535)
T ss_pred eeccccccccccCccceeccCCcEEEEEEeecCccce
Confidence 3444444445556678999999999999998655433
No 119
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=88.84 E-value=0.31 Score=44.74 Aligned_cols=44 Identities=30% Similarity=0.508 Sum_probs=33.3
Q ss_pred ChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 378 TSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 378 ~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
+++|+..+. ++...+.||.|+||..|.|.- .+|..||||.-+..
T Consensus 7 s~~~~iv~g-ky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~ 51 (341)
T KOG1163|consen 7 SLEELIVGG-KYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK 51 (341)
T ss_pred chhhheecc-ceEEEEeecCCchhheeeeeeccCCceEEEEeeccc
Confidence 445555543 344568899999999999975 78999999987544
No 120
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=88.81 E-value=0.19 Score=45.09 Aligned_cols=50 Identities=26% Similarity=0.378 Sum_probs=33.7
Q ss_pred HhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc-Cccchhhhc
Q 035932 382 LEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV-HESNVEQFI 431 (433)
Q Consensus 382 L~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~-~~~~~~eF~ 431 (433)
++.+.+.+.....||+|++|.|=|-++ .+|+..|||+++.. +.++.+..+
T Consensus 41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L 92 (282)
T KOG0984|consen 41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLL 92 (282)
T ss_pred cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHH
Confidence 344444444457899999998877665 67999999999765 333334333
No 121
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=88.40 E-value=0.044 Score=53.43 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=36.5
Q ss_pred hhHhhhccCccCCcccccCCCceEEEEEeCC------CcEEEEEecCCc-CccchhhhccC
Q 035932 380 KDLEKATDNYNVSRILGQGGQGTVFKGMLTD------GRIVAVKKSKSV-HESNVEQFINE 433 (433)
Q Consensus 380 ~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~d------g~~VAVK~l~~~-~~~~~~eF~~E 433 (433)
+||......|....++-+|.||.||+|+|.+ .+.|-||.++.. ++-+..-|+.|
T Consensus 277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~e 337 (563)
T KOG1024|consen 277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQE 337 (563)
T ss_pred HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3444444556667788999999999998854 346788888765 44444545443
No 122
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=88.28 E-value=0.31 Score=52.03 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=32.9
Q ss_pred CcccccCCCceEEEEEeCCC-cEEEEEecCCcCccchhhhcc
Q 035932 392 SRILGQGGQGTVFKGMLTDG-RIVAVKKSKSVHESNVEQFIN 432 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg-~~VAVK~l~~~~~~~~~eF~~ 432 (433)
.++|-+|||+.||-+....+ ..+|+||+-..++...+...+
T Consensus 42 ~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~ 83 (738)
T KOG1989|consen 42 EKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKR 83 (738)
T ss_pred EEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHH
Confidence 68999999999999999776 999999997665555444333
No 123
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=87.94 E-value=0.27 Score=47.53 Aligned_cols=37 Identities=32% Similarity=0.618 Sum_probs=30.2
Q ss_pred ccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
.+.|...++||+|+||.||...-.| ++..|.|.|+..
T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~ 61 (357)
T KOG0598|consen 24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK 61 (357)
T ss_pred hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhh
Confidence 3557778999999999999887755 789999999543
No 124
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=87.81 E-value=0.18 Score=53.68 Aligned_cols=32 Identities=44% Similarity=0.753 Sum_probs=27.5
Q ss_pred CccCCcccccCCCc-eEEEEEeCCCcEEEEEecC
Q 035932 388 NYNVSRILGQGGQG-TVFKGMLTDGRIVAVKKSK 420 (433)
Q Consensus 388 ~F~~~~~IG~G~fG-~VYKG~L~dg~~VAVK~l~ 420 (433)
-|+..+++|.|..| .||+|++ +|+.|||||+-
T Consensus 510 ~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll 542 (903)
T KOG1027|consen 510 FFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLL 542 (903)
T ss_pred eeccHHHcccCCCCcEEEEEee-CCceehHHHHh
Confidence 46777899999987 5799999 78999999983
No 125
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=86.86 E-value=0.34 Score=23.18 Aligned_cols=10 Identities=50% Similarity=1.511 Sum_probs=5.3
Q ss_pred EecCCCCcCC
Q 035932 253 CVCQPGYKGN 262 (433)
Q Consensus 253 C~C~~g~~g~ 262 (433)
|.|++||.|.
T Consensus 2 C~C~~G~~G~ 11 (13)
T PF12661_consen 2 CQCPPGWTGP 11 (13)
T ss_dssp EEE-TTEETT
T ss_pred ccCcCCCcCC
Confidence 5666666654
No 126
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=86.81 E-value=0.49 Score=47.19 Aligned_cols=34 Identities=32% Similarity=0.439 Sum_probs=28.5
Q ss_pred ccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
+...++||+|.||.||+.+-+. |..+|+|.++..
T Consensus 37 Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~ 71 (382)
T KOG0032|consen 37 YELGRELGRGQFGVVYLCREKSTGKEVACKVIPKR 71 (382)
T ss_pred EEehhhhCCCCceEEEEEEecCCCceeEEEEeehh
Confidence 3445799999999999999866 899999998544
No 127
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=86.15 E-value=0.66 Score=48.07 Aligned_cols=31 Identities=39% Similarity=0.531 Sum_probs=26.9
Q ss_pred CcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
.++||+|.||.|-|+.-.. ++.||||.+|..
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~ 222 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK 222 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeeccC
Confidence 4789999999999998644 889999999764
No 128
>KOG1217 consensus Fibrillins and related proteins containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=85.85 E-value=1.6 Score=44.28 Aligned_cols=67 Identities=36% Similarity=0.902 Sum_probs=50.2
Q ss_pred CCCCCceecCCCCcceEEecCCCCcCCCCCCCeecccCc---CCCCC--CCcc--CCCCCCeeEeCCCCCCCCCcc
Q 035932 236 CGDNTNLTYSENGQGYRCVCQPGYKGNPYLGCHDIDECN---EGYPC--EGTC--KNTPGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 236 C~~~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di~eC~---~~~~C--~~~C--~n~~gs~~C~C~~g~~g~~~~ 304 (433)
|.++..|.+..+ .|.|.|++||.|.....|.+.++|. ...+| ++.| .+..+.+.|.|..++.|..++
T Consensus 280 c~~~~~C~~~~~--~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~ 353 (487)
T KOG1217|consen 280 CPNGGTCVNVPG--SYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCE 353 (487)
T ss_pred cCCCCeeecCCC--cceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccc
Confidence 777888887766 4999999999999863356677885 34557 3477 444567889999998877664
No 129
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=85.59 E-value=0.43 Score=46.10 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=27.8
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecC
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSK 420 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~ 420 (433)
..+...+.||+|++|.|.+++- ++|..|||||+.
T Consensus 22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~ 56 (359)
T KOG0660|consen 22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKIL 56 (359)
T ss_pred ceecccccccCcceeeEEEEEEcCCCCEeehhhhh
Confidence 3344357899999999999987 568999999996
No 130
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=85.50 E-value=0.52 Score=48.58 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=27.5
Q ss_pred ccCCcccccCCCceEEEEEeC-C-CcEEEEEecCCcCcc
Q 035932 389 YNVSRILGQGGQGTVFKGMLT-D-GRIVAVKKSKSVHES 425 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~-d-g~~VAVK~l~~~~~~ 425 (433)
|...++||+|+||.||++.-. + +..||+|++......
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~ 107 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDER 107 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHH
Confidence 444678999999999999763 3 567899987554433
No 131
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=84.57 E-value=1.3 Score=34.77 Aligned_cols=9 Identities=33% Similarity=0.697 Sum_probs=4.9
Q ss_pred eCCCCCCCC
Q 035932 293 QCPIGMHGD 301 (433)
Q Consensus 293 ~C~~g~~g~ 301 (433)
.|.+||..+
T Consensus 41 ~C~~GY~~~ 49 (96)
T PTZ00382 41 ECNSGFSLD 49 (96)
T ss_pred cCcCCcccC
Confidence 355666544
No 132
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=83.75 E-value=1.1 Score=41.89 Aligned_cols=35 Identities=20% Similarity=0.150 Sum_probs=26.3
Q ss_pred cCccCCcc--cccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 387 DNYNVSRI--LGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 387 ~~F~~~~~--IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
+++...+. ||+|+||.||++.- .++..+|+|.++.
T Consensus 14 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 14 KNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred HhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 34433344 59999999999987 4578899999854
No 133
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=83.59 E-value=0.38 Score=44.36 Aligned_cols=41 Identities=32% Similarity=0.518 Sum_probs=31.7
Q ss_pred ccCCcccccCCCceEEEEE-eCCCcEEEEEecCCcCccchhh
Q 035932 389 YNVSRILGQGGQGTVFKGM-LTDGRIVAVKKSKSVHESNVEQ 429 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~-L~dg~~VAVK~l~~~~~~~~~e 429 (433)
|...+.||+|||..||-+. +.++...|+||+...+.++.++
T Consensus 23 yri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~ 64 (302)
T KOG2345|consen 23 YRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEE 64 (302)
T ss_pred EEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHH
Confidence 4446789999999999877 5778899999997766444433
No 134
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=83.08 E-value=1.1 Score=45.05 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=32.4
Q ss_pred hhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 383 EKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 383 ~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
.+..|.|.....||+|.||.|-++.- .++..||||.|...
T Consensus 93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~ 133 (576)
T KOG0585|consen 93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKK 133 (576)
T ss_pred ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechh
Confidence 44556777778999999999998875 56889999999554
No 135
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=83.05 E-value=0.44 Score=46.92 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=31.4
Q ss_pred hccCccCCcccccCCCceEEEEEeCC----CcEEEEEecCCcC
Q 035932 385 ATDNYNVSRILGQGGQGTVFKGMLTD----GRIVAVKKSKSVH 423 (433)
Q Consensus 385 aT~~F~~~~~IG~G~fG~VYKG~L~d----g~~VAVK~l~~~~ 423 (433)
..+.|...+.||+|.|++|||+++.. .+-||+|.+...+
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts 76 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS 76 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc
Confidence 34556778999999999999999843 5689999996653
No 136
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=82.83 E-value=0.94 Score=29.09 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=7.8
Q ss_pred eEEeeeeeeehhhhHhh
Q 035932 313 TIVAGCVVVLGLLFLLL 329 (433)
Q Consensus 313 ~~~i~~~i~~~~~lvl~ 329 (433)
...+++++++.+..+++
T Consensus 10 ~vaIa~~VvVPV~vI~~ 26 (40)
T PF08693_consen 10 TVAIAVGVVVPVGVIII 26 (40)
T ss_pred eEEEEEEEEechHHHHH
Confidence 34455555544433333
No 137
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=82.60 E-value=0.76 Score=45.40 Aligned_cols=46 Identities=30% Similarity=0.360 Sum_probs=33.6
Q ss_pred ecChhhHhhhccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 376 LFTSKDLEKATDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 376 ~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
..+-.+..+||+ |+-..+||+|+||.|..+.-.. ....|||.|+..
T Consensus 339 ~~~~~d~i~~tD-FnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKD 385 (683)
T KOG0696|consen 339 NSSKRDRIKATD-FNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKD 385 (683)
T ss_pred CCCcccceeecc-cceEEEeccCccceeeeecccCcchhhhhhhhccc
Confidence 344556666764 4447899999999999887633 357899999754
No 138
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=82.32 E-value=0.66 Score=47.29 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=30.8
Q ss_pred hhhccCccCCcccccCCCceEEEEEeC-CCcEEEEEecC
Q 035932 383 EKATDNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSK 420 (433)
Q Consensus 383 ~~aT~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~ 420 (433)
++..++|.-.++||+|.|.+||+++-. .++..|||+|.
T Consensus 69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~ 107 (604)
T KOG0592|consen 69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLD 107 (604)
T ss_pred cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhh
Confidence 344556666889999999999999864 47899999994
No 139
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.92 E-value=1.3 Score=43.95 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=28.5
Q ss_pred ccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.+++...+.||+|.||+||.|.- ..|+.||||.++.
T Consensus 16 ~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 16 IGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred cCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence 34455578999999999999965 5689999996644
No 140
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=81.72 E-value=0.96 Score=46.87 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=29.2
Q ss_pred CccCCcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.|++ +=|+.++-|.||+|+|++|+.||||..+-+
T Consensus 127 eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPg 160 (517)
T COG0661 127 EFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPG 160 (517)
T ss_pred HcCC-CchhhhhHhhheeEEecCCCEEEEEecCCC
Confidence 4543 568899999999999999999999999765
No 141
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=81.67 E-value=0.91 Score=45.28 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=27.9
Q ss_pred cCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 390 NVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 390 ~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
....+||.|.-++||+|.- +-+..||||++...
T Consensus 29 eL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLE 62 (516)
T KOG0582|consen 29 ELQEVIGVGASAVVYLARCIPTNEVVAIKIINLE 62 (516)
T ss_pred eEEEEEeccceeEeeeeeecccCCEEEEEEeehh
Confidence 3357899999999999986 67899999999654
No 142
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=81.47 E-value=1.3 Score=43.15 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=27.1
Q ss_pred CccCCcccccCCCceEEEEEeCCC--cEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLTDG--RIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~dg--~~VAVK~l~~~ 422 (433)
.|.....||+|+||.||++.-.+. ..+|+|.-...
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~ 55 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKE 55 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEec
Confidence 566678999999999999996443 46888876543
No 143
>PHA03207 serine/threonine kinase US3; Provisional
Probab=81.31 E-value=1.4 Score=44.00 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.5
Q ss_pred CccCCcccccCCCceEEEEEeCC---CcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLTD---GRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~d---g~~VAVK~l~~~ 422 (433)
.|.....||+|+||.||++...+ +..||||.+...
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~ 130 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG 130 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc
Confidence 35556789999999999998633 568999998643
No 144
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=80.89 E-value=1.1 Score=41.25 Aligned_cols=36 Identities=11% Similarity=-0.108 Sum_probs=29.6
Q ss_pred ccCccCCcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.+++...++||+|+||.||.... ++..+|||.++..
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~ 65 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPK 65 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechh
Confidence 35677789999999999998655 5778999999754
No 145
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=80.54 E-value=0.88 Score=28.65 Aligned_cols=22 Identities=36% Similarity=0.759 Sum_probs=15.9
Q ss_pred CceecCCCCcceEEecCCCCcCCC
Q 035932 240 TNLTYSENGQGYRCVCQPGYKGNP 263 (433)
Q Consensus 240 ~~C~~~~~~~gy~C~C~~g~~g~~ 263 (433)
..|.+..+ +|+|.|+.||...+
T Consensus 10 h~C~~~~g--~~~C~C~~Gy~L~~ 31 (36)
T PF14670_consen 10 HICVNTPG--SYRCSCPPGYKLAE 31 (36)
T ss_dssp SEEEEETT--SEEEE-STTEEE-T
T ss_pred CCCccCCC--ceEeECCCCCEECc
Confidence 56777755 89999999998665
No 146
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=80.01 E-value=1.7 Score=41.92 Aligned_cols=32 Identities=34% Similarity=0.617 Sum_probs=27.4
Q ss_pred CccCCcccccCCCceEEEEE-eCCCcEEEEEec
Q 035932 388 NYNVSRILGQGGQGTVFKGM-LTDGRIVAVKKS 419 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~-L~dg~~VAVK~l 419 (433)
+|.-.+.||+|.||..+.|+ |-++.+||||--
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE 61 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE 61 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEec
Confidence 56667899999999999997 457899999976
No 147
>PF14380 WAK_assoc: Wall-associated receptor kinase C-terminal
Probab=79.57 E-value=2.6 Score=32.85 Aligned_cols=44 Identities=18% Similarity=0.600 Sum_probs=31.1
Q ss_pred cccCCCCcceEEeeeecCC--CCCC-CCCceecCCCCcceEEecCCC
Q 035932 215 HFSDKSSSNVTVEWMIKDE--ESCG-DNTNLTYSENGQGYRCVCQPG 258 (433)
Q Consensus 215 ~~~~~~~~~~~l~w~~~~~--~~C~-~~~~C~~~~~~~gy~C~C~~g 258 (433)
++....+.+++|+|.+... ..|. .++.|........+.|.|+.|
T Consensus 47 ~~~~~L~~GF~L~w~~~~~~C~~C~~SgG~Cgy~~~~~~f~C~C~dg 93 (94)
T PF14380_consen 47 NYEEVLKKGFELEWNADSGDCRECEASGGRCGYDSNSEQFTCFCSDG 93 (94)
T ss_pred HHHHHHhcCcEEEEeCCCCcCcChhcCCCEeCCCCCCceEEEECCCC
Confidence 3444566899999997332 4677 788887665555788888765
No 148
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=78.57 E-value=2 Score=42.54 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=25.7
Q ss_pred CcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 392 SRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.+.||+|+||.|-+|.= ..|..||||.++.
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~k 207 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINK 207 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeeeh
Confidence 47899999999999976 4589999999954
No 149
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=78.05 E-value=0.51 Score=41.26 Aligned_cols=63 Identities=27% Similarity=0.571 Sum_probs=40.7
Q ss_pred CCceecCCCCcceEEecCCCCcCCCCCCCeecccCc----CCCCC--CCccCCCC-----CCeeEeCCCCCCCCCc
Q 035932 239 NTNLTYSENGQGYRCVCQPGYKGNPYLGCHDIDECN----EGYPC--EGTCKNTP-----GSYACQCPIGMHGDGT 303 (433)
Q Consensus 239 ~~~C~~~~~~~gy~C~C~~g~~g~~~~~C~di~eC~----~~~~C--~~~C~n~~-----gs~~C~C~~g~~g~~~ 303 (433)
|+......+ +|.|.|.+||....-..|+...+|. ...+| .+.|.+.. ..|.|.|-.||.....
T Consensus 10 NG~LiQMSN--HfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~ 83 (197)
T PF06247_consen 10 NGYLIQMSN--HFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG 83 (197)
T ss_dssp TEEEEEESS--EEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS
T ss_pred CCEEEEccC--ceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC
Confidence 344555555 8999999999754433577777886 24678 37888665 6899999999986643
No 150
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=77.51 E-value=2.9 Score=25.49 Aligned_cols=25 Identities=32% Similarity=0.716 Sum_probs=20.0
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNP 263 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~ 263 (433)
.|.++++|... ..+|.|.+||.|..
T Consensus 7 ~C~~~G~C~~~----~g~C~C~~g~~G~~ 31 (32)
T PF07974_consen 7 ICSGHGTCVSP----CGRCVCDSGYTGPD 31 (32)
T ss_pred ccCCCCEEeCC----CCEEECCCCCcCCC
Confidence 58889999754 35899999999864
No 151
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.51 E-value=0.49 Score=49.15 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=31.4
Q ss_pred cccccCCCceEEEEEeCC-CcEEEEEecCCcCccchhhhccC
Q 035932 393 RILGQGGQGTVFKGMLTD-GRIVAVKKSKSVHESNVEQFINE 433 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~~~~~~eF~~E 433 (433)
-.||.|+||.|||++-.+ +...|-|.+...+..+.++|+-|
T Consensus 38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVE 79 (1187)
T KOG0579|consen 38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVE 79 (1187)
T ss_pred hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhh
Confidence 468999999999999765 34557777777677777887754
No 152
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=76.17 E-value=0.57 Score=46.82 Aligned_cols=34 Identities=35% Similarity=0.638 Sum_probs=28.8
Q ss_pred cCccCCcccccCCCceEEEEEeCC-CcEEEEEecC
Q 035932 387 DNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSK 420 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~ 420 (433)
+.|..-++||+||||.||--..++ |...|.|+|.
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~ 219 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLD 219 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHH
Confidence 458888999999999999888855 7888999883
No 153
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.68 E-value=2.3 Score=43.61 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=28.8
Q ss_pred ccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcCcc
Q 035932 389 YNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVHES 425 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~~~ 425 (433)
|..-..||+|..|.||-+.- ..+..||||++....+.
T Consensus 275 y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~ 312 (550)
T KOG0578|consen 275 YTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQP 312 (550)
T ss_pred hcchhhhccccccceeeeeeccCCceEEEEEEEeccCC
Confidence 33346899999999998875 56889999999765443
No 154
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=73.97 E-value=1 Score=46.16 Aligned_cols=42 Identities=31% Similarity=0.517 Sum_probs=33.8
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCc--CccchhhhccC
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSV--HESNVEQFINE 433 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~--~~~~~~eF~~E 433 (433)
...||+||...|||..-.|.+.+|+|+.... +.+..+.|.+|
T Consensus 366 lk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nE 409 (677)
T KOG0596|consen 366 LKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNE 409 (677)
T ss_pred HHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHH
Confidence 3679999999999999988999999998543 55556667665
No 155
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=73.09 E-value=1.8 Score=46.33 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=24.4
Q ss_pred cChhhHhhhccCccCCcccccCCCceEEEEEe
Q 035932 377 FTSKDLEKATDNYNVSRILGQGGQGTVFKGML 408 (433)
Q Consensus 377 f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L 408 (433)
+-.+|++.+.+ ....+.||+|+||+||.|.-
T Consensus 985 yv~deWe~~r~-it~~relg~gsfg~Vy~g~~ 1015 (1025)
T KOG4258|consen 985 YVPDEWEVSRE-ITLGRELGQGSFGMVYEGNA 1015 (1025)
T ss_pred CChhHHHHHHH-HhhhhhhccCccceEEEecC
Confidence 44567766655 66679999999999999975
No 156
>PF15102 TMEM154: TMEM154 protein family
Probab=71.40 E-value=2.2 Score=35.88 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=6.8
Q ss_pred cceecChhhHhhh
Q 035932 373 KTKLFTSKDLEKA 385 (433)
Q Consensus 373 ~~~~f~~~eL~~a 385 (433)
....+.++||-+-
T Consensus 121 svmeiEmeeldkw 133 (146)
T PF15102_consen 121 SVMEIEMEELDKW 133 (146)
T ss_pred chhhhhHHHHHhH
Confidence 3344566666543
No 157
>PHA02887 EGF-like protein; Provisional
Probab=70.43 E-value=3.3 Score=33.22 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCC-CCccCCC--CCCeeEeCCCCCCCCCcc
Q 035932 277 YPC-EGTCKNT--PGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 277 ~~C-~~~C~n~--~gs~~C~C~~g~~g~~~~ 304 (433)
.-| +|.|... .....|.|+.||.|..|+
T Consensus 92 ~YCiHG~C~yI~dL~epsCrC~~GYtG~RCE 122 (126)
T PHA02887 92 DFCINGECMNIIDLDEKFCICNKGYTGIRCD 122 (126)
T ss_pred CEeeCCEEEccccCCCceeECCCCcccCCCC
Confidence 345 5777544 366899999999999875
No 158
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=69.89 E-value=1.5 Score=41.86 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=24.7
Q ss_pred CcccccCCCceEEEEEeCC---Cc--EEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGMLTD---GR--IVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~d---g~--~VAVK~l~~~ 422 (433)
...||+|.+|.|||++-.+ .+ ..|||+++..
T Consensus 29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~ 64 (438)
T KOG0666|consen 29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE 64 (438)
T ss_pred cceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence 4679999999999997633 23 6899999765
No 159
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=69.52 E-value=3.4 Score=35.07 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=6.5
Q ss_pred EEeeeeeeehhhhH
Q 035932 314 IVAGCVVVLGLLFL 327 (433)
Q Consensus 314 ~~i~~~i~~~~~lv 327 (433)
+++++++++++.++
T Consensus 50 IVIGvVVGVGg~il 63 (154)
T PF04478_consen 50 IVIGVVVGVGGPIL 63 (154)
T ss_pred EEEEEEecccHHHH
Confidence 44555555444333
No 160
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=69.31 E-value=3.3 Score=38.91 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=37.8
Q ss_pred eecChhhHhhhc--cCccCCcccccCCCceEEEEEeC-CCcEEEEEecCCcCccchhhhccC
Q 035932 375 KLFTSKDLEKAT--DNYNVSRILGQGGQGTVFKGMLT-DGRIVAVKKSKSVHESNVEQFINE 433 (433)
Q Consensus 375 ~~f~~~eL~~aT--~~F~~~~~IG~G~fG~VYKG~L~-dg~~VAVK~l~~~~~~~~~eF~~E 433 (433)
+.++.+||++.+ +-|+..+.||+|.||..-...-+ ..+.+++|-+..- ....++|.+|
T Consensus 10 h~I~~~el~kv~l~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p-~tt~~dF~rE 70 (378)
T KOG1345|consen 10 HLIPMEELKKVDLEDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRP-QTTQADFVRE 70 (378)
T ss_pred cccccccccccchhhhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcc-hhhHHHHHHH
Confidence 334445554443 34566788999999998877663 4567888887542 2345677765
No 161
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=68.19 E-value=5.6 Score=41.35 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=28.8
Q ss_pred CccCCcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 388 NYNVSRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 388 ~F~~~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.|++ +-||.-..|.|||++|++|..||||+-+..
T Consensus 163 ~f~~-~piaaASlaQVhrA~L~~G~~VaVKVQ~P~ 196 (538)
T KOG1235|consen 163 EFDE-EPIAAASLAQVHRARLKNGEDVAVKVQHPG 196 (538)
T ss_pred hcCc-chhhhcchhheEEEEecCCCEEEEEecCcC
Confidence 3543 578889999999999999999999998754
No 162
>PHA03210 serine/threonine kinase US3; Provisional
Probab=68.10 E-value=1.5 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=19.7
Q ss_pred ccCccCCcccccCCCceEEEEEeC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLT 409 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~ 409 (433)
.+.|...+.||+|+||+||++.+.
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEe
Confidence 355666789999999999998764
No 163
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.67 E-value=3.8 Score=43.47 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=25.3
Q ss_pred CcccccCCCceEEEEEeCC-CcEEEEEecCCcC
Q 035932 392 SRILGQGGQGTVFKGMLTD-GRIVAVKKSKSVH 423 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~ 423 (433)
.-+||+|.||+||-|+-.+ ...+|||-+.+.+
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekd 612 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKD 612 (1226)
T ss_pred eEEeecCceeEEEeeccccceeEEEeeeccccc
Confidence 3479999999999998644 3468999986653
No 164
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=67.31 E-value=1.2 Score=44.34 Aligned_cols=30 Identities=40% Similarity=0.575 Sum_probs=24.5
Q ss_pred cccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 393 RILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
++||+|||..|||+.- ...+-||||.-...
T Consensus 469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlN 499 (775)
T KOG1151|consen 469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLN 499 (775)
T ss_pred HHhccccHHHHHHhcccchhheeeEeeehhc
Confidence 6789999999999973 55788999986543
No 165
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=66.93 E-value=8.4 Score=39.82 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=9.6
Q ss_pred eEeCCCCCCCCCcc
Q 035932 291 ACQCPIGMHGDGTV 304 (433)
Q Consensus 291 ~C~C~~g~~g~~~~ 304 (433)
.|.|..||.|..+.
T Consensus 328 ~C~C~~Gy~G~~C~ 341 (525)
T KOG1225|consen 328 ECLCDEGYTGELCI 341 (525)
T ss_pred ceEeCCCCcCCccc
Confidence 67777777776654
No 166
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=66.67 E-value=5.4 Score=43.27 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=35.1
Q ss_pred ChhhHhhhccCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCcC
Q 035932 378 TSKDLEKATDNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSVH 423 (433)
Q Consensus 378 ~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~~ 423 (433)
.++-|-..++-|-..++||.|.+|.|||+.= .+|+.+|||.+.-..
T Consensus 10 ~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~ 56 (953)
T KOG0587|consen 10 DLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE 56 (953)
T ss_pred chhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc
Confidence 3444555566666678999999999999975 678999999986553
No 167
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=66.54 E-value=5.5 Score=35.19 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.4
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCcC
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSVH 423 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~~ 423 (433)
..+|++|.+|.||.|.+. |..||+|+=+..+
T Consensus 27 ~~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds 57 (201)
T COG2112 27 EKELAKGTTSVVYLGEWR-GGEVALKVRRRDS 57 (201)
T ss_pred hhhhhcccccEEEEeecc-CceEEEEEecCCc
Confidence 578999999999999995 4588998876543
No 168
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=65.95 E-value=5.6 Score=31.90 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=6.5
Q ss_pred CeeEeCCCCCCC
Q 035932 289 SYACQCPIGMHG 300 (433)
Q Consensus 289 s~~C~C~~g~~g 300 (433)
+..|.|++||..
T Consensus 97 ~~~C~Cl~GF~P 108 (110)
T PF00954_consen 97 SPKCSCLPGFEP 108 (110)
T ss_pred CCceECCCCcCC
Confidence 344666666543
No 169
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=65.21 E-value=2.9 Score=41.43 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=26.2
Q ss_pred CcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
-+.||.|..|+||...+.+ +...|+|++...
T Consensus 82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~ 113 (459)
T KOG0610|consen 82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKE 113 (459)
T ss_pred HHHcCCCCceeEEEEEecCCCceEEEEEecHH
Confidence 4689999999999999966 478999999543
No 170
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=62.87 E-value=7.5 Score=43.22 Aligned_cols=54 Identities=33% Similarity=0.809 Sum_probs=36.0
Q ss_pred ceEE-ecCCCCcCCCCCCCeecccCcCCCCCC----------CccC--CCCCCeeEeCCCCCCCCCcccc
Q 035932 250 GYRC-VCQPGYKGNPYLGCHDIDECNEGYPCE----------GTCK--NTPGSYACQCPIGMHGDGTVGC 306 (433)
Q Consensus 250 gy~C-~C~~g~~g~~~~~C~di~eC~~~~~C~----------~~C~--n~~gs~~C~C~~g~~g~~~~~c 306 (433)
||.| .|..||.|+|-+|-. ..| ++-||. ..|. +......|.|..||.|..|+.|
T Consensus 884 G~~CdrCl~GyyGdP~lg~g--~~C-rPCpCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~C 950 (1758)
T KOG0994|consen 884 GHSCDRCLDGYYGDPRLGSG--IGC-RPCPCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEIC 950 (1758)
T ss_pred ccchhhhhccccCCcccCCC--CCC-CCCCCCCCCccchhccccccccccccceeeecccCccccchhhh
Confidence 8888 599999999977211 123 344441 1342 3345678999999999887644
No 171
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=61.82 E-value=4.1 Score=38.70 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=27.1
Q ss_pred ccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 389 YNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
|.....||.|.||.|...+. ..|...|+|+|+..
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~ 80 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQ 80 (355)
T ss_pred hhheeeeccCccceEEEEEEccCCceeehhhcCHH
Confidence 33357899999999998887 45788999999643
No 172
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=61.79 E-value=3.3 Score=41.02 Aligned_cols=30 Identities=33% Similarity=0.417 Sum_probs=25.7
Q ss_pred cccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 393 RILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
+.||+|.||.|-++.- ..|+.||||.++..
T Consensus 59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKd 89 (668)
T KOG0611|consen 59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKD 89 (668)
T ss_pred HHhcCCcccceeehhhccCCcEeehhhhhhh
Confidence 4699999999999976 56999999998654
No 173
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=61.00 E-value=3.9 Score=25.79 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=18.7
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGN 262 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~ 262 (433)
.|..|+.|....++ .+.|.|..||..+
T Consensus 6 ~cP~NA~C~~~~dG-~eecrCllgyk~~ 32 (37)
T PF12946_consen 6 KCPANAGCFRYDDG-SEECRCLLGYKKV 32 (37)
T ss_dssp ---TTEEEEEETTS-EEEEEE-TTEEEE
T ss_pred cCCCCcccEEcCCC-CEEEEeeCCcccc
Confidence 57789999987754 6899999999743
No 174
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=60.97 E-value=2 Score=47.73 Aligned_cols=42 Identities=19% Similarity=0.386 Sum_probs=32.5
Q ss_pred hhHhhhccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCC
Q 035932 380 KDLEKATDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKS 421 (433)
Q Consensus 380 ~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~ 421 (433)
.+|.--.++|....+||+|+||.|.-.+... +.+.|.|+|..
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK 110 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNK 110 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhH
Confidence 3444445667667899999999999888844 67889999955
No 175
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=60.58 E-value=10 Score=35.76 Aligned_cols=31 Identities=35% Similarity=0.512 Sum_probs=26.6
Q ss_pred cccccCCCceEEEEEeCC-CcEEEEEecCCcC
Q 035932 393 RILGQGGQGTVFKGMLTD-GRIVAVKKSKSVH 423 (433)
Q Consensus 393 ~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~ 423 (433)
..||.|.-|.|.|.+... |..+|||.++...
T Consensus 98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~ 129 (391)
T KOG0983|consen 98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTG 129 (391)
T ss_pred HhhcCCCccceEEEEEcccceEEEEEeecccC
Confidence 479999999999999865 7899999997653
No 176
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.96 E-value=4.4 Score=38.01 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=25.7
Q ss_pred CcccccCCCceEEEEEe-CCCcEEEEEecCC
Q 035932 392 SRILGQGGQGTVFKGML-TDGRIVAVKKSKS 421 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~ 421 (433)
.+-||-|.||.|+.-+- +||+.||.||+-.
T Consensus 58 DRPIGYGAFGVVWsVTDPRdgrrvalkK~pn 88 (449)
T KOG0664|consen 58 DRPIGYGAFGVVWSVTDPRSGKRVALKKMPN 88 (449)
T ss_pred CCcccccceeEEEeccCCCCccchhHhhcch
Confidence 57899999999998776 5699999999843
No 177
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium. Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.
Probab=59.89 E-value=1.5 Score=38.45 Aligned_cols=67 Identities=27% Similarity=0.648 Sum_probs=34.9
Q ss_pred CCCCCCceecCCC-CcceEEecCCCCcCCCCCCCee--cccCcCCCCC--CCccCCCCCCeeEeCCCCCCCCCcc
Q 035932 235 SCGDNTNLTYSEN-GQGYRCVCQPGYKGNPYLGCHD--IDECNEGYPC--EGTCKNTPGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 235 ~C~~~~~C~~~~~-~~gy~C~C~~g~~g~~~~~C~d--i~eC~~~~~C--~~~C~n~~gs~~C~C~~g~~g~~~~ 304 (433)
.|. .+.|+-... .....|+|..|+.-..-.-|.- -.+|. --| +..|....+-|.|.|..++.+....
T Consensus 94 ~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~--LKCk~nE~CK~~~~~Y~C~~~~~~~~~~~~ 165 (197)
T PF06247_consen 94 DCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCS--LKCKENEECKLVDGYYKCVCKEGFPGDGEG 165 (197)
T ss_dssp --T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE----------TTTEEEEEETTEEEEEE-TT-EEETTT
T ss_pred ecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCcccee--eecCCCcceeeeCcEEEeecCCCCCCCCCc
Confidence 355 677864332 2366999999998111112321 11221 112 3577888899999999998876554
No 178
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=59.69 E-value=0.99 Score=33.68 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.0
Q ss_pred eecChhhHhhhccCcc
Q 035932 375 KLFTSKDLEKATDNYN 390 (433)
Q Consensus 375 ~~f~~~eL~~aT~~F~ 390 (433)
..+||||..+|...|.
T Consensus 55 DP~TYEDP~qAV~eFA 70 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFA 70 (75)
T ss_dssp -GGGSSSHHHHHHHCS
T ss_pred CcccccCHHHHHHHHH
Confidence 3489999999998884
No 179
>smart00051 DSL delta serrate ligand.
Probab=59.40 E-value=16 Score=26.23 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=27.5
Q ss_pred ceEEecCCCCcCCCCC-CCeecccCcCCCCCCCccCCCCCCeeEeCCCCCCCCCc
Q 035932 250 GYRCVCQPGYKGNPYL-GCHDIDECNEGYPCEGTCKNTPGSYACQCPIGMHGDGT 303 (433)
Q Consensus 250 gy~C~C~~g~~g~~~~-~C~di~eC~~~~~C~~~C~n~~gs~~C~C~~g~~g~~~ 303 (433)
.++-.|.++|.|..+. .|...|.+.. +..|.. . -.|.|++|+.|..+
T Consensus 16 ~~rv~C~~~~yG~~C~~~C~~~~d~~~----~~~Cd~-~--G~~~C~~Gw~G~~C 63 (63)
T smart00051 16 QIRVTCDENYYGEGCNKFCRPRDDFFG----HYTCDE-N--GNKGCLEGWMGPYC 63 (63)
T ss_pred EEEeeCCCCCcCCccCCEeCcCccccC----CccCCc-C--CCEecCCCCcCCCC
Confidence 3555688888888765 4443332221 234532 2 25778899988753
No 180
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=58.25 E-value=2.5 Score=34.40 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=4.3
Q ss_pred cCCCCcCCCCC
Q 035932 255 CQPGYKGNPYL 265 (433)
Q Consensus 255 C~~g~~g~~~~ 265 (433)
|+.|+..++.+
T Consensus 36 Cp~G~sWs~dL 46 (129)
T PF12191_consen 36 CPRGSSWSADL 46 (129)
T ss_dssp S-SSEEEETTT
T ss_pred CCCCCcCcccc
Confidence 44444444433
No 181
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=58.06 E-value=4.1 Score=42.92 Aligned_cols=36 Identities=33% Similarity=0.516 Sum_probs=28.4
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
++|..-.++|.|.+|.|||++- ..+...|||.+|..
T Consensus 15 ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLe 51 (829)
T KOG0576|consen 15 DDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLE 51 (829)
T ss_pred cchhheeeecCCcccchhhhcccccCchhhheeeecc
Confidence 3444457899999999999985 44788999988754
No 182
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=57.34 E-value=14 Score=38.22 Aligned_cols=45 Identities=31% Similarity=0.742 Sum_probs=29.2
Q ss_pred EEecCCCCcCCCCCCCeecccCcCCCCCCCccCCCCCCeeEeCCCCCCCCCcc
Q 035932 252 RCVCQPGYKGNPYLGCHDIDECNEGYPCEGTCKNTPGSYACQCPIGMHGDGTV 304 (433)
Q Consensus 252 ~C~C~~g~~g~~~~~C~di~eC~~~~~C~~~C~n~~gs~~C~C~~g~~g~~~~ 304 (433)
+|.|++||.|..+. .-.| +..|++.-.+..| .|.|++||.|..++
T Consensus 266 ~CIC~~Gf~G~dC~----e~~C--p~~cs~~g~~~~g--~CiC~~g~~G~dCs 310 (525)
T KOG1225|consen 266 RCICPPGFTGDDCD----ELVC--PVDCSGGGVCVDG--ECICNPGYSGKDCS 310 (525)
T ss_pred eEeCCCCCcCCCCC----cccC--CcccCCCceecCC--EeecCCCccccccc
Confidence 79999999998853 1224 2225322222233 89999999998874
No 183
>PHA02887 EGF-like protein; Provisional
Probab=57.26 E-value=11 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPY 264 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~ 264 (433)
-|- ++.|....+.....|.|..||.|..+
T Consensus 93 YCi-HG~C~yI~dL~epsCrC~~GYtG~RC 121 (126)
T PHA02887 93 FCI-NGECMNIIDLDEKFCICNKGYTGIRC 121 (126)
T ss_pred Eee-CCEEEccccCCCceeECCCCcccCCC
Confidence 365 57888777767899999999999874
No 184
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=56.72 E-value=16 Score=29.28 Aligned_cols=36 Identities=28% Similarity=0.636 Sum_probs=23.5
Q ss_pred eEEeeeecCC-----CCCCCCCceecCCCCcceEEecCCCCcCC
Q 035932 224 VTVEWMIKDE-----ESCGDNTNLTYSENGQGYRCVCQPGYKGN 262 (433)
Q Consensus 224 ~~l~w~~~~~-----~~C~~~~~C~~~~~~~gy~C~C~~g~~g~ 262 (433)
-.+.|..+.+ ..|..++.|... . ...|.|.+||+-+
T Consensus 69 W~~~~~~p~d~Cd~y~~CG~~g~C~~~-~--~~~C~Cl~GF~P~ 109 (110)
T PF00954_consen 69 WSVFWSAPKDQCDVYGFCGPNGICNSN-N--SPKCSCLPGFEPK 109 (110)
T ss_pred EEEEEEecccCCCCccccCCccEeCCC-C--CCceECCCCcCCC
Confidence 3445666543 268888888432 2 4569999999743
No 185
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=55.11 E-value=3.9 Score=29.20 Aligned_cols=22 Identities=36% Similarity=0.612 Sum_probs=0.0
Q ss_pred eeeeeeehhhhHhhhhheeeee
Q 035932 316 AGCVVVLGLLFLLLIGLWWLYK 337 (433)
Q Consensus 316 i~~~i~~~~~lvl~i~~~~~~~ 337 (433)
++.+.++++++.++++++++++
T Consensus 14 vIaG~Vvgll~ailLIlf~iyR 35 (64)
T PF01034_consen 14 VIAGGVVGLLFAILLILFLIYR 35 (64)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443334444444443
No 186
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=54.25 E-value=6.7 Score=37.75 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=31.8
Q ss_pred ChhhHhhhccCccCCcccccCCCceEEEEE-eCCCcEEEEEecCCc
Q 035932 378 TSKDLEKATDNYNVSRILGQGGQGTVFKGM-LTDGRIVAVKKSKSV 422 (433)
Q Consensus 378 ~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~-L~dg~~VAVK~l~~~ 422 (433)
+++|+-+-| +++||+|+++.|--.+ +..|...|||.+...
T Consensus 74 ~F~d~YkLt-----~e~LGeGAyasVqtcv~i~t~~EYAVKiidKq 114 (463)
T KOG0607|consen 74 KFEDMYKLT-----SELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ 114 (463)
T ss_pred hHHHHHHhH-----HHHhcCccceeeeeeeeeccchhhhhhhhhcC
Confidence 467787777 5789999999997554 457889999999654
No 187
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=53.17 E-value=11 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=22.5
Q ss_pred CCCCCCceecCCCCcceEEecCCCCcCCCC
Q 035932 235 SCGDNTNLTYSENGQGYRCVCQPGYKGNPY 264 (433)
Q Consensus 235 ~C~~~~~C~~~~~~~gy~C~C~~g~~g~~~ 264 (433)
-|-++ .|....+...+.|.|..||.|..+
T Consensus 52 YClHG-~C~yI~dl~~~~CrC~~GYtGeRC 80 (139)
T PHA03099 52 YCLHG-DCIHARDIDGMYCRCSHGYTGIRC 80 (139)
T ss_pred EeECC-EEEeeccCCCceeECCCCcccccc
Confidence 35554 787666666899999999999884
No 188
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=51.52 E-value=1.8 Score=34.21 Aligned_cols=31 Identities=26% Similarity=0.744 Sum_probs=19.4
Q ss_pred ccCc-CCCCC--CCccCCC-----CCCeeEeCCCCCCCC
Q 035932 271 DECN-EGYPC--EGTCKNT-----PGSYACQCPIGMHGD 301 (433)
Q Consensus 271 ~eC~-~~~~C--~~~C~n~-----~gs~~C~C~~g~~g~ 301 (433)
++|. ..+.| +|.|.+. ..=|.|.|.+.....
T Consensus 6 ~aC~~~Tn~CsgHG~C~~~~~~~~~~C~~C~C~~T~~~~ 44 (103)
T PF12955_consen 6 DACENATNNCSGHGSCVKKYGSGGGDCFACKCKPTVVKT 44 (103)
T ss_pred HHHHHhccCCCCCceEeeccCCCccceEEEEeecccccc
Confidence 4454 45666 4777655 245889998865543
No 189
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=51.24 E-value=12 Score=39.05 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=32.1
Q ss_pred hhhccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 383 EKATDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 383 ~~aT~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
..-+.++.....||+|.|+.|.-++-.. ++.||||.++..
T Consensus 52 ~~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt 92 (596)
T KOG0586|consen 52 SNSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKT 92 (596)
T ss_pred cccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhc
Confidence 3445667777899999999999998744 889999988654
No 190
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=50.99 E-value=18 Score=32.73 Aligned_cols=32 Identities=44% Similarity=0.664 Sum_probs=27.2
Q ss_pred cCccCCcccccCCC-ceEEEEEeCCCcEEEEEec
Q 035932 387 DNYNVSRILGQGGQ-GTVFKGMLTDGRIVAVKKS 419 (433)
Q Consensus 387 ~~F~~~~~IG~G~f-G~VYKG~L~dg~~VAVK~l 419 (433)
.+|.--+.||.|.. |.|||..+ +|...|+|..
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf 69 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLF 69 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEe
Confidence 44544688999999 99999999 7889999994
No 191
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=49.63 E-value=7.4 Score=38.24 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=33.2
Q ss_pred eecChhhHhhhccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCcC
Q 035932 375 KLFTSKDLEKATDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSVH 423 (433)
Q Consensus 375 ~~f~~~eL~~aT~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~~ 423 (433)
-+|...|.+ ++.|.....+|+|.||.|-+-.-.. +..||||.++...
T Consensus 79 ~v~~~gD~l--~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~ 126 (415)
T KOG0671|consen 79 YVYQVGDIL--TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVD 126 (415)
T ss_pred EEEEecccc--ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHH
Confidence 345444544 4455556789999999999876532 6899999997653
No 192
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=49.57 E-value=19 Score=22.20 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=13.7
Q ss_pred CCCCccCCCCCCeeEeCCCCCCCCC
Q 035932 278 PCEGTCKNTPGSYACQCPIGMHGDG 302 (433)
Q Consensus 278 ~C~~~C~n~~gs~~C~C~~g~~g~~ 302 (433)
.|.+.|.... ...|.||.||..+.
T Consensus 7 ~CpA~CDpn~-~~~C~CPeGyIlde 30 (34)
T PF09064_consen 7 ECPADCDPNS-PGQCFCPEGYILDE 30 (34)
T ss_pred cCCCccCCCC-CCceeCCCceEecC
Confidence 3445554322 23788888886553
No 193
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=48.79 E-value=8.2 Score=15.56 Aligned_cols=6 Identities=67% Similarity=1.785 Sum_probs=4.0
Q ss_pred ccccCC
Q 035932 42 PYPFGI 47 (433)
Q Consensus 42 ~yPFgi 47 (433)
||-||+
T Consensus 3 py~fgl 8 (8)
T PF08261_consen 3 PYSFGL 8 (8)
T ss_pred cccccC
Confidence 677764
No 194
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.96 E-value=1.3 Score=41.11 Aligned_cols=28 Identities=43% Similarity=0.590 Sum_probs=23.3
Q ss_pred CcccccCCCceEEEEEeCC-CcEEEEEec
Q 035932 392 SRILGQGGQGTVFKGMLTD-GRIVAVKKS 419 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~d-g~~VAVK~l 419 (433)
...||+|.||.|||+.-.+ |+.||+|+.
T Consensus 22 ~~kigqGtfgeVFkAr~~n~~kkvalkkv 50 (376)
T KOG0669|consen 22 LAKIGQGTFGEVFKARSKNTGKKVALKKV 50 (376)
T ss_pred HHhcCCchHHHHHHHhhcCccchhHHHHH
Confidence 3579999999999998855 567899875
No 195
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.03 E-value=11 Score=36.51 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=27.5
Q ss_pred cCccCCcccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 387 DNYNVSRILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 387 ~~F~~~~~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
++|+--++||+|.||.|-.-.= ..|...|||.|+..
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKe 204 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKE 204 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhh
Confidence 4566678999999999975543 34788999999654
No 196
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=44.45 E-value=3.9 Score=39.15 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.2
Q ss_pred eehhhhhhhhhhh
Q 035932 337 KFIKRRRKIKRKQ 349 (433)
Q Consensus 337 ~~~~~rk~~~~~~ 349 (433)
+++||+++.+.+.
T Consensus 279 LRYRRKKKmkKKl 291 (299)
T PF02009_consen 279 LRYRRKKKMKKKL 291 (299)
T ss_pred HHHHHHhhhhHHH
Confidence 3344434444333
No 197
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=42.76 E-value=29 Score=41.21 Aligned_cols=55 Identities=38% Similarity=0.845 Sum_probs=35.7
Q ss_pred ceEE-ecCCCCcCCCCCCCeecccCcCCCCC--CCccCCC--CCCeeEe-CCCCCCCCCccccc
Q 035932 250 GYRC-VCQPGYKGNPYLGCHDIDECNEGYPC--EGTCKNT--PGSYACQ-CPIGMHGDGTVGCR 307 (433)
Q Consensus 250 gy~C-~C~~g~~g~~~~~C~di~eC~~~~~C--~~~C~n~--~gs~~C~-C~~g~~g~~~~~c~ 307 (433)
|-+| +|..||.|++..+= .-| | .+-+| ++.|..+ .....|. ||.||.|..++.|.
T Consensus 755 G~~C~~C~~GfYg~~~~~~-~~d-C-~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~ 815 (1705)
T KOG1836|consen 755 GGQCAQCVDGFYGLPDLGT-SGD-C-QPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECA 815 (1705)
T ss_pred CCchhhhcCCCCCccccCC-CCC-C-ccCCCCCChhhcCcCcccceecCCCCCCCcccccccCC
Confidence 4555 58999999987610 111 5 33445 3555544 3677898 99999999887553
No 198
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=40.98 E-value=23 Score=33.41 Aligned_cols=22 Identities=27% Similarity=0.043 Sum_probs=12.1
Q ss_pred ceeeeEEeeeeeeehhhhHhhh
Q 035932 309 FRITTIVAGCVVVLGLLFLLLI 330 (433)
Q Consensus 309 ~~~~~~~i~~~i~~~~~lvl~i 330 (433)
.+...|.++++.+.|++++.++
T Consensus 208 ~~~~~W~iv~g~~~G~~~L~ll 229 (278)
T PF06697_consen 208 KRSWWWKIVVGVVGGVVLLGLL 229 (278)
T ss_pred CcceeEEEEEEehHHHHHHHHH
Confidence 3444566666666666444433
No 199
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=40.16 E-value=31 Score=32.74 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=27.7
Q ss_pred CcccccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 392 SRILGQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.+.||.|.=+.||.|..++|..+|||--+..
T Consensus 96 G~~IGvGKEsdVY~~~~~~g~~~~vKfHR~G 126 (304)
T COG0478 96 GTKIGVGKESDVYVAIDPKGRKVAVKFHRLG 126 (304)
T ss_pred ccccccCccceEEEEECCCCCEEEEEEeecC
Confidence 5789999999999999999999999976554
No 200
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=36.21 E-value=45 Score=36.75 Aligned_cols=18 Identities=33% Similarity=0.752 Sum_probs=11.9
Q ss_pred eEEecCCCCcCCCCC-CCe
Q 035932 251 YRCVCQPGYKGNPYL-GCH 268 (433)
Q Consensus 251 y~C~C~~g~~g~~~~-~C~ 268 (433)
.+|.|..||.-+... +|.
T Consensus 682 ~~C~C~~g~~p~~~~~~C~ 700 (800)
T PTZ00214 682 RRCWCERGFLPALDRSGCV 700 (800)
T ss_pred ceeEecCCcccccCCCccc
Confidence 479999999744433 443
No 201
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=35.19 E-value=44 Score=30.87 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.0
Q ss_pred Ccccc-cCCCceEEEEEeCCCcEEEEEecCC
Q 035932 392 SRILG-QGGQGTVFKGMLTDGRIVAVKKSKS 421 (433)
Q Consensus 392 ~~~IG-~G~fG~VYKG~L~dg~~VAVK~l~~ 421 (433)
..+|| .||.|+||+.... +..++||+.+.
T Consensus 36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r 65 (239)
T PRK01723 36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRR 65 (239)
T ss_pred CceeecCCCCccEEEEEeC-CceEEEEEeeE
Confidence 46898 8999999999984 67889988743
No 202
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=34.13 E-value=20 Score=31.48 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=7.4
Q ss_pred EeeeeeeehhhhHhhhhh
Q 035932 315 VAGCVVVLGLLFLLLIGL 332 (433)
Q Consensus 315 ~i~~~i~~~~~lvl~i~~ 332 (433)
.+++++++++++++++++
T Consensus 79 ~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 79 GIIVGVICGVIAIVVLIV 96 (179)
T ss_pred eeeeehhhHHHHHHHhHh
Confidence 344444444433333333
No 203
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=34.03 E-value=31 Score=31.41 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=17.6
Q ss_pred CceecCCCCcceEEecCCCCcCCC
Q 035932 240 TNLTYSENGQGYRCVCQPGYKGNP 263 (433)
Q Consensus 240 ~~C~~~~~~~gy~C~C~~g~~g~~ 263 (433)
..|.+..+ .|.|.|..||..++
T Consensus 199 ~~C~~~~g--~~~c~c~~g~~~~~ 220 (224)
T cd01475 199 QVCISTPG--SYLCACTEGYALLE 220 (224)
T ss_pred ceEEcCCC--CEEeECCCCccCCC
Confidence 46776665 79999999998765
No 204
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=33.46 E-value=32 Score=35.57 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=23.7
Q ss_pred ccccCCCceEEEEEe-CCCcEEEEEecCCc
Q 035932 394 ILGQGGQGTVFKGML-TDGRIVAVKKSKSV 422 (433)
Q Consensus 394 ~IG~G~fG~VYKG~L-~dg~~VAVK~l~~~ 422 (433)
-.|+|-|++|.+|.- .-|..||||.++..
T Consensus 439 ~~GkGvFs~Vvra~D~~r~~~vAiKIIRnN 468 (752)
T KOG0670|consen 439 YTGKGVFSTVVRARDQARGQEVAIKIIRNN 468 (752)
T ss_pred ccccceeeeeeeccccCCCCeeEEEEeecc
Confidence 358999999999985 33779999999764
No 205
>PTZ00046 rifin; Provisional
Probab=32.99 E-value=7 Score=38.13 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=6.8
Q ss_pred eeeeeehhhhhhhhhh
Q 035932 333 WWLYKFIKRRRKIKRK 348 (433)
Q Consensus 333 ~~~~~~~~~rk~~~~~ 348 (433)
+.+..++||+++.+.+
T Consensus 334 IYLILRYRRKKKMkKK 349 (358)
T PTZ00046 334 IYLILRYRRKKKMKKK 349 (358)
T ss_pred HHHHHHhhhcchhHHH
Confidence 3334444444444443
No 206
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.72 E-value=12 Score=36.07 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=29.6
Q ss_pred ccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCC
Q 035932 386 TDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKS 421 (433)
Q Consensus 386 T~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~ 421 (433)
.+.|+.-++||+|.+..|....+.. .+..|+|.+|.
T Consensus 249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkk 285 (593)
T KOG0695|consen 249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKK 285 (593)
T ss_pred cccceeeeeecCcchhhhhheehcccceeeehhhHHH
Confidence 4567778999999999999998854 56889998854
No 207
>KOG1226 consensus Integrin beta subunit (N-terminal portion of extracellular region) [Signal transduction mechanisms; Extracellular structures]
Probab=32.38 E-value=66 Score=34.64 Aligned_cols=23 Identities=39% Similarity=0.933 Sum_probs=15.7
Q ss_pred EEecCCCCcCCCCCCCeecccCc
Q 035932 252 RCVCQPGYKGNPYLGCHDIDECN 274 (433)
Q Consensus 252 ~C~C~~g~~g~~~~~C~di~eC~ 274 (433)
+|.|.+||+|..+..=.+.|-|.
T Consensus 567 ~CvC~~GwtG~~C~C~~std~C~ 589 (783)
T KOG1226|consen 567 RCVCNPGWTGSACNCPLSTDTCE 589 (783)
T ss_pred cEEcCCCCccCCCCCCCCCcccc
Confidence 68899999998875223445554
No 208
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=31.39 E-value=43 Score=35.12 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred ccCCcccccCCCceEEEEEeCC-CcEEEEEecCC
Q 035932 389 YNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKS 421 (433)
Q Consensus 389 F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~ 421 (433)
|..-+.+|+|+||.|.-++-.. ...|.||.+..
T Consensus 563 yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~K 596 (772)
T KOG1152|consen 563 YTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFK 596 (772)
T ss_pred ceeeeeccccccceEEEeeecccceEEEeeehhh
Confidence 5556789999999999998844 45899998743
No 209
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=30.95 E-value=8 Score=37.64 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=6.2
Q ss_pred eeeeehhhhhhhhhh
Q 035932 334 WLYKFIKRRRKIKRK 348 (433)
Q Consensus 334 ~~~~~~~~rk~~~~~ 348 (433)
.+..++||+++.+.+
T Consensus 330 YLILRYRRKKKMkKK 344 (353)
T TIGR01477 330 YLILRYRRKKKMKKK 344 (353)
T ss_pred HHHHHhhhcchhHHH
Confidence 333444444444433
No 210
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=28.80 E-value=32 Score=28.42 Aligned_cols=12 Identities=17% Similarity=0.370 Sum_probs=6.2
Q ss_pred hHHHHHHHHhhh
Q 035932 2 WMLWLMMLLLTW 13 (433)
Q Consensus 2 ~~~~~~l~l~~~ 13 (433)
|+++++++|.++
T Consensus 3 ~~~~l~~~~~~~ 14 (126)
T TIGR03147 3 FLALLLLLISFS 14 (126)
T ss_pred HHHHHHHHHHHH
Confidence 555555444443
No 211
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=28.42 E-value=49 Score=25.73 Aligned_cols=19 Identities=42% Similarity=0.929 Sum_probs=15.0
Q ss_pred ccC-CCceEEEEEeCCCcEEEE
Q 035932 396 GQG-GQGTVFKGMLTDGRIVAV 416 (433)
Q Consensus 396 G~G-~fG~VYKG~L~dg~~VAV 416 (433)
|+| .-|+||| +++|+.+-|
T Consensus 71 G~G~~~G~aYr--l~~Gk~I~V 90 (92)
T PF09919_consen 71 GSGERLGTAYR--LKDGKLIYV 90 (92)
T ss_pred CCCeECeEEEE--cCCceEEEe
Confidence 455 5699999 999988765
No 212
>KOG3516 consensus Neurexin IV [Signal transduction mechanisms]
Probab=27.13 E-value=49 Score=37.34 Aligned_cols=37 Identities=30% Similarity=0.785 Sum_probs=30.0
Q ss_pred CeecccCcCCCCC--CCccCCCCCCeeEeCC-CCCCCCCcc
Q 035932 267 CHDIDECNEGYPC--EGTCKNTPGSYACQCP-IGMHGDGTV 304 (433)
Q Consensus 267 C~di~eC~~~~~C--~~~C~n~~gs~~C~C~-~g~~g~~~~ 304 (433)
|.-+|.| -+++| +|.|......|.|.|. .||.|..|.
T Consensus 542 C~i~drC-lPN~CehgG~C~Qs~~~f~C~C~~TGY~GatCH 581 (1306)
T KOG3516|consen 542 CGISDRC-LPNPCEHGGKCSQSWDDFECNCELTGYKGATCH 581 (1306)
T ss_pred ccccccc-CCccccCCCcccccccceeEecccccccccccc
Confidence 4445555 68899 5899998999999999 899998774
No 213
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=27.04 E-value=15 Score=33.81 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=26.3
Q ss_pred CcccccCCCceEEEEE-eCCCcEEEEEecCCcC
Q 035932 392 SRILGQGGQGTVFKGM-LTDGRIVAVKKSKSVH 423 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~-L~dg~~VAVK~l~~~~ 423 (433)
.+.+|+|.++.|+.|. +.+..-+.||.|+-..
T Consensus 43 vrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk 75 (338)
T KOG0668|consen 43 VRKVGRGKYSEVFEGINITNNEKCVIKILKPVK 75 (338)
T ss_pred HHHHcCccHhhHhcccccCCCceEEEeeechHH
Confidence 4689999999999998 3567788999997654
No 214
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=27.02 E-value=17 Score=37.18 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=30.4
Q ss_pred hhccCccCCcccccCCCceEEEEEeCC-CcEEEEEecCCc
Q 035932 384 KATDNYNVSRILGQGGQGTVFKGMLTD-GRIVAVKKSKSV 422 (433)
Q Consensus 384 ~aT~~F~~~~~IG~G~fG~VYKG~L~d-g~~VAVK~l~~~ 422 (433)
+-.++|.....+|.||||+|+.+.... +-..|||++...
T Consensus 46 r~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlk 85 (516)
T KOG1033|consen 46 REANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLK 85 (516)
T ss_pred hhhccccccccccccCccccCCccccccchhhHHHHhccc
Confidence 334678888999999999999988744 447899988443
No 215
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.53 E-value=86 Score=35.50 Aligned_cols=34 Identities=32% Similarity=0.648 Sum_probs=20.6
Q ss_pred CCC-CCCceecCCCCcceEE-ecCCCCcCCCCCCCe
Q 035932 235 SCG-DNTNLTYSENGQGYRC-VCQPGYKGNPYLGCH 268 (433)
Q Consensus 235 ~C~-~~~~C~~~~~~~gy~C-~C~~g~~g~~~~~C~ 268 (433)
.|. +++.|...++..|.+| .|.+|+.|=.-.||+
T Consensus 776 vCn~~GGqCqCkPnVVGR~CdqCApGtyGFGPsGCk 811 (1758)
T KOG0994|consen 776 VCNPNGGQCQCKPNVVGRRCDQCAPGTYGFGPSGCK 811 (1758)
T ss_pred cccCCCceecccCccccccccccCCcccCcCCccCc
Confidence 355 5566666666666666 367776665544565
No 216
>PF11403 Yeast_MT: Yeast metallothionein; InterPro: IPR022710 Metallothioneins are characterised by an abundance of cysteine residues and a lack of generic secondary structure motifs. This protein functions in primary metal storage, transport and detoxification []. For the first 40 residues in the protein the polypeptide wraps around the metal by forming two large parallel loops separated by a deep cleft containing the metal cluster []. ; PDB: 1AQS_A 1AQR_A 1RJU_V 1FMY_A 1AOO_A 1AQQ_A.
Probab=26.13 E-value=57 Score=19.88 Aligned_cols=11 Identities=45% Similarity=1.310 Sum_probs=4.6
Q ss_pred eEeCCCCCCCC
Q 035932 291 ACQCPIGMHGD 301 (433)
Q Consensus 291 ~C~C~~g~~g~ 301 (433)
.|.||.|...+
T Consensus 23 scscptgcnsd 33 (40)
T PF11403_consen 23 SCSCPTGCNSD 33 (40)
T ss_dssp S-SS-TTTTSS
T ss_pred cCCCCCCCCCC
Confidence 45566655433
No 217
>KOG3482 consensus Small nuclear ribonucleoprotein (snRNP) SMF [RNA processing and modification]
Probab=24.98 E-value=64 Score=23.56 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=11.5
Q ss_pred ccccCCCceEEEEEe
Q 035932 394 ILGQGGQGTVFKGML 408 (433)
Q Consensus 394 ~IG~G~fG~VYKG~L 408 (433)
++-+=.+|.+|||.|
T Consensus 21 V~vkLKwg~eYkG~L 35 (79)
T KOG3482|consen 21 VLVKLKWGQEYKGTL 35 (79)
T ss_pred EEEEEecCcEEEEEE
Confidence 444556789999998
No 218
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=24.76 E-value=52 Score=17.16 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=5.7
Q ss_pred HHHHHHHHhhhc
Q 035932 3 MLWLMMLLLTWP 14 (433)
Q Consensus 3 ~~~~~l~l~~~~ 14 (433)
+.+|+.+|+.++
T Consensus 5 vIIlvvLLliSf 16 (19)
T PF13956_consen 5 VIILVVLLLISF 16 (19)
T ss_pred hHHHHHHHhccc
Confidence 344455555443
No 219
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=24.47 E-value=82 Score=29.54 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=31.3
Q ss_pred cChhhHhhhccCccCCccc---ccCCCceEEEEEeCCCcEEEEEecCCc
Q 035932 377 FTSKDLEKATDNYNVSRIL---GQGGQGTVFKGMLTDGRIVAVKKSKSV 422 (433)
Q Consensus 377 f~~~eL~~aT~~F~~~~~I---G~G~fG~VYKG~L~dg~~VAVK~l~~~ 422 (433)
.+++.|.+..+.-....+. ..|.=..||+|.-.++..||||..+..
T Consensus 35 ~t~~~l~~L~~rg~i~~~~g~istGKEA~Vy~a~~~~~~~~avKiyr~~ 83 (268)
T COG1718 35 RTLETLRRLLSRGVITELVGCISTGKEANVYLAETGDGRYVAVKIYRTS 83 (268)
T ss_pred HHHHHHHHHhcCCceeeeEeeecCCcceEEEeeccCCCceEEEEEEehh
Confidence 4555555544433334444 456666999999888999999998764
No 220
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.74 E-value=16 Score=30.26 Aligned_cols=6 Identities=50% Similarity=0.623 Sum_probs=2.4
Q ss_pred ehhhhh
Q 035932 338 FIKRRR 343 (433)
Q Consensus 338 ~~~~rk 343 (433)
++++|+
T Consensus 24 rRR~r~ 29 (130)
T PF12273_consen 24 RRRRRR 29 (130)
T ss_pred HHHhhc
Confidence 344443
No 221
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=22.70 E-value=30 Score=36.28 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=18.7
Q ss_pred CcccccCCCceEEEEEeCC-CcEEE
Q 035932 392 SRILGQGGQGTVFKGMLTD-GRIVA 415 (433)
Q Consensus 392 ~~~IG~G~fG~VYKG~L~d-g~~VA 415 (433)
..+||+|.|=+||||.-.. |..||
T Consensus 45 ~evLGrGafKtVYka~De~~giEVA 69 (632)
T KOG0584|consen 45 DEVLGRGAFKTVYKAFDEEEGIEVA 69 (632)
T ss_pred hhhcccccceeeeeccccccchhhH
Confidence 4689999999999998532 55554
No 222
>PHA02871 hypothetical protein; Provisional
Probab=20.22 E-value=72 Score=26.63 Aligned_cols=17 Identities=29% Similarity=0.823 Sum_probs=13.9
Q ss_pred CCcCCCCCe-ecccccCC
Q 035932 31 GCEEKCGDV-TVPYPFGI 47 (433)
Q Consensus 31 ~C~~~CG~v-~I~yPFgi 47 (433)
-||.+|--+ -|-|||-+
T Consensus 25 lcpatckcihcilypfev 42 (222)
T PHA02871 25 LCPATCKCIHCILYPFEV 42 (222)
T ss_pred cCccccceeeEEechHHH
Confidence 389999877 48999976
Done!