BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035933
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/346 (23%), Positives = 136/346 (39%), Gaps = 47/346 (13%)
Query: 25 ALIL--AGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82
AL+L AG DV V E++ P +G TG ++ ++V L Q L +I++P +
Sbjct: 21 ALMLRDAGVDVDVYERSPQPLSGFGTGI-----VVQPELVHYLLEQGVELDSISVPSSSM 75
Query: 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCI---SH 139
+ + + V A ++ + ++G +Y E + + C+ S
Sbjct: 76 EYVDALTGERVGSVPA-----DWRFTSYDSIYGGLYELFGPE-----RYHTSKCLVGLSQ 125
Query: 140 DKSTVNVKAKNLRTXXXXXXXXXXXXAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFS 199
D TV +R ADG S VR+ L + Y GY WRGV
Sbjct: 126 DSETVQ-----MRFSDGTKAEANWVIGADGGASVVRKRLL-GIEPTYAGYVTWRGVLQPG 179
Query: 200 ENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK------RLNWIWY---ITQP 250
E + + + L+ H + Y + + RLN+ WY P
Sbjct: 180 EVAD--------DVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGP 231
Query: 251 ELACFILPFICIRGGSATMKVSSD--MIKKMHQEVEKICAPEHATVIKETKEPFLNLIAD 308
+L + IR ++ S + +++ H + E + P V+ + PF+ ++AD
Sbjct: 232 DLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKPFRDLVLNASS-PFVTVVAD 290
Query: 309 CDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLER 354
+ ++ V+LIGDAA PH A A DA L + +
Sbjct: 291 AT-VDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK 335
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 38/224 (16%)
Query: 166 AADGSRSSVRQ---TFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVH 222
AADGS S++R F P + RY GY W G+ E E + + +G G
Sbjct: 175 AADGSHSALRPWVLGFTP--QRRYAGYVNWNGLV-----EIDEALAPGDQWTTFVGEGKQ 227
Query: 223 TDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQE 282
L+P + Y ++ P LP A + D ++
Sbjct: 228 VSLMPVSAGRFY----------FFFDVP------LP--------AGLAEDRDTLRADLSR 263
Query: 283 VEKICAPEHATVIKETKEPFLNLIA--DCDPLTQIYWDNVVLIGDAAHPITPHCARSTNM 340
AP +I N I D +P +++ V L+GDA H TP +
Sbjct: 264 YFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCA 323
Query: 341 AIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRR 384
A+ DA VLG + ++ +AL E+++ R VL +R+
Sbjct: 324 AMEDAVVLGAVFRQ--TRDIAAALREYEAQRCDRVRDLVLKARK 365
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 38/224 (16%)
Query: 166 AADGSRSSVRQ---TFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVH 222
AADGS S++R F P + RY GY W G+ + E
Sbjct: 175 AADGSHSALRPWVLGFTP--QRRYAGYVNWNGLVEIDEA--------------------- 211
Query: 223 TDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQE 282
L PG + KR++ F +P A + D ++
Sbjct: 212 --LAPGDQWTTFVGEGKRVSLXPVSAGRFYFFFDVPL------PAGLAEDRDTLRADLSR 263
Query: 283 VEKICAPEHATVIKETKEPFLNLIA--DCDPLTQIYWDNVVLIGDAAHPITPHCARSTNM 340
AP +I N I D +P +++ V L+GDA H TP +
Sbjct: 264 YFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCA 323
Query: 341 AIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRR 384
A DA VLG + ++ +AL E+++ R VL +R+
Sbjct: 324 AXEDAVVLGAVFRQ--TRDIAAALREYEAQRCDRVRDLVLKARK 365
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 306 IADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALE 365
+ D DPL + L+GDAAH + P A + AI D L L R ++ +AL
Sbjct: 291 MVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR--NADVAAALR 348
Query: 366 EHKSVRLPVTNKQVLHSR 383
E++ R P NK +L +R
Sbjct: 349 EYEEARRPTANKIILANR 366
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 308 DCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEH 367
D DPL + L+GDAAH P A + AI D L L R ++ +AL E+
Sbjct: 293 DRDPLPHWGRGRITLLGDAAHLXYPXGANGASQAILDGIELAAALAR--NADVAAALREY 350
Query: 368 KSVRLPVTNKQVLHSR 383
+ R P NK +L +R
Sbjct: 351 EEARRPTANKIILANR 366
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 302 FLNLIADCDPLTQIYWDN-VVLIGDAAHPITPHCARSTNMAIADAAVLG-KCLER---WG 356
+L+ D + Y V+L GDAAH P + N + DA LG K R WG
Sbjct: 305 WLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWG 364
Query: 357 PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLPD 396
E L L+ + R PV + +L++R +L L PD
Sbjct: 365 SEEL---LDTYHDERHPVAERVLLNTR----AQLALMRPD 397
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLG----KCLERW-GPENLHSALEEHKSVRLP 373
V L GDAAH ++P N I AA LG L W GP L + EE + V +
Sbjct: 310 RVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAIT 369
Query: 374 VTNKQVLHSRRV 385
+ ++ RR
Sbjct: 370 SLEEANVNLRRT 381
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLG----KCLERW-GPENLHSALEEHKSVRLP 373
V L GDAAH ++P N I AA LG L W GP L + EE + V +
Sbjct: 310 RVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAIT 369
Query: 374 VTNKQVLHSRRV 385
+ ++ RR
Sbjct: 370 SLEEANVNLRRT 381
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ N+A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLER--WGPENLHSALEEHKSVRLPVTNK 377
V L+GDA H TP N A+ DA +L + L G E L A+ +++ N+
Sbjct: 313 VTLLGDAIHNXTPXTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQXRAYANE 372
Query: 378 QV---LHSRRVGLIKLGL-PLPDRGLLIQ 402
V L S + +I + PL R L I+
Sbjct: 373 IVGISLRSAQNAVIHFSIPPLKQRHLSIR 401
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHK 368
+ +IGDAAH + P + N + DA +L L ++ A++ ++
Sbjct: 296 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 344
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHK 368
+ +IGDAAH + P + N + DA +L L ++ A++ ++
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 364
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHK 368
+ +IGDAAH + P + N + DA +L L ++ A++ ++
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 364
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 281 QEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW-DNVVLIGDAAHPITPHCARSTN 339
+ E I A + K +LNL YW DNV ++GDA H + P + N
Sbjct: 256 ESAEAIAAVTGTSRFKGIPIGYLNL--------DRYWADNVAMLGDAIHNVHPITGQGMN 307
Query: 340 MAI 342
+AI
Sbjct: 308 LAI 310
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHK 368
+ +IGDAAH + P + N + DA +L L ++ A++ ++
Sbjct: 316 ITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYE 364
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNK 377
V L+GDAAH + P A+ A+ +A L + LE ++ AL ++ P+T++
Sbjct: 319 VALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--GSSVEDALVAWETRIRPITDR 374
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSV 370
+ L GDAAH + P A+ ++A +D + L + L + E LE + ++
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLDLAASDVSTLYRLLLKAYREGRGELLERYSAI 331
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNK 377
V L+GDAAH + P A+ A+ +A L + LE ++ AL ++ P+T++
Sbjct: 283 VALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--GSSVEDALVAWETRIRPITDR 338
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNK 377
V L+GDAAH + P A+ A+ +A L + LE ++ AL ++ P+T++
Sbjct: 283 VALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--GSSVEDALVAWETRIRPITDR 338
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNK 377
V L+GDAAH + P A+ A+ +A L + LE ++ AL ++ P+T++
Sbjct: 283 VALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEE--GSSVEDALVAWETRIRPITDR 338
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 23 AKALILAGWDVVVIEKTRGPPTGNPTGAG-------------------IALHLLSQKIVK 63
A+AL+ +G +V V++ R PP P G G + HL S K V
Sbjct: 24 ARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASHKSVP 83
Query: 64 SWLHQP-DLLHNI 75
QP D L N+
Sbjct: 84 RSFKQPLDYLDNV 96
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 295 IKETKEPFLNLIADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLER 354
I+ KEPF+N+ P +I VL+ + HP+ HC R + L K L++
Sbjct: 65 IEGNKEPFVNI-----PDHKIRXALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRK-LQK 118
Query: 355 WGPENLHSALEEHKSVRLPVTNKQV 379
W ++ + + + V++++
Sbjct: 119 WCLTSIFDEYQRFAAAKARVSDQRF 143
>pdb|1G62|A Chain A, Crystal Structure Of S.Cerevisiae Eif6
pdb|2X7N|B Chain B, Mechanism Of Eif6s Anti-Association Activity
Length = 224
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 356 GPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLPDRGLLIQTQ 404
G EN +SA E +P+ + + +R +G + G RGLL+ TQ
Sbjct: 30 GSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAG---NRRGLLVPTQ 75
>pdb|3J2I|B Chain B, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 245
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 356 GPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLPDRGLLIQTQ 404
G EN +SA E +P+ + + +R +G + G RGLL+ TQ
Sbjct: 30 GSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAG---NRRGLLVPTQ 75
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 312 LTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAA----VLGKCLERWGPENLHSALEEH 367
+T+ V+L GD+AH P + N +I DA LG + E L L+ +
Sbjct: 271 VTEYRRGRVILAGDSAHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEEL---LDSY 327
Query: 368 KSVRLPVTNKQVLHSRRVGLIKLGLP 393
S R V + +++++ GL+ L P
Sbjct: 328 HSERHAVGKRLLMNTQAQGLLFLSGP 353
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNK 377
V L+GDAAH P A+ A +A L + LE ++ AL ++ P+T++
Sbjct: 319 VALVGDAAHAXCPALAQGAGCAXVNAFSLSQDLEE--GSSVEDALVAWETRIRPITDR 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,644,614
Number of Sequences: 62578
Number of extensions: 467684
Number of successful extensions: 901
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 47
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)