Query 035933
Match_columns 405
No_of_seqs 163 out of 1750
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 07:49:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07236 hypothetical protein; 100.0 3.1E-44 6.7E-49 336.6 35.5 363 5-394 4-380 (386)
2 TIGR03219 salicylate_mono sali 100.0 2.1E-44 4.6E-49 340.8 32.7 365 8-394 1-378 (414)
3 PRK06475 salicylate hydroxylas 100.0 2.8E-44 6.2E-49 338.3 32.3 351 8-392 3-363 (400)
4 PRK06753 hypothetical protein; 100.0 6.8E-44 1.5E-48 333.6 34.4 341 8-394 1-343 (373)
5 PRK07538 hypothetical protein; 100.0 3.9E-44 8.4E-49 338.8 32.5 364 8-403 1-385 (413)
6 PRK08163 salicylate hydroxylas 100.0 6.8E-43 1.5E-47 329.5 32.4 346 6-392 3-359 (396)
7 PRK05868 hypothetical protein; 100.0 2.7E-42 6E-47 320.5 32.3 343 8-390 2-353 (372)
8 PLN02927 antheraxanthin epoxid 100.0 6.5E-42 1.4E-46 329.8 35.4 350 6-391 80-448 (668)
9 PRK07588 hypothetical protein; 100.0 5.8E-42 1.3E-46 322.2 33.1 343 8-393 1-353 (391)
10 PRK08013 oxidoreductase; Provi 100.0 1.7E-42 3.8E-47 325.9 28.2 346 6-394 2-362 (400)
11 PRK07045 putative monooxygenas 100.0 1.9E-41 4.1E-46 318.3 32.1 350 5-394 3-363 (388)
12 PRK06847 hypothetical protein; 100.0 4E-41 8.7E-46 315.3 32.9 340 7-392 4-354 (375)
13 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.5E-42 1.4E-46 320.2 27.2 346 7-396 2-357 (387)
14 PRK06617 2-octaprenyl-6-methox 100.0 7.6E-42 1.7E-46 318.7 26.9 335 8-394 2-343 (374)
15 PRK08850 2-octaprenyl-6-methox 100.0 8.9E-42 1.9E-46 322.0 27.1 348 5-394 2-362 (405)
16 KOG2614 Kynurenine 3-monooxyge 100.0 1.1E-41 2.4E-46 300.1 24.8 351 7-395 2-381 (420)
17 PF01494 FAD_binding_3: FAD bi 100.0 7.1E-42 1.5E-46 318.6 22.5 340 8-382 2-356 (356)
18 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 7.8E-41 1.7E-45 313.0 29.2 347 7-394 2-355 (390)
19 PRK08849 2-octaprenyl-3-methyl 100.0 1.4E-40 3.1E-45 311.4 29.0 342 6-392 2-352 (384)
20 PRK09126 hypothetical protein; 100.0 5.5E-41 1.2E-45 316.1 24.5 344 7-393 3-359 (392)
21 PRK05714 2-octaprenyl-3-methyl 100.0 1.4E-40 3.1E-45 314.2 25.8 344 7-393 2-364 (405)
22 TIGR01989 COQ6 Ubiquinone bios 100.0 4.2E-40 9.1E-45 312.7 28.1 349 8-394 1-413 (437)
23 PRK07364 2-octaprenyl-6-methox 100.0 3.2E-40 6.9E-45 313.2 27.3 345 6-393 17-373 (415)
24 PRK08243 4-hydroxybenzoate 3-m 100.0 7.8E-40 1.7E-44 307.3 29.3 349 7-395 2-356 (392)
25 PRK06183 mhpA 3-(3-hydroxyphen 100.0 5.3E-40 1.2E-44 319.8 27.6 345 5-393 8-362 (538)
26 TIGR01984 UbiH 2-polyprenyl-6- 100.0 4.2E-40 9.2E-45 309.1 25.4 342 9-393 1-352 (382)
27 PRK08773 2-octaprenyl-3-methyl 100.0 1E-39 2.2E-44 307.1 26.7 350 1-394 1-362 (392)
28 PLN02985 squalene monooxygenas 100.0 3.5E-39 7.6E-44 308.8 30.5 347 6-395 42-407 (514)
29 PRK08294 phenol 2-monooxygenas 100.0 4.5E-39 9.7E-44 315.6 30.5 356 5-394 30-417 (634)
30 PRK07494 2-octaprenyl-6-methox 100.0 1.4E-39 3.1E-44 305.9 25.9 343 5-394 5-357 (388)
31 PRK06126 hypothetical protein; 100.0 4.3E-39 9.3E-44 314.6 29.6 350 2-390 2-376 (545)
32 PRK06184 hypothetical protein; 100.0 4.5E-39 9.8E-44 311.1 28.4 341 5-390 1-353 (502)
33 TIGR01988 Ubi-OHases Ubiquinon 100.0 3.2E-39 7E-44 303.8 26.3 341 9-393 1-355 (385)
34 PRK07333 2-octaprenyl-6-methox 100.0 2.7E-39 5.8E-44 305.8 25.6 344 8-393 2-359 (403)
35 PRK08020 ubiF 2-octaprenyl-3-m 100.0 5.1E-39 1.1E-43 302.5 26.4 345 6-393 4-360 (391)
36 PRK06996 hypothetical protein; 100.0 7.2E-39 1.6E-43 301.2 26.7 341 6-393 10-364 (398)
37 PRK08244 hypothetical protein; 100.0 1.7E-38 3.6E-43 306.7 29.9 341 7-391 2-346 (493)
38 PRK06185 hypothetical protein; 100.0 7E-38 1.5E-42 296.3 31.8 348 1-393 1-361 (407)
39 PRK05732 2-octaprenyl-6-methox 100.0 2.5E-38 5.4E-43 298.5 27.1 345 5-392 1-360 (395)
40 PRK07608 ubiquinone biosynthes 100.0 6.1E-38 1.3E-42 295.1 27.9 342 7-393 5-358 (388)
41 PTZ00367 squalene epoxidase; P 100.0 4.4E-37 9.4E-42 295.4 32.1 344 6-391 32-423 (567)
42 PRK06834 hypothetical protein; 100.0 6.9E-37 1.5E-41 292.5 29.2 333 5-390 1-338 (488)
43 PRK08132 FAD-dependent oxidore 100.0 7.8E-37 1.7E-41 298.4 30.2 341 2-391 18-373 (547)
44 PRK07190 hypothetical protein; 100.0 5E-36 1.1E-40 286.2 29.5 334 5-390 3-348 (487)
45 PLN00093 geranylgeranyl diphos 100.0 1.8E-34 4E-39 272.2 25.3 340 6-402 38-396 (450)
46 TIGR02023 BchP-ChlP geranylger 100.0 1.3E-33 2.7E-38 264.7 25.6 338 8-402 1-347 (388)
47 TIGR02028 ChlP geranylgeranyl 100.0 5.1E-33 1.1E-37 260.4 26.7 338 8-402 1-357 (398)
48 COG0644 FixC Dehydrogenases (f 100.0 3.8E-32 8.3E-37 254.7 26.0 335 6-391 2-341 (396)
49 PRK11445 putative oxidoreducta 100.0 2.1E-31 4.5E-36 246.1 26.8 313 8-377 2-319 (351)
50 PRK08255 salicylyl-CoA 5-hydro 100.0 3.3E-32 7.2E-37 273.2 21.7 326 8-392 1-342 (765)
51 TIGR02032 GG-red-SF geranylger 100.0 2.4E-30 5.1E-35 234.6 23.5 289 8-352 1-295 (295)
52 PRK10015 oxidoreductase; Provi 100.0 2.1E-28 4.5E-33 231.0 28.4 347 6-391 4-373 (429)
53 PRK10157 putative oxidoreducta 100.0 1.2E-27 2.6E-32 226.1 28.4 346 6-390 4-371 (428)
54 TIGR01790 carotene-cycl lycope 100.0 4.4E-27 9.5E-32 221.2 25.8 332 9-402 1-346 (388)
55 KOG1298 Squalene monooxygenase 99.9 5.6E-25 1.2E-29 191.2 22.8 357 6-399 44-411 (509)
56 PLN02697 lycopene epsilon cycl 99.9 1.4E-24 3E-29 207.0 22.7 343 7-402 108-467 (529)
57 KOG3855 Monooxygenase involved 99.9 8.9E-25 1.9E-29 191.9 17.7 355 7-395 36-451 (481)
58 PF04820 Trp_halogenase: Trypt 99.9 6.8E-24 1.5E-28 200.7 22.5 322 9-387 1-383 (454)
59 PLN02463 lycopene beta cyclase 99.9 2.1E-23 4.6E-28 196.1 24.6 297 7-356 28-332 (447)
60 TIGR01789 lycopene_cycl lycope 99.9 1.6E-22 3.5E-27 187.1 24.5 294 9-378 1-310 (370)
61 PF05834 Lycopene_cycl: Lycope 99.9 2.4E-20 5.3E-25 173.4 23.6 280 9-354 1-290 (374)
62 PF08491 SE: Squalene epoxidas 99.8 8.5E-17 1.8E-21 137.8 19.3 203 161-394 2-210 (276)
63 PRK04176 ribulose-1,5-biphosph 99.6 9.8E-15 2.1E-19 127.8 13.4 143 6-178 24-179 (257)
64 TIGR00292 thiazole biosynthesi 99.6 2.8E-14 6E-19 124.5 14.1 142 6-178 20-176 (254)
65 PF01946 Thi4: Thi4 family; PD 99.6 1E-14 2.2E-19 119.4 10.3 142 7-178 17-171 (230)
66 COG2081 Predicted flavoprotein 99.6 2E-14 4.3E-19 127.9 12.6 160 5-173 1-168 (408)
67 COG1635 THI4 Ribulose 1,5-bisp 99.5 7.6E-14 1.7E-18 113.4 12.0 142 7-178 30-184 (262)
68 KOG2415 Electron transfer flav 99.5 8.4E-13 1.8E-17 117.0 19.3 342 4-387 73-459 (621)
69 PF03486 HI0933_like: HI0933-l 99.4 1.2E-13 2.6E-18 128.4 5.5 137 8-173 1-167 (409)
70 KOG1399 Flavin-containing mono 99.4 1.8E-12 3.8E-17 121.0 12.8 142 5-172 4-153 (448)
71 PRK12266 glpD glycerol-3-phosp 99.4 3.6E-11 7.8E-16 116.4 21.6 39 4-42 3-41 (508)
72 PLN02172 flavin-containing mon 99.4 2.6E-12 5.6E-17 122.1 11.9 155 4-173 7-174 (461)
73 PRK13369 glycerol-3-phosphate 99.3 1.8E-10 3.8E-15 111.8 22.0 39 4-42 3-41 (502)
74 PF00743 FMO-like: Flavin-bind 99.3 7.1E-12 1.5E-16 120.7 12.0 145 7-174 1-152 (531)
75 PF13738 Pyr_redox_3: Pyridine 99.3 3.4E-12 7.4E-17 108.9 8.6 136 11-174 1-140 (203)
76 COG2072 TrkA Predicted flavopr 99.3 3.2E-11 7E-16 114.2 14.3 138 5-173 6-145 (443)
77 TIGR01377 soxA_mon sarcosine o 99.3 8E-10 1.7E-14 103.9 23.6 35 8-42 1-35 (380)
78 PF01266 DAO: FAD dependent ox 99.3 3.9E-11 8.5E-16 111.7 12.4 60 107-174 143-205 (358)
79 PRK11259 solA N-methyltryptoph 99.3 1.9E-09 4.1E-14 101.2 23.5 37 6-42 2-38 (376)
80 PRK01747 mnmC bifunctional tRN 99.2 9.7E-10 2.1E-14 110.3 21.2 59 108-173 405-464 (662)
81 PRK05192 tRNA uridine 5-carbox 99.2 1.9E-10 4.1E-15 110.6 14.0 151 5-173 2-158 (618)
82 PF12831 FAD_oxidored: FAD dep 99.2 1.7E-11 3.7E-16 116.2 5.3 150 9-176 1-154 (428)
83 COG0578 GlpA Glycerol-3-phosph 99.1 5.2E-09 1.1E-13 98.8 19.7 170 5-178 10-232 (532)
84 COG0579 Predicted dehydrogenas 99.1 5.7E-10 1.2E-14 103.0 12.5 168 6-178 2-218 (429)
85 PRK12409 D-amino acid dehydrog 99.1 7.6E-09 1.7E-13 98.2 20.7 35 8-42 2-36 (410)
86 PRK11728 hydroxyglutarate oxid 99.1 8.1E-10 1.8E-14 104.1 13.9 64 107-178 145-211 (393)
87 PRK08274 tricarballylate dehyd 99.1 1E-09 2.2E-14 105.9 14.3 37 5-41 2-38 (466)
88 PRK00711 D-amino acid dehydrog 99.1 1.4E-08 3E-13 96.7 21.4 33 9-41 2-34 (416)
89 TIGR01373 soxB sarcosine oxida 99.1 1.3E-08 2.9E-13 96.4 21.0 36 6-41 29-66 (407)
90 PLN02661 Putative thiazole syn 99.1 7.3E-10 1.6E-14 99.5 11.5 139 6-174 91-246 (357)
91 TIGR00275 flavoprotein, HI0933 99.1 4.3E-10 9.4E-15 105.7 10.1 153 11-172 1-160 (400)
92 PLN02464 glycerol-3-phosphate 99.1 2.9E-08 6.3E-13 98.3 23.0 71 108-178 229-303 (627)
93 KOG2820 FAD-dependent oxidored 99.1 1.2E-08 2.7E-13 88.7 17.3 163 1-171 1-211 (399)
94 PRK06263 sdhA succinate dehydr 99.1 2.3E-09 5E-14 105.0 14.2 40 1-41 1-40 (543)
95 PRK06854 adenylylsulfate reduc 99.1 2.3E-09 5E-14 105.9 14.1 37 6-42 10-48 (608)
96 PRK06481 fumarate reductase fl 99.1 3.9E-09 8.5E-14 102.4 15.3 38 6-43 60-97 (506)
97 TIGR01292 TRX_reduct thioredox 99.0 2.3E-09 5E-14 97.3 12.5 111 8-173 1-113 (300)
98 PRK08275 putative oxidoreducta 99.0 2.3E-09 5E-14 105.1 13.2 63 112-174 138-202 (554)
99 COG3380 Predicted NAD/FAD-depe 99.0 1.7E-09 3.6E-14 91.2 9.7 146 8-171 2-159 (331)
100 PRK11101 glpA sn-glycerol-3-ph 99.0 5.1E-09 1.1E-13 102.4 14.2 36 7-42 6-41 (546)
101 TIGR01813 flavo_cyto_c flavocy 99.0 8.3E-09 1.8E-13 98.8 15.1 62 111-173 130-193 (439)
102 PF00890 FAD_binding_2: FAD bi 99.0 7.2E-09 1.6E-13 98.7 14.6 64 109-173 139-204 (417)
103 PTZ00139 Succinate dehydrogena 99.0 8E-09 1.7E-13 102.2 15.2 163 6-174 28-231 (617)
104 PF01134 GIDA: Glucose inhibit 99.0 3.3E-09 7.2E-14 96.9 11.3 141 9-171 1-151 (392)
105 TIGR01812 sdhA_frdA_Gneg succi 99.0 7.7E-09 1.7E-13 102.0 14.3 63 112-176 130-195 (566)
106 PRK09078 sdhA succinate dehydr 99.0 9.6E-09 2.1E-13 101.4 14.9 62 112-173 150-213 (598)
107 TIGR01320 mal_quin_oxido malat 99.0 7.8E-09 1.7E-13 99.2 13.7 72 107-179 174-248 (483)
108 PLN00128 Succinate dehydrogena 99.0 9.3E-09 2E-13 101.8 14.5 38 6-43 49-86 (635)
109 PRK13339 malate:quinone oxidor 99.0 8.4E-09 1.8E-13 98.4 13.6 71 107-178 180-254 (497)
110 COG0492 TrxB Thioredoxin reduc 99.0 8.9E-09 1.9E-13 92.1 12.9 114 6-175 2-118 (305)
111 PRK07121 hypothetical protein; 99.0 5.8E-09 1.3E-13 101.2 12.5 37 7-43 20-56 (492)
112 TIGR00136 gidA glucose-inhibit 99.0 9.1E-09 2E-13 99.0 13.5 149 8-173 1-155 (617)
113 PRK08958 sdhA succinate dehydr 99.0 1.1E-08 2.4E-13 100.7 14.6 42 1-42 1-42 (588)
114 PRK06452 sdhA succinate dehydr 99.0 1.2E-08 2.6E-13 100.2 14.7 38 6-43 4-41 (566)
115 PRK15317 alkyl hydroperoxide r 99.0 7.6E-09 1.6E-13 100.8 12.6 111 6-172 210-322 (517)
116 PRK06069 sdhA succinate dehydr 98.9 1.2E-08 2.7E-13 100.6 14.0 39 6-44 4-45 (577)
117 PRK07057 sdhA succinate dehydr 98.9 2.3E-08 4.9E-13 98.7 15.8 37 6-42 11-47 (591)
118 PRK05945 sdhA succinate dehydr 98.9 1.1E-08 2.4E-13 100.7 13.7 38 6-43 2-41 (575)
119 TIGR00551 nadB L-aspartate oxi 98.9 1.4E-08 3E-13 98.2 14.1 35 7-42 2-36 (488)
120 PRK09231 fumarate reductase fl 98.9 1.5E-08 3.2E-13 99.8 14.3 62 112-175 134-199 (582)
121 PRK05257 malate:quinone oxidor 98.9 1.3E-08 2.8E-13 97.8 13.3 72 107-179 179-254 (494)
122 PRK07573 sdhA succinate dehydr 98.9 1.7E-08 3.6E-13 100.3 14.5 37 6-42 34-70 (640)
123 PRK05249 soluble pyridine nucl 98.9 6.4E-09 1.4E-13 100.2 11.0 38 5-42 3-40 (461)
124 PRK06175 L-aspartate oxidase; 98.9 9.7E-09 2.1E-13 97.6 11.6 37 6-43 3-39 (433)
125 PRK09077 L-aspartate oxidase; 98.9 2.9E-08 6.3E-13 97.0 15.1 66 111-176 138-211 (536)
126 PRK08401 L-aspartate oxidase; 98.9 1.4E-08 3E-13 97.6 12.7 34 8-41 2-35 (466)
127 PRK09897 hypothetical protein; 98.9 1.9E-08 4.1E-13 96.9 13.5 35 8-42 2-38 (534)
128 TIGR01176 fum_red_Fp fumarate 98.9 2.4E-08 5.2E-13 98.1 14.5 62 111-174 132-197 (580)
129 PRK08641 sdhA succinate dehydr 98.9 4.5E-08 9.7E-13 96.6 16.4 39 5-43 1-39 (589)
130 PRK06467 dihydrolipoamide dehy 98.9 1.2E-08 2.6E-13 98.3 11.9 37 5-41 2-38 (471)
131 PRK07804 L-aspartate oxidase; 98.9 2.8E-08 6.1E-13 97.1 14.6 38 6-43 15-52 (541)
132 PRK08205 sdhA succinate dehydr 98.9 2.8E-08 6E-13 98.1 14.3 64 111-174 140-208 (583)
133 PRK05335 tRNA (uracil-5-)-meth 98.9 8.8E-09 1.9E-13 95.0 10.0 116 8-136 3-126 (436)
134 PRK07803 sdhA succinate dehydr 98.9 3E-08 6.4E-13 98.4 14.3 37 6-42 7-43 (626)
135 TIGR03140 AhpF alkyl hydropero 98.9 1.1E-08 2.3E-13 99.6 10.9 111 6-172 211-323 (515)
136 PRK08071 L-aspartate oxidase; 98.9 4.1E-08 8.9E-13 95.3 14.7 160 6-174 2-192 (510)
137 PLN02612 phytoene desaturase 98.9 2.3E-07 5E-12 91.1 20.0 62 7-68 93-167 (567)
138 PTZ00383 malate:quinone oxidor 98.9 3.6E-08 7.8E-13 94.4 13.7 65 107-178 207-280 (497)
139 TIGR03143 AhpF_homolog putativ 98.9 2.7E-08 5.9E-13 97.6 13.0 34 7-40 4-37 (555)
140 TIGR03364 HpnW_proposed FAD de 98.9 2.5E-08 5.4E-13 93.2 11.8 35 8-42 1-35 (365)
141 COG0665 DadA Glycine/D-amino a 98.9 4.5E-07 9.8E-12 85.5 20.5 38 6-43 3-40 (387)
142 PRK07251 pyridine nucleotide-d 98.8 2.3E-08 5E-13 95.6 11.5 36 6-41 2-37 (438)
143 PRK06370 mercuric reductase; V 98.8 1.7E-08 3.7E-13 97.2 10.6 37 4-40 2-38 (463)
144 PRK08626 fumarate reductase fl 98.8 4.2E-08 9.1E-13 97.6 13.5 38 6-43 4-41 (657)
145 TIGR03329 Phn_aa_oxid putative 98.8 4.5E-08 9.8E-13 94.1 13.4 58 107-173 179-238 (460)
146 PRK06115 dihydrolipoamide dehy 98.8 2.6E-08 5.5E-13 95.9 11.5 36 6-41 2-37 (466)
147 PRK12416 protoporphyrinogen ox 98.8 7.2E-07 1.6E-11 86.2 21.2 61 8-68 2-80 (463)
148 PLN02815 L-aspartate oxidase 98.8 6E-08 1.3E-12 95.2 13.7 37 6-43 28-64 (594)
149 TIGR01811 sdhA_Bsu succinate d 98.8 7.4E-08 1.6E-12 95.1 14.2 33 10-42 1-33 (603)
150 PF13454 NAD_binding_9: FAD-NA 98.8 4.1E-08 8.8E-13 79.6 10.4 139 11-170 1-155 (156)
151 PRK07818 dihydrolipoamide dehy 98.8 2.3E-08 5.1E-13 96.3 10.1 35 5-39 2-36 (466)
152 PRK05976 dihydrolipoamide dehy 98.8 4.1E-08 8.8E-13 94.8 11.3 34 6-39 3-36 (472)
153 PF13450 NAD_binding_8: NAD(P) 98.8 8.2E-09 1.8E-13 70.3 4.5 31 12-42 1-31 (68)
154 PF07992 Pyr_redox_2: Pyridine 98.8 1.3E-08 2.8E-13 86.6 6.3 33 9-41 1-33 (201)
155 PF13434 K_oxygenase: L-lysine 98.8 1.7E-08 3.7E-13 92.3 7.3 157 8-178 3-165 (341)
156 PRK08010 pyridine nucleotide-d 98.8 6.8E-08 1.5E-12 92.5 11.7 36 6-41 2-37 (441)
157 PRK14694 putative mercuric red 98.8 1.1E-07 2.4E-12 91.6 13.2 35 6-40 5-39 (468)
158 PRK12834 putative FAD-binding 98.8 1.4E-07 3E-12 92.7 13.8 36 6-41 3-38 (549)
159 PRK06327 dihydrolipoamide dehy 98.7 9.7E-08 2.1E-12 92.2 12.1 33 6-38 3-35 (475)
160 TIGR02061 aprA adenosine phosp 98.7 2.3E-07 5.1E-12 91.2 14.5 34 9-42 1-38 (614)
161 PRK06416 dihydrolipoamide dehy 98.7 1.4E-07 3E-12 91.0 12.8 35 6-40 3-37 (462)
162 PRK06116 glutathione reductase 98.7 6.8E-08 1.5E-12 92.8 10.3 34 6-39 3-36 (450)
163 TIGR01421 gluta_reduc_1 glutat 98.7 9.3E-08 2E-12 91.6 10.9 35 6-40 1-35 (450)
164 PF06039 Mqo: Malate:quinone o 98.7 1.9E-07 4.2E-12 85.7 12.2 67 107-174 177-246 (488)
165 TIGR01424 gluta_reduc_2 glutat 98.7 5.6E-08 1.2E-12 93.1 9.3 33 7-39 2-34 (446)
166 PRK07843 3-ketosteroid-delta-1 98.7 4.5E-07 9.8E-12 89.0 15.6 42 1-42 1-42 (557)
167 PRK07395 L-aspartate oxidase; 98.7 1.8E-07 3.9E-12 91.5 12.7 37 6-43 8-44 (553)
168 PRK10262 thioredoxin reductase 98.7 2.6E-07 5.5E-12 84.7 13.0 34 6-39 5-38 (321)
169 PLN02507 glutathione reductase 98.7 1.3E-07 2.7E-12 91.6 11.4 33 7-39 25-57 (499)
170 COG1053 SdhA Succinate dehydro 98.7 1.9E-07 4.1E-12 90.5 11.8 41 4-44 3-43 (562)
171 PRK12779 putative bifunctional 98.7 7.6E-08 1.6E-12 99.1 8.9 36 7-42 306-341 (944)
172 TIGR00137 gid_trmFO tRNA:m(5)U 98.7 9.9E-08 2.1E-12 88.7 8.8 103 8-122 1-108 (433)
173 PRK12837 3-ketosteroid-delta-1 98.6 9.2E-07 2E-11 86.1 15.6 37 6-43 6-42 (513)
174 COG4529 Uncharacterized protei 98.6 3.2E-07 6.9E-12 84.6 11.2 154 8-177 2-169 (474)
175 PRK14727 putative mercuric red 98.6 2.6E-07 5.7E-12 89.2 10.7 40 3-42 12-51 (479)
176 PRK12835 3-ketosteroid-delta-1 98.6 1E-06 2.3E-11 86.8 14.6 38 6-43 10-47 (584)
177 PRK13748 putative mercuric red 98.6 6.3E-07 1.4E-11 88.7 13.2 34 6-39 97-130 (561)
178 PRK09853 putative selenate red 98.6 1.9E-07 4.2E-12 95.1 9.5 36 7-42 539-574 (1019)
179 TIGR02485 CobZ_N-term precorri 98.6 4.4E-07 9.6E-12 86.7 11.4 31 12-42 1-31 (432)
180 PTZ00306 NADH-dependent fumara 98.6 1.5E-06 3.2E-11 92.3 16.3 38 6-43 408-445 (1167)
181 COG1249 Lpd Pyruvate/2-oxoglut 98.6 3.1E-07 6.7E-12 86.6 10.0 37 5-41 2-38 (454)
182 COG1233 Phytoene dehydrogenase 98.6 5.9E-08 1.3E-12 93.6 5.3 39 6-44 2-40 (487)
183 PRK13800 putative oxidoreducta 98.6 1.4E-06 2.9E-11 90.4 14.9 36 6-41 12-47 (897)
184 PRK09754 phenylpropionate diox 98.6 3.3E-07 7.1E-12 86.5 9.6 37 6-42 2-40 (396)
185 PRK07512 L-aspartate oxidase; 98.5 6.1E-07 1.3E-11 87.2 11.3 35 6-42 8-42 (513)
186 PF00070 Pyr_redox: Pyridine n 98.5 1.4E-06 3E-11 61.8 10.0 34 9-42 1-34 (80)
187 PRK06134 putative FAD-binding 98.5 9.3E-07 2E-11 87.3 12.2 37 6-42 11-47 (581)
188 PRK13512 coenzyme A disulfide 98.5 8.8E-07 1.9E-11 84.7 11.7 34 9-42 3-38 (438)
189 TIGR01438 TGR thioredoxin and 98.5 8.5E-07 1.8E-11 85.6 11.2 33 7-39 2-34 (484)
190 TIGR01350 lipoamide_DH dihydro 98.5 7E-07 1.5E-11 86.2 10.7 32 7-38 1-32 (461)
191 PRK12842 putative succinate de 98.5 3E-06 6.6E-11 83.7 15.2 38 6-43 8-45 (574)
192 PTZ00058 glutathione reductase 98.5 6.9E-07 1.5E-11 87.1 10.4 34 6-39 47-80 (561)
193 PRK07208 hypothetical protein; 98.5 1.5E-07 3.2E-12 91.3 5.7 41 4-44 1-41 (479)
194 PRK12839 hypothetical protein; 98.5 5.3E-06 1.1E-10 81.6 16.5 38 6-43 7-44 (572)
195 KOG2852 Possible oxidoreductas 98.5 1.7E-05 3.6E-10 68.1 16.7 41 4-44 7-53 (380)
196 PRK09564 coenzyme A disulfide 98.5 6.5E-07 1.4E-11 86.0 9.4 34 9-42 2-37 (444)
197 PRK13977 myosin-cross-reactive 98.5 7.3E-06 1.6E-10 78.7 16.0 39 6-44 21-63 (576)
198 PRK12844 3-ketosteroid-delta-1 98.5 3.1E-06 6.8E-11 83.1 14.0 36 7-42 6-41 (557)
199 COG0029 NadB Aspartate oxidase 98.4 1.9E-06 4E-11 79.6 11.1 34 9-43 9-42 (518)
200 PRK07845 flavoprotein disulfid 98.4 1.9E-06 4.1E-11 83.0 11.4 33 8-40 2-34 (466)
201 KOG0029 Amine oxidase [Seconda 98.4 2.6E-07 5.7E-12 88.3 5.4 40 5-44 13-52 (501)
202 PRK06912 acoL dihydrolipoamide 98.4 1.1E-06 2.4E-11 84.5 9.6 33 9-41 2-34 (458)
203 PLN02546 glutathione reductase 98.4 1.8E-06 3.9E-11 84.3 10.2 32 7-38 79-110 (558)
204 KOG2853 Possible oxidoreductas 98.4 8.6E-06 1.9E-10 71.4 12.3 38 7-44 86-127 (509)
205 PRK12778 putative bifunctional 98.3 9.8E-07 2.1E-11 90.0 7.5 37 6-42 430-466 (752)
206 TIGR01423 trypano_reduc trypan 98.3 5E-06 1.1E-10 80.2 11.3 34 6-39 2-36 (486)
207 PRK12843 putative FAD-binding 98.3 3.2E-06 6.9E-11 83.5 10.2 37 7-43 16-52 (578)
208 KOG0042 Glycerol-3-phosphate d 98.3 6.7E-06 1.5E-10 76.4 10.9 58 121-178 235-294 (680)
209 PRK04965 NADH:flavorubredoxin 98.3 6.8E-06 1.5E-10 77.1 11.4 98 7-173 141-240 (377)
210 PTZ00318 NADH dehydrogenase-li 98.3 7.3E-06 1.6E-10 78.0 11.6 37 5-41 8-44 (424)
211 PLN02568 polyamine oxidase 98.3 9.9E-07 2.1E-11 85.8 5.7 40 5-44 3-47 (539)
212 PRK12845 3-ketosteroid-delta-1 98.3 1.8E-05 3.8E-10 77.8 14.4 38 6-44 15-52 (564)
213 COG3349 Uncharacterized conser 98.3 9.7E-07 2.1E-11 82.3 5.0 37 8-44 1-37 (485)
214 PRK06292 dihydrolipoamide dehy 98.3 9.4E-07 2E-11 85.2 5.0 34 6-39 2-35 (460)
215 TIGR01372 soxA sarcosine oxida 98.3 1.1E-05 2.5E-10 84.4 13.3 36 7-42 163-198 (985)
216 COG3075 GlpB Anaerobic glycero 98.3 1.3E-06 2.8E-11 76.1 5.1 35 7-41 2-36 (421)
217 PRK12770 putative glutamate sy 98.2 4.5E-06 9.8E-11 77.5 8.7 36 7-42 18-53 (352)
218 KOG2404 Fumarate reductase, fl 98.2 1.7E-05 3.7E-10 69.1 11.2 37 8-44 10-46 (477)
219 PRK09754 phenylpropionate diox 98.2 1.2E-05 2.7E-10 75.8 11.6 98 7-174 144-243 (396)
220 PRK11883 protoporphyrinogen ox 98.2 1.3E-06 2.9E-11 84.1 5.2 36 8-43 1-38 (451)
221 TIGR03315 Se_ygfK putative sel 98.2 1.5E-06 3.2E-11 89.2 5.4 36 7-42 537-572 (1012)
222 TIGR02733 desat_CrtD C-3',4' d 98.2 1.5E-06 3.3E-11 84.5 5.4 36 8-43 2-37 (492)
223 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.8E-06 3.8E-11 79.8 5.4 36 8-43 2-37 (377)
224 COG3573 Predicted oxidoreducta 98.2 4.3E-05 9.4E-10 67.0 13.5 39 5-43 3-41 (552)
225 PRK07233 hypothetical protein; 98.2 1.5E-06 3.2E-11 83.3 5.1 36 9-44 1-36 (434)
226 TIGR02730 carot_isom carotene 98.2 1.7E-06 3.8E-11 84.0 5.3 62 111-178 229-292 (493)
227 TIGR02731 phytoene_desat phyto 98.2 3E-06 6.5E-11 81.6 6.6 60 9-68 1-73 (453)
228 TIGR01350 lipoamide_DH dihydro 98.2 1.9E-05 4E-10 76.3 12.1 101 7-175 170-272 (461)
229 KOG1335 Dihydrolipoamide dehyd 98.2 5.8E-06 1.3E-10 73.6 7.6 37 6-42 38-74 (506)
230 PLN02852 ferredoxin-NADP+ redu 98.2 2.1E-06 4.6E-11 81.9 5.3 36 7-42 26-63 (491)
231 PRK14989 nitrite reductase sub 98.2 6.5E-06 1.4E-10 84.2 9.1 36 7-42 3-42 (847)
232 KOG2844 Dimethylglycine dehydr 98.2 3.2E-05 6.9E-10 73.8 12.8 61 107-174 183-245 (856)
233 PLN02576 protoporphyrinogen ox 98.2 2.2E-06 4.8E-11 83.5 5.4 38 7-44 12-50 (496)
234 TIGR00562 proto_IX_ox protopor 98.2 2.2E-06 4.7E-11 82.9 5.2 36 8-43 3-42 (462)
235 PRK06115 dihydrolipoamide dehy 98.2 2.7E-05 5.8E-10 75.1 12.5 104 7-175 174-279 (466)
236 PLN02268 probable polyamine ox 98.2 2.4E-06 5.2E-11 81.8 5.2 37 8-44 1-37 (435)
237 PTZ00363 rab-GDP dissociation 98.2 2.4E-06 5.2E-11 80.8 5.1 41 4-44 1-41 (443)
238 COG1231 Monoamine oxidase [Ami 98.1 3.8E-06 8.2E-11 77.1 6.0 43 2-44 2-44 (450)
239 COG3634 AhpF Alkyl hydroperoxi 98.1 2.7E-06 5.9E-11 74.7 4.8 111 6-171 210-324 (520)
240 PRK05976 dihydrolipoamide dehy 98.1 3.4E-05 7.4E-10 74.6 13.0 102 8-175 181-284 (472)
241 PRK07846 mycothione reductase; 98.1 2.4E-05 5.2E-10 75.0 11.8 98 7-174 166-264 (451)
242 COG3486 IucD Lysine/ornithine 98.1 1.2E-05 2.6E-10 72.5 8.9 158 4-178 2-163 (436)
243 PRK12831 putative oxidoreducta 98.1 3.2E-06 6.9E-11 81.2 5.5 37 6-42 139-175 (464)
244 COG2509 Uncharacterized FAD-de 98.1 3.9E-05 8.5E-10 70.3 11.9 57 111-173 173-231 (486)
245 PRK06912 acoL dihydrolipoamide 98.1 3.9E-05 8.4E-10 73.9 12.8 99 8-175 171-271 (458)
246 TIGR02053 MerA mercuric reduct 98.1 2.8E-06 6E-11 82.0 4.9 33 8-40 1-33 (463)
247 PRK04965 NADH:flavorubredoxin 98.1 1.5E-05 3.2E-10 74.9 9.7 35 8-42 3-39 (377)
248 TIGR02734 crtI_fam phytoene de 98.1 2.7E-06 5.8E-11 83.0 4.6 35 10-44 1-35 (502)
249 COG0445 GidA Flavin-dependent 98.1 5.7E-06 1.2E-10 77.3 6.3 146 5-172 2-158 (621)
250 PRK06567 putative bifunctional 98.1 3.2E-06 6.9E-11 85.5 5.0 35 6-40 382-416 (1028)
251 PRK07818 dihydrolipoamide dehy 98.1 4.1E-05 9E-10 73.9 12.4 102 8-175 173-276 (466)
252 PRK07846 mycothione reductase; 98.1 2.3E-05 5.1E-10 75.1 10.5 32 7-40 1-32 (451)
253 PRK05249 soluble pyridine nucl 98.1 3.7E-05 8.1E-10 74.2 12.0 99 7-175 175-275 (461)
254 TIGR03452 mycothione_red mycot 98.1 1.5E-05 3.3E-10 76.4 9.1 32 7-40 2-33 (452)
255 TIGR03169 Nterm_to_SelD pyridi 98.1 1E-05 2.2E-10 75.6 7.6 33 9-41 1-36 (364)
256 COG1232 HemY Protoporphyrinoge 98.1 4.4E-06 9.5E-11 78.2 5.0 61 9-69 2-76 (444)
257 PTZ00188 adrenodoxin reductase 98.1 5.4E-06 1.2E-10 78.1 5.4 37 6-42 38-75 (506)
258 COG1148 HdrA Heterodisulfide r 98.1 5E-06 1.1E-10 76.2 4.9 37 7-43 124-160 (622)
259 PRK06416 dihydrolipoamide dehy 98.1 3.3E-05 7.2E-10 74.6 11.0 100 8-175 173-275 (462)
260 COG0562 Glf UDP-galactopyranos 98.0 6.4E-06 1.4E-10 71.8 5.2 37 8-44 2-38 (374)
261 TIGR01316 gltA glutamate synth 98.0 7.4E-06 1.6E-10 78.5 5.9 37 6-42 132-168 (449)
262 PTZ00052 thioredoxin reductase 98.0 5.5E-06 1.2E-10 80.4 4.9 33 7-39 5-37 (499)
263 PRK12769 putative oxidoreducta 98.0 6.5E-06 1.4E-10 82.7 5.5 37 6-42 326-362 (654)
264 PRK12775 putative trifunctiona 98.0 6.1E-06 1.3E-10 86.1 5.4 36 7-42 430-465 (1006)
265 COG1249 Lpd Pyruvate/2-oxoglut 98.0 6.4E-05 1.4E-09 71.1 11.7 102 8-177 174-277 (454)
266 PRK05329 anaerobic glycerol-3- 98.0 7.9E-06 1.7E-10 76.8 5.4 35 7-41 2-36 (422)
267 KOG3923 D-aspartate oxidase [A 98.0 0.00036 7.7E-09 60.4 14.6 46 7-52 3-55 (342)
268 KOG2665 Predicted FAD-dependen 98.0 1.9E-05 4.1E-10 68.6 7.0 159 5-174 46-259 (453)
269 TIGR02053 MerA mercuric reduct 98.0 7.3E-05 1.6E-09 72.2 11.9 101 8-175 167-269 (463)
270 COG1252 Ndh NADH dehydrogenase 98.0 5.2E-05 1.1E-09 70.1 10.2 37 6-42 2-40 (405)
271 PRK07251 pyridine nucleotide-d 98.0 7.7E-05 1.7E-09 71.5 11.8 97 7-174 157-255 (438)
272 PRK06370 mercuric reductase; V 98.0 9.8E-05 2.1E-09 71.3 12.5 101 8-175 172-274 (463)
273 TIGR02374 nitri_red_nirB nitri 98.0 2.7E-05 5.8E-10 79.7 9.0 33 10-42 1-36 (785)
274 TIGR02462 pyranose_ox pyranose 98.0 1.6E-05 3.4E-10 76.9 6.9 36 8-43 1-36 (544)
275 PRK12810 gltD glutamate syntha 98.0 1E-05 2.2E-10 78.0 5.4 36 7-42 143-178 (471)
276 PF00732 GMC_oxred_N: GMC oxid 98.0 6.9E-06 1.5E-10 74.4 3.9 36 8-43 1-37 (296)
277 TIGR03452 mycothione_red mycot 97.9 8.5E-05 1.8E-09 71.3 11.5 97 8-174 170-267 (452)
278 PRK06116 glutathione reductase 97.9 8E-05 1.7E-09 71.6 11.3 100 7-175 167-268 (450)
279 PRK06467 dihydrolipoamide dehy 97.9 9.7E-05 2.1E-09 71.4 11.8 102 8-175 175-277 (471)
280 PF13434 K_oxygenase: L-lysine 97.9 6E-05 1.3E-09 69.2 9.7 141 6-170 189-339 (341)
281 TIGR02732 zeta_caro_desat caro 97.9 1.1E-05 2.3E-10 77.9 5.0 35 9-43 1-35 (474)
282 PRK06327 dihydrolipoamide dehy 97.9 0.00012 2.6E-09 70.9 12.2 102 8-175 184-287 (475)
283 PLN02529 lysine-specific histo 97.9 1.3E-05 2.8E-10 80.1 5.5 37 6-42 159-195 (738)
284 PRK11749 dihydropyrimidine deh 97.9 1.3E-05 2.9E-10 77.1 5.3 36 7-42 140-175 (457)
285 PRK06292 dihydrolipoamide dehy 97.9 0.00013 2.8E-09 70.5 12.1 101 7-175 169-271 (460)
286 PLN02676 polyamine oxidase 97.9 1.5E-05 3.3E-10 76.9 5.6 39 6-44 25-64 (487)
287 PLN02507 glutathione reductase 97.9 0.00011 2.3E-09 71.5 11.3 98 8-175 204-303 (499)
288 PLN02487 zeta-carotene desatur 97.9 1.5E-05 3.3E-10 77.7 5.3 62 8-69 76-150 (569)
289 PRK02106 choline dehydrogenase 97.9 1.6E-05 3.4E-10 78.6 5.3 37 5-41 3-40 (560)
290 PRK12814 putative NADPH-depend 97.9 1.7E-05 3.7E-10 79.5 5.5 36 7-42 193-228 (652)
291 PLN02328 lysine-specific histo 97.9 1.8E-05 3.8E-10 79.6 5.4 38 6-43 237-274 (808)
292 TIGR01318 gltD_gamma_fam gluta 97.9 1.8E-05 3.9E-10 76.2 5.4 36 7-42 141-176 (467)
293 PRK07845 flavoprotein disulfid 97.9 0.00017 3.6E-09 69.6 12.0 98 8-175 178-277 (466)
294 TIGR01424 gluta_reduc_2 glutat 97.9 0.00013 2.9E-09 70.0 11.3 99 7-175 166-266 (446)
295 TIGR03378 glycerol3P_GlpB glyc 97.9 1.8E-05 4E-10 73.5 5.1 34 8-41 1-34 (419)
296 PRK14989 nitrite reductase sub 97.9 0.00012 2.6E-09 75.2 11.4 101 7-174 145-247 (847)
297 TIGR02374 nitri_red_nirB nitri 97.8 0.00014 3E-09 74.6 11.6 98 7-173 140-239 (785)
298 TIGR01421 gluta_reduc_1 glutat 97.8 0.00015 3.3E-09 69.6 11.0 100 8-175 167-268 (450)
299 PRK12809 putative oxidoreducta 97.8 2.5E-05 5.4E-10 78.2 5.5 36 7-42 310-345 (639)
300 PTZ00153 lipoamide dehydrogena 97.8 2.4E-05 5.2E-10 77.7 5.2 34 6-39 115-148 (659)
301 KOG2960 Protein involved in th 97.8 3E-05 6.4E-10 63.4 4.8 37 8-44 77-115 (328)
302 KOG0685 Flavin-containing amin 97.8 2.8E-05 6E-10 71.6 5.1 39 6-44 20-59 (498)
303 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.00023 5E-09 68.0 11.2 35 7-41 137-171 (427)
304 COG0493 GltD NADPH-dependent g 97.8 2.5E-05 5.4E-10 73.9 4.4 36 7-42 123-158 (457)
305 TIGR03140 AhpF alkyl hydropero 97.8 0.00038 8.3E-09 68.0 12.8 97 7-172 352-450 (515)
306 PRK14694 putative mercuric red 97.8 0.00031 6.6E-09 67.9 11.9 97 7-175 178-276 (468)
307 PRK09564 coenzyme A disulfide 97.8 0.00026 5.7E-09 68.0 11.3 35 7-41 149-183 (444)
308 PRK08010 pyridine nucleotide-d 97.7 0.00027 5.9E-09 67.8 11.3 97 7-174 158-256 (441)
309 TIGR01292 TRX_reduct thioredox 97.7 0.00072 1.6E-08 61.2 13.6 98 7-173 141-239 (300)
310 COG2303 BetA Choline dehydroge 97.7 3.2E-05 6.8E-10 75.6 4.9 41 1-41 1-41 (542)
311 KOG4716 Thioredoxin reductase 97.7 0.00068 1.5E-08 59.8 12.2 145 6-172 18-173 (503)
312 KOG0404 Thioredoxin reductase 97.7 9.8E-05 2.1E-09 61.1 6.5 35 7-41 8-42 (322)
313 COG2907 Predicted NAD/FAD-bind 97.7 3.6E-05 7.7E-10 67.9 4.1 38 6-44 7-44 (447)
314 PRK12771 putative glutamate sy 97.7 4.6E-05 9.9E-10 75.4 5.4 36 7-42 137-172 (564)
315 TIGR01317 GOGAT_sm_gam glutama 97.7 5.1E-05 1.1E-09 73.4 5.3 36 7-42 143-178 (485)
316 PTZ00153 lipoamide dehydrogena 97.7 0.00053 1.1E-08 68.3 12.4 34 8-41 313-346 (659)
317 PTZ00052 thioredoxin reductase 97.7 0.00045 9.7E-09 67.2 11.6 97 8-175 183-281 (499)
318 KOG1800 Ferredoxin/adrenodoxin 97.7 5.6E-05 1.2E-09 67.5 4.8 37 6-42 19-57 (468)
319 PRK14727 putative mercuric red 97.7 0.00044 9.4E-09 67.1 11.5 96 8-175 189-286 (479)
320 PRK13512 coenzyme A disulfide 97.6 0.00043 9.4E-09 66.3 11.0 34 8-41 149-182 (438)
321 TIGR01438 TGR thioredoxin and 97.6 0.00059 1.3E-08 66.1 11.7 32 8-39 181-212 (484)
322 TIGR01423 trypano_reduc trypan 97.6 0.00054 1.2E-08 66.3 11.4 100 7-175 187-291 (486)
323 KOG1276 Protoporphyrinogen oxi 97.6 6.6E-05 1.4E-09 68.1 4.7 37 7-43 11-49 (491)
324 PTZ00058 glutathione reductase 97.6 0.00056 1.2E-08 67.1 11.6 101 7-175 237-339 (561)
325 PRK15317 alkyl hydroperoxide r 97.6 0.00096 2.1E-08 65.3 13.0 97 7-172 351-449 (517)
326 COG0446 HcaD Uncharacterized N 97.6 0.00061 1.3E-08 64.7 11.1 35 8-42 137-171 (415)
327 PLN03000 amine oxidase 97.6 9.1E-05 2E-09 74.7 5.5 38 7-44 184-221 (881)
328 KOG3851 Sulfide:quinone oxidor 97.6 0.0001 2.2E-09 64.3 5.0 107 6-173 38-146 (446)
329 PRK13748 putative mercuric red 97.6 0.00069 1.5E-08 67.2 11.5 32 8-39 271-302 (561)
330 PRK13984 putative oxidoreducta 97.6 9.8E-05 2.1E-09 73.7 5.3 37 6-42 282-318 (604)
331 KOG1335 Dihydrolipoamide dehyd 97.5 0.0005 1.1E-08 61.7 8.8 105 8-175 212-317 (506)
332 PLN02976 amine oxidase 97.5 0.00013 2.9E-09 76.5 5.2 37 7-43 693-729 (1713)
333 KOG2311 NAD/FAD-utilizing prot 97.5 0.0012 2.6E-08 61.0 10.5 147 6-171 27-185 (679)
334 PRK10262 thioredoxin reductase 97.4 0.0037 8E-08 57.3 13.6 35 7-41 146-180 (321)
335 TIGR01810 betA choline dehydro 97.4 0.00014 3E-09 71.5 3.9 33 9-41 1-34 (532)
336 PLN02546 glutathione reductase 97.4 0.0018 4E-08 63.5 11.5 100 7-175 252-353 (558)
337 KOG1336 Monodehydroascorbate/f 97.4 0.0015 3.3E-08 60.5 10.0 101 7-174 213-315 (478)
338 PLN02785 Protein HOTHEAD 97.4 0.00021 4.5E-09 70.5 4.8 35 6-41 54-88 (587)
339 PRK12831 putative oxidoreducta 97.4 0.0013 2.9E-08 63.3 10.2 35 7-41 281-315 (464)
340 PTZ00318 NADH dehydrogenase-li 97.4 0.0018 3.9E-08 61.8 11.0 34 8-41 174-221 (424)
341 KOG0399 Glutamate synthase [Am 97.3 0.00021 4.5E-09 72.1 4.3 35 8-42 1786-1820(2142)
342 TIGR01316 gltA glutamate synth 97.3 0.0021 4.5E-08 61.8 10.5 34 8-41 273-306 (449)
343 PRK12770 putative glutamate sy 97.3 0.0031 6.6E-08 58.6 11.3 33 8-40 173-206 (352)
344 COG1206 Gid NAD(FAD)-utilizing 97.3 0.00026 5.6E-09 62.1 3.8 36 6-41 2-37 (439)
345 TIGR03143 AhpF_homolog putativ 97.1 0.0084 1.8E-07 59.3 12.5 35 7-41 143-177 (555)
346 PF06100 Strep_67kDa_ant: Stre 97.1 0.012 2.6E-07 55.4 12.6 37 7-43 2-42 (500)
347 KOG0405 Pyridine nucleotide-di 97.0 0.005 1.1E-07 54.8 9.0 35 6-40 19-53 (478)
348 PF01210 NAD_Gly3P_dh_N: NAD-d 96.8 0.0017 3.7E-08 52.6 4.4 32 9-40 1-32 (157)
349 KOG1238 Glucose dehydrogenase/ 96.8 0.0012 2.7E-08 63.6 4.1 37 6-42 56-93 (623)
350 PRK12778 putative bifunctional 96.8 0.0089 1.9E-07 61.4 10.2 34 8-41 571-605 (752)
351 PRK11749 dihydropyrimidine deh 96.8 0.0098 2.1E-07 57.4 10.0 35 7-41 273-308 (457)
352 PRK12814 putative NADPH-depend 96.8 0.0085 1.8E-07 60.4 9.8 35 7-41 323-358 (652)
353 COG1252 Ndh NADH dehydrogenase 96.7 0.0079 1.7E-07 55.9 8.2 45 123-177 222-268 (405)
354 TIGR03862 flavo_PP4765 unchara 96.7 0.0099 2.2E-07 55.1 8.8 38 318-355 337-374 (376)
355 PRK14106 murD UDP-N-acetylmura 96.6 0.0034 7.3E-08 60.5 5.4 36 5-40 3-38 (450)
356 PF02737 3HCDH_N: 3-hydroxyacy 96.6 0.0028 6.1E-08 52.5 4.1 33 9-41 1-33 (180)
357 PRK12769 putative oxidoreducta 96.5 0.017 3.8E-07 58.3 10.4 34 8-41 469-503 (654)
358 PRK06249 2-dehydropantoate 2-r 96.5 0.004 8.6E-08 56.8 5.3 36 5-40 3-38 (313)
359 PRK02705 murD UDP-N-acetylmura 96.5 0.0029 6.4E-08 61.1 4.7 34 9-42 2-35 (459)
360 KOG4254 Phytoene desaturase [C 96.5 0.0022 4.8E-08 58.9 3.4 35 6-40 13-47 (561)
361 COG0569 TrkA K+ transport syst 96.5 0.0033 7.1E-08 54.1 4.4 61 8-68 1-65 (225)
362 PRK07066 3-hydroxybutyryl-CoA 96.5 0.0042 9.1E-08 56.3 5.3 41 1-41 1-41 (321)
363 TIGR02352 thiamin_ThiO glycine 96.5 0.15 3.3E-06 46.8 15.8 60 107-174 133-195 (337)
364 TIGR03169 Nterm_to_SelD pyridi 96.5 0.022 4.7E-07 53.2 10.3 29 8-36 146-180 (364)
365 TIGR01318 gltD_gamma_fam gluta 96.5 0.02 4.3E-07 55.3 10.2 35 7-41 282-317 (467)
366 TIGR03197 MnmC_Cterm tRNA U-34 96.5 0.14 2.9E-06 48.2 15.6 60 107-173 131-191 (381)
367 PRK01438 murD UDP-N-acetylmura 96.5 0.0039 8.4E-08 60.6 5.2 35 7-41 16-50 (480)
368 PRK07530 3-hydroxybutyryl-CoA 96.5 0.0039 8.4E-08 56.2 4.8 37 5-41 2-38 (292)
369 PRK12779 putative bifunctional 96.5 0.024 5.2E-07 59.3 11.0 34 8-41 448-481 (944)
370 KOG1336 Monodehydroascorbate/f 96.4 0.021 4.6E-07 53.2 9.1 34 7-40 74-109 (478)
371 PRK07819 3-hydroxybutyryl-CoA 96.4 0.0049 1.1E-07 55.3 4.8 39 1-41 1-39 (286)
372 PRK06719 precorrin-2 dehydroge 96.4 0.0078 1.7E-07 48.5 5.4 32 6-37 12-43 (157)
373 KOG2495 NADH-dehydrogenase (ub 96.3 0.04 8.8E-07 50.6 10.1 36 6-41 54-89 (491)
374 PF03721 UDPG_MGDP_dh_N: UDP-g 96.3 0.0047 1E-07 51.3 3.9 34 8-41 1-34 (185)
375 PF00743 FMO-like: Flavin-bind 96.3 0.015 3.2E-07 56.9 7.9 36 6-41 182-217 (531)
376 KOG2495 NADH-dehydrogenase (ub 96.3 0.022 4.7E-07 52.4 8.2 51 115-172 277-329 (491)
377 PF02558 ApbA: Ketopantoate re 96.2 0.0076 1.6E-07 48.4 4.8 31 10-40 1-31 (151)
378 PRK05675 sdhA succinate dehydr 96.2 0.047 1E-06 54.1 11.1 64 111-174 126-191 (570)
379 PRK12810 gltD glutamate syntha 96.2 0.041 8.9E-07 53.3 10.4 34 7-40 281-315 (471)
380 TIGR01470 cysG_Nterm siroheme 96.1 0.012 2.5E-07 49.8 5.4 35 6-40 8-42 (205)
381 PF13241 NAD_binding_7: Putati 96.1 0.0055 1.2E-07 45.6 3.0 36 5-40 5-40 (103)
382 TIGR01372 soxA sarcosine oxida 96.1 0.025 5.3E-07 59.9 8.8 34 7-40 317-351 (985)
383 PTZ00082 L-lactate dehydrogena 96.1 0.012 2.6E-07 53.6 5.6 39 4-42 3-42 (321)
384 PRK05708 2-dehydropantoate 2-r 96.0 0.0097 2.1E-07 54.0 4.9 33 8-40 3-35 (305)
385 PRK06129 3-hydroxyacyl-CoA deh 96.0 0.0085 1.8E-07 54.5 4.4 33 9-41 4-36 (308)
386 PRK08293 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 53.4 4.8 34 8-41 4-37 (287)
387 PF00996 GDI: GDP dissociation 95.9 0.01 2.2E-07 56.0 4.7 37 6-42 3-39 (438)
388 TIGR03315 Se_ygfK putative sel 95.9 0.072 1.6E-06 55.7 11.1 35 7-41 666-702 (1012)
389 COG3486 IucD Lysine/ornithine 95.8 0.13 2.9E-06 47.1 11.1 55 123-178 291-346 (436)
390 PRK06718 precorrin-2 dehydroge 95.8 0.017 3.7E-07 48.7 5.2 35 5-39 8-42 (202)
391 PRK09853 putative selenate red 95.8 0.075 1.6E-06 55.4 10.4 35 7-41 668-704 (1019)
392 PRK12775 putative trifunctiona 95.8 0.072 1.6E-06 56.3 10.6 35 7-41 571-606 (1006)
393 PRK05808 3-hydroxybutyryl-CoA 95.7 0.014 3E-07 52.4 4.6 34 8-41 4-37 (282)
394 KOG1346 Programmed cell death 95.7 0.035 7.5E-07 50.8 6.9 42 123-171 406-448 (659)
395 PRK06035 3-hydroxyacyl-CoA deh 95.7 0.015 3.2E-07 52.5 4.7 34 8-41 4-37 (291)
396 PF01262 AlaDh_PNT_C: Alanine 95.7 0.019 4.1E-07 47.0 4.9 36 6-41 19-54 (168)
397 PRK11064 wecC UDP-N-acetyl-D-m 95.6 0.015 3.2E-07 55.1 4.6 34 8-41 4-37 (415)
398 COG1251 NirB NAD(P)H-nitrite r 95.6 0.033 7.1E-07 54.8 6.8 35 7-41 145-179 (793)
399 PRK08268 3-hydroxy-acyl-CoA de 95.6 0.017 3.7E-07 56.1 5.1 41 1-41 1-41 (507)
400 PLN02545 3-hydroxybutyryl-CoA 95.6 0.018 4E-07 52.0 4.8 34 8-41 5-38 (295)
401 PRK06522 2-dehydropantoate 2-r 95.5 0.017 3.8E-07 52.3 4.4 32 9-40 2-33 (304)
402 PRK12809 putative oxidoreducta 95.5 0.1 2.2E-06 52.6 10.2 35 7-41 451-486 (639)
403 PRK14618 NAD(P)H-dependent gly 95.5 0.023 5E-07 52.2 5.2 33 9-41 6-38 (328)
404 PRK12921 2-dehydropantoate 2-r 95.5 0.02 4.3E-07 52.0 4.6 30 9-38 2-31 (305)
405 PRK09260 3-hydroxybutyryl-CoA 95.4 0.02 4.3E-07 51.6 4.3 34 8-41 2-35 (288)
406 TIGR02730 carot_isom carotene 95.4 0.7 1.5E-05 45.1 15.4 37 8-44 1-37 (493)
407 PRK08229 2-dehydropantoate 2-r 95.4 0.023 5.1E-07 52.5 4.9 32 9-40 4-35 (341)
408 PF13478 XdhC_C: XdhC Rossmann 95.3 0.021 4.5E-07 44.7 3.7 32 10-41 1-32 (136)
409 PF00899 ThiF: ThiF family; I 95.3 0.023 5E-07 44.6 4.1 35 7-41 2-37 (135)
410 PF01488 Shikimate_DH: Shikima 95.3 0.039 8.4E-07 43.3 5.3 35 6-40 11-46 (135)
411 PRK04308 murD UDP-N-acetylmura 95.3 0.032 6.9E-07 53.7 5.6 37 5-41 3-39 (445)
412 PRK09424 pntA NAD(P) transhydr 95.3 0.021 4.5E-07 55.0 4.2 35 7-41 165-199 (509)
413 TIGR00518 alaDH alanine dehydr 95.2 0.027 5.8E-07 52.4 4.8 34 7-40 167-200 (370)
414 PRK04148 hypothetical protein; 95.2 0.021 4.5E-07 44.2 3.4 33 8-41 18-50 (134)
415 PF02254 TrkA_N: TrkA-N domain 95.2 0.028 6.1E-07 42.7 4.1 32 10-41 1-32 (116)
416 PRK06130 3-hydroxybutyryl-CoA 95.2 0.03 6.5E-07 51.0 4.9 34 8-41 5-38 (311)
417 PF00056 Ldh_1_N: lactate/mala 95.2 0.04 8.6E-07 43.6 5.0 34 8-41 1-37 (141)
418 TIGR02734 crtI_fam phytoene de 95.2 0.66 1.4E-05 45.4 14.6 62 111-178 219-282 (502)
419 cd01080 NAD_bind_m-THF_DH_Cycl 95.2 0.039 8.5E-07 44.9 5.0 36 5-40 42-78 (168)
420 PRK02472 murD UDP-N-acetylmura 95.1 0.032 7E-07 53.7 5.2 37 5-41 3-39 (447)
421 COG0771 MurD UDP-N-acetylmuram 95.1 0.032 6.8E-07 52.7 4.8 36 7-42 7-42 (448)
422 cd05292 LDH_2 A subgroup of L- 95.0 0.037 8E-07 50.2 4.8 33 9-41 2-36 (308)
423 TIGR02354 thiF_fam2 thiamine b 95.0 0.044 9.4E-07 46.2 4.9 35 6-40 20-55 (200)
424 PRK07502 cyclohexadienyl dehyd 95.0 0.034 7.4E-07 50.5 4.6 40 1-41 1-42 (307)
425 PLN02852 ferredoxin-NADP+ redu 94.9 0.38 8.3E-06 46.5 11.7 22 8-29 167-188 (491)
426 PRK00066 ldh L-lactate dehydro 94.9 0.054 1.2E-06 49.2 5.6 35 7-41 6-42 (315)
427 cd00401 AdoHcyase S-adenosyl-L 94.9 0.039 8.4E-07 51.8 4.7 35 7-41 202-236 (413)
428 PRK14620 NAD(P)H-dependent gly 94.8 0.041 8.9E-07 50.5 4.7 32 9-40 2-33 (326)
429 PRK04690 murD UDP-N-acetylmura 94.8 0.042 9E-07 53.1 4.9 36 6-41 7-42 (468)
430 COG0492 TrxB Thioredoxin reduc 94.7 0.81 1.7E-05 41.4 12.6 36 7-42 143-178 (305)
431 PRK15116 sulfur acceptor prote 94.7 0.053 1.1E-06 47.7 4.9 36 6-41 29-65 (268)
432 PRK07531 bifunctional 3-hydrox 94.5 0.051 1.1E-06 52.9 4.9 34 8-41 5-38 (495)
433 PLN02676 polyamine oxidase 94.5 0.5 1.1E-05 46.0 11.5 58 110-174 223-288 (487)
434 PF03446 NAD_binding_2: NAD bi 94.5 0.063 1.4E-06 43.7 4.5 34 8-41 2-35 (163)
435 TIGR00562 proto_IX_ox protopor 94.5 1.7 3.7E-05 42.0 15.3 55 112-173 226-280 (462)
436 COG1251 NirB NAD(P)H-nitrite r 94.5 0.3 6.5E-06 48.4 9.6 127 6-195 2-132 (793)
437 PRK06505 enoyl-(acyl carrier p 94.4 0.066 1.4E-06 47.7 5.0 39 1-39 1-42 (271)
438 cd01075 NAD_bind_Leu_Phe_Val_D 94.4 0.092 2E-06 44.3 5.6 35 5-39 26-60 (200)
439 PRK12475 thiamine/molybdopteri 94.4 0.062 1.4E-06 49.3 4.9 36 6-41 23-59 (338)
440 COG1004 Ugd Predicted UDP-gluc 94.4 0.053 1.1E-06 49.6 4.2 34 8-41 1-34 (414)
441 TIGR01763 MalateDH_bact malate 94.4 0.07 1.5E-06 48.3 5.1 34 8-41 2-36 (305)
442 PRK08306 dipicolinate synthase 94.4 0.064 1.4E-06 48.3 4.8 36 6-41 151-186 (296)
443 PRK06079 enoyl-(acyl carrier p 94.4 0.072 1.6E-06 46.8 5.1 39 1-39 1-42 (252)
444 PRK14619 NAD(P)H-dependent gly 94.3 0.076 1.6E-06 48.3 5.3 35 7-41 4-38 (308)
445 PRK00094 gpsA NAD(P)H-dependen 94.3 0.056 1.2E-06 49.6 4.5 33 9-41 3-35 (325)
446 PRK12771 putative glutamate sy 94.3 0.26 5.6E-06 49.0 9.3 35 7-41 267-302 (564)
447 TIGR02356 adenyl_thiF thiazole 94.3 0.079 1.7E-06 44.8 4.9 37 5-41 19-56 (202)
448 PF01593 Amino_oxidase: Flavin 94.3 0.047 1E-06 52.0 4.0 47 126-179 226-272 (450)
449 TIGR03026 NDP-sugDHase nucleot 94.3 0.051 1.1E-06 51.6 4.1 33 9-41 2-34 (411)
450 COG0446 HcaD Uncharacterized N 94.2 0.15 3.3E-06 48.2 7.4 33 10-42 1-35 (415)
451 PF01593 Amino_oxidase: Flavin 94.2 1.9 4.1E-05 40.9 15.0 28 17-44 1-28 (450)
452 PRK03369 murD UDP-N-acetylmura 94.2 0.065 1.4E-06 52.1 4.8 34 7-40 12-45 (488)
453 TIGR02964 xanthine_xdhC xanthi 94.1 0.082 1.8E-06 46.1 4.8 36 6-41 99-134 (246)
454 PRK06223 malate dehydrogenase; 94.1 0.08 1.7E-06 48.1 4.9 34 8-41 3-37 (307)
455 TIGR00936 ahcY adenosylhomocys 94.1 0.087 1.9E-06 49.3 5.1 36 6-41 194-229 (406)
456 PRK11883 protoporphyrinogen ox 94.1 5.7 0.00012 38.1 18.0 58 111-175 221-278 (451)
457 PRK07417 arogenate dehydrogena 94.1 0.062 1.3E-06 48.1 4.0 33 9-41 2-34 (279)
458 PRK00683 murD UDP-N-acetylmura 94.0 0.076 1.6E-06 50.6 4.9 35 7-41 3-37 (418)
459 TIGR00561 pntA NAD(P) transhyd 94.0 0.078 1.7E-06 51.0 4.7 35 7-41 164-198 (511)
460 PRK01710 murD UDP-N-acetylmura 93.9 0.08 1.7E-06 51.1 4.8 34 8-41 15-48 (458)
461 PRK12828 short chain dehydroge 93.9 0.11 2.3E-06 45.1 5.2 41 1-41 1-42 (239)
462 PRK02006 murD UDP-N-acetylmura 93.9 0.092 2E-06 51.3 5.2 36 5-40 5-40 (498)
463 PF10727 Rossmann-like: Rossma 93.9 0.041 8.9E-07 42.4 2.2 34 6-39 9-42 (127)
464 cd05291 HicDH_like L-2-hydroxy 93.8 0.096 2.1E-06 47.5 4.8 33 9-41 2-36 (306)
465 PTZ00117 malate dehydrogenase; 93.8 0.11 2.4E-06 47.4 5.2 36 6-41 4-40 (319)
466 cd05311 NAD_bind_2_malic_enz N 93.8 0.11 2.3E-06 44.8 4.8 35 6-40 24-61 (226)
467 PRK12549 shikimate 5-dehydroge 93.7 0.11 2.4E-06 46.4 5.0 34 7-40 127-161 (284)
468 COG1893 ApbA Ketopantoate redu 93.7 0.084 1.8E-06 47.8 4.2 34 8-41 1-34 (307)
469 PRK05690 molybdopterin biosynt 93.7 0.12 2.5E-06 45.2 4.9 36 6-41 31-67 (245)
470 TIGR02853 spore_dpaA dipicolin 93.6 0.11 2.3E-06 46.6 4.7 36 6-41 150-185 (287)
471 TIGR01915 npdG NADPH-dependent 93.6 0.11 2.3E-06 44.7 4.6 33 9-41 2-35 (219)
472 cd01078 NAD_bind_H4MPT_DH NADP 93.6 0.14 3E-06 43.1 5.1 34 6-39 27-61 (194)
473 PRK07233 hypothetical protein; 93.6 3.5 7.5E-05 39.4 15.4 56 111-173 198-255 (434)
474 TIGR02355 moeB molybdopterin s 93.6 0.12 2.7E-06 44.9 4.9 36 6-41 23-59 (240)
475 KOG2755 Oxidoreductase [Genera 93.6 0.059 1.3E-06 46.3 2.7 33 9-41 1-35 (334)
476 PRK07688 thiamine/molybdopteri 93.5 0.11 2.5E-06 47.6 4.9 35 6-40 23-58 (339)
477 cd05293 LDH_1 A subgroup of L- 93.5 0.13 2.8E-06 46.6 5.2 35 7-41 3-39 (312)
478 cd05191 NAD_bind_amino_acid_DH 93.5 0.2 4.3E-06 35.7 5.2 33 6-38 22-55 (86)
479 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.5 0.091 2E-06 51.0 4.3 35 7-41 5-39 (503)
480 PRK05562 precorrin-2 dehydroge 93.5 0.14 2.9E-06 43.7 4.8 34 6-39 24-57 (223)
481 PRK05653 fabG 3-ketoacyl-(acyl 93.5 0.14 3E-06 44.6 5.1 37 5-41 3-40 (246)
482 COG1748 LYS9 Saccharopine dehy 93.5 0.12 2.5E-06 48.0 4.7 34 8-41 2-36 (389)
483 COG1063 Tdh Threonine dehydrog 93.4 0.11 2.3E-06 48.2 4.4 33 9-41 171-204 (350)
484 COG0686 Ald Alanine dehydrogen 93.4 0.073 1.6E-06 46.9 3.0 35 7-41 168-202 (371)
485 PRK06172 short chain dehydroge 93.3 0.16 3.5E-06 44.5 5.4 41 1-41 1-42 (253)
486 PRK12939 short chain dehydroge 93.3 0.16 3.4E-06 44.4 5.2 40 1-40 1-41 (250)
487 PRK05476 S-adenosyl-L-homocyst 93.3 0.14 3.1E-06 48.2 5.1 36 6-41 211-246 (425)
488 cd00757 ThiF_MoeB_HesA_family 93.3 0.14 3E-06 44.3 4.7 36 6-41 20-56 (228)
489 PRK13394 3-hydroxybutyrate deh 93.2 0.17 3.7E-06 44.6 5.4 40 1-40 1-41 (262)
490 PRK09496 trkA potassium transp 93.2 0.11 2.4E-06 50.1 4.4 33 9-41 2-34 (453)
491 PLN02494 adenosylhomocysteinas 93.2 0.18 3.9E-06 47.9 5.5 36 6-41 253-288 (477)
492 PRK08644 thiamine biosynthesis 93.1 0.17 3.7E-06 43.1 5.0 36 6-41 27-63 (212)
493 PRK08328 hypothetical protein; 93.1 0.17 3.6E-06 43.8 5.0 36 6-41 26-62 (231)
494 cd01487 E1_ThiF_like E1_ThiF_l 93.1 0.16 3.6E-06 41.7 4.7 32 9-40 1-33 (174)
495 KOG2304 3-hydroxyacyl-CoA dehy 93.1 0.12 2.6E-06 43.3 3.7 36 6-41 10-45 (298)
496 PLN02353 probable UDP-glucose 93.0 0.13 2.8E-06 49.5 4.5 33 9-41 3-37 (473)
497 PRK00421 murC UDP-N-acetylmura 93.0 0.14 3.1E-06 49.4 4.9 35 7-41 7-42 (461)
498 cd01483 E1_enzyme_family Super 93.0 0.18 4E-06 39.9 4.7 33 9-41 1-34 (143)
499 PLN02240 UDP-glucose 4-epimera 92.9 0.19 4E-06 46.6 5.4 36 5-40 3-39 (352)
500 PF00670 AdoHcyase_NAD: S-aden 92.9 0.18 3.9E-06 40.5 4.4 37 5-41 21-57 (162)
No 1
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=336.62 Aligned_cols=363 Identities=28% Similarity=0.430 Sum_probs=252.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
|+.++|+||||||||+++|+.|++.|++|+||||.+.+.. ..|.++.++++++++|+++|+... . ..+.+......
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~g~gi~l~~~~~~~l~~lg~~~~-~-~~~~~~~~~~~ 79 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD--GRGAGIVLQPELLRALAEAGVALP-A-DIGVPSRERIY 79 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC--CCCceeEeCHHHHHHHHHcCCCcc-c-ccccCccceEE
Confidence 5578999999999999999999999999999999875422 357789999999999999988542 2 22222221111
Q ss_pred ceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 85 RAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
...++.. . .....+...+.|..+.+.|.+.+....++++++|++++.+ +..++++ +++|++ +++|+|
T Consensus 80 ~~~~g~~-~-----~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--~~ad~v 146 (386)
T PRK07236 80 LDRDGRV-V-----QRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD--GDRVTAR---FADGRR--ETADLL 146 (386)
T ss_pred EeCCCCE-e-----eccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec--CCeEEEE---ECCCCE--EEeCEE
Confidence 1111111 0 1111222335788899999887754349999999999854 4457776 567775 899999
Q ss_pred EeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc-----
Q 035933 165 VAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK----- 239 (405)
Q Consensus 165 V~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----- 239 (405)
|+|||.+|.+|+.+.+...+.|.++..|++++......... .. .......++.+++.+++.||++.+
T Consensus 147 IgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (386)
T PRK07236 147 VGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEA-----RA---ALRDRFTFQLGPGSHILGYPVPGEDGSTE 218 (386)
T ss_pred EECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchh-----hh---hcccceEEEEcCCceEEEEECCCCCCCcC
Confidence 99999999999999776678889999998886543221110 00 011223444567777888887642
Q ss_pred ----ceeEEEEEecccccccccccccccCCccc-----cccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccC
Q 035933 240 ----RLNWIWYITQPELACFILPFICIRGGSAT-----MKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCD 310 (405)
Q Consensus 240 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (405)
..+|.|+.+.+.....-.-+.+.....+. .....+..+++.+.....|.+.+.+++......+.+.++...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (386)
T PRK07236 219 PGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPFVQAIFDLE 298 (386)
T ss_pred CCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCchhhhhhccc
Confidence 24677877654311000000000000110 112234455554444445889899988887665555555433
Q ss_pred CCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhc
Q 035933 311 PLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKL 390 (405)
Q Consensus 311 ~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~ 390 (405)
.++|..+|++|+|||||+++|+.|||+|+||+||..|+++|.... .++..+|..|+++|+++...++..|+.++++++
T Consensus 299 -~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~ 376 (386)
T PRK07236 299 -VPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-GDIDAALAAWEAERLAVGAAIVARGRRLGARLQ 376 (386)
T ss_pred -CcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999998753 458899999999999999999999999999887
Q ss_pred CCCC
Q 035933 391 GLPL 394 (405)
Q Consensus 391 ~~~~ 394 (405)
....
T Consensus 377 ~~~~ 380 (386)
T PRK07236 377 AQGR 380 (386)
T ss_pred hcCC
Confidence 5543
No 2
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=2.1e-44 Score=340.83 Aligned_cols=365 Identities=21% Similarity=0.230 Sum_probs=253.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccC--Ccccc--
Q 035933 8 PKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITL--PLTID-- 82 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~--~~~~~-- 82 (405)
.+|+|||||||||++|+.|+++| ++|+||||.+.++ ..|.++.++++++++|+++|+.+ .+..... +....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~---~~G~gi~l~~~~~~~L~~lg~~~-~~~~~~~~~~~~~~~~ 76 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG---EVGAGVSFGANAVRAIVGLGLGE-AYTQVADSTPAPWQDI 76 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC---CCccceeeCccHHHHHHHcCChh-HHHHHhcCCCccCcce
Confidence 37999999999999999999998 6999999998764 37889999999999999999844 3333221 11100
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeee
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGD 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d 162 (405)
.....++..............+...++|..|.+.|.+.++...++++++|++++.+ +..|++. +++|++ +++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~--~~~~~v~---~~~g~~--~~ad 149 (414)
T TIGR03219 77 WFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQ--AEEVQVL---FTDGTE--YRCD 149 (414)
T ss_pred eEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEec--CCcEEEE---EcCCCE--EEee
Confidence 01111111100000011112334568999999999999865558899999999853 3457776 557765 8999
Q ss_pred EEEeecCCcccccccccC-----CCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 163 LLVAADGSRSSVRQTFLP-----DSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 163 ~vV~AdG~~S~vr~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
+||+|||.+|.+|+.+.+ ...+.+.++..|+++++.+..........+. +.......++.+++.+++.+|+.
T Consensus 150 ~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~ 226 (414)
T TIGR03219 150 LLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLD---EHLVDVPQMYLGLDGHILTFPVR 226 (414)
T ss_pred EEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccccc---ccccccceEEEcCCCeEEEEECC
Confidence 999999999999998853 2346788889999987654321100000000 01111223455777888889998
Q ss_pred Ccce-eEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCc
Q 035933 238 YKRL-NWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIY 316 (405)
Q Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (405)
++.. +|.++...+.......| ....+ ......+++.+. +..|++.+.+++........+.++...+.+.|+
T Consensus 227 ~g~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~l~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~w~ 298 (414)
T TIGR03219 227 QGRLINVVAFISDRSQPKPTWP----SDTPW---VREATQREMLDA-FAGWGDAARALLECIPAPTLWALHDLAELPGYV 298 (414)
T ss_pred CCcEEEEEEEEcCcccccCCCC----CCCcc---cCccCHHHHHHH-hcCCCHHHHHHHHhCCCCCceeeeeccccccee
Confidence 8775 44444432211100000 00011 111223344343 467899999988877666666777677788899
Q ss_pred cccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhh--CCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 317 WDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERW--GPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 317 ~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~--~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
.+|++|||||||.++|+.|||+|+||+||..|+++|... ...+++.+|+.|+++|++++.++++.|+.++++++..++
T Consensus 299 ~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~ 378 (414)
T TIGR03219 299 HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELRDP 378 (414)
T ss_pred eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999999999999864 245789999999999999999999999999998886553
No 3
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=2.8e-44 Score=338.26 Aligned_cols=351 Identities=21% Similarity=0.236 Sum_probs=246.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+||||||||+++|+.|+++|++|+|+||.+.+.. .|+++.++++++++|+++|+.+ .+...+.... .....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~---~g~gi~l~~~~~~~L~~~Gl~~-~l~~~~~~~~--~~~~~ 76 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE---VGAGLQLAPNAMRHLERLGVAD-RLSGTGVTPK--ALYLM 76 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc---CCccceeChhHHHHHHHCCChH-HHhhcccCcc--eEEEe
Confidence 6899999999999999999999999999999987643 6789999999999999999854 4443333221 12222
Q ss_pred cCccc--eeee-e----cccCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCcee
Q 035933 88 DREKN--ICRV-L----ARDENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVII 157 (405)
Q Consensus 88 ~~~~~--~~~~-~----~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~ 157 (405)
++... .... . ......++..++|..|.+.|.+.+. .++ ++++++|++++. ++..+++++.+..++++
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~--~~~~v~v~~~~~~~~~~- 153 (400)
T PRK06475 77 DGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ--TGNSITATIIRTNSVET- 153 (400)
T ss_pred cCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--CCCceEEEEEeCCCCcE-
Confidence 22210 1010 0 0111334557899999999999884 367 999999999974 44457666543333444
Q ss_pred EEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 158 DVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 158 ~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
+++|+||+|||.+|.+|+++.. ....|.++.+|++.++.+..... +...++.. .....+++++.+++.+|++
T Consensus 154 -~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~g~~~~~~~~p~~ 225 (400)
T PRK06475 154 -VSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPAS-----FLSAMPEH-KAVSAWLGNKAHFIAYPVK 225 (400)
T ss_pred -EecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcchh-----hhhhcccC-CceEEEEcCCCEEEEEEcc
Confidence 8999999999999999999844 45678888899988765432211 11111221 2234556788899999998
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcc
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW 317 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (405)
++...+++....+... ...+...... +.+..++..|.+.+..++........+.++...+.+.|..
T Consensus 226 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~----~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~ 291 (400)
T PRK06475 226 GGKFFNFVAITGGENP----------GEVWSKTGDK----AHLKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGP 291 (400)
T ss_pred CCcEEEEEEEEcCCCC----------cccCCCCCCH----HHHHHHhcCCChHHHHHHhcCCceeECcCcccCCCcceec
Confidence 7755443333322111 0011111122 2234456778999888887766555566665555444456
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGL 392 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~ 392 (405)
+|++|||||||+++|+.|||+|+||+||..|+++|.. .++..+|+.|++.|++++..++..|+.....++..
T Consensus 292 grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~---~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 363 (400)
T PRK06475 292 DRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDS---DDQSAGLKRFDSVRKERIAAVAKRGQLNRFAYHAT 363 (400)
T ss_pred CCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999964 35789999999999999999999998666555543
No 4
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=6.8e-44 Score=333.60 Aligned_cols=341 Identities=24% Similarity=0.303 Sum_probs=246.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||||+++|+.|+++|++|+||||++.+.. .+.++.+++++++.|+.+|+.+ .+...+.+.. .....
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~gi~l~~~~~~~L~~~gl~~-~~~~~~~~~~--~~~~~ 74 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE---VGAGIGIGDNVIKKLGNHDLAK-GIKNAGQILS--TMNLL 74 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc---cccceeeChHHHHHHHhcChHH-HHHhcCCccc--ceeEE
Confidence 3899999999999999999999999999999998753 5789999999999999998744 3333333322 12222
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEee
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAA 167 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~A 167 (405)
+.................+.++|..|.+.|.+.++...++++++|++++. ++..++++ +++|+. +++|+||+|
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~--~~~~v~v~---~~~g~~--~~~~~viga 147 (373)
T PRK06753 75 DDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIEN--ETDKVTIH---FADGES--EAFDLCIGA 147 (373)
T ss_pred cCCCCEEeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEe--cCCcEEEE---ECCCCE--EecCEEEEC
Confidence 22111111111122334567999999999999887534999999999984 34567776 567765 899999999
Q ss_pred cCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcceeEEEEE
Q 035933 168 DGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRLNWIWYI 247 (405)
Q Consensus 168 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 247 (405)
||.+|.+|+.+.+.....+.++.++++.++...... .......+.++++++++|..++..+|++.+
T Consensus 148 dG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~ 213 (373)
T PRK06753 148 DGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKL--------------PDCAKEYWGTKGRFGIVPLLNNQAYWFITI 213 (373)
T ss_pred CCcchHHHHHhCCCCCceEcceEEEEEEeccccccC--------------ccceEEEEcCCCEEEEEEcCCCeEEEEEEe
Confidence 999999999987766667778888887765432111 011122334566778899988887777765
Q ss_pred ecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc--cceeeecccCCCCcCccccEEEEcc
Q 035933 248 TQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE--PFLNLIADCDPLTQIYWDNVVLIGD 325 (405)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~lvGD 325 (405)
..+.... .......+ ++ .+.+..|.+.+.+++..... .+.+.++...+.++|..+|++||||
T Consensus 214 ~~~~~~~------------~~~~~~~~---~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGD 277 (373)
T PRK06753 214 NAKERDP------------KYSSFGKP---HL-QAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGD 277 (373)
T ss_pred ccccCCc------------ccccccHH---HH-HHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEec
Confidence 4332220 00011122 22 23345677888777765432 2334455566677888899999999
Q ss_pred ccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 326 AAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 326 Aah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
|||.++|+.|||+|+||+||..|+++|.. .+..++|+.|+++|++++...++.|+.++++++...+
T Consensus 278 AAh~~~P~~GqG~n~ai~Da~~L~~~L~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 343 (373)
T PRK06753 278 AAHATTPNMGQGAGQAMEDAIVLANCLNA---YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESK 343 (373)
T ss_pred ccccCCCCcCccHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCc
Confidence 99999999999999999999999999964 3689999999999999999999999999998876443
No 5
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=338.76 Aligned_cols=364 Identities=23% Similarity=0.253 Sum_probs=250.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||||+++|+.|+++|++|+||||.+.++ +.|.++.+++++++.|+++|+.+ .+...+.+.....+...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~g~gi~l~p~~~~~L~~lgl~~-~l~~~~~~~~~~~~~~~ 76 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR---PLGVGINLLPHAVRELAELGLLD-ALDAIGIRTRELAYFNR 76 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc---ccCcceeeCchHHHHHHHCCCHH-HHHhhCCCCcceEEEcC
Confidence 489999999999999999999999999999998764 36889999999999999999854 44444433221111111
Q ss_pred cCccceeee---ecccCCcccccccHHHHHHHHHhcCC--Cc-e-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEe
Q 035933 88 DREKNICRV---LARDENFNYLQAHWTDLHGLIYNTLP--VE-I-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVV 160 (405)
Q Consensus 88 ~~~~~~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~~--~~-~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~ 160 (405)
.+.. .... .......+.+.++|..|++.|.+.+. .+ . ++++++|++++.+++ .+.+.+.+..+|+..+++
T Consensus 77 ~g~~-~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~~ 153 (413)
T PRK07538 77 HGQR-IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--VTVVFLGDRAGGDLVSVR 153 (413)
T ss_pred CCCE-EeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--ceEEEEeccCCCccceEE
Confidence 2211 1111 11122344567999999999998763 24 4 999999999985443 355554434445555699
Q ss_pred eeEEEeecCCcccccccccCCC-CCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc
Q 035933 161 GDLLVAADGSRSSVRQTFLPDS-KLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK 239 (405)
Q Consensus 161 ~d~vV~AdG~~S~vr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (405)
||+||+|||.+|.+|+++.+.. .+.+.+...|++..+.+.... .....+.-.++..+.+||+..+
T Consensus 154 adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~~~~g~~~~~~~~~p~~~~ 219 (413)
T PRK07538 154 GDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLT--------------GRSMVMAGHLDGKLVVYPISEP 219 (413)
T ss_pred eeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccC--------------CCcEEEEcCCCCEEEEEECCCC
Confidence 9999999999999999987655 567888888888776542210 1111222223556788888653
Q ss_pred -----ceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcCh---HHHHHHHhcCccceeeecccCC
Q 035933 240 -----RLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAP---EHATVIKETKEPFLNLIADCDP 311 (405)
Q Consensus 240 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 311 (405)
...+.|++....... .. .....+ ..+...+++.+. +..|.+ .+.+++......+.+.+....|
T Consensus 220 ~~~~g~~~~~w~~~~~~~~~---~~--~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~ 290 (413)
T PRK07538 220 VDADGRQLINWVAEVRVDDA---GA--PRREDW---NRPGDLEDFLPH-FADWRFDWLDVPALIRAAEAIYEYPMVDRDP 290 (413)
T ss_pred cccCCceEEEEEEEEcCCcc---CC--Cccccc---CCccCHHHHHHH-hcCCCCCcccHHHHHhcCcceeeccccccCC
Confidence 123334433222110 00 000011 112223344333 233433 2556666555556666776778
Q ss_pred CCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHH-----hh
Q 035933 312 LTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRR-----VG 386 (405)
Q Consensus 312 ~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~-----~~ 386 (405)
.++|..+|++|||||||.++|++|||+|+||+||..|+++|.+. .+..++|+.|+++|++++.+++..|+. +.
T Consensus 291 ~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~--~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~ 368 (413)
T PRK07538 291 LPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH--GDPEAALAAYEAERRPATAQIVLANRLNGPEGVL 368 (413)
T ss_pred CCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhHHHHHHHHHhhhcChHHHH
Confidence 88999999999999999999999999999999999999999875 358999999999999999999999999 55
Q ss_pred hhhcCCCCCCcccceec
Q 035933 387 LIKLGLPLPDRGLLIQT 403 (405)
Q Consensus 387 ~~~~~~~~~~~~~~~~~ 403 (405)
.+...+.+..++.+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~ 385 (413)
T PRK07538 369 QLVEERAPGGFADIDDV 385 (413)
T ss_pred HHHHhhCCCCccchhhc
Confidence 77777788887776653
No 6
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=6.8e-43 Score=329.49 Aligned_cols=346 Identities=25% Similarity=0.263 Sum_probs=245.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
+..||+||||||||+++|+.|++.|++|+||||.+.+.. .|+++.+++++.++|+++|+.+ .+.....+.. ...
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~---~g~gi~l~~~~~~~l~~lg~~~-~~~~~~~~~~--~~~ 76 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE---IGAGIQLGPNAFSALDALGVGE-AARQRAVFTD--HLT 76 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc---ccceeeeCchHHHHHHHcCChH-HHHhhccCCc--ceE
Confidence 468999999999999999999999999999999987643 6789999999999999999854 3333332221 111
Q ss_pred eecC--ccceeeee-----cccCCcccccccHHHHHHHHHhcCC-C-ce-EEecceEEEEEEecCCCeEEEEEeecCCCc
Q 035933 86 AVDR--EKNICRVL-----ARDENFNYLQAHWTDLHGLIYNTLP-V-EI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDV 155 (405)
Q Consensus 86 ~~~~--~~~~~~~~-----~~~~~~~~~~~~r~~l~~~L~~~~~-~-~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~ 155 (405)
..+. ........ ....+.+...++|..|.+.|.+.+. . ++ +++++++.+++. ++..++++ +.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~--~~~~v~v~---~~~g~ 151 (396)
T PRK08163 77 MMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ--DGDGVTVF---DQQGN 151 (396)
T ss_pred EEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--CCCceEEE---EcCCC
Confidence 2111 11111111 1112334567899999999999884 3 47 999999999984 34456666 55676
Q ss_pred eeEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEE
Q 035933 156 IIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYE 235 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 235 (405)
+ +.+|+||+|||.+|.+|+.+.+. .+.+.+...+++.++.+..... .. ......+.+++.+++.+|
T Consensus 152 ~--~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~---------~~--~~~~~~~~g~~~~~~~~p 217 (396)
T PRK08163 152 R--WTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPED---------LR--INAPVLWAGPHCHLVHYP 217 (396)
T ss_pred E--EecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcch---------hc--cCccEEEEcCCceEEEEE
Confidence 5 89999999999999999987543 4566777778777764322110 00 112234456777888899
Q ss_pred eeCcc-eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCc
Q 035933 236 LMYKR-LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQ 314 (405)
Q Consensus 236 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (405)
..++. .+++|....+... .+. ......+++.+ .+..|.+.+.+++........+.+....|.++
T Consensus 218 ~~~g~~~~~~~~~~~~~~~------------~~~--~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (396)
T PRK08163 218 LRGGEQYNLVVTFHSREQE------------EWG--VKDGSKEEVLS-YFEGIHPRPRQMLDKPTSWKRWATADREPVAK 282 (396)
T ss_pred ecCCeEEEEEEEECCCCCc------------ccc--cCCCCHHHHHH-HHcCCChHHHHHHhcCCceeEccccCCCcccc
Confidence 97765 3455554433221 000 00111223333 34567888887776654433344555667788
Q ss_pred CccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCC
Q 035933 315 IYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGL 392 (405)
Q Consensus 315 ~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~ 392 (405)
|..+|++|||||||.++|+.|||+|+||+||..|+++|.... .++.++|+.|+++|++++..++..|+.+..+++..
T Consensus 283 ~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~-~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~~ 359 (396)
T PRK08163 283 WSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCD-GDAEAAFALYESVRIPRTARVVLSAREMGRIYHAK 359 (396)
T ss_pred cccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 888999999999999999999999999999999999997643 56899999999999999999999999999988753
No 7
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=2.7e-42 Score=320.51 Aligned_cols=343 Identities=14% Similarity=0.113 Sum_probs=228.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.||+||||||+|+++|+.|+++|++|+||||++.++. .|.++.+.++++++|+++|+.+ .+.....+.........
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~---~g~~i~~~~~a~~~L~~lGl~~-~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRP---GGQAIDVRGPALDVLERMGLLA-AAQEHKTRIRGASFVDR 77 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC---CceeeeeCchHHHHHHhcCCHH-HHHhhccCccceEEEeC
Confidence 4899999999999999999999999999999988643 5778899999999999999744 44444333322112112
Q ss_pred cCccceeeee-cc----cCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 88 DREKNICRVL-AR----DENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 88 ~~~~~~~~~~-~~----~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
++.. ..... .. ....+.+.+.|.+|.+.|.+.+..++ ++++++|++++. ++..++++ +++|++ +++
T Consensus 78 ~g~~-~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~--~~~~v~v~---~~dg~~--~~a 149 (372)
T PRK05868 78 DGNE-LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQD--DGDSVRVT---FERAAA--REF 149 (372)
T ss_pred CCCE-EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEe--cCCeEEEE---ECCCCe--EEe
Confidence 2211 11110 00 01122346789999999988877788 999999999974 44567777 567776 889
Q ss_pred eEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcce
Q 035933 162 DLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRL 241 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (405)
|+||+|||.+|.+|+.+++........+..+......+... +. .....+..+++.++.++|..++..
T Consensus 150 dlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~-~~~~~~~~g~~~~~~~~~~~~~~~ 216 (372)
T PRK05868 150 DLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFL------------EL-DYWQTWHYGDSTMAGVYSARNNTE 216 (372)
T ss_pred CEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCC------------CC-CcceEEEecCCcEEEEEecCCCCc
Confidence 99999999999999998654333222333344443333211 10 112222347777888888876543
Q ss_pred -eEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHh-hcC-hHHHHHHHhcCccceeeecccCCCCcCccc
Q 035933 242 -NWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEK-ICA-PEHATVIKETKEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (405)
..++.+...... ......+...+.+.+.+.. .|. +.+.+.+..... +........++++|+.+
T Consensus 217 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~-~~~~~~~~~~~~~w~~g 282 (372)
T PRK05868 217 ARAALAFMDTELR-------------IDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPD-FYFDEMSQILMDRWSRG 282 (372)
T ss_pred eEEEEEEecCCcc-------------cccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCc-eeeccceEEecCCCCCC
Confidence 333333222111 0001112234444444332 454 455554433322 22221224456788999
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhc
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKL 390 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~ 390 (405)
||+|||||||+++|+.|||+|+||+||+.|+++|.... .+++++|+.|++.++|++.+.+.........+.
T Consensus 283 rv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~~-~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~ 353 (372)
T PRK05868 283 RVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAAG-DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGA 353 (372)
T ss_pred CeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhHHHHHhhhhhhccCCccc
Confidence 99999999999999999999999999999999997753 568999999999999999998887776665554
No 8
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=6.5e-42 Score=329.78 Aligned_cols=350 Identities=20% Similarity=0.225 Sum_probs=246.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC-CCCCCCCcceeeCccHHHHHHHhccC-hhhhhcccCCccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP-PTGNPTGAGIALHLLSQKIVKSWLHQ-PDLLHNITLPLTIDQ 83 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 83 (405)
+..+|+||||||+|+++|+.|+++|++|+||||.+.. +.....++++.++++++++|+++|+. .+.+...+.......
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 4589999999999999999999999999999998642 11111235789999999999999863 234444333211101
Q ss_pred cceecC-cc-ceeee--ec--ccCCcc-cccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 84 NRAVDR-EK-NICRV--LA--RDENFN-YLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 84 ~~~~~~-~~-~~~~~--~~--~~~~~~-~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
....++ .. ..... .. ...+.+ .+.++|..|.+.|.+.+...+++++++|.+++. ++..++++ +.+|++
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~--~~d~VtV~---~~dG~t 234 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFED--SGDKVTVV---LENGQR 234 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEE--eCCEEEEE---ECCCCE
Confidence 011111 00 00000 00 111222 357899999999999887666889999999984 34567776 567765
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEe
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYEL 236 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 236 (405)
+++|+||+|||.+|.+|+.+++...+.+.++.+|++.++...... . ......+.+++.++..++.
T Consensus 235 --i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~-----------~--~~~~~~~~G~~~~~v~~~v 299 (668)
T PLN02927 235 --YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADI-----------E--SVGYRVFLGHKQYFVSSDV 299 (668)
T ss_pred --EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccc-----------c--ccceEEEEcCCeEEEEEcC
Confidence 899999999999999999998777788999999999886532110 0 0112334466667777777
Q ss_pred eCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc--cceeeecccCCCCc
Q 035933 237 MYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE--PFLNLIADCDPLTQ 314 (405)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 314 (405)
.++...|+++...+... . .......+++ .+.+..|.+.+.+++..... ...+.++...|...
T Consensus 300 ~~g~~~~~~f~~~p~~~------------~---~~~~~~~e~L-~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~ 363 (668)
T PLN02927 300 GGGKMQWYAFHEEPAGG------------A---DAPNGMKKRL-FEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFT 363 (668)
T ss_pred CCCeEEEEEEEECCccc------------c---ccchhHHHHH-HHHhccCCHHHHHHHHhCccccceeeeEEeccCCCc
Confidence 76666655554433211 0 0112233333 44456799999888876543 34567777778788
Q ss_pred CccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--------CCcHHHHHHHHHhhcccchHHHHHHHHHhh
Q 035933 315 IYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--------PENLHSALEEHKSVRLPVTNKQVLHSRRVG 386 (405)
Q Consensus 315 ~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--------~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 386 (405)
|..+|++|+|||||+++|+.|||+|+||+||..|+++|.+.. +.++.++|+.|+++|++++..++..|+...
T Consensus 364 W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~ 443 (668)
T PLN02927 364 WGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAA 443 (668)
T ss_pred cccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999997641 245889999999999999999999988776
Q ss_pred hhhcC
Q 035933 387 LIKLG 391 (405)
Q Consensus 387 ~~~~~ 391 (405)
..+..
T Consensus 444 ~~~~~ 448 (668)
T PLN02927 444 IMAST 448 (668)
T ss_pred HHHHH
Confidence 66543
No 9
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=5.8e-42 Score=322.16 Aligned_cols=343 Identities=17% Similarity=0.128 Sum_probs=232.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||+|+++|+.|+++|++|+||||.+... ..+.++.++++++++|+++|+.. .+...+.+... ...+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~g~~~~l~~~~~~~l~~lGl~~-~l~~~~~~~~~--~~~~ 74 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR---TGGYMVDFWGVGYEVAKRMGITD-QLREAGYQIEH--VRSV 74 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc---CCCeEEeccCcHHHHHHHcCCHH-HHHhccCCccc--eEEE
Confidence 489999999999999999999999999999997653 25678889999999999999854 44444443322 2222
Q ss_pred cCccceeeee-----cccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 88 DREKNICRVL-----ARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 88 ~~~~~~~~~~-----~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
+........+ ....+.+++.+.|..|.+.|.+.+..++ ++++++|.+++.+ +..|+++ +++|+. +++
T Consensus 75 ~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--~~~ 147 (391)
T PRK07588 75 DPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEH--RDGVRVT---FERGTP--RDF 147 (391)
T ss_pred cCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEEC--CCeEEEE---ECCCCE--EEe
Confidence 2211111111 1112234567999999999999877778 9999999999843 4467776 567876 789
Q ss_pred eEEEeecCCcccccccccCCCC--CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc
Q 035933 162 DLLVAADGSRSSVRQTFLPDSK--LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK 239 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (405)
|+||+|||.+|.+|+.+..... ..+.+...+..... .. .+.....+..+..++.++..+|+.++
T Consensus 148 d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~--~~------------~~~~~~~~~~~~~~g~~~~~~p~~~~ 213 (391)
T PRK07588 148 DLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVD--GY------------RPRDERTYVLYNEVGRQVARVALRGD 213 (391)
T ss_pred CEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcC--CC------------CCCCCceEEEEeCCCCEEEEEecCCC
Confidence 9999999999999998643222 22333333322211 10 01111223344466778889999888
Q ss_pred ceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc--cceeeecccCCCCcCcc
Q 035933 240 RLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE--PFLNLIADCDPLTQIYW 317 (405)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 317 (405)
...+.|....+... ...+.+...+.+.+.+..|.+...+++..... ..........+.++|..
T Consensus 214 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 278 (391)
T PRK07588 214 RTLFLFIFRAEHDN---------------PPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSR 278 (391)
T ss_pred CeEEEEEEEcCCcc---------------ccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCcccc
Confidence 76666655433221 01122233333334344444433333322211 11111122335677888
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
+|++|||||||.++|+.|||+|+||+||..|+++|.... ...+.+|+.|++.|++++..++..++.+.++++..+
T Consensus 279 grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~-~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 353 (391)
T PRK07588 279 GRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG-GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKT 353 (391)
T ss_pred CCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Confidence 999999999999999999999999999999999998643 457899999999999999999999999998886544
No 10
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-42 Score=325.92 Aligned_cols=346 Identities=16% Similarity=0.144 Sum_probs=222.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC---CCcceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP---TGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
+.+||+||||||+|+++|+.|+++|++|+|+||.+.+..... .-++..++++++++|+++|+.+........+..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~-- 79 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYH-- 79 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCcccc--
Confidence 468999999999999999999999999999999987543110 124567899999999999986533333233322
Q ss_pred ccceecCccceeeeec-ccCCc--ccccccHHHHHHHHHhcCCC--ce-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 83 QNRAVDREKNICRVLA-RDENF--NYLQAHWTDLHGLIYNTLPV--EI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~--~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
....++........+. ...+. ..+.++|..|++.|.+.+.+ ++ ++++++|.+++.++ ..++++ +.+|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g~~ 154 (400)
T PRK08013 80 GMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLT---LKDGSM 154 (400)
T ss_pred EEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEE---EcCCCE
Confidence 2222322210001111 11122 23579999999999998853 67 99999999998543 456666 457765
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCCC-cCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEE
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKLR-YTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYE 235 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 235 (405)
+++|+||+|||.+|.+|+.+....... |... .+...+..+. +. ....+..+.+++.++++|
T Consensus 155 --i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~-~~~~~v~~~~--------------~~-~~~~~~~~~~~g~~~~~p 216 (400)
T PRK08013 155 --LTARLVVGADGANSWLRNKADIPLTFWDYQHH-ALVATIRTEE--------------PH-DAVARQVFHGDGILAFLP 216 (400)
T ss_pred --EEeeEEEEeCCCCcHHHHHcCCCccccccCcE-EEEEEEeccC--------------CC-CCEEEEEEcCCCCEEEEE
Confidence 899999999999999999986443322 2322 2333332211 11 111233344555777889
Q ss_pred eeCcc-eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCc
Q 035933 236 LMYKR-LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQ 314 (405)
Q Consensus 236 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (405)
..++. ..++|..+.+..+ .. ..... +.+.+.+...+.+.+... ........+.+. ....+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~------------~~-~~~~~---~~~~~~l~~~~~~~l~~~-~~~~~~~~~~l~-~~~~~~ 278 (400)
T PRK08013 217 LSDPHLCSIVWSLSPEEAQ------------RM-QQAPE---EEFNRALAIAFDNRLGLC-ELESERQVFPLT-GRYARQ 278 (400)
T ss_pred CCCCCeEEEEEEcCHHHHH------------HH-HcCCH---HHHHHHHHHHHhHhhCce-EecCCccEEecc-eeeccc
Confidence 87654 4666665433221 00 01111 222223222232222211 011111122222 223578
Q ss_pred CccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--CCc--HHHHHHHHHhhcccchHHHHHHHHHhhhhhc
Q 035933 315 IYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--PEN--LHSALEEHKSVRLPVTNKQVLHSRRVGLIKL 390 (405)
Q Consensus 315 ~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--~~~--~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~ 390 (405)
|+.+|++|+|||||.++|++|||+|+||+||..|+++|.... ..+ ...+|+.|+++|++++..++..++.+.+++.
T Consensus 279 ~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~ 358 (400)
T PRK08013 279 FAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFA 358 (400)
T ss_pred ccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888999999999999999999999999999999999997542 222 2457999999999999999999999988886
Q ss_pred CCCC
Q 035933 391 GLPL 394 (405)
Q Consensus 391 ~~~~ 394 (405)
...+
T Consensus 359 ~~~~ 362 (400)
T PRK08013 359 GNNP 362 (400)
T ss_pred CCch
Confidence 5443
No 11
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=1.9e-41 Score=318.32 Aligned_cols=350 Identities=20% Similarity=0.215 Sum_probs=227.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
+.++||+||||||||+++|+.|+++|++|+|+||.+.++. .+++..++++++++|+++|+.+. +............
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~---~~~~~~l~~~~~~~L~~lGl~~~-~~~~~~~~~~~~~ 78 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRA---QNGADLLKPSGIGVVRAMGLLDD-VFAAGGLRRDAMR 78 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccC---CCcccccCccHHHHHHHcCCHHH-HHhcccccccceE
Confidence 4568999999999999999999999999999999998753 33456699999999999998543 3332221111011
Q ss_pred ceecCccceeee-ecccCC-cccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEE
Q 035933 85 RAVDREKNICRV-LARDEN-FNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDV 159 (405)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~-~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~ 159 (405)
...+++. .... ...... .....++|.+|.+.|.+.+. .++ ++++++|++++.++++..+.|+ +++|++ +
T Consensus 79 ~~~~g~~-~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~~--~ 152 (388)
T PRK07045 79 LYHDKEL-IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT---LSDGER--V 152 (388)
T ss_pred EecCCcE-EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE---eCCCCE--E
Confidence 1122221 1111 111111 12345789999999999873 467 9999999999876554444565 557764 8
Q ss_pred eeeEEEeecCCcccccccccC-CC-CCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 160 VGDLLVAADGSRSSVRQTFLP-DS-KLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 160 ~~d~vV~AdG~~S~vr~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
++|+||+|||.+|.+|+++.+ .. ...+.....+ +.+...... + .....+...++++.+++|..
T Consensus 153 ~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~p~~ 217 (388)
T PRK07045 153 APTVLVGADGARSMIRDDVLRMPAERVPYATPMAF-GTIALTDSV------------R--ECNRLYVDSNQGLAYFYPIG 217 (388)
T ss_pred ECCEEEECCCCChHHHHHhhCCCcccCCCCcceeE-EEEeccCCc------------c--ccceEEEcCCCceEEEEEcC
Confidence 999999999999999997532 21 2223332222 333222110 0 01111222335567788988
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc--cceeeecccCCCCcC
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE--PFLNLIADCDPLTQI 315 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 315 (405)
++...++|..+.+... .+...... +++.+.+.+.+.+.+.+.+..... .+........+.++|
T Consensus 218 ~~~~~~~~~~~~~~~~------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (388)
T PRK07045 218 DQATRLVVSFPADEMQ------------GYLADTTR---TKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRY 282 (388)
T ss_pred CCcEEEEEEeccccch------------hccCCCCH---HHHHHHHhhhcCccchHHHhccCcccccceeecCccccccc
Confidence 7777777766543222 01111112 223333333333444333332221 111111123345677
Q ss_pred ccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 316 YWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 316 ~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
..+|++|||||||.++|++|||+|+||+||..|+++|.... .....++|+.|+++|+++...++..++.+.+.++...
T Consensus 283 ~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~ 362 (388)
T PRK07045 283 HKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATTYHDRA 362 (388)
T ss_pred cCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccch
Confidence 88999999999999999999999999999999999998753 2357899999999999999999999999999987653
Q ss_pred C
Q 035933 394 L 394 (405)
Q Consensus 394 ~ 394 (405)
+
T Consensus 363 ~ 363 (388)
T PRK07045 363 A 363 (388)
T ss_pred h
Confidence 3
No 12
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=4e-41 Score=315.25 Aligned_cols=340 Identities=24% Similarity=0.239 Sum_probs=233.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..||+||||||||+++|+.|++.|++|+||||.+.+.. .|.++.+++++++.|+++++.+ .+...+.+........
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~g~~l~~~~~~~l~~~gl~~-~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV---YGAGITLQGNALRALRELGVLD-ECLEAGFGFDGVDLFD 79 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc---CCceeeecHHHHHHHHHcCCHH-HHHHhCCCccceEEEC
Confidence 47999999999999999999999999999999987643 5789999999999999998754 3333333332111111
Q ss_pred ecCccceeee-ecc--cCC-cccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEe
Q 035933 87 VDREKNICRV-LAR--DEN-FNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVV 160 (405)
Q Consensus 87 ~~~~~~~~~~-~~~--~~~-~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~ 160 (405)
.++.. .... ... ... .....+.|..+.+.|.+.+. .++ ++++++|.+++.+ +..+++. +.+|++ +.
T Consensus 80 ~~g~~-~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~~~v~---~~~g~~--~~ 151 (375)
T PRK06847 80 PDGTL-LAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQD--DDGVTVT---FSDGTT--GR 151 (375)
T ss_pred CCCCE-EEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCEEEEE---EcCCCE--EE
Confidence 11111 1110 000 011 12356889999999999884 577 9999999999853 3456666 457765 89
Q ss_pred eeEEEeecCCcccccccccCC-CCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc
Q 035933 161 GDLLVAADGSRSSVRQTFLPD-SKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK 239 (405)
Q Consensus 161 ~d~vV~AdG~~S~vr~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (405)
+|+||+|||.+|.+|+.+.+. ..+.+.+...|++.++.+... ....++.+++..+.++|..++
T Consensus 152 ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~p~~~~ 215 (375)
T PRK06847 152 YDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEV----------------DRSLMYLGPTTKAGVVPLSED 215 (375)
T ss_pred cCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCc----------------cceEEEeCCCcEEEEEcCCCC
Confidence 999999999999999988543 346677777777765543210 112344566677788888776
Q ss_pred ceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcCh-HHHHHHHhcC---ccceeeecccCCCCcC
Q 035933 240 RLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAP-EHATVIKETK---EPFLNLIADCDPLTQI 315 (405)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~ 315 (405)
...+++..+.+... ....+.+.+.+.+....|.+ .+..+..... ....+.+....+..+|
T Consensus 216 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (375)
T PRK06847 216 LMYLFVTEPRPDNP----------------RIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPW 279 (375)
T ss_pred eEEEEEeccCcccc----------------cCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCc
Confidence 55443332221111 11233334444555555654 4444433221 1112222323334567
Q ss_pred ccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCC
Q 035933 316 YWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGL 392 (405)
Q Consensus 316 ~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~ 392 (405)
..+|++|||||||.++|+.|||+|+||+||..|+++|.+. ..+.++|+.|+++|++++..++..|+.++......
T Consensus 280 ~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~--~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~ 354 (375)
T PRK06847 280 HRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH--DSLEAALQAYYARRWERCRMVVEASARIGRIEIEG 354 (375)
T ss_pred cCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCC
Confidence 8899999999999999999999999999999999999863 56889999999999999999999999999886543
No 13
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=6.5e-42 Score=320.17 Aligned_cols=346 Identities=21% Similarity=0.187 Sum_probs=233.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
.+||+||||||+|+++|+.|++.|++|+||||.+.. ....++++.++++++++|+++|+. +.+.....+... ....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~--~~~~~r~~~l~~~~~~~L~~lG~~-~~i~~~~~~~~~-~~~~ 77 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRE--LLERGRGIALSPNALRALERLGLW-DRLEALGVPPLH-VMVV 77 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccc--cccCceeeeecHhHHHHHHHcCCh-hhhhhccCCcee-eEEE
Confidence 479999999999999999999999999999998221 123568999999999999999984 355554443222 1222
Q ss_pred ecCcc-ce-eeeecccCCcccccccHHHHHHHHHhcCC-C-ce-EEecceEEEEEEecCCCeEEEEEeecC-CCceeEEe
Q 035933 87 VDREK-NI-CRVLARDENFNYLQAHWTDLHGLIYNTLP-V-EI-VFWGHLYLTFCISHDKSTVNVKAKNLR-TDVIIDVV 160 (405)
Q Consensus 87 ~~~~~-~~-~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~-~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~-~g~~~~~~ 160 (405)
..+.. .. ............+.++|..|.+.|.+.+. . ++ ++++++|+.++.++ ..++++ ++ +|++ ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~--~~v~v~---l~~dG~~--~~ 150 (387)
T COG0654 78 DDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG--DGVTVT---LSFDGET--LD 150 (387)
T ss_pred ecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC--CceEEE---EcCCCcE--Ee
Confidence 22211 01 11111222445678999999999999995 3 47 99999999998654 455555 44 7774 99
Q ss_pred eeEEEeecCCccccccccc-CCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc
Q 035933 161 GDLLVAADGSRSSVRQTFL-PDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK 239 (405)
Q Consensus 161 ~d~vV~AdG~~S~vr~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (405)
||+||+|||.+|.+|+.+. ............+...+..+ .+. ....+..+.+.+.+.++|++++
T Consensus 151 a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~p~~~~ 215 (387)
T COG0654 151 ADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE--------------EPH-EGRAGERFTHAGPFALLPLPDN 215 (387)
T ss_pred cCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC--------------CCC-CCeEEEEecCCCceEEEecCCC
Confidence 9999999999999999987 22222112222222222221 011 2334556677778888999988
Q ss_pred ceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHH-HHHHhcCccceeeecccCCCCcCccc
Q 035933 240 RLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHA-TVIKETKEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (405)
...+.|+.+....+ .....+.+. +..++...++.... ..+..... ..+.-........+..+
T Consensus 216 ~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~-~~~~pl~~~~a~~~~~~ 278 (387)
T COG0654 216 RSSVVWSLPPGPAE-------------DLQGLSDEE---FLRELQRRLGERDPLGRVTLVSS-RSAFPLSLRVAERYRRG 278 (387)
T ss_pred ceeEEEECChhhHH-------------HHhcCCHHH---HHHHHHHhcCcccccceEEEccc-cccccccchhhhheecC
Confidence 88888887766544 011122222 22333333333311 00111111 11111113334566679
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCC--CcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCCCC
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGP--ENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLPD 396 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~--~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~ 396 (405)
|++|+|||||.++|++|||+|+|++||..|+++|.+... .+ ..+|+.|+++|++++..++..|+.+.+.+....+..
T Consensus 279 Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~-~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~ 357 (387)
T COG0654 279 RVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD-AAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFA 357 (387)
T ss_pred cEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc-HHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHH
Confidence 999999999999999999999999999999999988742 22 899999999999999999999998888877655543
No 14
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=7.6e-42 Score=318.69 Aligned_cols=335 Identities=16% Similarity=0.171 Sum_probs=222.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC-CCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT-GNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
+||+||||||+|+++|+.|++.|++|+|+|+.+.... ....++++.++++++++|+++|+.+ .+.....+... ...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~-~l~~~~~~~~~--~~~ 78 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWE-ELEKFVAEMQD--IYV 78 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHH-HHHhhcCCCcE--EEE
Confidence 6999999999999999999999999999999854321 1124679999999999999999854 34443333322 222
Q ss_pred ecCccc-eeeeecccCCcccccccHHHHHHHHHhcCCC--ce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeee
Q 035933 87 VDREKN-ICRVLARDENFNYLQAHWTDLHGLIYNTLPV--EI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGD 162 (405)
Q Consensus 87 ~~~~~~-~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d 162 (405)
++.... .............+.++|.+|++.|.+.+.. ++ +++++++.++..++ ..++++ ++++ + +++|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~---~~~~-~--~~ad 150 (374)
T PRK06617 79 VDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIK---FDDK-Q--IKCN 150 (374)
T ss_pred EECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEE---EcCC-E--EeeC
Confidence 222211 1111111112234779999999999998853 46 88999999998543 456666 4444 3 8999
Q ss_pred EEEeecCCcccccccccCCC-CCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcc-
Q 035933 163 LLVAADGSRSSVRQTFLPDS-KLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKR- 240 (405)
Q Consensus 163 ~vV~AdG~~S~vr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~- 240 (405)
+||+|||.+|.+|+.++.+. ...| ..++...++.+. ++ ....+..+.+.+.++++|++++.
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y--~~~~~~~v~~~~--------------~~-~~~~~~~~~~~g~~~~lPl~~~~~ 213 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPY--QTALTFNIKHEK--------------PH-ENCAMEHFLPLGPFALLPLKDQYA 213 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccC--CeEEEEEEeccC--------------CC-CCEEEEEecCCCCEEEeECCCCCe
Confidence 99999999999999886543 2334 233333333221 11 11223344455568888998875
Q ss_pred eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccccE
Q 035933 241 LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDNV 320 (405)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 320 (405)
..++|..+.+... .....+.+.+.++++. .+.+.+.++ ........+.+... +.++|+.+|+
T Consensus 214 ~~~vw~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~~i-~~~~~~~~~~l~~~-~~~~~~~grv 275 (374)
T PRK06617 214 SSVIWSTSSDQAA-------------LIVNLPVEEVRFLTQR---NAGNSLGKI-TIDSEISSFPLKAR-IANRYFHNRI 275 (374)
T ss_pred EEEEEeCCHHHHH-------------HHHcCCHHHHHHHHHH---hhchhcCce-eeccceeEEEeeee-eccceecCCE
Confidence 5777766533211 0011122222222222 122222221 11112233344433 5678888999
Q ss_pred EEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 321 VLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 321 ~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
+|||||||.++|+.|||+|+||+||..|+++|.. ..+|+.|+++|++++..++..+..+.+++.....
T Consensus 276 ~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~ 343 (374)
T PRK06617 276 VLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSK 343 (374)
T ss_pred EEEEcccccCCCCccccHHHHHHHHHHHHHHHcC------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999999999999999999999842 2589999999999999999999999999885443
No 15
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=8.9e-42 Score=322.04 Aligned_cols=348 Identities=15% Similarity=0.130 Sum_probs=226.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC-CCCCC-CCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT-RGPPT-GNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~-~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
|..+||+||||||+|+++|+.|++.|++|+|+|+. +.+.. ..+..++..++++++++|+++|+.+........+..
T Consensus 2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~-- 79 (405)
T PRK08850 2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYI-- 79 (405)
T ss_pred CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCccc--
Confidence 45689999999999999999999999999999997 32210 112345788999999999999985533332333332
Q ss_pred ccceecCccceeeeecc-cCCc--ccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 83 QNRAVDREKNICRVLAR-DENF--NYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
....++........+.. .... ..+.+++..|.+.|.+.+. .++ ++++++|++++.++ ..+.|+ +++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~~~v~---~~~g~~ 154 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGE--SEAWLT---LDNGQA 154 (405)
T ss_pred EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeC--CeEEEE---ECCCCE
Confidence 23333332111111111 1111 1345788899999998774 367 99999999998543 456666 557765
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEe
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYEL 236 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 236 (405)
+++|+||+|||.+|.+|+.++........+...+.+.+..+. ++ ....+..+.+++.+.++|+
T Consensus 155 --~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~-~~~~~~~~~~~g~~~~lp~ 217 (405)
T PRK08850 155 --LTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD--------------PH-NSVARQIFTPQGPLAFLPM 217 (405)
T ss_pred --EEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC--------------CC-CCEEEEEEcCCCceEEEEC
Confidence 899999999999999999986544333334445555543321 11 1233455677777888898
Q ss_pred eCcc-eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcC
Q 035933 237 MYKR-LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQI 315 (405)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (405)
.++. .+++|..+....+ .....+.+ ++.+.+...+...+..+ ........+.+. ....++|
T Consensus 218 ~~~~~~~~~w~~~~~~~~-------------~~~~~~~~---~~~~~l~~~~~~~~~~~-~~~~~~~~~pl~-~~~~~~~ 279 (405)
T PRK08850 218 SEPNMSSIVWSTEPLRAE-------------ALLAMSDE---QFNKALTAEFDNRLGLC-EVVGERQAFPLK-MRYARDF 279 (405)
T ss_pred CCCCeEEEEEECCHHHHH-------------HHHcCCHH---HHHHHHHHHHhhhhCcE-EEcccccEEecc-eeecccc
Confidence 7654 4666766543222 00011111 22222222222211110 111111112222 2334677
Q ss_pred ccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcC
Q 035933 316 YWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLG 391 (405)
Q Consensus 316 ~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~ 391 (405)
..+|++|+|||||.++|+.|||+|+||+||..|+++|.... +.....+|+.|+++|++++..++..++.+.++++.
T Consensus 280 ~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~ 359 (405)
T PRK08850 280 VRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSG 359 (405)
T ss_pred ccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999999999999999999999999997542 12357899999999999999999999999999875
Q ss_pred CCC
Q 035933 392 LPL 394 (405)
Q Consensus 392 ~~~ 394 (405)
.++
T Consensus 360 ~~~ 362 (405)
T PRK08850 360 SNP 362 (405)
T ss_pred Cch
Confidence 443
No 16
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=1.1e-41 Score=300.10 Aligned_cols=351 Identities=27% Similarity=0.334 Sum_probs=238.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
+.+|+|||||++|+++|+.|+|+|++|+|+|++..++. .|.++.+..+++++|+.+++ .+.+...+.|........
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~---~g~si~L~~ng~~aLkai~~-~e~i~~~gip~~~~v~~~ 77 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG---EGTSINLALNGWRALKAIGL-KEQIREQGIPLGGRVLIH 77 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc---CCcceeehhhHHHHHHHccc-HHHHHHhcCcccceeeee
Confidence 46999999999999999999999999999999888865 37788888889999999996 557777777765442222
Q ss_pred ecCccceeeeecccCCcc-cccccHHHHHHHHHhcCCCceEEecc------eEEEEEEecCCCeEEEEEeecCCCceeEE
Q 035933 87 VDREKNICRVLARDENFN-YLQAHWTDLHGLIYNTLPVEIVFWGH------LYLTFCISHDKSTVNVKAKNLRTDVIIDV 159 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~~~~~i~~~~------~v~~i~~~~~~~~v~v~~~~~~~g~~~~~ 159 (405)
.....+.........+.. .....|..+...|.++++.+.++|+. +...++ .-+....++ +.+|.. +
T Consensus 78 ~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~--~~~~~~~v~---l~~g~~--~ 150 (420)
T KOG2614|consen 78 GDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIE--TLGKKLVVH---LSDGTT--V 150 (420)
T ss_pred cCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceee--eccccccee---cCCCcE--E
Confidence 222232333333333322 33455667777777777766677775 222222 222233344 667776 9
Q ss_pred eeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc
Q 035933 160 VGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK 239 (405)
Q Consensus 160 ~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 239 (405)
++|++|+|||++|.||+.++... +.|.++++|++..-++..... ....+...+...+.+..+..+..+|...+.
T Consensus 151 ~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~~~~~~~~~-----~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k 224 (420)
T KOG2614|consen 151 KGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLGFIPNGIPF-----GKKVFAIYGNGLHSWPRPGFHLIAYWFLDK 224 (420)
T ss_pred EeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeeeeccCCCCc-----ccceecccCCeEEEcccCCceEEEEEeecC
Confidence 99999999999999999997544 889999999998865544322 233344455566666666555555555555
Q ss_pred ceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccc-eee-ecccCCCC----
Q 035933 240 RLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPF-LNL-IADCDPLT---- 313 (405)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~---- 313 (405)
..++.++.+.++ ++.+.....+..+.|+..+.+++....... ... +....|.+
T Consensus 225 ~~t~t~~~~~~e---------------------~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~ 283 (420)
T KOG2614|consen 225 SLTSTDFAPFDE---------------------PEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISV 283 (420)
T ss_pred CcccccccCcCC---------------------HHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeee
Confidence 555555544443 334555556666778888888777665432 211 33333432
Q ss_pred cCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCC--------Cc--------HHHHHHHHHhhcccchHH
Q 035933 314 QIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGP--------EN--------LHSALEEHKSVRLPVTNK 377 (405)
Q Consensus 314 ~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~--------~~--------~~~~l~~y~~~r~~~~~~ 377 (405)
+...++++|+|||||+|.|+.|||+|+||||+.+|+++|.++.+ .. ++.+...|..+|+.+.-+
T Consensus 284 ~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~r~~r 363 (420)
T KOG2614|consen 284 KCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWRRLLR 363 (420)
T ss_pred ccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHHHHhh
Confidence 11226899999999999999999999999999999999998852 12 567788888888666666
Q ss_pred HHHHHHHhhhhhcCCCCC
Q 035933 378 QVLHSRRVGLIKLGLPLP 395 (405)
Q Consensus 378 ~~~~s~~~~~~~~~~~~~ 395 (405)
..-.+...+.+.+...+.
T Consensus 364 l~~~~~l~gi~~~s~~~l 381 (420)
T KOG2614|consen 364 LKVDAYLVGILPQSFGPL 381 (420)
T ss_pred hhhhheeeEeccccccch
Confidence 655555555555444433
No 17
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=7.1e-42 Score=318.55 Aligned_cols=340 Identities=23% Similarity=0.234 Sum_probs=213.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||||+++|+.|+++|++|+||||++.+.. .++++.++++++++|+++|+.. .+.....+........+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~---~~~~~~l~~~~~~~l~~lgl~~-~~~~~~~~~~~~~~~~~ 77 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRP---KGRGIGLSPNSLRILQRLGLLD-EILARGSPHEVMRIFFY 77 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCC---SSSSEEEEHHHHHHHHHTTEHH-HHHHHSEEECEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccc---cccccccccccccccccccchh-hhhhhcccccceeeEee
Confidence 6999999999999999999999999999999998754 4578999999999999998854 44443322221111222
Q ss_pred cC---c------cceeeeec-ccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCc
Q 035933 88 DR---E------KNICRVLA-RDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDV 155 (405)
Q Consensus 88 ~~---~------~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~ 155 (405)
.. . ........ .........+.|..|++.|.+.+. .++ +.+++++.+++.+.+ .+++.+....+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~g~ 155 (356)
T PF01494_consen 78 DGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGEDGE 155 (356)
T ss_dssp EETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCTCE
T ss_pred cccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccCCc
Confidence 11 0 00111111 122233467899999999999874 578 999999999985544 5555555555777
Q ss_pred eeEEeeeEEEeecCCcccccccccCCCCCCcCc-eEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEE
Q 035933 156 IIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTG-YCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLY 234 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (405)
..+++||+||+|||.+|.+|+.+.......... ...+..+...... .. ......++...+...++++
T Consensus 156 ~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~ 223 (356)
T PF01494_consen 156 EETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDL---------SD---PWEDHCFIYSPPSGGFAII 223 (356)
T ss_dssp EEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHS---------HT---TTSCEEEEEEETTEEEEEE
T ss_pred eeEEEEeeeecccCcccchhhhccccccCcccccccccccccccccc---------cc---ccccccccccccccceeEe
Confidence 777999999999999999999986442211111 1122222111110 00 0011233444555666788
Q ss_pred EeeC-cceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCC
Q 035933 235 ELMY-KRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLT 313 (405)
Q Consensus 235 p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (405)
|..+ +...+.+........ .........+++.+.+...+.+..... .......+.+. ..+..
T Consensus 224 p~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~ 286 (356)
T PF01494_consen 224 PLENGDRSRFVWFLPFDESK--------------EERPEEFSPEELFANLPEIFGPDLLET--EIDEISAWPIP-QRVAD 286 (356)
T ss_dssp EETTTTEEEEEEEEETTTTT--------------CCSTHCHHHHHHHHHHHHHHHTCHHHH--EEEEEEEEEEE-EEEES
T ss_pred eccCCccceEEEeeeccccc--------------ccccccccccccccccccccccccccc--ccccccccccc-ccccc
Confidence 9877 444555555544332 001111222333333322222221111 11111122222 33446
Q ss_pred cCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHH
Q 035933 314 QIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHS 382 (405)
Q Consensus 314 ~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s 382 (405)
+|..+||+|||||||.++|+.|||+|+||+||..|+++|.++. +...+++|+.|+++|++++.++++.+
T Consensus 287 ~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 287 RWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp SSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6777999999999999999999999999999999999998774 46788999999999999999987653
No 18
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=7.8e-41 Score=312.99 Aligned_cols=347 Identities=14% Similarity=0.088 Sum_probs=216.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
.+||+||||||+|+++|+.|+++|++|+||||.+.+......+.+. ++++++++|+++|+.+ .+...+.+... ...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~-l~~~~~~~L~~lGl~~-~l~~~~~~~~~--~~~ 77 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV-LEQGTVDLLREAGVDE-RMDREGLVHEG--TEI 77 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee-ECHHHHHHHHHCCChH-HHHhcCceecc--eEE
Confidence 4799999999999999999999999999999998632111223344 8899999999999854 44444443321 111
Q ss_pred ecCccceeeeecccCC-cccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 87 VDREKNICRVLARDEN-FNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
.++.......+..... .+.....+..+.+.|.+.+. .++ ++++++++.+... +...+.|++. .+|+..++++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~--~~g~~~~i~adl 154 (390)
T TIGR02360 78 AFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFE--RDGERHRLDCDF 154 (390)
T ss_pred eeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEE--ECCeEEEEEeCE
Confidence 2221111111111111 12223456778888888764 466 8889888777532 2234445531 267655689999
Q ss_pred EEeecCCcccccccccCCCCCCcCce--EEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcce
Q 035933 164 LVAADGSRSSVRQTFLPDSKLRYTGY--CAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRL 241 (405)
Q Consensus 164 vV~AdG~~S~vr~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (405)
||+|||.+|.+|+++.......+.++ ..|.++....... ... .++...+..+.++|...+..
T Consensus 155 vIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~~~~ 218 (390)
T TIGR02360 155 IAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV---------------SHE-LIYSNHERGFALCSMRSATR 218 (390)
T ss_pred EEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC---------------CCc-eEEEeCCCceEEEeccCCCc
Confidence 99999999999999855443334433 2455554321110 011 12223444555666654333
Q ss_pred -eEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCcccee-eecccCCCCcCcccc
Q 035933 242 -NWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLN-LIADCDPLTQIYWDN 319 (405)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 319 (405)
.|++..+..... . ....+. +.+.+...+.+.+.+.+......... ........++|..+|
T Consensus 219 ~~~~~~~~~~~~~--------------~-~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gr 280 (390)
T TIGR02360 219 SRYYVQVPLTDKV--------------E-DWSDDR---FWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVCEPMQYGR 280 (390)
T ss_pred ceEEEEcCCCCCh--------------h-hCChhH---HHHHHHHhcCchhhhhhccCCccceeeeeHHhhccccCccCC
Confidence 243333221111 0 111111 22233333344454443332211111 011122335567799
Q ss_pred EEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 320 v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
++|||||||.++|+.|||+|+||+||..|+++|......+..++|..|++.|++++..+++.|+.++++++..+.
T Consensus 281 vvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~~ 355 (390)
T TIGR02360 281 LFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFPD 355 (390)
T ss_pred EEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999876445688999999999999999999999999999997765
No 19
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.4e-40 Score=311.42 Aligned_cols=342 Identities=16% Similarity=0.168 Sum_probs=214.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC--CCCCC-cceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT--GNPTG-AGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~--~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
+.+||+||||||+|+++|+.|+++|++|+|||+.+.... ....+ +.+.++++++++|+++|+.+........+..
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~-- 79 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYK-- 79 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccc--
Confidence 358999999999999999999999999999998763211 11112 3468999999999999986533222222221
Q ss_pred ccceecCccceeeeeccc--CCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCcee
Q 035933 83 QNRAVDREKNICRVLARD--ENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVII 157 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~ 157 (405)
....++............ .....+.+.+..|...|.+++. .++ ++++++|++++.++ ..++++ +++|.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~--~~~~v~---~~~g~~- 153 (384)
T PRK08849 80 RLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSA--EGNRVT---LESGAE- 153 (384)
T ss_pred eEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcC--CeEEEE---ECCCCE-
Confidence 111111111011111111 1111244666689989988763 367 99999999998543 456666 557765
Q ss_pred EEeeeEEEeecCCcccccccccCCCC-CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEe
Q 035933 158 DVVGDLLVAADGSRSSVRQTFLPDSK-LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYEL 236 (405)
Q Consensus 158 ~~~~d~vV~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 236 (405)
+++|+||+|||.+|.+|+.++.... ..|..... ++..... .+.. ...+..+.+.+....+|+
T Consensus 154 -~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~---v~~~~~~------------~~~~-~~~~~~~~~~g~~~~~pl 216 (384)
T PRK08849 154 -IEAKWVIGADGANSQVRQLAGIGITAWDYRQHCM---LINVETE------------QPQQ-DITWQQFTPSGPRSFLPL 216 (384)
T ss_pred -EEeeEEEEecCCCchhHHhcCCCceeccCCCeEE---EEEEEcC------------CCCC-CEEEEEeCCCCCEEEeEc
Confidence 8999999999999999998854322 22332211 1111110 0111 112333333334445788
Q ss_pred eCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCc
Q 035933 237 MYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIY 316 (405)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (405)
+++...+.|+....... .. ...+++ .+.+++...|.+.+.++ .......+.+ ...+.++|.
T Consensus 217 ~~~~~~~~~~~~~~~~~------------~~-~~~~~~---~~~~~l~~~~~~~~~~~--~~~~~~~~~l-~~~~~~~~~ 277 (384)
T PRK08849 217 CGNQGSLVWYDSPKRIK------------QL-SAMNPE---QLRSEILRHFPAELGEI--KVLQHGSFPL-TRRHAQQYV 277 (384)
T ss_pred CCCceEEEEECCHHHHH------------HH-HcCCHH---HHHHHHHHHhhhhhCcE--EeccceEeec-cccccchhc
Confidence 77766677765432111 00 011222 22233333333332221 0111111122 234567888
Q ss_pred cccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCC
Q 035933 317 WDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGL 392 (405)
Q Consensus 317 ~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~ 392 (405)
.+|++|||||||.++|+.|||+|+||+||..|+++|.... ....++|+.|+++|+++...++..++.+.++++..
T Consensus 278 ~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~-~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~ 352 (384)
T PRK08849 278 KNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQG-VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNS 352 (384)
T ss_pred cCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999999997543 45788999999999999999999999999988764
No 20
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-41 Score=316.05 Aligned_cols=344 Identities=15% Similarity=0.129 Sum_probs=223.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC--CCCCCcceeeCccHHHHHHHhccChhhhhccc-CCccccc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT--GNPTGAGIALHLLSQKIVKSWLHQPDLLHNIT-LPLTIDQ 83 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~ 83 (405)
++||+||||||||+++|+.|+++|++|+|+||.+.++. ....|+++.++++++++|+++|+.. .+.... .+.. .
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~-~~~~~~~~~~~--~ 79 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWD-RIPEDEISPLR--D 79 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChh-hhccccCCccc--e
Confidence 68999999999999999999999999999999987532 1235678889999999999999844 333222 2211 1
Q ss_pred cceecCccceeeeecc---cCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCcee
Q 035933 84 NRAVDREKNICRVLAR---DENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVII 157 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~---~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~ 157 (405)
....++.......+.. ......+.++|..+.+.|.+.+. .++ ++++++|++++.+ +..++|+ +++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~--~~~~~v~---~~~g~~- 153 (392)
T PRK09126 80 AKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTD--DDGAQVT---LANGRR- 153 (392)
T ss_pred EEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEc--CCeEEEE---EcCCCE-
Confidence 1122222111111111 11112345788899999988763 477 9999999999753 3456666 456764
Q ss_pred EEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 158 DVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 158 ~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
+++|+||+|||.+|.+|+.++........+...+...+.... +. ....+.++.++.+++++|..
T Consensus 154 -~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~P~~ 217 (392)
T PRK09126 154 -LTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--------------PH-HHTAWEWFGYGQTLALLPLN 217 (392)
T ss_pred -EEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--------------CC-CCEEEEEecCCCCeEEeECC
Confidence 899999999999999999986443333333323322222110 00 12234456667788889998
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcc
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW 317 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (405)
++..++++..+.+... .. ...+.+.+ .+++...+...+..+ ........+.+. ..+.++|..
T Consensus 218 ~~~~~~~~~~~~~~~~------------~~-~~~~~~~~---~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 279 (392)
T PRK09126 218 GHLSSLVLTLPPDQIE------------AL-LALDPEAF---AAEVTARFKGRLGAM-RLVSSRHAYPLV-AVYAHRFVA 279 (392)
T ss_pred CCCEEEEEECCHHHHH------------HH-HcCCHHHH---HHHHHHHHhhhccCe-EEcCCCcEeech-HHHHHHHhh
Confidence 8877777654433211 00 01112222 122212122111111 011111222222 223456778
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
+|++|+|||||.++|+.|||+|+||+||..|+++|.... +....++|+.|+++|++++..++..++.+.+++...+
T Consensus 280 ~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 359 (392)
T PRK09126 280 KRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDR 359 (392)
T ss_pred cceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999997653 2235789999999999999999999999999887643
No 21
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.4e-40 Score=314.20 Aligned_cols=344 Identities=18% Similarity=0.152 Sum_probs=221.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC-----CCCCCcceeeCccHHHHHHHhccChhhhhcccCCccc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT-----GNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTI 81 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~-----~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (405)
.+||+||||||+|+++|+.|+++|++|+|||+.+.... .....++..++++++++|+++|+.+........+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~- 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS- 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce-
Confidence 47999999999999999999999999999999873100 001234678999999999999985432222222321
Q ss_pred cccceecCccceeeeec-ccC--CcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 82 DQNRAVDREKNICRVLA-RDE--NFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
....++........+. ... ....+.++|..+.+.|.+.+. .++ +++++++.+++.+ +..++|+ +.+|++
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~v~v~---~~~g~~ 154 (405)
T PRK05714 81 -EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRS--GDDWLLT---LADGRQ 154 (405)
T ss_pred -eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCeEEEE---ECCCCE
Confidence 2223333221111111 111 122356888899999988774 477 9999999999854 3456666 557764
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCC-CcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEE
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKL-RYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYE 235 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 235 (405)
+++|+||+|||.+|.+|+.++..... .|.....+. .+..+. +. ....+..+.+++.+.++|
T Consensus 155 --~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~-~~~~~~--------------~~-~~~~~~~~~~~g~~~~~P 216 (405)
T PRK05714 155 --LRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVT-SVRCSE--------------PH-RATAWQRFTDDGPLAFLP 216 (405)
T ss_pred --EEeCEEEEecCCCchhHHhcCCCcccccCCceEEEE-EEEcCC--------------CC-CCEEEEEcCCCCCeEEee
Confidence 89999999999999999998643322 222221111 111110 11 122233456667888899
Q ss_pred eeCcc----eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCC
Q 035933 236 LMYKR----LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDP 311 (405)
Q Consensus 236 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (405)
++.+. .++.|..+..... .....+. +.+.+++.+.|...+.+++... ....+.+.. .+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~-~~ 278 (405)
T PRK05714 217 LERDGDEHWCSIVWSTTPEEAE-------------RLMALDD---DAFCAALERAFEGRLGEVLSAD-PRLCVPLRQ-RH 278 (405)
T ss_pred CCCCCCCCeEEEEEECCHHHHH-------------HHHCCCH---HHHHHHHHHHHHHHhCCceecC-CccEEecce-ee
Confidence 86442 2334443332211 0001111 2223333333333333333222 223344443 35
Q ss_pred CCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--CC--cHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 035933 312 LTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--PE--NLHSALEEHKSVRLPVTNKQVLHSRRVGL 387 (405)
Q Consensus 312 ~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--~~--~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 387 (405)
.++|..+|++|||||||.++|+.|||+|+||+||..|+++|.... +. ....+|+.|+++|++++..++..++.+.+
T Consensus 279 ~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~ 358 (405)
T PRK05714 279 AKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFER 358 (405)
T ss_pred hhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999999999997642 11 24689999999999999999999999999
Q ss_pred hhcCCC
Q 035933 388 IKLGLP 393 (405)
Q Consensus 388 ~~~~~~ 393 (405)
+++..+
T Consensus 359 ~~~~~~ 364 (405)
T PRK05714 359 LFQADP 364 (405)
T ss_pred HHCCCc
Confidence 988654
No 22
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=4.2e-40 Score=312.67 Aligned_cols=349 Identities=17% Similarity=0.178 Sum_probs=226.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHH----cCCcEEEEccCCCCCCCC---------CCCcceeeCccHHHHHHHhccChhhhhc
Q 035933 8 PKAIIVGGSIAGISCAKALIL----AGWDVVVIEKTRGPPTGN---------PTGAGIALHLLSQKIVKSWLHQPDLLHN 74 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~----~g~~v~i~E~~~~~~~~~---------~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 74 (405)
+||+||||||+|+++|+.|++ +|++|+||||++.+.... ..++++.++++++++|+++|+.+.....
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 899999999965443210 1356899999999999999985533222
Q ss_pred ccCCccccccceecCccceeeeecccC--CcccccccHHHHHHHHHhcCC-C---ce-EEecceEEEEEEe-----cCCC
Q 035933 75 ITLPLTIDQNRAVDREKNICRVLARDE--NFNYLQAHWTDLHGLIYNTLP-V---EI-VFWGHLYLTFCIS-----HDKS 142 (405)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~~l~~~L~~~~~-~---~~-i~~~~~v~~i~~~-----~~~~ 142 (405)
...+.. ....+++.......+.... ....+.++|..|.+.|.+.+. . ++ ++++++|.+++.+ ++..
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~ 158 (437)
T TIGR01989 81 RIQPFG--RMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSN 158 (437)
T ss_pred cCCcee--eEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCC
Confidence 222222 2233333221111111111 122456899999999988774 2 47 9999999999753 2345
Q ss_pred eEEEEEeecCCCceeEEeeeEEEeecCCcccccccccCCCC-CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCce
Q 035933 143 TVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTFLPDSK-LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGV 221 (405)
Q Consensus 143 ~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (405)
.++|+ +.+|++ ++||+||+|||.+|.+|+.++.... ..|.....+ +.+..+.. ++ ....
T Consensus 159 ~v~v~---~~~g~~--i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v-~~v~~~~~-------------~~-~~~~ 218 (437)
T TIGR01989 159 WVHIT---LSDGQV--LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVV-ATLKLEEA-------------TE-NDVA 218 (437)
T ss_pred ceEEE---EcCCCE--EEeeEEEEecCCCChhHHHcCCCccceeeccEEEE-EEEEcccC-------------CC-CCeE
Confidence 67776 567765 9999999999999999999864432 233333222 22222110 11 1233
Q ss_pred eEeecCCeEEEEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHH----hhc----------
Q 035933 222 HTDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVE----KIC---------- 287 (405)
Q Consensus 222 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---------- 287 (405)
+..+.+++.+.++|++++..+|+|..+..... .....+++.+.+.+++.. ..+
T Consensus 219 ~~~f~~~g~~~~lPl~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~ 285 (437)
T TIGR01989 219 WQRFLPTGPIALLPLPDNNSTLVWSTSPEEAL-------------RLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAM 285 (437)
T ss_pred EEEECCCCCEEEeECCCCCEEEEEeCCHHHHH-------------HHHcCCHHHHHHHHHHHhccccccccccccccccc
Confidence 44456677788899998888888877543322 000112222222221111 000
Q ss_pred --------------------ChHHHHHHHhcCccceeeecccCCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHH
Q 035933 288 --------------------APEHATVIKETKEPFLNLIADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAV 347 (405)
Q Consensus 288 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~ 347 (405)
.+.+..+.. .....+.+ .....++|..+|++|+|||||.++|+.|||+|+||+||..
T Consensus 286 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~ 362 (437)
T TIGR01989 286 EKLNEDIGFRTEGSKSCFQVPPRVIGVVD--KSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVAS 362 (437)
T ss_pred ccccccccccccccccccccCchhheeec--ccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHH
Confidence 000000000 00011222 2344567788999999999999999999999999999999
Q ss_pred HHHHHHhhC--CC--cHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 348 LGKCLERWG--PE--NLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 348 la~~l~~~~--~~--~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
|+++|.+.. .. ....+|+.|+++|++++..++..++.+.+++....+
T Consensus 363 La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~ 413 (437)
T TIGR01989 363 LVKALAEAVSVGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFP 413 (437)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999998753 12 235799999999999999999999999999876443
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=3.2e-40 Score=313.23 Aligned_cols=345 Identities=19% Similarity=0.187 Sum_probs=217.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
.++||+||||||||+++|+.|+++|++|+||||++.++.. ..++++.++++++++|+++|+.+ .+.....+... ..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~g~~~~l~~~~~~~L~~lGl~~-~l~~~~~~~~~--~~ 92 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA-AKGQAYALSLLSARIFEGIGVWE-KILPQIGKFRQ--IR 92 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC-CCCcEEEechHHHHHHHHCChhh-hhHhhcCCccE--EE
Confidence 3589999999999999999999999999999999876432 24678999999999999999854 34433333221 11
Q ss_pred eecCccc-eeeeecc---cCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeE
Q 035933 86 AVDREKN-ICRVLAR---DENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIID 158 (405)
Q Consensus 86 ~~~~~~~-~~~~~~~---~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~ 158 (405)
.++.... ....... .....+...+| .+.+.|.+.+. .++ +++++++++++.++ ..++|++. .+++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~--~~~~~~~ 167 (415)
T PRK07364 93 LSDADYPGVVKFQPTDLGTEALGYVGEHQ-VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLE--IEGKQQT 167 (415)
T ss_pred EEeCCCCceeeeccccCCCCccEEEEecH-HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEc--cCCcceE
Confidence 2222110 1111111 11122233344 67888888764 367 89999999997543 45666632 1333335
Q ss_pred EeeeEEEeecCCcccccccccCCCC-CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 159 VVGDLLVAADGSRSSVRQTFLPDSK-LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 159 ~~~d~vV~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
++||+||+|||.+|.+|+.+..... ..+.. .++...+..+... ....+..+.+++.++++|++
T Consensus 168 i~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~p~~ 231 (415)
T PRK07364 168 LQSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SCVTATVKHEAPH---------------NDIAYERFWPSGPFAILPLP 231 (415)
T ss_pred EeeeEEEEeCCCCchhHHHhCCCceeecCCC-EEEEEEEEccCCC---------------CCEEEEEecCCCCeEEeECC
Confidence 8999999999999999998854322 11211 2222233222110 01111122244567788998
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcc
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW 317 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (405)
++..+++|..+.+... .. ...+.+ ++.+.+.+.+.+.+.++. .......+.+. ..+.++|..
T Consensus 232 ~~~~~~~~~~~~~~~~------------~~-~~~~~~---~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 293 (415)
T PRK07364 232 GNRCQIVWTAPHAQAK------------AL-LALPEA---EFLAELQQRYGDQLGKLE-LLGDRFLFPVQ-LMQSDRYVQ 293 (415)
T ss_pred CCCEEEEEECCHHHHH------------HH-HCCCHH---HHHHHHHHHhhhhhcCce-ecCCCceecch-hhhhhhhcC
Confidence 8887777765432111 00 011111 222222222222221111 11122223332 223567788
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--CCc--HHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--PEN--LHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--~~~--~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
+|++|||||||.++|+.|||+|+||+||..|+++|.+.. +.+ ..++|+.|++.|++++...+..++.+.+++...+
T Consensus 294 ~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~ 373 (415)
T PRK07364 294 HRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQW 373 (415)
T ss_pred CcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999997652 122 3489999999999999999999999998887543
No 24
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=7.8e-40 Score=307.30 Aligned_cols=349 Identities=14% Similarity=0.087 Sum_probs=211.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
++||+||||||+|+++|+.|++.|++|+|+||.+.+...... ++..++++++++|+++|+.+ .+...+.+.....+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~a~~l~~~~~~~l~~lGl~~-~l~~~~~~~~~~~~~- 78 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRI-RAGVLEQGTVDLLREAGVGE-RMDREGLVHDGIELR- 78 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccccc-ceeEECHhHHHHHHHcCChH-HHHhcCCccCcEEEE-
Confidence 479999999999999999999999999999999864211112 23458999999999999854 444444433221111
Q ss_pred ecCccceeeeecccC-CcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 87 VDREKNICRVLARDE-NFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
.++.. ....+.... +.....++|..+.+.|.+.+ ..++ +++++++++++. .++..+.|++ ..+|+..++++|+
T Consensus 79 ~~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~-~~~~~~~V~~--~~~G~~~~i~ad~ 154 (392)
T PRK08243 79 FDGRR-HRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHD-FDSDRPYVTY--EKDGEEHRLDCDF 154 (392)
T ss_pred ECCEE-EEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEe-cCCCceEEEE--EcCCeEEEEEeCE
Confidence 12211 111111111 22233456777777777655 4577 999999999874 1334455553 1367656799999
Q ss_pred EEeecCCcccccccccCCCCCCcCce--EEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcce
Q 035933 164 LVAADGSRSSVRQTFLPDSKLRYTGY--CAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRL 241 (405)
Q Consensus 164 vV~AdG~~S~vr~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 241 (405)
||+|||.+|.+|+++.......+... ..|.+...... +. ....++...+....++.+.+.+..
T Consensus 155 vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (392)
T PRK08243 155 IAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAP--------------PV-SDELIYANHERGFALCSMRSPTRS 219 (392)
T ss_pred EEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCC--------------CC-CCceEEeeCCCceEEEecCCCCcE
Confidence 99999999999999864333223221 23333321100 00 011122223334444443344434
Q ss_pred eEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCcc-ceeeecccCCCCcCccccE
Q 035933 242 NWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEP-FLNLIADCDPLTQIYWDNV 320 (405)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v 320 (405)
.+++.+...... ..+ ......+.+. ..+.......+...... ...........++|..+|+
T Consensus 220 ~~~~~~~~~~~~-----------~~~---~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv 281 (392)
T PRK08243 220 RYYLQCPLDDKV-----------EDW---SDERFWDELR----RRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRL 281 (392)
T ss_pred EEEEEecCCCCc-----------ccC---ChhHHHHHHH----HhcCcccccccccCccccccceeeeeceeccceeCCE
Confidence 444433321111 000 1122222222 22221111100001000 0000111223345667999
Q ss_pred EEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCCC
Q 035933 321 VLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLP 395 (405)
Q Consensus 321 ~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~~ 395 (405)
+|||||||.++|++|||+|+||+||..|+++|.+....+..++|+.|++.|++++..++..|+.+.++++..+..
T Consensus 282 vLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~~~~ 356 (392)
T PRK08243 282 FLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRRVWKAERFSWWMTSMLHRFPDD 356 (392)
T ss_pred EEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999998764345689999999999999999999999999998876543
No 25
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=5.3e-40 Score=319.77 Aligned_cols=345 Identities=18% Similarity=0.134 Sum_probs=225.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
++.+||+||||||+|+++|+.|+++|++|+||||.+.+.. .++++.++++++++|+++|+.+ .+...+.+.....+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~---~~ra~~l~~~~~~~L~~lGl~~-~l~~~~~~~~~~~~ 83 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD---LPRAVGIDDEALRVLQAIGLAD-EVLPHTTPNHGMRF 83 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---CCceeeeCHHHHHHHHHcCChh-HHHhhcccCCceEE
Confidence 3468999999999999999999999999999999987643 5678999999999999999854 33333333221111
Q ss_pred ceecCccceeeee-c--ccCCcc-cccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCcee
Q 035933 85 RAVDREKNICRVL-A--RDENFN-YLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVII 157 (405)
Q Consensus 85 ~~~~~~~~~~~~~-~--~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~ 157 (405)
...++.. ..... . ...+++ ...+.|..+++.|.+.+. .++ ++++++|++++.++ ..+++++.+ .+|+..
T Consensus 84 ~~~~g~~-~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~--~~v~v~~~~-~~G~~~ 159 (538)
T PRK06183 84 LDAKGRC-LAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDD--DGVTVTLTD-ADGQRE 159 (538)
T ss_pred EcCCCCE-EEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcC--CeEEEEEEc-CCCCEE
Confidence 1112221 11111 1 111222 256788999999999774 377 99999999998544 456666432 256555
Q ss_pred EEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 158 DVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 158 ~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
++++|+||+|||.+|.+|+.+...... ..+...+.+++..... .+......++.+.++..+.++|.+
T Consensus 160 ~i~ad~vVgADG~~S~vR~~lg~~~~~--~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~p~~ 226 (538)
T PRK06183 160 TVRARYVVGCDGANSFVRRTLGVPFED--LTFPERWLVVDVLIAN-----------DPLGGPHTYQYCDPARPYTSVRLP 226 (538)
T ss_pred EEEEEEEEecCCCchhHHHHcCCeeeC--CCccceEEEEEEeccc-----------CccCCCceEEEECCCCCEEEEEcC
Confidence 799999999999999999998532211 1111111122211000 001112234556777788888988
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcC--hHHHHHHHhcCccceeeecccCCCCcC
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICA--PEHATVIKETKEPFLNLIADCDPLTQI 315 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (405)
++...|.+........ ......+.+.+++ ..|. +...++.. ...........++|
T Consensus 227 ~~~~r~~~~~~~~~~~--------------~~~~~~~~~~~~l----~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~ 283 (538)
T PRK06183 227 HGRRRWEFMLLPGETE--------------EQLASPENVWRLL----APWGPTPDDAELIR-----HAVYTFHARVADRW 283 (538)
T ss_pred CCeEEEEEEeCCCCCh--------------hhcCCHHHHHHHH----HhhCCCCcceEEEE-----EEeeeEccEEhhhh
Confidence 7766665544322111 0011222333322 2221 11111100 01111112334678
Q ss_pred ccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 316 YWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 316 ~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
..+||+|+|||||.++|+.|||+|+||+||..|+++|.... +....++|+.|+++|++++..++..+..+.+++...+
T Consensus 284 ~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~ 362 (538)
T PRK06183 284 RSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPTD 362 (538)
T ss_pred ccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Confidence 88999999999999999999999999999999999997652 3456889999999999999999999999999886543
No 26
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=4.2e-40 Score=309.10 Aligned_cols=342 Identities=18% Similarity=0.169 Sum_probs=225.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCCCCCCC-CCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 9 KAIIVGGSIAGISCAKALILAG-WDVVVIEKTRGPPTGN-PTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
||+||||||||+++|+.|+++| ++|+|+||.+.++... ..++++.++++++++|+++|+.. .+...+.+... ...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~-~~~~~~~~~~~--~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWP-KLAPFATPILD--IHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChh-hhHhhcCccce--EEE
Confidence 7999999999999999999999 9999999998875521 11457899999999999999854 44433333221 111
Q ss_pred ecCccceeeeec---ccCCcccccccHHHHHHHHHhcCCC--ce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEe
Q 035933 87 VDREKNICRVLA---RDENFNYLQAHWTDLHGLIYNTLPV--EI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVV 160 (405)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~ 160 (405)
.+........+. .......+.++|..|.+.|.+.+.. ++ ++++++|++++.+ +..++++ +++|+. ++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~---~~~g~~--~~ 150 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDYVRVT---LDNGQQ--LR 150 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCeEEEE---ECCCCE--EE
Confidence 111110001111 1111223568999999999998853 78 9999999999854 3456666 456664 89
Q ss_pred eeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCc-
Q 035933 161 GDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYK- 239 (405)
Q Consensus 161 ~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~- 239 (405)
||+||+|||.+|.+|+.+.........+...+...+...... .......+.+++.+.++|..++
T Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~p~~~~~ 215 (382)
T TIGR01984 151 AKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPH---------------QGCAFERFTPHGPLALLPLKDNY 215 (382)
T ss_pred eeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCC---------------CCEEEEeeCCCCCeEECcCCCCC
Confidence 999999999999999998644333333344444444332111 0111222344556777888877
Q ss_pred ceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcccc
Q 035933 240 RLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDN 319 (405)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (405)
...++|..+.+... .. ...+. +++.+++.+.+.+.+.++. .......+.+. ....++|..+|
T Consensus 216 ~~~~~~~~~~~~~~------------~~-~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~r 277 (382)
T TIGR01984 216 RSSLVWCLPSKQAD------------TI-ANLPD---AEFLAELQQAFGWRLGKIT-QVGERKTYPLK-LRIAETHVHPR 277 (382)
T ss_pred CEEEEEECCHHHHH------------HH-HcCCH---HHHHHHHHHHHhhhccCeE-EcCCccEeecc-hhhhhheecCC
Confidence 56666654432211 00 00111 1222333333333322221 11122223333 23456677799
Q ss_pred EEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 320 VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 320 v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
|+|||||||.++|++|||+|+||+||..|+++|.... +...+++|+.|+++|+++....+..++.+.+++....
T Consensus 278 v~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~ 352 (382)
T TIGR01984 278 VVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHI 352 (382)
T ss_pred EEEEeecccccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999999998763 3345899999999999999999999999999887543
No 27
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1e-39 Score=307.08 Aligned_cols=350 Identities=17% Similarity=0.175 Sum_probs=222.7
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC--CCCcceeeCccHHHHHHHhccChhhhhcccCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN--PTGAGIALHLLSQKIVKSWLHQPDLLHNITLP 78 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 78 (405)
|+. +..+||+||||||+|+++|+.|+++|++|+||||.+.+.... ...+.+.+++.++++|+++|+.+........+
T Consensus 1 ~~~-~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (392)
T PRK08773 1 MSR-RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQP 79 (392)
T ss_pred CCC-CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCc
Confidence 443 356899999999999999999999999999999987654211 11235789999999999999865332222223
Q ss_pred ccccccceecCc--cceeeeec-ccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCC
Q 035933 79 LTIDQNRAVDRE--KNICRVLA-RDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRT 153 (405)
Q Consensus 79 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~ 153 (405)
.. ....++.. ........ .......+.++|..|.+.|.+.+. .++ ++++++|++++.+ +..++++ +++
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~v~v~---~~~ 152 (392)
T PRK08773 80 YR--RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQD--ADRVRLR---LDD 152 (392)
T ss_pred cc--EEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCeEEEE---ECC
Confidence 22 12222211 11110000 011112356889999999999875 477 9999999999853 3456665 456
Q ss_pred CceeEEeeeEEEeecCCcccccccccCCCC-CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEE
Q 035933 154 DVIIDVVGDLLVAADGSRSSVRQTFLPDSK-LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTV 232 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (405)
|++ +++|+||+|||.+|.+|+.+..... ..|.....+ ..+..+. +.. ...+..+.+++.+.
T Consensus 153 g~~--~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~-~~v~~~~--------------~~~-~~~~~~~~~~g~~~ 214 (392)
T PRK08773 153 GRR--LEAALAIAADGAASTLRELAGLPVSRHDYAQRGVV-AFVDTEH--------------PHQ-ATAWQRFLPTGPLA 214 (392)
T ss_pred CCE--EEeCEEEEecCCCchHHHhhcCCceEEEeccEEEE-EEEEccC--------------CCC-CEEEEEeCCCCcEE
Confidence 764 8999999999999999998753322 122222111 1111111 111 12233445666778
Q ss_pred EEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCC
Q 035933 233 LYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPL 312 (405)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (405)
++|.+++...++|..+....+ . ....+.+ .+.+++.+.+.+.+..+ ........+.+. ..+.
T Consensus 215 ~lP~~~~~~~~~w~~~~~~~~------------~-~~~~~~~---~~~~~l~~~~~~~~~~~-~~~~~~~~~~l~-~~~~ 276 (392)
T PRK08773 215 LLPFADGRSSIVWTLPDAEAE------------R-VLALDEA---AFSRELTQAFAARLGEV-RVASPRTAFPLR-RQLV 276 (392)
T ss_pred EEECCCCceEEEEECCHHHHH------------H-HHcCCHH---HHHHHHHHHHhhhhcCe-EecCCccEeech-hhhh
Confidence 889988888888876543222 0 0011111 22222222222222111 111111223333 3356
Q ss_pred CcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhh
Q 035933 313 TQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLI 388 (405)
Q Consensus 313 ~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~ 388 (405)
++|..+|++|+|||||.++|+.|||+|+||+||..|+++|.+.. +.....+|++|+++|+++..........+.++
T Consensus 277 ~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~ 356 (392)
T PRK08773 277 QQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRV 356 (392)
T ss_pred hhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999998652 22346899999999999988777777777777
Q ss_pred hcCCCC
Q 035933 389 KLGLPL 394 (405)
Q Consensus 389 ~~~~~~ 394 (405)
+....+
T Consensus 357 f~~~~~ 362 (392)
T PRK08773 357 FSNDEM 362 (392)
T ss_pred HcCCCh
Confidence 765443
No 28
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=3.5e-39 Score=308.79 Aligned_cols=347 Identities=14% Similarity=0.150 Sum_probs=223.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhccc-CCcccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNIT-LPLTIDQN 84 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~ 84 (405)
..+||+||||||+|+++|+.|+++|++|+|+||...... .+.++.+++++...|+++|+.+ .++... .+.. ..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~---~~~g~~L~p~g~~~L~~LGl~d-~l~~~~~~~~~--~~ 115 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE---RMMGEFMQPGGRFMLSKLGLED-CLEGIDAQKAT--GM 115 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCc---cccccccCchHHHHHHHcCCcc-hhhhccCcccc--cE
Confidence 458999999999999999999999999999999865322 3458889999999999999854 343322 2221 12
Q ss_pred cee-cCccceeeeecc-cCCc----ccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCc
Q 035933 85 RAV-DREKNICRVLAR-DENF----NYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDV 155 (405)
Q Consensus 85 ~~~-~~~~~~~~~~~~-~~~~----~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~ 155 (405)
..+ +++. ....+.. .... ....++|.+|.+.|.+++. .++ +..+ +++++..+ ++..+.|++. ..+|+
T Consensus 116 ~v~~~g~~-~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~-~~dG~ 191 (514)
T PLN02985 116 AVYKDGKE-AVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYK-NSAGE 191 (514)
T ss_pred EEEECCEE-EEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEE-cCCCC
Confidence 222 2221 1111111 1111 2256889999999999874 367 6655 56666532 2322234432 45676
Q ss_pred eeEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEE
Q 035933 156 IIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYE 235 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 235 (405)
..++.+|+||+|||.+|.+|+.+..........+..+ +...... +. ....+++++++..+.++|
T Consensus 192 ~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~---~~~~~~~------------~~-~~~~~~~~~~~~~~l~yp 255 (514)
T PLN02985 192 ETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGY---ISKNCRL------------EE-PEKLHLIMSKPSFTMLYQ 255 (514)
T ss_pred EEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEE---EEccccC------------CC-CCcceEEcCCCceEEEEE
Confidence 6667899999999999999999865333223322222 1111000 00 122345567778889999
Q ss_pred eeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHH-HHhhcChHHHHHHHhc--C-ccce-eeecccC
Q 035933 236 LMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQE-VEKICAPEHATVIKET--K-EPFL-NLIADCD 310 (405)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~ 310 (405)
+++++..+.+..+.+..+ ......++.+... ..+.+++.+.+..... . ..+. .... ..
T Consensus 256 i~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~-~l 318 (514)
T PLN02985 256 ISSTDVRCVFEVLPDNIP----------------SIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTK-RM 318 (514)
T ss_pred eCCCeEEEEEEEeCCCCC----------------CcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcc-cc
Confidence 988887777766654322 1111222333222 2233344555443221 1 1111 1111 22
Q ss_pred CCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhh
Q 035933 311 PLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVG 386 (405)
Q Consensus 311 ~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 386 (405)
|...+..+|++|||||||+++|++|||+|+|++||..|+++|.+.. .....++|+.|+++|++++..++..|+.++
T Consensus 319 ~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~ 398 (514)
T PLN02985 319 SATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFS 398 (514)
T ss_pred cccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 3334445899999999999999999999999999999999997642 235678999999999999999999999999
Q ss_pred hhhcCCCCC
Q 035933 387 LIKLGLPLP 395 (405)
Q Consensus 387 ~~~~~~~~~ 395 (405)
+++...+++
T Consensus 399 ~~f~a~~~~ 407 (514)
T PLN02985 399 QVLVASTDE 407 (514)
T ss_pred HHHHhCCHH
Confidence 999754444
No 29
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=4.5e-39 Score=315.57 Aligned_cols=356 Identities=15% Similarity=0.165 Sum_probs=223.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILA-GWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQ 83 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~-g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (405)
.+++||+||||||+||++|+.|++. |++|+||||++.+. ..|++..++++++++|+++|+.+. +...+.+...
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~---~~grA~gl~prtleiL~~lGl~d~-l~~~g~~~~~-- 103 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL---ELGQADGIACRTMEMFQAFGFAER-ILKEAYWINE-- 103 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC---CCCeeeEEChHHHHHHHhccchHH-HHhhcccccc--
Confidence 3578999999999999999999995 99999999998753 367889999999999999998654 4443333221
Q ss_pred cceecCcc----cee---eee---cccCCcccccccHHHHHHHHHhcCC-C--ce-EEecceEEEEEEecC-CCeEEEEE
Q 035933 84 NRAVDREK----NIC---RVL---ARDENFNYLQAHWTDLHGLIYNTLP-V--EI-VFWGHLYLTFCISHD-KSTVNVKA 148 (405)
Q Consensus 84 ~~~~~~~~----~~~---~~~---~~~~~~~~~~~~r~~l~~~L~~~~~-~--~~-i~~~~~v~~i~~~~~-~~~v~v~~ 148 (405)
...++... .+. ... .....++...++|..+++.|.+.+. . .+ +.+++++++++.+++ ...|++++
T Consensus 104 ~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l 183 (634)
T PRK08294 104 TAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTL 183 (634)
T ss_pred eEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEE
Confidence 12222110 010 000 0112345567899999999999874 2 35 789999999986543 34577776
Q ss_pred eecC---CCceeEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEee
Q 035933 149 KNLR---TDVIIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDL 225 (405)
Q Consensus 149 ~~~~---~g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (405)
++.+ +|+..+++||+||+|||.+|.||+.++......... ..+++++.... ..+|.......+..
T Consensus 184 ~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~--~~~~v~dv~~~----------~~~p~~~~~~~~~~ 251 (634)
T PRK08294 184 RRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSAN--HAWGVMDVLAV----------TDFPDIRLKCAIQS 251 (634)
T ss_pred EECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCccc--ceEEEEEEEEc----------cCCCCcceEEEEec
Confidence 5431 454456999999999999999999985432221111 12233222110 01222112222333
Q ss_pred cCCeEEEEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceee
Q 035933 226 VPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNL 305 (405)
Q Consensus 226 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (405)
.+++.+.++|..++.... +++.....+ ..........+.+.+. +.+.+.+.+...++ . ...-+.
T Consensus 252 ~~~g~~~~~P~~~g~~~r-~~~~~~~~~--------~~~~~~~~~~t~e~l~---~~~~~~~~p~~~~~-~---~v~w~s 315 (634)
T PRK08294 252 ASEGSILLIPREGGYLVR-LYVDLGEVP--------PDERVAVRNTTVEEVI---AKAQRILHPYTLDV-K---EVAWWS 315 (634)
T ss_pred CCCceEEEEECCCCeEEE-EEEecCcCC--------CccccccccCCHHHHH---HHHHHhcCCCCCce-e---EEeEEe
Confidence 456788889988774222 222211111 0000111122333332 23222222211110 0 001111
Q ss_pred ecc--cCCCCcC----------ccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcc
Q 035933 306 IAD--CDPLTQI----------YWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRL 372 (405)
Q Consensus 306 ~~~--~~~~~~~----------~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~ 372 (405)
++. .+..+++ ..+||+|+|||||.++|.+|||+|+||+||..|++.|.... +....++|+.|+++|+
T Consensus 316 ~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERr 395 (634)
T PRK08294 316 VYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQ 395 (634)
T ss_pred cccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 111 1111121 35899999999999999999999999999999999998753 3467899999999999
Q ss_pred cchHHHHHHHHHhhhhhcCCCC
Q 035933 373 PVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 373 ~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
+++..+++.++..++++...+.
T Consensus 396 p~a~~li~~~~~~~~l~~~~~~ 417 (634)
T PRK08294 396 AIAQELIDFDREWSTMMAAPPK 417 (634)
T ss_pred HHHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999987554
No 30
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=1.4e-39 Score=305.91 Aligned_cols=343 Identities=18% Similarity=0.115 Sum_probs=222.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
|+.+||+||||||+|+++|+.|+++|++|+||||.+.+. ..++..+++++.++|+++|+.. .+.....+... .
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~----~~r~~~l~~~s~~~l~~lgl~~-~~~~~~~~~~~--~ 77 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA----DLRTTALLGPSIRFLERLGLWA-RLAPHAAPLQS--M 77 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC----CcchhhCcHHHHHHHHHhCchh-hhHhhcceeeE--E
Confidence 567899999999999999999999999999999987652 2346678888999999998754 33333333221 2
Q ss_pred ceec--Ccccee--eeecc---cCCcccccccHHHHHHHHHhcCCC--ceEEecceEEEEEEecCCCeEEEEEeecCCCc
Q 035933 85 RAVD--REKNIC--RVLAR---DENFNYLQAHWTDLHGLIYNTLPV--EIVFWGHLYLTFCISHDKSTVNVKAKNLRTDV 155 (405)
Q Consensus 85 ~~~~--~~~~~~--~~~~~---~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~ 155 (405)
..++ +..... ..+.. ......+.++|..+.+.|.+.+.. ++.+++++|.+++.+ +..++++ +++|+
T Consensus 78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~--~~~~~v~---~~~g~ 152 (388)
T PRK07494 78 RIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPR--EDEVTVT---LADGT 152 (388)
T ss_pred EEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEc--CCeEEEE---ECCCC
Confidence 2222 111000 01110 111223568999999999998743 347889999999753 3456666 55666
Q ss_pred eeEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEE
Q 035933 156 IIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYE 235 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 235 (405)
. +++|+||+|||.+|.+|+.+.........+...+...+..+. +.. ...+..+.+.+..+++|
T Consensus 153 ~--~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~--------------~~~-~~~~~~~~~~g~~~~~P 215 (388)
T PRK07494 153 T--LSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSR--------------PHQ-NVSTEFHTEGGPFTQVP 215 (388)
T ss_pred E--EEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccC--------------CCC-CEEEEEeCCCCcEEEEE
Confidence 4 899999999999999999986543333223333333222111 111 11223334556677889
Q ss_pred eeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcC
Q 035933 236 LMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQI 315 (405)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (405)
++++..+++|+...+.... ....+.+.+. +.+.+.+.+.+..+ ........+.+... ..+.|
T Consensus 216 l~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~~~~~~~l~~~-~~~~~ 277 (388)
T PRK07494 216 LPGRRSSLVWVVRPAEAER-------------LLALSDAALS---AAIEERMQSMLGKL-TLEPGRQAWPLSGQ-VAHRF 277 (388)
T ss_pred CCCCcEEEEEECCHHHHHH-------------HHcCCHHHHH---HHHHHHHhhhcCCe-EEccCCcEeechHH-HHHhh
Confidence 9888888888765543220 0011222222 22212111111111 11112223333322 23567
Q ss_pred ccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 316 YWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 316 ~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
..+|++|+|||||.++|++|||+|+||+||..|+++|.+.. +....++|+.|+++|++++...+..+..+.+++....+
T Consensus 278 ~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~ 357 (388)
T PRK07494 278 AAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFL 357 (388)
T ss_pred ccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 78999999999999999999999999999999999998753 23468899999999999999888888888887776443
No 31
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=314.63 Aligned_cols=350 Identities=16% Similarity=0.103 Sum_probs=221.7
Q ss_pred CCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccc
Q 035933 2 RERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTI 81 (405)
Q Consensus 2 ~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (405)
++.+..+||+||||||+|+++|+.|+++|++|+||||.+.+.. .++++.++++++++|+++|+.+ .+...+.+...
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~---~~ra~~l~~r~~e~L~~lGl~~-~l~~~g~~~~~ 77 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF---NPKANTTSARSMEHFRRLGIAD-EVRSAGLPVDY 77 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC---CCccccCCHHHHHHHHhcChHH-HHHhhcCCccc
Confidence 3334568999999999999999999999999999999986543 5678899999999999999854 44444443211
Q ss_pred --cc--cceecCccceeeeec--c--------------cCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEe
Q 035933 82 --DQ--NRAVDREKNICRVLA--R--------------DENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCIS 138 (405)
Q Consensus 82 --~~--~~~~~~~~~~~~~~~--~--------------~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~ 138 (405)
.. .....+.. +..... . ........++|..+++.|.+.+. .++ ++++++|++++.+
T Consensus 78 ~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~ 156 (545)
T PRK06126 78 PTDIAYFTRLTGYE-LARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD 156 (545)
T ss_pred cCCceEEecCCCce-eeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC
Confidence 00 00011111 111000 0 01112456899999999999874 467 9999999999854
Q ss_pred cCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccccccccCCCCC-CcCceEEEEEEecCCCCCCchhhhhhhhccCCC
Q 035933 139 HDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTFLPDSKL-RYTGYCAWRGVFDFSENENSETIQGIRKAYPEL 217 (405)
Q Consensus 139 ~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (405)
...+++.+.+..+|+..++++|+||+|||.+|.||+.++..... .+..+ .+...+..+... ...+..
T Consensus 157 --~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~-~~~~~~~~~~l~---------~~~~~~ 224 (545)
T PRK06126 157 --ADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQR-DLSIYIRAPGLA---------ALVGHD 224 (545)
T ss_pred --CCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcce-EEEEEEEcCchH---------HHhcCC
Confidence 34566666555667766799999999999999999998543221 11111 111222221110 001111
Q ss_pred CCceeEeecCCeEEEEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHh
Q 035933 218 GNGVHTDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKE 297 (405)
Q Consensus 218 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (405)
....+++..++...++++..... .|.+....+... ....+++.+.++..+ .+...+.. .
T Consensus 225 ~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~---~~~~~~~~---~ 283 (545)
T PRK06126 225 PAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGED--------------EFTIDDVDARAFVRR---GVGEDIDY---E 283 (545)
T ss_pred CceEEEEECCCccEEEEEECCCC-eEEEEEecCCCC--------------CCCCCHHHHHHHHHH---hcCCCCCe---E
Confidence 22334555666666666665433 333331111111 001122223332222 22211110 0
Q ss_pred cCccceeeecccCCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchH
Q 035933 298 TKEPFLNLIADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTN 376 (405)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~ 376 (405)
......|. ......++|..+||+|+|||||.++|+.|||+|+||+||..|+++|.... +....++|+.|+++|++++.
T Consensus 284 i~~~~~w~-~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~ 362 (545)
T PRK06126 284 VLSVVPWT-GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAA 362 (545)
T ss_pred EEeecccc-hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHH
Confidence 00111122 23445677888999999999999999999999999999999999998763 33567899999999999999
Q ss_pred HHHHHHHHhhhhhc
Q 035933 377 KQVLHSRRVGLIKL 390 (405)
Q Consensus 377 ~~~~~s~~~~~~~~ 390 (405)
.++..|+.+...+.
T Consensus 363 ~~~~~s~~~~~~~~ 376 (545)
T PRK06126 363 RNTDYARRNADALG 376 (545)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998876554
No 32
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=4.5e-39 Score=311.15 Aligned_cols=341 Identities=17% Similarity=0.093 Sum_probs=213.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
|+++||+||||||+|+++|+.|+++|++|+||||.+.+.. .+++..++++++++|+++|+.+ .+...+.+... .
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~---~~ra~~l~~~~~e~l~~lGl~~-~l~~~~~~~~~--~ 74 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFP---GSRGKGIQPRTQEVFDDLGVLD-RVVAAGGLYPP--M 74 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCc---CccceeecHHHHHHHHHcCcHH-HHHhcCccccc--e
Confidence 3468999999999999999999999999999999987643 4578889999999999999854 44444433221 1
Q ss_pred ceecCcccee-eeecc------cCCc-ccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCC
Q 035933 85 RAVDREKNIC-RVLAR------DENF-NYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTD 154 (405)
Q Consensus 85 ~~~~~~~~~~-~~~~~------~~~~-~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g 154 (405)
..+....... ..+.. ...+ ....++|..+++.|.+.+. .++ +++++++++++.++ ..++++++...++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~--~~v~v~~~~~~~~ 152 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDA--DGVTARVAGPAGE 152 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcC--CcEEEEEEeCCCe
Confidence 1121111111 11100 1111 2356889999999999884 477 99999999998543 3566664322333
Q ss_pred ceeEEeeeEEEeecCCcccccccccCCCCC-CcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCC-eEEE
Q 035933 155 VIIDVVGDLLVAADGSRSSVRQTFLPDSKL-RYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPG-THTV 232 (405)
Q Consensus 155 ~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 232 (405)
+ ++++|+||+|||.+|.+|+.+...... .+.....+...+..+.. + ....+.+..+. ..+.
T Consensus 153 ~--~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~ 215 (502)
T PRK06184 153 E--TVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGL-------------D--RDAWHQWPDGDMGMIA 215 (502)
T ss_pred E--EEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecC-------------C--CcceEEccCCCCcEEE
Confidence 3 489999999999999999998543221 11110111111111110 0 01122223333 5667
Q ss_pred EEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCC
Q 035933 233 LYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPL 312 (405)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (405)
++|+.++.. |.++...+... ....+++.+.+++...... ..+ . +........+.. .....
T Consensus 216 ~~p~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~--~~~-~-~~~~~~~~~~~~-~~~~a 275 (502)
T PRK06184 216 LCPLPGTDL-FQIQAPLPPGG--------------EPDLSADGLTALLAERTGR--TDI-R-LHSVTWASAFRM-NARLA 275 (502)
T ss_pred EEEccCCCe-EEEEEEcCCCc--------------cCCCCHHHHHHHHHHhcCC--CCc-c-eeeeeeeecccc-ceeEh
Confidence 788866542 33333322211 0112233333333322110 111 0 000000001111 12223
Q ss_pred CcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhc
Q 035933 313 TQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKL 390 (405)
Q Consensus 313 ~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~ 390 (405)
++|..+||+|+|||||.++|+.|||+|+||+||..|++.|..........+|+.|+++|++++..++..++.+.....
T Consensus 276 ~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 276 DRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPVAAAVLGLSTELLDAIK 353 (502)
T ss_pred hhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567789999999999999999999999999999999999986532366789999999999999999999998877654
No 33
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=3.2e-39 Score=303.79 Aligned_cols=341 Identities=18% Similarity=0.165 Sum_probs=223.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC--CCCcceeeCccHHHHHHHhccChhhhhc-ccCCccccccc
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN--PTGAGIALHLLSQKIVKSWLHQPDLLHN-ITLPLTIDQNR 85 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 85 (405)
||+||||||||+++|+.|+++|++|+||||.+.++... ..++++.+++++...|+++|+.+ .+.. ...+... ..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~-~~~~~~~~~~~~--~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWD-KIEPDRAQPIRD--IH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchh-hhhhhcCCCceE--EE
Confidence 79999999999999999999999999999999875422 23578999999999999998854 3333 3433322 22
Q ss_pred eecCccceeeeecc-c--CCcccccccHHHHHHHHHhcCC-Cc-e-EEecceEEEEEEecCCCeEEEEEeecCCCceeEE
Q 035933 86 AVDREKNICRVLAR-D--ENFNYLQAHWTDLHGLIYNTLP-VE-I-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDV 159 (405)
Q Consensus 86 ~~~~~~~~~~~~~~-~--~~~~~~~~~r~~l~~~L~~~~~-~~-~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~ 159 (405)
.++........+.. . .....+.++|..+.+.|.+.+. .+ + ++++++|++++.+ ++.++++ +++|.. +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~~~v~---~~~g~~--~ 150 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH--SDHVELT---LDDGQQ--L 150 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCeeEEE---ECCCCE--E
Confidence 22222111111111 1 1122356899999999999874 34 6 9999999999853 3456666 557765 8
Q ss_pred eeeEEEeecCCcccccccccCCCC-CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeC
Q 035933 160 VGDLLVAADGSRSSVRQTFLPDSK-LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMY 238 (405)
Q Consensus 160 ~~d~vV~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 238 (405)
++|+||+|||.+|.+|+.+..... ..+. ...+...+..+... ....+..+.+++.++++|.++
T Consensus 151 ~~~~vi~adG~~S~vr~~l~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~p~~~ 214 (385)
T TIGR01988 151 RARLLVGADGANSKVRQLAGIPTTGWDYG-QSAVVANVKHERPH---------------QGTAWERFTPTGPLALLPLPD 214 (385)
T ss_pred EeeEEEEeCCCCCHHHHHcCCCccccccC-CeEEEEEEEecCCC---------------CCEEEEEecCCCCEEEeECCC
Confidence 999999999999999999864332 2222 22222323222110 111122334556677889998
Q ss_pred cceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccc
Q 035933 239 KRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (405)
+..++.|..+..... . ....+.+. +.+.+.+.+.+.+.++ ........+.+. ..+.++|..+
T Consensus 215 ~~~~~~~~~~~~~~~------------~-~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (385)
T TIGR01988 215 NRSSLVWTLPPEEAE------------R-LLALSDEE---FLAELQRAFGSRLGAI-TLVGERHAFPLS-LTHAKRYVAP 276 (385)
T ss_pred CCeEEEEECCHHHHH------------H-HHcCCHHH---HHHHHHHHHhhhcCce-EeccCcceeech-hhhhhheecC
Confidence 888887775432211 0 00011221 2222222222221111 111111222222 2344567789
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--CC--cHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--PE--NLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--~~--~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
||+|+|||||.++|++|||+|+||+||..|++.|.... +. ...++|+.|+++|++++...+..++.+.+++....
T Consensus 277 ~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~ 355 (385)
T TIGR01988 277 RLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDF 355 (385)
T ss_pred ceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999998753 11 24799999999999999999999999999887643
No 34
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=2.7e-39 Score=305.83 Aligned_cols=344 Identities=15% Similarity=0.123 Sum_probs=221.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 8 PKAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
+||+||||||||+++|+.|++.| ++|+|+||.+.... ...++++.++++++++|+++|+.+ .+...+.+.......
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~-~~~~~~~~l~~~~~~~l~~lGl~~-~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAW-SRDPRASAIAAAARRMLEALGVWD-EIAPEAQPITDMVIT 79 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC-CCCcceEEecHHHHHHHHHCCChh-hhhhhcCcccEEEEE
Confidence 79999999999999999999995 99999999976432 124678999999999999999854 444444433221111
Q ss_pred eecCccce---eeeeccc--CCcc-cccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCcee
Q 035933 86 AVDREKNI---CRVLARD--ENFN-YLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVII 157 (405)
Q Consensus 86 ~~~~~~~~---~~~~~~~--~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~ 157 (405)
...+.... ...+... ...+ .+.++|..+.+.|.+.+. .|+ ++++++|++++.+ +..+.++ +++|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~v~v~---~~~g~~- 153 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETR--DEGVTVT---LSDGSV- 153 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCEEEEE---ECCCCE-
Confidence 11111100 0111111 1222 246899999999999874 478 9999999999743 4456666 456765
Q ss_pred EEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 158 DVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 158 ~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
+++|+||+|||.+|.+|+.++............+...+..... . .......+.++++.+++|++
T Consensus 154 -~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~g~~~~~Pl~ 217 (403)
T PRK07333 154 -LEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERP--------------H-GGRAEEHFLPAGPFAILPLK 217 (403)
T ss_pred -EEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCC--------------C-CCEEEEEeCCCCceEEeECC
Confidence 8999999999999999998754332222222222222222110 0 11123334566677889998
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcc
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW 317 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (405)
++..++.|..+..... .. .......+ .+.+...+...+..+.. ......+... ..+.++|..
T Consensus 218 ~~~~~~~~~~~~~~~~------------~~-~~~~~~~~---~~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 279 (403)
T PRK07333 218 GNRSSLVWTERTADAE------------RL-VALDDLVF---EAELEQRFGHRLGELKV-LGKRRAFPLG-LTLARSFVA 279 (403)
T ss_pred CCCeEEEEECCHHHHH------------HH-HCCCHHHH---HHHHHHHhhhhcCceEe-ccCccEeech-hhhhhhccC
Confidence 8887776653322111 00 00111111 11221111111111100 1111112221 335567888
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
+||+|||||||.++|+.|||+|+||+||..|+++|.... +....++|+.|+++|+++...++..++.+.++++...
T Consensus 280 grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~ 359 (403)
T PRK07333 280 PRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDS 359 (403)
T ss_pred CCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999998653 1246899999999999999999999999998877543
No 35
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=5.1e-39 Score=302.47 Aligned_cols=345 Identities=16% Similarity=0.129 Sum_probs=218.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC---CCCcceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN---PTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
+.+||+||||||||+++|+.|+++|++|+|||+.+...... ...+...+++++.++|+++|+.+........+....
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL 83 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence 46899999999999999999999999999999986432211 112456899999999999998543322222222110
Q ss_pred ccceecCccceeee-ecccCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeE
Q 035933 83 QNRAVDREKNICRV-LARDENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIID 158 (405)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~ 158 (405)
....+.... .... .........+.++|..|++.|.+.+. .++ ++++++|.+++.+ +..++|+ +++|++
T Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~~~v~---~~~g~~-- 155 (391)
T PRK08020 84 ETWEWETAH-VVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRD--DDGWELT---LADGEE-- 155 (391)
T ss_pred EEEeCCCCe-EEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEc--CCeEEEE---ECCCCE--
Confidence 111111111 1000 00011122356899999999998774 377 8899999998743 3356665 456654
Q ss_pred EeeeEEEeecCCcccccccccCCC-CCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 159 VVGDLLVAADGSRSSVRQTFLPDS-KLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 159 ~~~d~vV~AdG~~S~vr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
+++|+||+|||.+|.+|+.+.... ...|...+.+ ..+..+.. . ....+..+.+.+...++|..
T Consensus 156 ~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~-~~~~~~~~--------------~-~~~~~~~~~~~g~~~~~p~~ 219 (391)
T PRK08020 156 IQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCML-ISVKCENP--------------P-GDSTWQQFTPSGPRAFLPLF 219 (391)
T ss_pred EEeCEEEEeCCCCchhHHHcCCCccccCCCceEEE-EEEEecCC--------------C-CCEEEEEEcCCCCEEEeECC
Confidence 899999999999999999986432 2334433322 22222211 0 01112223333445567887
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcc
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW 317 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (405)
++..+++|+....... .. ...+ .+++.+.+...|.+.+.++.... ...+.+. ..+.++|..
T Consensus 220 ~~~~~~v~~~~~~~~~------------~~-~~~~---~~~~~~~l~~~~~~~~~~~~~~~--~~~~pl~-~~~~~~~~~ 280 (391)
T PRK08020 220 DNWASLVWYDSPARIR------------QL-QAMS---MAQLQQEIAAHFPARLGAVTPVA--AGAFPLT-RRHALQYVQ 280 (391)
T ss_pred CCcEEEEEECCHHHHH------------HH-HCCC---HHHHHHHHHHHhhhhccceEecc--ccEeecc-eeehhhhcc
Confidence 7777777765432111 00 0111 22333333344444433321111 1122232 234667888
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
+|++|+|||||.++|+.|||+|+||+||..|+++|.+.. +.....+|+.|+++|+++....+..+..+.+++....
T Consensus 281 ~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~ 360 (391)
T PRK08020 281 PGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNL 360 (391)
T ss_pred CcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999998652 1135789999999999999998888888888877643
No 36
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=301.20 Aligned_cols=341 Identities=14% Similarity=0.109 Sum_probs=221.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC----CcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAG----WDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTI 81 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g----~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (405)
+.+||+||||||+|+++|+.|++.| ++|+|+|+.+.+.. ....+++.+++.++.+|+++++... ...+..
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-~~~~r~~~l~~~~~~~L~~lg~~~~----~~~~~~- 83 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS-ANDPRAIALSHGSRVLLETLGAWPA----DATPIE- 83 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC-CCCceEEEecHHHHHHHHhCCCchh----cCCccc-
Confidence 4689999999999999999999987 47999999865432 1234689999999999999997543 222221
Q ss_pred cccceecCccceeeee-ccc--CCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCc-
Q 035933 82 DQNRAVDREKNICRVL-ARD--ENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDV- 155 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~- 155 (405)
....++........+ ..+ .....+.++|..|++.|.+.+. .++ +.+++++.+++ ++...|+++ +.+++
T Consensus 84 -~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~--~~~~~v~v~---~~~~~g 157 (398)
T PRK06996 84 -HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPA--QDADGVTLA---LGTPQG 157 (398)
T ss_pred -EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeee--ecCCeEEEE---ECCCCc
Confidence 112221111000011 111 1222457999999999999885 467 99999999987 444567776 33331
Q ss_pred eeEEeeeEEEeecCC-cccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEE
Q 035933 156 IIDVVGDLLVAADGS-RSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLY 234 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~-~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (405)
..++++|+||+|||. .|.+|+.++......+.+..++.+.++.+... ....+..+.+.+.+.++
T Consensus 158 ~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~---------------~~~~~~~~~~~G~~~~l 222 (398)
T PRK06996 158 ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPR---------------PGWAWERFTHEGPLALL 222 (398)
T ss_pred ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCC---------------CCEEEEEecCCCCeEEe
Confidence 134999999999997 57788877655544555555666655543211 01112223445567777
Q ss_pred EeeCcc---eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCC
Q 035933 235 ELMYKR---LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDP 311 (405)
Q Consensus 235 p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (405)
|..++. .+++|..+.+... .....+.+. +.+.+.+.+...+..+.... ....+.+. ...
T Consensus 223 p~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~-~~~~~~l~-~~~ 284 (398)
T PRK06996 223 PLGGPRQADYALVWCCAPDEAA-------------RRAALPDDA---FLAELGAAFGTRMGRFTRIA-GRHAFPLG-LNA 284 (398)
T ss_pred ECCCCCCCcEEEEEECCHHHHH-------------HHHcCCHHH---HHHHHHHHhccccCceEEec-ceEEEeee-ccc
Confidence 887654 5566655433211 000111222 22222222322222211111 11122222 334
Q ss_pred CCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcC
Q 035933 312 LTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLG 391 (405)
Q Consensus 312 ~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~ 391 (405)
.++|..+||+|||||||.++|+.|||+|+||+||..|+++|... ....++|+.|+++|++++..++..++.+.++++.
T Consensus 285 ~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~--~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~ 362 (398)
T PRK06996 285 ARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH--GATPLALATFAARRALDRRVTIGATDLLPRLFTV 362 (398)
T ss_pred ccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788899999999999999999999999999999999999763 2356789999999999999999999999999886
Q ss_pred CC
Q 035933 392 LP 393 (405)
Q Consensus 392 ~~ 393 (405)
..
T Consensus 363 ~~ 364 (398)
T PRK06996 363 DS 364 (398)
T ss_pred Cc
Confidence 44
No 37
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=306.75 Aligned_cols=341 Identities=18% Similarity=0.143 Sum_probs=217.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
++||+||||||+|+++|+.|+++|++|+||||.+.+. ..++++.++++++++|+++|+.+ .+...+.+........
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~---~~~ra~~l~~~~~e~l~~lGl~~-~l~~~~~~~~~~~~~~ 77 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETV---PYSKALTLHPRTLEILDMRGLLE-RFLEKGRKLPSGHFAG 77 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC---CCcceeEecHHHHHHHHhcCcHH-HHHhhcccccceEEec
Confidence 4899999999999999999999999999999998764 36789999999999999999854 4444333322111111
Q ss_pred ecCccceeeeecccCCcc-cccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 87 VDREKNICRVLARDENFN-YLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
......+. ..+...+ .+.++|..+++.|.+.+. .++ +++++++++++.++ ..+++++. ..+| ..++++|+
T Consensus 78 ~~~~~~~~---~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~-~~~g-~~~i~a~~ 150 (493)
T PRK08244 78 LDTRLDFS---ALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDG--DGVEVVVR-GPDG-LRTLTSSY 150 (493)
T ss_pred ccccCCcc---cCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcC--CeEEEEEE-eCCc-cEEEEeCE
Confidence 11101010 0111122 256889999999998774 577 99999999997543 45665543 2244 23589999
Q ss_pred EEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcceeE
Q 035933 164 LVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRLNW 243 (405)
Q Consensus 164 vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 243 (405)
||+|||.+|.+|+.+..........+..+.+.+..... + ....+..+.+++.++++|.+++...+
T Consensus 151 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~g~~~~~P~~~~~~~~ 215 (493)
T PRK08244 151 VVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDP-------------P--PSSVLSLCTREGGVMIVPLSGGIYRV 215 (493)
T ss_pred EEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCC-------------C--CcceeEEEeCCceEEEEECCCCeEEE
Confidence 99999999999998853322111122222222211111 0 11123345667788899998887666
Q ss_pred EEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccccEEEE
Q 035933 244 IWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDNVVLI 323 (405)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lv 323 (405)
.+..+..... ......+.+ ++.+.+.+.....+.. ................++|..+||+|+
T Consensus 216 ~~~~~~~~~~------------~~~~~~~~~---~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~gRv~L~ 277 (493)
T PRK08244 216 LIIDPERPQV------------PKDEPVTLE---ELKTSLIRICGTDFGL---NDPVWMSRFGNATRQAERYRSGRIFLA 277 (493)
T ss_pred EEEcCCcccc------------cCCCCCCHH---HHHHHHHHhhCCCCCc---CCeeEEEecccceeeHhhhccCcEEEe
Confidence 5543221111 000011222 2222222211111100 001110000011223456777999999
Q ss_pred ccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcC
Q 035933 324 GDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLG 391 (405)
Q Consensus 324 GDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~ 391 (405)
|||||.++|++|||+|+||+||..|++.|.... .......|+.|+++|+++...++..++.+.+++..
T Consensus 278 GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~ 346 (493)
T PRK08244 278 GDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFDF 346 (493)
T ss_pred ecceeccCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 999999999999999999999999999998753 34467889999999999999999998888887754
No 38
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=7e-38 Score=296.33 Aligned_cols=348 Identities=19% Similarity=0.147 Sum_probs=226.2
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccC-Cc
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITL-PL 79 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~ 79 (405)
|+.. +.+||+||||||+|+++|+.|+++|++|+|+|+++.... ..++..+++.+.++|+++|+.. .+..... +.
T Consensus 1 ~~~~-~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~---~~r~~~l~~~s~~~L~~lG~~~-~~~~~~~~~~ 75 (407)
T PRK06185 1 MAEV-ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR---DFRGDTVHPSTLELMDELGLLE-RFLELPHQKV 75 (407)
T ss_pred CCcc-ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc---cccCceeChhHHHHHHHcCChh-HHhhccccee
Confidence 4433 468999999999999999999999999999999875432 3457889999999999999854 3433222 21
Q ss_pred cccccceecCccceee-eec-ccCCcc-cccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCC
Q 035933 80 TIDQNRAVDREKNICR-VLA-RDENFN-YLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRT 153 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~ 153 (405)
. ....+........ .+. .....+ ...+++..+.+.|.+.+. .++ +++++++.++..+++ ..+.|.+. ..+
T Consensus 76 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~-~v~~v~~~-~~~ 151 (407)
T PRK06185 76 R--TLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG-RVTGVRAR-TPD 151 (407)
T ss_pred e--eEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-EEEEEEEE-cCC
Confidence 1 1222221111111 111 111112 245788899999988773 377 999999999985432 22223322 344
Q ss_pred CceeEEeeeEEEeecCCcccccccccCCCCC-CcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEE
Q 035933 154 DVIIDVVGDLLVAADGSRSSVRQTFLPDSKL-RYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTV 232 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (405)
|+ .++++|+||+|||.+|.+|+.++..... .+.....+ ..+..+. + .....+..+.+++.++
T Consensus 152 g~-~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~-~~~~~~~--------------~-~~~~~~~~~~~~g~~~ 214 (407)
T PRK06185 152 GP-GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLW-FRLPREP--------------D-DPESLMGRFGPGQGLI 214 (407)
T ss_pred Cc-EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEE-EecCCCC--------------C-CCcccceEecCCcEEE
Confidence 53 3589999999999999999988644332 23222222 2111110 0 0112234567778888
Q ss_pred EEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcC---ccceeeeccc
Q 035933 233 LYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETK---EPFLNLIADC 309 (405)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 309 (405)
++|.. +...+.|..+..... .......+.+.+.+.. +.|.+.+.+.... ......+. .
T Consensus 215 llP~~-~~~~i~~~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~l~-~ 275 (407)
T PRK06185 215 MIDRG-DYWQCGYVIPKGGYA----------------ALRAAGLEAFRERVAE-LAPELADRVAELKSWDDVKLLDVR-V 275 (407)
T ss_pred EEcCC-CeEEEEEEecCCCch----------------hhhhhhHHHHHHHHHH-hCccHHHHHhhcCCccccEEEEEe-c
Confidence 88987 667777777543322 1112223444444433 3344443333221 11122222 3
Q ss_pred CCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC--CCcHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 035933 310 DPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG--PENLHSALEEHKSVRLPVTNKQVLHSRRVGL 387 (405)
Q Consensus 310 ~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~--~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 387 (405)
...+.+..+|++|+|||||.++|++|||+|+||+||..|++.|.+.. .+.....|+.|+++|+++...++..+..+.+
T Consensus 276 ~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~ 355 (407)
T PRK06185 276 DRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQR 355 (407)
T ss_pred cccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999998653 2234589999999999999999999999999
Q ss_pred hhcCCC
Q 035933 388 IKLGLP 393 (405)
Q Consensus 388 ~~~~~~ 393 (405)
++....
T Consensus 356 ~~~~~~ 361 (407)
T PRK06185 356 RLLAPA 361 (407)
T ss_pred hhcccc
Confidence 887544
No 39
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.5e-38 Score=298.53 Aligned_cols=345 Identities=18% Similarity=0.151 Sum_probs=219.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHc---CCcEEEEccCCCCCCC--CCCCcceeeCccHHHHHHHhccChhhhhcccCCc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILA---GWDVVVIEKTRGPPTG--NPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPL 79 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~---g~~v~i~E~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (405)
|+.+||+||||||||+++|+.|+++ |++|+||||....... ...++++.++++++.+|+++|+.+ .+...+.+.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~-~~~~~~~~~ 79 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQ-ALADCATPI 79 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChh-hhHhhcCCc
Confidence 3568999999999999999999998 9999999996322111 112458899999999999999854 444433332
Q ss_pred cccccceecCccce-eeeecccCCc--ccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCC
Q 035933 80 TIDQNRAVDREKNI-CRVLARDENF--NYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRT 153 (405)
Q Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~ 153 (405)
.. ....+..... ........+. ..+.++|..|.+.|.+.+. .++ ++++++|+++.. ++..++++ +++
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--~~~~~~v~---~~~ 152 (395)
T PRK05732 80 TH--IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER--TQGSVRVT---LDD 152 (395)
T ss_pred cE--EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--cCCeEEEE---ECC
Confidence 21 1111111100 0111111111 2246888999999988763 367 899999999874 34456666 456
Q ss_pred CceeEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEE
Q 035933 154 DVIIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVL 233 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (405)
|.. +++|+||+|||.+|.+|+.+.......+.+...+...+...... . ...+..+.+++...+
T Consensus 153 g~~--~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~g~~~~ 215 (395)
T PRK05732 153 GET--LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAH--------------Q-GRAFERFTEHGPLAL 215 (395)
T ss_pred CCE--EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCC--------------C-CEEEEeecCCCCEEE
Confidence 654 89999999999999999988654443333434444443322110 0 111122334455678
Q ss_pred EEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCC
Q 035933 234 YELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLT 313 (405)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (405)
+|.+++...++|+.+.+... .......+...+.+.+. +...+..+. .......+.+. ....+
T Consensus 216 ~p~~~g~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~l~-~~~~~ 277 (395)
T PRK05732 216 LPMSDGRCSLVWCHPLEDAE------------EVLSWSDAQFLAELQQA----FGWRLGRIT-HAGKRSAYPLA-LVTAA 277 (395)
T ss_pred eECCCCCeEEEEECCHHHHH------------HHHcCCHHHHHHHHHHH----HHhhhccee-ecCCcceeccc-ccchh
Confidence 89988888777776543221 00001112222222222 111111111 11111122222 22345
Q ss_pred cCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhh
Q 035933 314 QIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIK 389 (405)
Q Consensus 314 ~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~ 389 (405)
.|..+|++|+|||||.++|++|||+|+||+||..|+++|.... +....++|+.|+++|+++....+..++.+.+++
T Consensus 278 ~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~ 357 (395)
T PRK05732 278 QQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLF 357 (395)
T ss_pred hhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999996542 112468999999999999999999999999988
Q ss_pred cCC
Q 035933 390 LGL 392 (405)
Q Consensus 390 ~~~ 392 (405)
...
T Consensus 358 ~~~ 360 (395)
T PRK05732 358 ANR 360 (395)
T ss_pred cCC
Confidence 653
No 40
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=6.1e-38 Score=295.08 Aligned_cols=342 Identities=15% Similarity=0.132 Sum_probs=217.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC--CCCcceeeCccHHHHHHHhccChhhhhc-ccCCccccc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN--PTGAGIALHLLSQKIVKSWLHQPDLLHN-ITLPLTIDQ 83 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 83 (405)
++||+||||||||+++|+.|++.|++|+|+||.+.+.... ...+.+.++++++++|+++|+... +.. ...+...
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~-~~~~~~~~~~~-- 81 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQA-LDAARLAPVYD-- 81 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhh-hhhhcCCcceE--
Confidence 5899999999999999999999999999999998864311 123458899999999999987543 322 1112211
Q ss_pred cceecCcc-cee-eeecccCCcccccccHHHHHHHHHhcCC-Cc-e-EEecceEEEEEEecCCCeEEEEEeecCCCceeE
Q 035933 84 NRAVDREK-NIC-RVLARDENFNYLQAHWTDLHGLIYNTLP-VE-I-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIID 158 (405)
Q Consensus 84 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~-~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~ 158 (405)
........ .+. ...........+.++|..+.+.|.+.+. .+ + ++ ++++++++.+ +..++|+ +++|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~--~~~~~v~---~~~g~~-- 153 (388)
T PRK07608 82 MRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVD--PDAATLT---LADGQV-- 153 (388)
T ss_pred EEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEec--CCeEEEE---ECCCCE--
Confidence 11111111 011 0011111223456889999999999874 45 6 66 9999998743 3456666 456654
Q ss_pred EeeeEEEeecCCcccccccccCCCCC-CcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee
Q 035933 159 VVGDLLVAADGSRSSVRQTFLPDSKL-RYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM 237 (405)
Q Consensus 159 ~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (405)
+++|+||+|||.+|.+|+.++..... .+... .+...+..+. +. ....+.++.+++.++++|.+
T Consensus 154 ~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~p~~ 217 (388)
T PRK07608 154 LRADLVVGADGAHSWVRSQAGIKAERRPYRQT-GVVANFKAER--------------PH-RGTAYQWFRDDGILALLPLP 217 (388)
T ss_pred EEeeEEEEeCCCCchHHHhcCCCccccccCCE-EEEEEEEecC--------------CC-CCEEEEEecCCCCEEEeECC
Confidence 89999999999999999988643322 22221 1111111111 00 12234555777788889998
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCcc
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYW 317 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (405)
++...+.|....+... . ....+++.+.+.+.... ...+.. +........+.+. ..+.+.|..
T Consensus 218 ~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~ 279 (388)
T PRK07608 218 DGHVSMVWSARTAHAD------------E-LLALSPEALAARVERAS---GGRLGR-LECVTPAAGFPLR-LQRVDRLVA 279 (388)
T ss_pred CCCeEEEEECCHHHHH------------H-HHCCCHHHHHHHHHHHH---HHhcCC-ceecCCcceeecc-hhhhhhhhc
Confidence 8877666654322111 0 00112222222222211 111111 1111111122222 234567788
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC---CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCC
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG---PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLP 393 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~---~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~ 393 (405)
+|+++||||||+++|++|||+|+||+||..|+++|.... +....++|+.|+++|++++..++..++.+.+++...+
T Consensus 280 ~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~ 358 (388)
T PRK07608 280 PRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFALPG 358 (388)
T ss_pred CceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999997652 2224589999999999999999999999999887544
No 41
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=4.4e-37 Score=295.42 Aligned_cols=344 Identities=17% Similarity=0.107 Sum_probs=218.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
..+||+||||||+|+++|+.|+++|++|+|+||.+.... . ...|+.+++++.++|+++|+.+ .++....+.. ...
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~-~-r~~G~~L~p~g~~~L~~LGL~d-~l~~i~~~~~--~~~ 106 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP-D-RIVGELLQPGGVNALKELGMEE-CAEGIGMPCF--GYV 106 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc-c-hhhhhhcCHHHHHHHHHCCChh-hHhhcCccee--eeE
Confidence 458999999999999999999999999999999862111 1 1246789999999999999854 4555444432 222
Q ss_pred eecCccceeeeecccCCcccccccHHHHHHHHHhcC----CCce-EEecceEEEEEEecCC-----CeEEEEEeecCCC-
Q 035933 86 AVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL----PVEI-VFWGHLYLTFCISHDK-----STVNVKAKNLRTD- 154 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~-i~~~~~v~~i~~~~~~-----~~v~v~~~~~~~g- 154 (405)
..+....... ...........++|.++...|++.+ ..++ +. +.+++++..++.. .+++++ ..++
T Consensus 107 v~~~~G~~~~-i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~---~~~~~ 181 (567)
T PTZ00367 107 VFDHKGKQVK-LPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVEYT---EAEKY 181 (567)
T ss_pred EEECCCCEEE-ecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEEEe---cCCcc
Confidence 2222111111 1112222334567888888888765 3567 64 5578877543221 134433 2221
Q ss_pred --------------------ceeEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhcc
Q 035933 155 --------------------VIIDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAY 214 (405)
Q Consensus 155 --------------------~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (405)
+..++++|+||+|||.+|.+|+.+.... +.+.....|.+....... .
T Consensus 182 ~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~~------------l 248 (567)
T PTZ00367 182 DVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNVR------------L 248 (567)
T ss_pred cccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEeccc------------C
Confidence 1235899999999999999999986432 233344555554432111 1
Q ss_pred CCCCCceeEeecCCeEEEEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHH
Q 035933 215 PELGNGVHTDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATV 294 (405)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (405)
|. ......++++++.++++|+++++..+++.++.+... .. .+..+.+.+...+.+.+.+.+.
T Consensus 249 p~-~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p----------------~~-~~~~~~l~~~~~p~l~~~l~~~ 310 (567)
T PTZ00367 249 PK-EQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP----------------SL-EEQSEWLIEDVAPHLPENMRES 310 (567)
T ss_pred CC-CCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC----------------Ch-HHHHHHHHHhhcccCcHHHHHH
Confidence 11 122244568889999999998877665554433211 00 1111222222223334444443
Q ss_pred HHh----cCccceeeecccCCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-------C--CcHH
Q 035933 295 IKE----TKEPFLNLIADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-------P--ENLH 361 (405)
Q Consensus 295 ~~~----~~~~~~~~~~~~~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-------~--~~~~ 361 (405)
+.. ......+... ..|...+..+|++|||||||+++|++|||+|+||+||..|+++|.... . ..+.
T Consensus 311 f~~~l~~~~~l~~~p~~-~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~ 389 (567)
T PTZ00367 311 FIRASKDTKRIRSMPNA-RYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIE 389 (567)
T ss_pred HHHhhcccCCeEEeeHh-hCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHH
Confidence 321 1111122222 334445566899999999999999999999999999999999997531 0 1346
Q ss_pred HHHH----HHHhhcccchHHHHHHHHHhhhhhcC
Q 035933 362 SALE----EHKSVRLPVTNKQVLHSRRVGLIKLG 391 (405)
Q Consensus 362 ~~l~----~y~~~r~~~~~~~~~~s~~~~~~~~~ 391 (405)
++|+ .|++.|+++...++..|+.+.+++..
T Consensus 390 ~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~ 423 (567)
T PTZ00367 390 DAIQAAILSYARNRKTHASTINILSWALYSVFSS 423 (567)
T ss_pred HHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh
Confidence 6777 99999999999999999999998876
No 42
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-37 Score=292.51 Aligned_cols=333 Identities=17% Similarity=0.133 Sum_probs=209.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
|..+||+||||||+|+++|+.|+++|++|+||||.+.+... ..++..++++++++|+++|+.+ .+...+........
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~--~~Ra~~l~~~s~~~L~~lGl~~-~l~~~~~~~~~~~~ 77 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV--GSRAGGLHARTLEVLDQRGIAD-RFLAQGQVAQVTGF 77 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC--CcceeeECHHHHHHHHHcCcHH-HHHhcCCcccccee
Confidence 34689999999999999999999999999999999865321 2357789999999999999854 44333322211110
Q ss_pred ceecCccceeeeecccCC-cccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 85 RAVDREKNICRVLARDEN-FNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
.. .. + ........ ...+.+.+..+++.|.+.+. .++ ++++++|++++.+ +..++++ +.+|.+ +++
T Consensus 78 ~~---~~-~-~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~v~v~---~~~g~~--i~a 145 (488)
T PRK06834 78 AA---TR-L-DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQD--DTGVDVE---LSDGRT--LRA 145 (488)
T ss_pred ee---Ee-c-ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCeEEEE---ECCCCE--EEe
Confidence 00 00 0 00000111 12245788999999999885 477 9999999999854 3456666 456654 899
Q ss_pred eEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEee-Ccc
Q 035933 162 DLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELM-YKR 240 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~ 240 (405)
|+||+|||.+|.+|+.++............+...+..+.. +.+ .....+.+...+.|.. .+.
T Consensus 146 ~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~-------------~~~----~~~~~~~g~~~~~~~~~~~~ 208 (488)
T PRK06834 146 QYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEE-------------PEW----GVHRDALGIHAFGRLEDEGP 208 (488)
T ss_pred CEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCC-------------CCc----ceeeCCCceEEEeccCCCCe
Confidence 9999999999999999853322111111111111111110 000 0112223334445554 444
Q ss_pred eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccccE
Q 035933 241 LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDNV 320 (405)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 320 (405)
..+.|..+..... ...+. +++.+.+...+...+.. ................++|..+||
T Consensus 209 ~~~~~~~~~~~~~---------------~~~~~---~~~~~~l~~~~g~~~~~---~~~~~~~~~~~~~r~a~~~~~gRV 267 (488)
T PRK06834 209 VRVMVTEKQVGAT---------------GEPTL---DDLREALIAVYGTDYGI---HSPTWISRFTDMARQAASYRDGRV 267 (488)
T ss_pred EEEEEecCCCCCC---------------CCCCH---HHHHHHHHHhhCCCCcc---ccceeEEeccccceecccccCCcE
Confidence 5555543221111 01122 22233333323222211 011111111111334567888999
Q ss_pred EEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhc
Q 035933 321 VLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKL 390 (405)
Q Consensus 321 ~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~ 390 (405)
+|+|||||.++|++|||+|+||+||..|++.|.... +......|+.|+++|++....++..+..+..++.
T Consensus 268 ~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~ 338 (488)
T PRK06834 268 LLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVALLR 338 (488)
T ss_pred EEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998753 3457899999999999999999998888777664
No 43
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=7.8e-37 Score=298.43 Aligned_cols=341 Identities=16% Similarity=0.189 Sum_probs=209.8
Q ss_pred CCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccc
Q 035933 2 RERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTI 81 (405)
Q Consensus 2 ~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (405)
+....++||+||||||+|+++|+.|+++|++|+||||++.+.. .++++.++++++++|+++|+.. .+...+.+...
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~---~~ra~~l~~~~~~~l~~lGl~~-~l~~~~~~~~~ 93 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST---GSRAICFAKRSLEIFDRLGCGE-RMVDKGVSWNV 93 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC---CCeEEEEcHHHHHHHHHcCCcH-HHHhhCceeec
Confidence 3333568999999999999999999999999999999986532 4678999999999999999854 34443333211
Q ss_pred cccceecCccceeee-ecc--cCCc-ccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCC
Q 035933 82 DQNRAVDREKNICRV-LAR--DENF-NYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTD 154 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g 154 (405)
... .... ...... ... .... ....+.|..+++.|.+.+. .++ +++++++++++.++ ..+++++. ..+|
T Consensus 94 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~--~~v~v~~~-~~~g 168 (547)
T PRK08132 94 GKV-FLRD-EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHD--DGVTLTVE-TPDG 168 (547)
T ss_pred eeE-EeCC-CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcC--CEEEEEEE-CCCC
Confidence 111 1111 111111 111 1111 2345889999999999774 367 99999999998544 35555533 2344
Q ss_pred ceeEEeeeEEEeecCCcccccccccCCCCC-CcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEe--ecCCeEE
Q 035933 155 VIIDVVGDLLVAADGSRSSVRQTFLPDSKL-RYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTD--LVPGTHT 231 (405)
Q Consensus 155 ~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 231 (405)
. .++++|+||+|||.+|.+|+.++..... .+.....+ ..+..... ++. ....++. ..++..+
T Consensus 169 ~-~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~-~d~~~~~~------------~~~-~~~~~~~~~~~~~~~~ 233 (547)
T PRK08132 169 P-YTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLI-ADVKMKAD------------FPT-ERWFWFDPPFHPGQSV 233 (547)
T ss_pred c-EEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEE-EEEEecCC------------CCC-eeeEEEeccCCCCcEE
Confidence 3 3589999999999999999988643322 12111111 11111100 110 0111111 1234445
Q ss_pred EEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc-cceee---ec
Q 035933 232 VLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE-PFLNL---IA 307 (405)
Q Consensus 232 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~ 307 (405)
++.|.+.+...+.+........ ......+ .+ .+.+.+++..... ...+. ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~---~~--------~~~l~~~~~~~~~~~~~~~~~~~~ 288 (547)
T PRK08132 234 LLHRQPDNVWRIDFQLGWDADP--------------EAEKKPE---NV--------IPRVRALLGEDVPFELEWVSVYTF 288 (547)
T ss_pred EEEeCCCCeEEEEEecCCCCCc--------------hhhcCHH---HH--------HHHHHHHcCCCCCeeEEEEEeeee
Confidence 5555444322221111111000 0001111 11 1222222221111 11111 12
Q ss_pred ccCCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhh
Q 035933 308 DCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVG 386 (405)
Q Consensus 308 ~~~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 386 (405)
...+.++|..+||+|+|||||.++|++|||+|+||+||..|++.|.... +....++|+.|+++|++++..++..++.+.
T Consensus 289 ~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~ 368 (547)
T PRK08132 289 QCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRST 368 (547)
T ss_pred eeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888999999999999999999999999999999999997653 345789999999999999999999998888
Q ss_pred hhhcC
Q 035933 387 LIKLG 391 (405)
Q Consensus 387 ~~~~~ 391 (405)
.++..
T Consensus 369 ~~~~~ 373 (547)
T PRK08132 369 DFITP 373 (547)
T ss_pred hhhCC
Confidence 87654
No 44
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=5e-36 Score=286.22 Aligned_cols=334 Identities=17% Similarity=0.153 Sum_probs=209.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
...+||+||||||+|+++|+.|+++|++|+||||.+.+.. .+++..++++++++|+.+|+.. .+...+.+... .
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~---~gra~~l~~~tle~L~~lGl~~-~l~~~~~~~~~--~ 76 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE---VGRADALNARTLQLLELVDLFD-ELYPLGKPCNT--S 76 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc---cccceEeCHHHHHHHHhcChHH-HHHhhCcccee--E
Confidence 3458999999999999999999999999999999987643 5778899999999999998754 33333333221 1
Q ss_pred ceecCccceeeeec-----c-cCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 85 RAVDREKNICRVLA-----R-DENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 85 ~~~~~~~~~~~~~~-----~-~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
..+.....+..... . ........+++..+++.|.+++. .|+ ++++++|++++.+++ .+++. ..+|++
T Consensus 77 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~v~---~~~g~~ 151 (487)
T PRK07190 77 SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCLTT---LSNGER 151 (487)
T ss_pred EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeEEE---ECCCcE
Confidence 11211110111000 0 11112356788999999998774 578 999999999986544 45554 345654
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCCCcC--ceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEE
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKLRYT--GYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLY 234 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (405)
++|++||+|||.+|.+|+.++........ .+......+..+ ++....... ...+.+.++++
T Consensus 152 --v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~--------------~~~~~~~~~-~~~~~g~~~~~ 214 (487)
T PRK07190 152 --IQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTD--------------FPKVPEIIV-FQAETSDVAWI 214 (487)
T ss_pred --EEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccC--------------CCCCcceEE-EEcCCCCEEEE
Confidence 89999999999999999998543322221 122222222211 111011111 22344556667
Q ss_pred EeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCc
Q 035933 235 ELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQ 314 (405)
Q Consensus 235 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (405)
|..++...++. ..+..+ ...+ ++.+.+.....+.-.+ + .............+-.++
T Consensus 215 p~~~~~~r~~~--~~~~~~-----------------~t~~---~~~~~l~~~~~~~~~~-~-~~~~w~s~~~~~~r~a~~ 270 (487)
T PRK07190 215 PREGEIDRFYV--RMDTKD-----------------FTLE---QAIAKINHAMQPHRLG-F-KEIVWFSQFSVKESVAEH 270 (487)
T ss_pred ECCCCEEEEEE--EcCCCC-----------------CCHH---HHHHHHHHhcCCCCCc-e-EEEEEEEEeeeCcEehhh
Confidence 77555333222 111111 1122 2222222211111000 0 000111111111333456
Q ss_pred Cc-cccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhc
Q 035933 315 IY-WDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKL 390 (405)
Q Consensus 315 ~~-~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~ 390 (405)
+. .+||+|+|||||..+|++|||+|+||+||..|++.|.... .......|+.|+++|++....++..++...++..
T Consensus 271 ~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~~ 348 (487)
T PRK07190 271 FFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVRSTK 348 (487)
T ss_pred cCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 65 6999999999999999999999999999999999997653 3456899999999999999999999998877654
No 45
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=1.8e-34 Score=272.18 Aligned_cols=340 Identities=15% Similarity=0.136 Sum_probs=205.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
+++||+||||||||+++|+.|+++|++|+|+||+.... .+||.++. ...++++++.......... ...
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~--k~cgg~i~-----~~~l~~lgl~~~~~~~~i~-----~~~ 105 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNA--KPCGGAIP-----LCMVGEFDLPLDIIDRKVT-----KMK 105 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC--CCcccccc-----HhHHhhhcCcHHHHHHHhh-----hhe
Confidence 35899999999999999999999999999999986422 24665553 3556777764332221111 111
Q ss_pred eecCccceeeeec--ccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecC-CCeEEEEEeec----CCCce
Q 035933 86 AVDREKNICRVLA--RDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHD-KSTVNVKAKNL----RTDVI 156 (405)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~-~~~v~v~~~~~----~~g~~ 156 (405)
...+.. ....+. .........++|..|++.|.+++ +.|+ ++.+ ++.++....+ +..+.|++... .+|+.
T Consensus 106 ~~~p~~-~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~ 183 (450)
T PLN00093 106 MISPSN-VAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTP 183 (450)
T ss_pred EecCCc-eEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCc
Confidence 111111 001111 01111223589999999999977 4577 7655 5777764322 33455554321 01444
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEe----ecCCeEEE
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTD----LVPGTHTV 232 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 232 (405)
.++++|+||+|||.+|.+|+.+.... ......+...+..+.... . +. .....++ ..++.+.|
T Consensus 184 ~~v~a~~VIgADG~~S~vrr~lg~~~---~~~~~~~~~~~~~~~~~~-----~----~~--~~~~~~~~g~~~~p~~Y~W 249 (450)
T PLN00093 184 KTLEVDAVIGADGANSRVAKDIDAGD---YDYAIAFQERIKIPDDKM-----E----YY--EDLAEMYVGDDVSPDFYGW 249 (450)
T ss_pred cEEEeCEEEEcCCcchHHHHHhCCCC---cceeEEEEEEEeCChhhc-----c----cc--CCeEEEEeCCCCCCCceEE
Confidence 46999999999999999999985432 122223333333322100 0 00 1111222 24677889
Q ss_pred EEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcC--ccceeeecccC
Q 035933 233 LYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETK--EPFLNLIADCD 310 (405)
Q Consensus 233 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 310 (405)
+||..+ ..++.......... .+++.+.+.+.+. ..+.... ......+. ..
T Consensus 250 ifP~g~-~~~VG~g~~~~~~~----------------------~~~~~~~l~~~~~----~~l~~~~~~~~~~~~ip-~~ 301 (450)
T PLN00093 250 VFPKCD-HVAVGTGTVVNKPA----------------------IKKYQRATRNRAK----DKIAGGKIIRVEAHPIP-EH 301 (450)
T ss_pred EEECCC-cEEEEEEEccCCCC----------------------hHHHHHHHHHHhh----hhcCCCeEEEEEEEEcc-cc
Confidence 999884 44444432111111 1122222211111 1111000 00111121 23
Q ss_pred CCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCC----cHHHHHHHHHhhcccchHHHHHHHHHhh
Q 035933 311 PLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPE----NLHSALEEHKSVRLPVTNKQVLHSRRVG 386 (405)
Q Consensus 311 ~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~----~~~~~l~~y~~~r~~~~~~~~~~s~~~~ 386 (405)
+.+.+..+|++|||||||.++|++|+|++.||.+|..+|+.+.+.... .....|+.|++.++.........+..+.
T Consensus 302 ~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~ 381 (450)
T PLN00093 302 PRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQ 381 (450)
T ss_pred cccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667799999999999999999999999999999999999876311 2467799999999999999999999999
Q ss_pred hhhcCCCCCCccccee
Q 035933 387 LIKLGLPLPDRGLLIQ 402 (405)
Q Consensus 387 ~~~~~~~~~~~~~~~~ 402 (405)
+++.. +++.++.+++
T Consensus 382 ~~~~~-~~~~~~~~~~ 396 (450)
T PLN00093 382 KVFYR-SNPAREAFVE 396 (450)
T ss_pred HHHcC-CcHHHHHHHH
Confidence 99987 6677776654
No 46
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=1.3e-33 Score=264.74 Aligned_cols=338 Identities=14% Similarity=0.187 Sum_probs=198.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC-CCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKT-RGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
|||+||||||||+++|+.|++.|++|+|+||+ +.+ .+++.+ +++ ..++.+++..+.... .. .....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~---~~cg~~--i~~---~~l~~l~i~~~~~~~-~~----~~~~~ 67 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI---KPCGGA--IPP---CLIEEFDIPDSLIDR-RV----TQMRM 67 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc---CcCcCC--cCH---hhhhhcCCchHHHhh-hc----ceeEE
Confidence 69999999999999999999999999999998 322 234544 443 356666654322221 11 11111
Q ss_pred ecCccceeeeecccCCccc-ccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeec---CCCceeEEe
Q 035933 87 VDREKNICRVLARDENFNY-LQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNL---RTDVIIDVV 160 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~---~~g~~~~~~ 160 (405)
..+.... ..........+ ..++|..|++.|.+++ +.|+ ++.+ +|+++..+ +..+++++.+. .+|+..+++
T Consensus 68 ~~~~~~~-~~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~--~~~~~v~~~~~~~~~~~~~~~i~ 143 (388)
T TIGR02023 68 ISPSRVP-IKVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERD--RDGVTLTYRTPKKGAGGEKGSVE 143 (388)
T ss_pred EcCCCce-eeeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEc--CCeEEEEEEeccccCCCcceEEE
Confidence 1111100 01111111222 2589999999999987 4577 7544 68888744 34566664321 123334689
Q ss_pred eeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEe--ecCCeEEEEEEeeC
Q 035933 161 GDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTD--LVPGTHTVLYELMY 238 (405)
Q Consensus 161 ~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~ 238 (405)
+|+||+|||.+|.+|+.+..... .....++...+..+.... .++.....+++. +.++.+.|++|..+
T Consensus 144 a~~VI~AdG~~S~v~r~lg~~~~--~~~~~a~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~p~~y~wv~P~~~ 212 (388)
T TIGR02023 144 ADVVIGADGANSPVAKELGLPKN--LPRVIAYQERIKLPDDKM---------AYYEELADVYYGGEVSPDFYGWVFPKGD 212 (388)
T ss_pred eCEEEECCCCCcHHHHHcCCCCC--CcEEEEEEEEecCCchhc---------ccCCCeEEEEECCCcCCCceEEEeeCCC
Confidence 99999999999999998854322 112223333332221100 011000111211 34567888888864
Q ss_pred cceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccc
Q 035933 239 KRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (405)
..++........ .+ .+++.+.+...+.....+.+. .....+. ..+.+++..+
T Consensus 213 -~~~vg~~~~~~~-------------------~~---~~~~~~~l~~~~~~~~~~~~~----~~~~~ip-~~~~~~~~~~ 264 (388)
T TIGR02023 213 -HIAVGTGTGTHG-------------------FD---AKQLQANLRRRAGLDGGQTIR----REAAPIP-MKPRPRWDFG 264 (388)
T ss_pred -eeEEeEEECCCC-------------------CC---HHHHHHHHHHhhCCCCceEee----eeeEecc-ccccccccCC
Confidence 344433211100 01 122222222211100000000 0011111 3455667779
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCCCCcc
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLPDRG 398 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~ 398 (405)
++++||||||.++|++|+|++.||++|..+++.+.++...+..+.|+.|++.++....+....++....++. +++..++
T Consensus 265 ~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 343 (388)
T TIGR02023 265 RAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLYGTTFRVLRVLQMVYY-RSDRRRE 343 (388)
T ss_pred CEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHH
Confidence 999999999999999999999999999999999988753334678999999999989888888877777764 4555555
Q ss_pred ccee
Q 035933 399 LLIQ 402 (405)
Q Consensus 399 ~~~~ 402 (405)
++++
T Consensus 344 ~~~~ 347 (388)
T TIGR02023 344 VFVE 347 (388)
T ss_pred HHHH
Confidence 5543
No 47
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=5.1e-33 Score=260.37 Aligned_cols=338 Identities=13% Similarity=0.125 Sum_probs=203.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||||+++|+.|+++|++|+|+||++... .+|+.++ + ...++++++..+.+..... .....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~--~~cg~~i--~---~~~l~~~g~~~~~~~~~i~-----~~~~~ 68 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA--KPCGGAI--P---LCMVDEFALPRDIIDRRVT-----KMKMI 68 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC--CCccccc--c---HhhHhhccCchhHHHhhhc-----eeEEe
Confidence 589999999999999999999999999999986532 2355444 2 2456777664332221111 11111
Q ss_pred cCccceeeeec-ccCCcc-cccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEec-CCCeEEEEEeecC----CCceeE
Q 035933 88 DREKNICRVLA-RDENFN-YLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISH-DKSTVNVKAKNLR----TDVIID 158 (405)
Q Consensus 88 ~~~~~~~~~~~-~~~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~-~~~~v~v~~~~~~----~g~~~~ 158 (405)
.+.. ....+. ...... ...++|..|++.|.+++. .|+ ++.++ +.++.... .+..+.|++.... .|+..+
T Consensus 69 ~p~~-~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 146 (398)
T TIGR02028 69 SPSN-IAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCT 146 (398)
T ss_pred cCCc-eEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccE
Confidence 1111 101111 111112 246899999999999874 588 76664 76665322 2334555532221 144446
Q ss_pred EeeeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEe----ecCCeEEEEE
Q 035933 159 VVGDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTD----LVPGTHTVLY 234 (405)
Q Consensus 159 ~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 234 (405)
++|++||+|||.+|.+|+.+.... +.....+...+..+... ..+. .....++ ..|+++.|+|
T Consensus 147 i~a~~VIgADG~~S~v~~~~g~~~---~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~g~~~~p~gY~Wif 212 (398)
T TIGR02028 147 LEVDAVIGADGANSRVAKEIDAGD---YSYAIAFQERIRLPDEK---------MAYY--DDLAEMYVGDDVSPDFYGWVF 212 (398)
T ss_pred EEeCEEEECCCcchHHHHHhCCCC---cceEEEEEEEeeCChhh---------cccC--CCeEEEEeCCCCCCCceEEEE
Confidence 899999999999999999985432 12222332222222110 0000 1112222 3467789999
Q ss_pred EeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcC--ccceeeecccCCC
Q 035933 235 ELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETK--EPFLNLIADCDPL 312 (405)
Q Consensus 235 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 312 (405)
|..+ ..++....... ...++.+.+.+...+. ....... ......+. ..+.
T Consensus 213 P~~~-~~~VG~g~~~~----------------------~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~ip-~~~~ 264 (398)
T TIGR02028 213 PKCD-HVAVGTGTVAA----------------------KPEIKRLQSGIRARAA----GKVAGGRIIRVEAHPIP-EHPR 264 (398)
T ss_pred ECCC-eEEEEEEeCCC----------------------CccHHHHHHhhhhhhh----hccCCCcEEEEEEEecc-cccc
Confidence 9874 34443321110 0112233332211110 0010000 01111111 2234
Q ss_pred CcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCC--C--cHHHHHHHHHhhcccchHHHHHHHHHhhhh
Q 035933 313 TQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGP--E--NLHSALEEHKSVRLPVTNKQVLHSRRVGLI 388 (405)
Q Consensus 313 ~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~--~--~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~ 388 (405)
+.+..+|++|||||||.++|++|+|++.||.+|..+|+.+.++.. + ..+..|+.|++.++....+....+..+.++
T Consensus 265 ~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~ 344 (398)
T TIGR02028 265 PRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRV 344 (398)
T ss_pred ccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456679999999999999999999999999999999999987631 1 256789999999999999999999999999
Q ss_pred hcCCCCCCccccee
Q 035933 389 KLGLPLPDRGLLIQ 402 (405)
Q Consensus 389 ~~~~~~~~~~~~~~ 402 (405)
+.. ++.+++++++
T Consensus 345 ~~~-~~~~~~~~~~ 357 (398)
T TIGR02028 345 FYR-SNAGREAFVE 357 (398)
T ss_pred HcC-CcHHHHHHHH
Confidence 987 7777777765
No 48
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=3.8e-32 Score=254.70 Aligned_cols=335 Identities=18% Similarity=0.159 Sum_probs=210.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
+++||+||||||||++||+.|++.|++|+|+||+..++.+..++ -.+.+.. ++.+.+..... .... +....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~--~~~~~~~---l~~l~~~~~~~--i~~~--v~~~~ 72 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCG--GGLSPRA---LEELIPDFDEE--IERK--VTGAR 72 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcccc--ceechhh---HHHhCCCcchh--hhee--eeeeE
Confidence 36899999999999999999999999999999999987754432 3344433 33443322110 1111 11111
Q ss_pred eecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 86 AVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
........ ..... ....+.++|..|+++|.+.+ +.|+ ++.++++.++..++++..+.+. .+. .++++++
T Consensus 73 ~~~~~~~~--~~~~~-~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~-----~~~-~e~~a~~ 143 (396)
T COG0644 73 IYFPGEKV--AIEVP-VGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR-----AGD-DEVRAKV 143 (396)
T ss_pred EEecCCce--EEecC-CCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE-----cCC-EEEEcCE
Confidence 11111101 11111 14467899999999999888 4788 9999999999865544333332 232 4599999
Q ss_pred EEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcceeE
Q 035933 164 LVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRLNW 243 (405)
Q Consensus 164 vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 243 (405)
||+|||.+|.+++.+................+...+....... .........+.++.|+||..++..++
T Consensus 144 vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~-----------~~~~~~~~~~~Gy~wifP~~~~~~~V 212 (396)
T COG0644 144 VIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEE-----------FLYGPLDVGPGGYGWIFPLGDGHANV 212 (396)
T ss_pred EEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEE-----------EEecCCccCCCceEEEEECCCceEEE
Confidence 9999999999999987652222223334444444431100000 00011134678899999999998888
Q ss_pred EEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHh--cCccceeeecccCCCCc-CccccE
Q 035933 244 IWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKE--TKEPFLNLIADCDPLTQ-IYWDNV 320 (405)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~v 320 (405)
.+.+...... ..+ .. +.++++.. .+.+...+.. ........+....+... ++.+++
T Consensus 213 G~g~~~~~~~-----------------~~~-~~-~~l~~f~~--~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~ 271 (396)
T COG0644 213 GIGVLLDDPS-----------------LSP-FL-ELLERFKE--HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGV 271 (396)
T ss_pred EEEEecCCcC-----------------CCc-hH-HHHHHHHh--CcccchhccCCceEEEeeeecccCCcCCCccccCCE
Confidence 8876665411 111 11 22333322 1222222111 11111222332333333 677999
Q ss_pred EEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcC
Q 035933 321 VLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLG 391 (405)
Q Consensus 321 ~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~ 391 (405)
++|||||.+++|++|+|+..||.+|..+|+.|.+....+ ++.|..|++.++.........+....+++..
T Consensus 272 ~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~ 341 (396)
T COG0644 272 LLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-EEALAEYERLLRKSLAREDLKSLRLLKLLLR 341 (396)
T ss_pred EEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 999999999999999999999999999999998875334 7788889999988777777777777766664
No 49
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.1e-31 Score=246.08 Aligned_cols=313 Identities=18% Similarity=0.148 Sum_probs=178.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC-CCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN-PTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
+||+||||||||+++|+.|++. ++|+|+||++.+.... ...+|..+++++.+.|+++|+.... .....+... ....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~-~~~~~~~~~-~~~~ 78 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPK-DVIANPQIF-AVKT 78 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCc-ceeeccccc-eeeE
Confidence 7999999999999999999999 9999999998643211 1234677999999999999874210 000000000 0000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.+ .........+.++..++|..|++.|.+..+.++ +++++.+.+++..+ ..+.+++ .++|+..++++|+||
T Consensus 79 ~~----~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~--~~~g~~~~i~a~~vV 150 (351)
T PRK11445 79 ID----LANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWRED--DGYHVIF--RADGWEQHITARYLV 150 (351)
T ss_pred ec----ccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcC--CEEEEEE--ecCCcEEEEEeCEEE
Confidence 00 000111112234557999999999999777788 99999999998543 3566653 245654468999999
Q ss_pred eecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEe-ecCCeEEEEEEeeCcceeEE
Q 035933 166 AADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTD-LVPGTHTVLYELMYKRLNWI 244 (405)
Q Consensus 166 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~ 244 (405)
+|||.+|.+|+.+..... ...+..+......+... +. ....+. .....+.|.+|..+. ..++
T Consensus 151 ~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~------------~~--~~~~f~~~~~~~~~W~~p~~~~-~~~g 213 (351)
T PRK11445 151 GADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPV------------PF--YSCIFDNEITDCYSWSISKDGY-FIFG 213 (351)
T ss_pred ECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCCCCC------------CC--cceEEeccCCCceEEEeCCCCc-EEec
Confidence 999999999998864322 11222222211111000 00 000111 011234444544221 1110
Q ss_pred EEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCc--CccccEEE
Q 035933 245 WYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQ--IYWDNVVL 322 (405)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l 322 (405)
+.. +. ......++.+.+.+.+ ....+.+.+..... . +....+... ...+|++|
T Consensus 214 -~~~-~~------------------~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~vvl 268 (351)
T PRK11445 214 -GAY-PM------------------KDGRERFETLKEKLSA-FGFQFGKPVKTEAC-T---VLRPSRWQDFVCGKDNAFL 268 (351)
T ss_pred -ccc-cc------------------cchHHHHHHHHHHHHh-cccccccccccccc-c---ccCcccccccccCCCCEEE
Confidence 000 00 1111122222222211 11111111111110 0 010111122 23489999
Q ss_pred EccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHH
Q 035933 323 IGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNK 377 (405)
Q Consensus 323 vGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~ 377 (405)
||||||.++|++|+|++.|++||..|++.|.+.. +..++.|++.++....+
T Consensus 269 VGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~----~~~~~~y~~~~~~~~~~ 319 (351)
T PRK11445 269 IGEAAGFISPSSLEGISYALDSARILSEVLNKQP----EKLNTAYWRKTRKLRLK 319 (351)
T ss_pred EEcccCccCCccCccHHHHHHhHHHHHHHHHhcc----cchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998653 55678888877665443
No 50
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=100.00 E-value=3.3e-32 Score=273.24 Aligned_cols=326 Identities=16% Similarity=0.159 Sum_probs=203.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccCh-hhhhcccCCcccccc
Q 035933 8 PKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQP-DLLHNITLPLTIDQN 84 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 84 (405)
++|+||||||||+++|+.|++. |++|+|+||++... ..|.|+.++++++..|..++... ..+........ ..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~---~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~--~~ 75 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD---TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWD--DI 75 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc---ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCC--ce
Confidence 3799999999999999999998 89999999998753 36889999999988888765211 11111111100 01
Q ss_pred ceecCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeee
Q 035933 85 RAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGD 162 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d 162 (405)
....... .. ...+.++..+.|.+|.+.|.+.+. .|+ ++++++|.++. + . ..++|
T Consensus 76 ~~~~~g~----~~-~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~--~-----------~------~~~~D 131 (765)
T PRK08255 76 DVHFKGR----RI-RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQ--A-----------L------AADAD 131 (765)
T ss_pred EEEECCE----EE-EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh--h-----------h------hcCCC
Confidence 1111000 01 112334557899999999999885 578 99999887653 1 0 14799
Q ss_pred EEEeecCCcccccccccC----CCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCe-EEEEEEee
Q 035933 163 LLVAADGSRSSVRQTFLP----DSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGT-HTVLYELM 237 (405)
Q Consensus 163 ~vV~AdG~~S~vr~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~ 237 (405)
+||+|||.+|.+|+++.. .....+..+ .|.+....... +.. .......+. ....||..
T Consensus 132 ~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~-~w~g~~~~~~~--------~~~--------~~~~~~~g~~~~~~y~~~ 194 (765)
T PRK08255 132 LVIASDGLNSRIRTRYADTFQPDIDTRRCRF-VWLGTHKVFDA--------FTF--------AFEETEHGWFQAHAYRFD 194 (765)
T ss_pred EEEEcCCCCHHHHHHHHhhcCCceecCCCce-EEecCCCcccc--------eeE--------EEEecCCceEEEEEeeeC
Confidence 999999999999997632 111222222 23222110000 000 000011111 13346776
Q ss_pred CcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc--cceeeecccCCCCcC
Q 035933 238 YKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE--PFLNLIADCDPLTQI 315 (405)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 315 (405)
++...+++..+..... ..... ..+.+...+.+.+.+..|.+.. .++..... ...|..+...+.++|
T Consensus 195 ~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w 262 (765)
T PRK08255 195 DDTSTFIVETPEEVWR----------AAGLD-EMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERW 262 (765)
T ss_pred CCCcEEEEEcCHHHHH----------hcCCc-cCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCC
Confidence 6655544443221100 00011 1123233333344445554432 22222111 122444544456788
Q ss_pred cccc----EEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcC
Q 035933 316 YWDN----VVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLG 391 (405)
Q Consensus 316 ~~~~----v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~ 391 (405)
..+| ++|+|||||+++|+.|||+|+||+||..|+++|.... .++.++|+.|++.|++++..++..|+.+..++..
T Consensus 263 ~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~-~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~ 341 (765)
T PRK08255 263 VHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP-GDLPAALAAYEEERRVEVLRIQNAARNSTEWFEN 341 (765)
T ss_pred ccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeee
Confidence 8888 9999999999999999999999999999999998753 3689999999999999999999999998888775
Q ss_pred C
Q 035933 392 L 392 (405)
Q Consensus 392 ~ 392 (405)
.
T Consensus 342 ~ 342 (765)
T PRK08255 342 V 342 (765)
T ss_pred c
Confidence 4
No 51
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.97 E-value=2.4e-30 Score=234.63 Aligned_cols=289 Identities=20% Similarity=0.150 Sum_probs=174.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||||+++|+.|++.|++|+|+||.+.++. ..++..+.+.+...+...+.. .... .........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~---~~~~~~~~~~~~~~l~~~~~~--~~~~----~~~~~~~~~ 71 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY---KPCGGALSPRVLEELDLPLEL--IVNL----VRGARFFSP 71 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc---ccccCccCHhHHHHhcCCchh--hhhh----eeeEEEEcC
Confidence 6999999999999999999999999999999987643 344566777777666544320 1110 000011111
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
++.. . . . .......+.++|..+.+.|.+.+. .|+ +++++++.++..+++ .+++.+ .++. .++++|+||
T Consensus 72 ~~~~-~-~-~-~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~~~~~---~~~~-~~~~a~~vv 141 (295)
T TIGR02032 72 NGDS-V-E-I-PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RVVVIV---RGGE-GTVTAKIVI 141 (295)
T ss_pred CCcE-E-E-e-ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EEEEEE---cCcc-EEEEeCEEE
Confidence 1111 1 1 1 111234467899999999999885 577 999999999875443 444442 2322 248999999
Q ss_pred eecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEe----ecCCeEEEEEEeeCcce
Q 035933 166 AADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTD----LVPGTHTVLYELMYKRL 241 (405)
Q Consensus 166 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~ 241 (405)
+|||.+|.+|+.+......... ...++..+..+.... . .....+. ..++.+.+++|..++..
T Consensus 142 ~a~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~P~~~~~~ 207 (295)
T TIGR02032 142 GADGSRSIVAKKLGLRKEPREL-GVAARAEVEMPDEEV-----------D--EDFVEVYIDRGISPGGYGWVFPKGDGTA 207 (295)
T ss_pred ECCCcchHHHHhcCCCCCCcce-eeEEEEEEecCCccc-----------C--cceEEEEcCCCcCCCceEEEEeCCCCeE
Confidence 9999999999977433222122 223333444332110 0 0111111 12356788899888876
Q ss_pred eEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccccEE
Q 035933 242 NWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDNVV 321 (405)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 321 (405)
.+.+....+... ....+.++++. +.. +.+... .......+.+....+..++..+|++
T Consensus 208 ~v~~~~~~~~~~----------------~~~~~~~~~~~----~~~-~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~v~ 264 (295)
T TIGR02032 208 NVGVGSRSAEEG----------------EDLKKYLKDFL----ARR-PELKDA--ETVEVIGAPIPIGRPDDKTVRGNVL 264 (295)
T ss_pred EEeeeeccCCCC----------------CCHHHHHHHHH----HhC-cccccC--cEEeeeceeeccCCCCCccccCCEE
Confidence 666554332111 11122333322 221 211111 0111122333334455677789999
Q ss_pred EEccccccCCCCCchhhhhHHHHHHHHHHHH
Q 035933 322 LIGDAAHPITPHCARSTNMAIADAAVLGKCL 352 (405)
Q Consensus 322 lvGDAah~~~P~~G~G~~~al~da~~la~~l 352 (405)
++|||||+++|++|||+++||+||..+|++|
T Consensus 265 liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 265 LVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred EEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999875
No 52
>PRK10015 oxidoreductase; Provisional
Probab=99.97 E-value=2.1e-28 Score=230.97 Aligned_cols=347 Identities=17% Similarity=0.136 Sum_probs=189.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhcc--Ch-hhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLH--QP-DLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~--~~-~~~~~~~~~~~~~ 82 (405)
.++||+||||||||++||+.|+++|++|+|+||.+.++....+|.. ++.... +.+.. .. ..++.... ..
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~--i~~~~~---~~l~~~~~~~~~i~~~~~---~~ 75 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGR--LYAHTL---EAIIPGFAASAPVERKVT---RE 75 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCce--eecccH---HHHcccccccCCcccccc---ce
Confidence 4699999999999999999999999999999999887654333332 222222 22211 00 01111110 00
Q ss_pred ccceecCccceeeeecc-c---CCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 83 QNRAVDREKNICRVLAR-D---ENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~-~---~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
.....+........+.. . .....+.+.|..|+++|.+.+. .|+ ++.+++|.++..++ ..+... ..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v---~~~~~- 149 (429)
T PRK10015 76 KISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGV---QAGDD- 149 (429)
T ss_pred eEEEEeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEE---EeCCe-
Confidence 11111111101111111 1 1123577899999999999874 588 99999999987432 344322 12333
Q ss_pred eEEeeeEEEeecCCcccccccccCCCCCCcC-ceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEee-cCCe---EE
Q 035933 157 IDVVGDLLVAADGSRSSVRQTFLPDSKLRYT-GYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDL-VPGT---HT 231 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 231 (405)
+++||+||+|||.+|.+++.+......... ....+...+..+. ..+..........+..+++.- ..++ ..
T Consensus 150 -~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~----~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G 224 (429)
T PRK10015 150 -ILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTP----EQINDRFNITGEEGAAWLFAGSPSDGLMGGG 224 (429)
T ss_pred -EEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCH----HHhhHhhcCCCCCCeEEEecCccCCCCCCce
Confidence 489999999999999999987432222111 1222222222221 111000000011111222211 1111 23
Q ss_pred EEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc-cc-eeeec--
Q 035933 232 VLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE-PF-LNLIA-- 307 (405)
Q Consensus 232 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-- 307 (405)
|+|+. .+..+++..+...... .......++++++. .+|.+...+..... .+ .+.+.
T Consensus 225 ~~~~~-~d~v~vGv~~~~~~~~-----------------~~~~~~~~~l~~~~--~~p~~~~~~~~~~~~e~~~~~ip~g 284 (429)
T PRK10015 225 FLYTN-KDSISLGLVCGLGDIA-----------------HAQKSVPQMLEDFK--QHPAIRPLISGGKLLEYSAHMVPEG 284 (429)
T ss_pred EEEEc-CCcEEEEEEEehhhhc-----------------cCCCCHHHHHHHHh--hChHHHHHhcCCEEEEEeeEEcccC
Confidence 34432 2334443322211100 00111233344442 25666665543211 11 11111
Q ss_pred ccCCCCcCccccEEEEccccccCCC--CCchhhhhHHHHHHHHHHHHHhhC--CCcHHHHHHHHHhhcccc-hHHHHHHH
Q 035933 308 DCDPLTQIYWDNVVLIGDAAHPITP--HCARSTNMAIADAAVLGKCLERWG--PENLHSALEEHKSVRLPV-TNKQVLHS 382 (405)
Q Consensus 308 ~~~~~~~~~~~~v~lvGDAah~~~P--~~G~G~~~al~da~~la~~l~~~~--~~~~~~~l~~y~~~r~~~-~~~~~~~s 382 (405)
.....+..+.+++++|||||+.++| ++|+|++.||.+|..+|+.+.++. ++.....|+.|++..+.. +.+.....
T Consensus 285 g~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~ 364 (429)
T PRK10015 285 GLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHF 364 (429)
T ss_pred CcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHH
Confidence 1113456677999999999999985 699999999999999999997764 233567789999988865 55556667
Q ss_pred HHhhhhhcC
Q 035933 383 RRVGLIKLG 391 (405)
Q Consensus 383 ~~~~~~~~~ 391 (405)
+.+..+++.
T Consensus 365 ~~~~~~~~~ 373 (429)
T PRK10015 365 RKIPALMEN 373 (429)
T ss_pred hChHhhhcC
Confidence 776666654
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.96 E-value=1.2e-27 Score=226.10 Aligned_cols=346 Identities=16% Similarity=0.135 Sum_probs=187.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCC--ccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLP--LTIDQ 83 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~ 83 (405)
.++||+||||||||++||+.|+++|++|+|+||.+.++....+|.. +..... +.+.. +........ .....
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~--l~~~~~---e~l~~--~~~~~~~~~~~~~~~~ 76 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGR--LYAHSL---EHIIP--GFADSAPVERLITHEK 76 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccce--echhhH---HHHhh--hhhhcCcccceeeeee
Confidence 4699999999999999999999999999999999887654333322 222222 22211 010000000 00000
Q ss_pred cceecCccceeeee----cccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCcee
Q 035933 84 NRAVDREKNICRVL----ARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVII 157 (405)
Q Consensus 84 ~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~ 157 (405)
..+........... ........+.+.|..|+++|.+.+. .|+ ++.+++|.++..++ +.+.+. ..+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v---~~~g~~- 150 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGV---EADGDV- 150 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEE---EcCCcE-
Confidence 11111111010000 0111234567899999999999884 688 99999999987543 334322 234554
Q ss_pred EEeeeEEEeecCCcccccccccCCCCCCcCce-EEEEEEecCCCCCCchhhhhhhhccC-CCCCceeEee-cCCe---EE
Q 035933 158 DVVGDLLVAADGSRSSVRQTFLPDSKLRYTGY-CAWRGVFDFSENENSETIQGIRKAYP-ELGNGVHTDL-VPGT---HT 231 (405)
Q Consensus 158 ~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~---~~ 231 (405)
++||+||+|||.+|.+++.+........... ..+...+..+. ..+ ..+.... ..+..+++.- ...+ ..
T Consensus 151 -i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~----~~~-~~~~~~~~~~g~~~~~~g~~~~g~~ggG 224 (428)
T PRK10157 151 -IEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPK----SVI-EDRFQLQGNQGAACLFAGSPTDGLMGGG 224 (428)
T ss_pred -EECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCH----HHH-HHhhccCCCCCeEEEEEECCCCCCcCce
Confidence 8999999999999999998754322222221 12222222221 000 0000001 1111111111 1110 12
Q ss_pred EEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCc-cc-eeee--c
Q 035933 232 VLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKE-PF-LNLI--A 307 (405)
Q Consensus 232 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~--~ 307 (405)
|+|+ .....++.+.+..+... .......++++.+.. .|.+...+..... .+ .+.+ .
T Consensus 225 ~~~~-~~~~~svG~~~~~~~~~-----------------~~~~~~~~~l~~~~~--~p~v~~~~~~~~~~~~~~~~ip~~ 284 (428)
T PRK10157 225 FLYT-NENTLSLGLVCGLHHLH-----------------DAKKSVPQMLEDFKQ--HPAVAPLIAGGKLVEYSAHVVPEA 284 (428)
T ss_pred eEEE-cCCeEEEEEEEehHHhc-----------------ccCCCHHHHHHHHHh--CchHHHHhCCCeEHHHHhhHhhcC
Confidence 3333 22233333332221111 001122233333321 3444444322110 00 0001 1
Q ss_pred ccCCCCcCccccEEEEccccccCCC--CCchhhhhHHHHHHHHHHHHHhhC--CCcHHHHHHHHHhhcccchHHHHHHHH
Q 035933 308 DCDPLTQIYWDNVVLIGDAAHPITP--HCARSTNMAIADAAVLGKCLERWG--PENLHSALEEHKSVRLPVTNKQVLHSR 383 (405)
Q Consensus 308 ~~~~~~~~~~~~v~lvGDAah~~~P--~~G~G~~~al~da~~la~~l~~~~--~~~~~~~l~~y~~~r~~~~~~~~~~s~ 383 (405)
.....+..+.+++++|||||++++| ++|+|++.||.+|..+|+.+.+.. ++...+.|..|++..+..+-+.....+
T Consensus 285 g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~~ 364 (428)
T PRK10157 285 GINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQ 364 (428)
T ss_pred CcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHHh
Confidence 1123345567999999999999998 599999999999999999997763 334567899999988777766667776
Q ss_pred Hhhhhhc
Q 035933 384 RVGLIKL 390 (405)
Q Consensus 384 ~~~~~~~ 390 (405)
.+..+++
T Consensus 365 ~~~~~~~ 371 (428)
T PRK10157 365 KLPAFLD 371 (428)
T ss_pred ccHHHhc
Confidence 6666665
No 54
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.96 E-value=4.4e-27 Score=221.24 Aligned_cols=332 Identities=17% Similarity=0.076 Sum_probs=186.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccceec
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAVD 88 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (405)
||+||||||||+++|+.|++.|++|+|+|+.+.... ...+.++... ++++++ .+.+. ..... ......
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~----~~~~~~~~~~---~~~~~~-~~~~~-~~~~~---~~~~~~ 68 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG----NHTYGVWDDD---LSDLGL-ADCVE-HVWPD---VYEYRF 68 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC----CccccccHhh---hhhhch-hhHHh-hcCCC---ceEEec
Confidence 799999999999999999999999999999875421 1123333221 223322 11111 00000 000000
Q ss_pred CccceeeeecccCCcccccccHHHHHHHHHhcCC-CceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEee
Q 035933 89 REKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAA 167 (405)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~A 167 (405)
... ......++..++|..|.+.|.+.+. .++.++..++.+++.+ ++..+.|+ +++|.. ++|++||+|
T Consensus 69 ~~~------~~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~-~~~~~~v~---~~~g~~--~~a~~VI~A 136 (388)
T TIGR01790 69 PKQ------PRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEAD-GVALSTVY---CAGGQR--IQARLVIDA 136 (388)
T ss_pred CCc------chhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEec-CCceeEEE---eCCCCE--EEeCEEEEC
Confidence 000 0011244556899999999999874 4663356788888743 24455565 456654 899999999
Q ss_pred cCCcccccccccCCCCCCcCceEEEEEEe-cCCCCCCchhhhhhhhccCCCCCceeEeec----------C--CeEEEEE
Q 035933 168 DGSRSSVRQTFLPDSKLRYTGYCAWRGVF-DFSENENSETIQGIRKAYPELGNGVHTDLV----------P--GTHTVLY 234 (405)
Q Consensus 168 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~ 234 (405)
||.+|.+++.... ...++....|.. ..+...... .....+.+. . ..+.+.+
T Consensus 137 ~G~~s~~~~~~~~----~~~~~q~~~G~~~~~~~~~~~~------------~~~~~~d~~~~~~~~~~~~~~~~~f~~~l 200 (388)
T TIGR01790 137 RGFGPLVQYVRFP----LNVGFQVAYGVEARLSRPPHGP------------SSMVIMDARVDQLAAPELKGYRPTFLYAM 200 (388)
T ss_pred CCCchhcccccCC----CCceEEEEEEEEEEEcCCCCCC------------CceEEEeccccccccccccCCCCceEEEe
Confidence 9999977644321 111222222322 222111000 011111110 0 1256677
Q ss_pred EeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCc
Q 035933 235 ELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQ 314 (405)
Q Consensus 235 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (405)
|...+...+....... .. ..+.+.+++.+.+..+...-...+++.. .....++ ..+. .
T Consensus 201 P~~~~~~~v~~~~~~~-~~----------------~~~~~~~~~~l~~~~~~~g~~~~~i~~~--~~~~iP~--~~~~-~ 258 (388)
T TIGR01790 201 PLGSTRVFIEETSLAD-RP----------------ALPRDRLRQRILARLNAQGWQIKTIEEE--EWGALPV--GLPG-P 258 (388)
T ss_pred ecCCCeEEEEeccccC-CC----------------CCCHHHHHHHHHHHHHHcCCeeeEEEee--eeEEEec--ccCC-C
Confidence 8766654332111000 00 1122233332222222111111111111 0001111 1111 2
Q ss_pred CccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 315 IYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 315 ~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
...+|+++||||||.++|++|+|++.|+++|..||+.|.++...+.+.+++.|++..+++..+..........++...++
T Consensus 259 ~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (388)
T TIGR01790 259 FLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTERRRQRYFRLLGRMLFLALEP 338 (388)
T ss_pred ccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHcCCH
Confidence 36689999999999999999999999999999999999887545678999999988888888766677777777766666
Q ss_pred CCccccee
Q 035933 395 PDRGLLIQ 402 (405)
Q Consensus 395 ~~~~~~~~ 402 (405)
+...++++
T Consensus 339 ~~~~~~f~ 346 (388)
T TIGR01790 339 EERRRFFQ 346 (388)
T ss_pred HHHHHHHH
Confidence 66555543
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.94 E-value=5.6e-25 Score=191.17 Aligned_cols=357 Identities=16% Similarity=0.120 Sum_probs=234.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
...||+|||||.+|.++|+.|+|.|.+|.|+||.-...++ =-|..++|.+...|.++|+. +.++...........-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdR---ivGEllQPGG~~~L~~LGl~-Dcve~IDAQ~v~Gy~i 119 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDR---IVGELLQPGGYLALSKLGLE-DCVEGIDAQRVTGYAI 119 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchH---HHHHhcCcchhHHHHHhCHH-HHhhcccceEeeeeEE
Confidence 3589999999999999999999999999999998653221 12788999999999999984 4555443322111122
Q ss_pred eecCcc-ceeeee-cccCCcccccccHHHHHHHHHhcCC--CceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 86 AVDREK-NICRVL-ARDENFNYLQAHWTDLHGLIYNTLP--VEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 86 ~~~~~~-~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
+.+++. ...... ..+.+......+..+|.+-|++.+. .++-..+..|.++.+ +++...-|+++ .+.|+..+..|
T Consensus 120 fk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLle-e~gvvkGV~yk-~k~gee~~~~A 197 (509)
T KOG1298|consen 120 FKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLE-EEGVVKGVTYK-NKEGEEVEAFA 197 (509)
T ss_pred EeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHh-ccCeEEeEEEe-cCCCceEEEec
Confidence 223332 122211 1122233455677899999999773 577334445666653 22222234444 45555567889
Q ss_pred eEEEeecCCcccccccccCCCCCCcCceEEEEEEe-cCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcc
Q 035933 162 DLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVF-DFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKR 240 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (405)
-+.|+|||..|.+||.+-.+.-.+-. ..+-|.+ ...... ..+..+..+++...+.+||++..+
T Consensus 198 pLTvVCDGcfSnlRrsL~~~~v~~V~--S~fVG~vl~N~~l~--------------~p~hghvIL~~pspil~Y~ISStE 261 (509)
T KOG1298|consen 198 PLTVVCDGCFSNLRRSLCDPKVEEVP--SYFVGLVLKNCRLP--------------APNHGHVILSKPSPILVYQISSTE 261 (509)
T ss_pred ceEEEecchhHHHHHHhcCCcccccc--hheeeeeecCCCCC--------------CCCcceEEecCCCcEEEEEecchh
Confidence 99999999999999998542222111 1111221 121111 123445666777888999999999
Q ss_pred eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcC--ccceeeecccCCCCcCccc
Q 035933 241 LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETK--EPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 318 (405)
....+-++.+.-+ ...+.+....+.+.+.++.++.+++.....- ..+........|.......
T Consensus 262 vRcl~~v~g~~~P---------------si~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~ 326 (509)
T KOG1298|consen 262 VRCLVDVPGQKLP---------------SIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKK 326 (509)
T ss_pred eEEEEecCcccCC---------------cccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCC
Confidence 9888877765544 0122333444455555666777766654432 2233223334444444558
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
+++++|||...=+|++|.||.-|+.|...|-+.|.-.. .+.+.+.++.|...|++....+.-.|...+.++....+
T Consensus 327 G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~d 406 (509)
T KOG1298|consen 327 GVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTD 406 (509)
T ss_pred ceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCch
Confidence 99999999999999999999999999999999997642 23456788899999999999999999999999887666
Q ss_pred CCccc
Q 035933 395 PDRGL 399 (405)
Q Consensus 395 ~~~~~ 399 (405)
+.+..
T Consensus 407 ea~~~ 411 (509)
T KOG1298|consen 407 EARKA 411 (509)
T ss_pred HHHHH
Confidence 55443
No 56
>PLN02697 lycopene epsilon cyclase
Probab=99.93 E-value=1.4e-24 Score=206.96 Aligned_cols=343 Identities=13% Similarity=0.051 Sum_probs=192.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
.+||+||||||||+++|+.|++.|++|+|+|+.... ...+.++. ..++.+++. +.+.. ..+.. ....
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~------~~n~GvW~---~~l~~lgl~-~~i~~-~w~~~--~v~~ 174 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF------TNNYGVWE---DEFKDLGLE-DCIEH-VWRDT--IVYL 174 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC------CCccccch---hHHHhcCcH-HHHHh-hcCCc--EEEe
Confidence 489999999999999999999999999999986432 11222332 235555542 12211 11110 1111
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCC-CceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.++.. . ..+.++..++|..|.+.|.+++. .|+.+++++|.++..+++...+ +. ..+|.. +.|++||
T Consensus 175 ~~~~~-----~--~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~v-v~---~~dG~~--i~A~lVI 241 (529)
T PLN02697 175 DDDKP-----I--MIGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRL-VA---CEDGRV--IPCRLAT 241 (529)
T ss_pred cCCce-----e--eccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEE-EE---EcCCcE--EECCEEE
Confidence 11100 0 01233446899999999999874 5773378899998754333222 22 346654 8999999
Q ss_pred eecCCcccccccccC-CCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCC--CCceeEeecCCeEEEEEEeeCccee
Q 035933 166 AADGSRSSVRQTFLP-DSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPEL--GNGVHTDLVPGTHTVLYELMYKRLN 242 (405)
Q Consensus 166 ~AdG~~S~vr~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~ 242 (405)
+|||.+|. +.+.. ...+.......+.-.+.++........ ....++... ............+++++|.+.++..
T Consensus 242 ~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~ 318 (529)
T PLN02697 242 VASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVF 318 (529)
T ss_pred ECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeecCCCeEE
Confidence 99999993 22211 112222233333333334322111111 011000000 0000000111236677777777665
Q ss_pred EEEE-E-ecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccccE
Q 035933 243 WIWY-I-TQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDNV 320 (405)
Q Consensus 243 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 320 (405)
+--. . ..+. .+.+.+++.+....+...-...+++..... .+....+.+.. .+++
T Consensus 319 VE~T~l~~~~~-------------------l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g----~iPm~g~~~~~-~~~v 374 (529)
T PLN02697 319 FEETCLASKDA-------------------MPFDLLKKRLMSRLETMGIRILKTYEEEWS----YIPVGGSLPNT-EQKN 374 (529)
T ss_pred EEEeeeccCCC-------------------CCHHHHHHHHHHHHHhCCCCcceEEEEEee----eecCCCCCccc-CCCe
Confidence 5222 1 1111 112223222222222111011111111111 11112243443 5899
Q ss_pred EEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhCC-----------CcHHHHHHHHHhhcccchHHHHHHHHHhhhhh
Q 035933 321 VLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWGP-----------ENLHSALEEHKSVRLPVTNKQVLHSRRVGLIK 389 (405)
Q Consensus 321 ~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~~-----------~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~ 389 (405)
+++||||+.++|.+|.|+..++.+|..+|+.|.+..+ +....+++.|++.+.....+.........+++
T Consensus 375 l~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l 454 (529)
T PLN02697 375 LAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALI 454 (529)
T ss_pred eEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987741 24578899999999998888888888888888
Q ss_pred cCCCCCCccccee
Q 035933 390 LGLPLPDRGLLIQ 402 (405)
Q Consensus 390 ~~~~~~~~~~~~~ 402 (405)
...+++.+.++++
T Consensus 455 ~~l~~~~~~~ff~ 467 (529)
T PLN02697 455 LQLDTEGIRTFFV 467 (529)
T ss_pred HCCCHHHHHHHHH
Confidence 8888887665553
No 57
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.93 E-value=8.9e-25 Score=191.89 Aligned_cols=355 Identities=18% Similarity=0.209 Sum_probs=216.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc----CCcEEEEccCCCCCCC--C----CCCcceeeCccHHHHHHHhccChhhhhccc
Q 035933 7 KPKAIIVGGSIAGISCAKALILA----GWDVVVIEKTRGPPTG--N----PTGAGIALHLLSQKIVKSWLHQPDLLHNIT 76 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~----g~~v~i~E~~~~~~~~--~----~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 76 (405)
.+||+||||||+|+++|..|... .++|.|+|....+... . ...+...+++.+...++.++.++.......
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 68999999999999999999963 6799999988443221 1 123355788899999999877543333333
Q ss_pred CCccccccceecCccceeeeecccC-C-cccccccHHHHHHHHHh-cC---CCce-EEecceEEEEEEe----c-CCCe-
Q 035933 77 LPLTIDQNRAVDREKNICRVLARDE-N-FNYLQAHWTDLHGLIYN-TL---PVEI-VFWGHLYLTFCIS----H-DKST- 143 (405)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~r~~l~~~L~~-~~---~~~~-i~~~~~v~~i~~~----~-~~~~- 143 (405)
.+. .....+++-....-.+..+. . ...+.++...++..|.. .+ ...+ +....++.++... . ++..
T Consensus 116 ~~~--~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~ 193 (481)
T KOG3855|consen 116 QKF--SRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMW 193 (481)
T ss_pred ccc--cceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcce
Confidence 332 23445544431111111111 1 12345666677777764 22 3467 8888888887653 1 2222
Q ss_pred EEEEEeecCCCceeEEeeeEEEeecCCcccccccccCCCC-CCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCcee
Q 035933 144 VNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTFLPDSK-LRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVH 222 (405)
Q Consensus 144 v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (405)
..++ +.+|.. +..|++|+|||++|.+|+....+.. -+|...... +....... .......+
T Consensus 194 ~~i~---l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havV-Atl~l~~~-------------~~~~~~Aw 254 (481)
T KOG3855|consen 194 FHIT---LTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQHAVV-ATLKLEEE-------------AILNGVAW 254 (481)
T ss_pred EEEE---eccCce--eeeceeeccccccchhhhhcCCCcccccccceeee-EEEEeccc-------------ccccchhH
Confidence 3444 667775 8999999999999999998642221 122221111 11111110 11123334
Q ss_pred EeecCCeEEEEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcCh--------HH--H
Q 035933 223 TDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAP--------EH--A 292 (405)
Q Consensus 223 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~ 292 (405)
+.|.|.+.+...|++++..++.|........ .-+..+++.+-.+++..+..-.+ .. .
T Consensus 255 QRFlP~GpiAllpl~d~~s~LvWSts~~~a~-------------~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~ 321 (481)
T KOG3855|consen 255 QRFLPTGPIALLPLSDTLSSLVWSTSPENAS-------------ILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALN 321 (481)
T ss_pred HhcCCCCceeecccccccccceeecCHHHHH-------------HHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhc
Confidence 5667778888899999999999988754332 11122222222222221110000 00 0
Q ss_pred -------HHHHhcC---c----cce----eeecccCC-----CCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHH
Q 035933 293 -------TVIKETK---E----PFL----NLIADCDP-----LTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLG 349 (405)
Q Consensus 293 -------~~~~~~~---~----~~~----~~~~~~~~-----~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la 349 (405)
.++.... . +.. .......| ...++.+|+.|+|||||-++|++|||.|+++.|...|.
T Consensus 322 ~~~~~~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~ 401 (481)
T KOG3855|consen 322 GRAQLSESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILV 401 (481)
T ss_pred chhhccHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHH
Confidence 0111000 0 000 00011222 23566799999999999999999999999999999999
Q ss_pred HHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCCC
Q 035933 350 KCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPLP 395 (405)
Q Consensus 350 ~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~~ 395 (405)
+.+.+.. +-.....|+.|+++|.+....+.-....+.+++....++
T Consensus 402 ~sL~~ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~ 451 (481)
T KOG3855|consen 402 DSLSEAIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP 451 (481)
T ss_pred HHHHHHHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCc
Confidence 9997763 445678899999999999999988999999988876554
No 58
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.93 E-value=6.8e-24 Score=200.72 Aligned_cols=322 Identities=15% Similarity=0.099 Sum_probs=180.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC---CcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhh-hhcccCCcccc-c
Q 035933 9 KAIIVGGSIAGISCAKALILAG---WDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDL-LHNITLPLTID-Q 83 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g---~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~ 83 (405)
||+|||||+||.++|..|++.+ ++|+|||+...++ .+-|.++.|.....++.+|+.+.. +.......+.. .
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~----~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~ 76 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR----IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIR 76 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-------SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC----CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEE
Confidence 7999999999999999999998 8999999998863 566888889888899999986542 33332222111 1
Q ss_pred cceecCc-cceeeeecc--------------------------------------------cC-----CcccccccHHHH
Q 035933 84 NRAVDRE-KNICRVLAR--------------------------------------------DE-----NFNYLQAHWTDL 113 (405)
Q Consensus 84 ~~~~~~~-~~~~~~~~~--------------------------------------------~~-----~~~~~~~~r~~l 113 (405)
+..|... ......+.. .. ....+.++|..|
T Consensus 77 f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~f 156 (454)
T PF04820_consen 77 FVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKF 156 (454)
T ss_dssp EESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHH
T ss_pred eeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHH
Confidence 1111111 101111100 00 112367999999
Q ss_pred HHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccccccccCCCCCCcC-ce-
Q 035933 114 HGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTFLPDSKLRYT-GY- 189 (405)
Q Consensus 114 ~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l~~~~~~~~~-~~- 189 (405)
+++|.+.+ +.|+ +..+ +|+++..++++....|+ +.+|.+ ++||++|+|+|..|.+.++.+...-.... ..
T Consensus 157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~---~~~g~~--i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~ 230 (454)
T PF04820_consen 157 DQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVR---LDDGRT--IEADFFIDASGRRSLLARKALKVGFRDWSDWLP 230 (454)
T ss_dssp HHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEE---ETTSEE--EEESEEEE-SGGG-CCCCCCT-EEEEEETTTCE
T ss_pred HHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEE---ECCCCE--EEEeEEEECCCccchhhHhhhcCCCcccccccc
Confidence 99999987 4688 6655 58888876644444555 567765 99999999999999987774211101111 11
Q ss_pred --EEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcceeEEEEEecccccccccccccccCCcc
Q 035933 190 --CAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSA 267 (405)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (405)
.++...+.... ...........+.++.|.+|+.++..+ ++.+......
T Consensus 231 ~d~av~~~~~~~~---------------~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~s-------------- 280 (454)
T PF04820_consen 231 NDRAVAVQVPNED---------------PPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFIS-------------- 280 (454)
T ss_dssp EEEEEEEEEE-SS---------------CTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTSH--------------
T ss_pred ccEEEEEecCcCC---------------CCCCceeEEecCCceEEEccCCCcceE-EEEeccccCC--------------
Confidence 11111111111 001112233456788899999887666 3333332111
Q ss_pred ccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHH
Q 035933 268 TMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAV 347 (405)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~ 347 (405)
+.+..+++.+.+ ... ....+.. . ........+...+|+++|||||++++|+.++|+.+|+..+..
T Consensus 281 ----~~~A~~~l~~~l----~~~----~~~~~~~-i--~~~~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~ 345 (454)
T PF04820_consen 281 ----DDEAEAELLAYL----GGS----PEAEPRH-I--RFRSGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEA 345 (454)
T ss_dssp ----HHHHHHHHHHHH----TCH----CTTSCEE-E--E-S-EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhc----chh----hhcchhh-h--cccccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHH
Confidence 122232322221 111 0011110 0 010111334455899999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHhhcccchHHHHHHHHHhhh
Q 035933 348 LGKCLERWGPENLHSALEEHKSVRLPVTNKQVLHSRRVGL 387 (405)
Q Consensus 348 la~~l~~~~~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~ 387 (405)
+++.|.... ..+.+++.|++..+.......+.-.....
T Consensus 346 l~~~l~~~~--~~~~~~~~Yn~~~~~~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 346 LAEALPDDD--FSPAALDRYNRRMRREYERIRDFISLHYQ 383 (454)
T ss_dssp HHHTHHCTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999987653 23778999999888877776555444433
No 59
>PLN02463 lycopene beta cyclase
Probab=99.92 E-value=2.1e-23 Score=196.07 Aligned_cols=297 Identities=17% Similarity=0.128 Sum_probs=159.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
.+||+||||||||+++|+.|+++|++|+|+|+.+.... ..++.++ .+.++++++. +.+.. ..+.. ....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~----p~~~g~w---~~~l~~lgl~-~~l~~-~w~~~--~v~~ 96 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW----PNNYGVW---VDEFEALGLL-DCLDT-TWPGA--VVYI 96 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh----ccccchH---HHHHHHCCcH-HHHHh-hCCCc--EEEE
Confidence 58999999999999999999999999999999764321 1111111 2345555542 22221 11110 0111
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCC-CceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.+... .....++..++|..|.+.|.+++. .|+-+...+|.+++.. +..+.|+ +++|.+ ++||+||
T Consensus 97 ~~~~~-------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~--~~~~~V~---~~dG~~--i~A~lVI 162 (447)
T PLN02463 97 DDGKK-------KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHE--ESKSLVV---CDDGVK--IQASLVL 162 (447)
T ss_pred eCCCC-------ccccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEc--CCeEEEE---ECCCCE--EEcCEEE
Confidence 11110 012335566899999999999875 5672236789998854 3445565 567765 8999999
Q ss_pred eecCCcccccccccCCCCCCcCceEEEEEEe-cCCCCCCch---hhhhhhhccCCCCCceeEee---cCCeEEEEEEeeC
Q 035933 166 AADGSRSSVRQTFLPDSKLRYTGYCAWRGVF-DFSENENSE---TIQGIRKAYPELGNGVHTDL---VPGTHTVLYELMY 238 (405)
Q Consensus 166 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~ 238 (405)
+|||.+|.+++.- .+...++....+.. ..+...... .+..++. .+.+....... .-..+++.+|.++
T Consensus 163 ~AdG~~s~l~~~~----~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~--~~~~~~~~~~~~~~~~p~FlY~~P~~~ 236 (447)
T PLN02463 163 DATGFSRCLVQYD----KPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRD--SHLGNNPELRARNSKLPTFLYAMPFSS 236 (447)
T ss_pred ECcCCCcCccCCC----CCCCccceeeeeEEeecCCCCcccccchhhhcCh--hhccccchhhhccCCCCceEEEEecCC
Confidence 9999999886532 22223443333333 332211110 0001110 00000000000 0023567777777
Q ss_pred cceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccc
Q 035933 239 KRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (405)
++..+-...-..... .+.+.+++.+.+..+.+.-...++...... .+....+.+ ...+
T Consensus 237 ~~~~vEeT~l~s~~~-----------------~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~----~IPmg~~~~-~~~~ 294 (447)
T PLN02463 237 NRIFLEETSLVARPG-----------------LPMDDIQERMVARLRHLGIKVKSVEEDEKC----VIPMGGPLP-VIPQ 294 (447)
T ss_pred CeEEEEeeeeecCCC-----------------CCHHHHHHHHHHHHHHCCCCcceeeeeeee----EeeCCCCCC-CCCC
Confidence 764432221111010 112222222222212111111111111111 111122222 2357
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG 356 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~ 356 (405)
+++++||||+.++|.+|.|+..++..|..+|+.+.+..
T Consensus 295 ~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~ 332 (447)
T PLN02463 295 RVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYL 332 (447)
T ss_pred CEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998774
No 60
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.91 E-value=1.6e-22 Score=187.05 Aligned_cols=294 Identities=16% Similarity=0.119 Sum_probs=157.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCCCCCCCCCcceeeCccHHH-----HHHHhccChhhhhcccCCccc
Q 035933 9 KAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGPPTGNPTGAGIALHLLSQK-----IVKSWLHQPDLLHNITLPLTI 81 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 81 (405)
||+|||||+||+++|+.|++. |++|+|+|+.+.... ...+.++..... .++.+ .....+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~----~~tw~~~~~~~~~~~~~~~~~~-------v~~~W~--- 66 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG----NHTWSFFDSDLSDAQHAWLADL-------VQTDWP--- 66 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC----cccceecccccchhhhhhhhhh-------heEeCC---
Confidence 799999999999999999987 999999999875321 112222211110 11110 000000
Q ss_pred cccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 82 DQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
......+ ......+.++..+.|.+|.+.|.+.+..+ ++++.+|.++. ++ .|++ .+|++ ++|
T Consensus 67 -~~~v~~~------~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~--~~--~v~l-----~dg~~--~~A 127 (370)
T TIGR01789 67 -GYEVRFP------KYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLD--AD--GVDL-----APGTR--INA 127 (370)
T ss_pred -CCEEECc------chhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEe--CC--EEEE-----CCCCE--EEe
Confidence 0111111 01111235678899999999999888656 66699998883 33 3543 37775 899
Q ss_pred eEEEeecCCcccccccccCCCCCCcCceEEEEEEec-CCCCCCchhhhhhhhccCCCCCceeEee----cCCe-EEEEEE
Q 035933 162 DLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFD-FSENENSETIQGIRKAYPELGNGVHTDL----VPGT-HTVLYE 235 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~p 235 (405)
|+||+|+|.+|.-... .++..+.|... .+..... +....|.+ ..+. ++...|
T Consensus 128 ~~VI~A~G~~s~~~~~---------~~~Q~f~G~~~r~~~p~~~-------------~~~~lMD~~~~q~~g~~F~Y~lP 185 (370)
T TIGR01789 128 RSVIDCRGFKPSAHLK---------GGFQVFLGREMRLQEPHGL-------------ENPIIMDATVDQLAGYRFVYVLP 185 (370)
T ss_pred eEEEECCCCCCCcccc---------ceeeEEEEEEEEEcCCCCC-------------CccEEEeeeccCCCCceEEEECc
Confidence 9999999999752211 24444333332 1111100 11112211 1222 223356
Q ss_pred eeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCC-c
Q 035933 236 LMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLT-Q 314 (405)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 314 (405)
.+.++..|-...-.+.. ..+.+.++..+........-...+++......+ ++....+.. .
T Consensus 186 ~~~~~~lvE~T~~s~~~-----------------~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~i--Pm~~~~~~~~~ 246 (370)
T TIGR01789 186 LGSHDLLIEDTYYADDP-----------------LLDRNALSQRIDQYARANGWQNGTPVRHEQGVL--PVLLGGDFSAY 246 (370)
T ss_pred CCCCeEEEEEEeccCCC-----------------CCCHHHHHHHHHHHHHHhCCCceEEEEeeeeEE--eeecCCCcccc
Confidence 66666554322111111 112222222222211111111111111111111 110001111 1
Q ss_pred -CccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHH-hhCCCcHHHHHHHHHhhcccchHHH
Q 035933 315 -IYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLE-RWGPENLHSALEEHKSVRLPVTNKQ 378 (405)
Q Consensus 315 -~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~-~~~~~~~~~~l~~y~~~r~~~~~~~ 378 (405)
...++++++|||||.++|.+|+|++.|+++|..|++++. +. ....+++..|...|+.+....
T Consensus 247 ~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 310 (370)
T TIGR01789 247 QDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLSS--EQLAAFIDSRARRHWSKTGYY 310 (370)
T ss_pred cccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcCc--cchhhhhhHHHHHHHHHhHHH
Confidence 124569999999999999999999999999999999996 32 245566788888877766643
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.87 E-value=2.4e-20 Score=173.42 Aligned_cols=280 Identities=16% Similarity=0.172 Sum_probs=155.7
Q ss_pred cEEEEcCCHHHHHHHHHH--HHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 9 KAIIVGGSIAGISCAKAL--ILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L--~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
||+||||||||+++|+.| ++.|.+|+|+|+++..... ..+.+..+......++.+ .....+ ....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~--~~~tW~~~~~~~~~~~~~-------v~~~w~----~~~v 67 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWP--NDRTWCFWEKDLGPLDSL-------VSHRWS----GWRV 67 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcccccc--CCcccccccccccchHHH-------HheecC----ceEE
Confidence 899999999999999999 7789999999998775221 112333332222212221 111110 1111
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-ceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-EIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
...... ... ...++..++|..|.+.|.+.+.. ++++++.+|.+|+.+++ .+.|. +++|.. ++|++||
T Consensus 68 ~~~~~~--~~~---~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~--~~~v~---~~~g~~--i~a~~Vv 135 (374)
T PF05834_consen 68 YFPDGS--RIL---IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGD--GVLVV---LADGRT--IRARVVV 135 (374)
T ss_pred EeCCCc--eEE---cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCc--eEEEE---ECCCCE--EEeeEEE
Confidence 111110 011 11566789999999999998874 45888999999985433 45554 668875 9999999
Q ss_pred eecCCcccccccccCCCCCCcCceEEEEEEe-cCCCCCCchhhhhhhhccCCCCCceeEee--c----CCeEEEEEEeeC
Q 035933 166 AADGSRSSVRQTFLPDSKLRYTGYCAWRGVF-DFSENENSETIQGIRKAYPELGNGVHTDL--V----PGTHTVLYELMY 238 (405)
Q Consensus 166 ~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~p~~~ 238 (405)
+|+|..+...+.. ++..+.|.. ..+... ++. .....+++ . ...+++++|.+.
T Consensus 136 Da~g~~~~~~~~~---------~~Q~f~G~~v~~~~~~-----------f~~-~~~~lMD~r~~~~~~~~~F~Y~lP~~~ 194 (374)
T PF05834_consen 136 DARGPSSPKARPL---------GLQHFYGWEVETDEPV-----------FDP-DTATLMDFRVPQSADGPSFLYVLPFSE 194 (374)
T ss_pred ECCCccccccccc---------ccceeEEEEEeccCCC-----------CCC-CceEEEEecccCCCCCceEEEEEEcCC
Confidence 9999776622211 112222222 222110 000 11112221 1 124556677777
Q ss_pred cceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhcCccceeeecccCCCCcCccc
Q 035933 239 KRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKETKEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (405)
++..+-..+-.+... .+.+.+++.+.+..+...-...+++..+...++ +. ..+.......
T Consensus 195 ~~alvE~T~fs~~~~-----------------~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IP--m~-~~~~~~~~~~ 254 (374)
T PF05834_consen 195 DRALVEETSFSPRPA-----------------LPEEELKARLRRYLERLGIDDYEILEEERGVIP--MT-TGGFPPRFGQ 254 (374)
T ss_pred CeEEEEEEEEcCCCC-----------------CCHHHHHHHHHHHHHHcCCCceeEEEeecceee--cc-cCCCccccCC
Confidence 766554333222221 112222222121111111112222222221111 10 1222333457
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHh
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLER 354 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~ 354 (405)
+++.+|+|++.++|.+|.++..+++.|..+|+.+.+
T Consensus 255 ~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 255 RVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred CeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999986
No 62
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.76 E-value=8.5e-17 Score=137.76 Aligned_cols=203 Identities=17% Similarity=0.157 Sum_probs=139.8
Q ss_pred eeEEEeecCCcccccccccCCCCCCcCceEEEEEEecCCCCCCchhhhhhhhccCCCCCceeEeecCCeEEEEEEeeCcc
Q 035933 161 GDLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGVFDFSENENSETIQGIRKAYPELGNGVHTDLVPGTHTVLYELMYKR 240 (405)
Q Consensus 161 ~d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 240 (405)
|.++|+|||..|.+||.+.. ........+.|..-..-.. | .....+..+++...+.+|+++.++
T Consensus 2 A~LtivaDG~~S~fRk~l~~---~~~~v~S~fvGl~l~~~~l------------p-~~~~ghvil~~~~pil~YqI~~~e 65 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSD---NKPQVRSYFVGLILKDAPL------------P-KPNHGHVILGKPGPILLYQISSNE 65 (276)
T ss_pred CCEEEEecCCchHHHHhhcC---CCCceeeeEEEEEEcCCCC------------C-CCCceEEEEcCCCcEEEEEcCCCc
Confidence 68999999999999999862 2233333444543322111 1 123446667778899999999999
Q ss_pred eeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChHHHHHHHhc--CccceeeecccCCCCcCccc
Q 035933 241 LNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPEHATVIKET--KEPFLNLIADCDPLTQIYWD 318 (405)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 318 (405)
..+.+-++.+..+ ...+.+..+.+.+.+.+..++.+++..... ...++.......|......+
T Consensus 66 tR~Lvdvp~~k~P---------------~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~ 130 (276)
T PF08491_consen 66 TRVLVDVPGPKLP---------------SVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKP 130 (276)
T ss_pred eEEEEEeCCCccC---------------CccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCC
Confidence 9988877765333 012234445555555666666666544322 11222222223333333448
Q ss_pred cEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC----CCcHHHHHHHHHhhcccchHHHHHHHHHhhhhhcCCCC
Q 035933 319 NVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG----PENLHSALEEHKSVRLPVTNKQVLHSRRVGLIKLGLPL 394 (405)
Q Consensus 319 ~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~----~~~~~~~l~~y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 394 (405)
+++++|||++..+|++|+||+.|+.|+..|++.|.... .+...+++++|..+|++...-+.-.|..+..++...++
T Consensus 131 G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~ 210 (276)
T PF08491_consen 131 GVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDD 210 (276)
T ss_pred CEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999998762 22367899999999999999999999999888886543
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.61 E-value=9.8e-15 Score=127.84 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=92.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcce-----eeCccHHHHHHHhccChhhhhcccCCcc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGI-----ALHLLSQKIVKSWLHQPDLLHNITLPLT 80 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (405)
.++||+||||||||+++|+.|++.|++|+|+||+..+.... .+.+. .+.......|++++. +..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~-~~gg~~~~~~~v~~~~~~~l~~~gv----------~~~ 92 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM-WGGGMLFNKIVVQEEADEILDEFGI----------RYK 92 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccCccccccccchHHHHHHHHHCCC----------Cce
Confidence 35899999999999999999999999999999998764321 12221 122222333333332 110
Q ss_pred ccccceecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeec---C---
Q 035933 81 IDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNL---R--- 152 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~---~--- 152 (405)
. .....+.+++..+...|.+.+ ..|+ ++++++|.++..++++...-+..... .
T Consensus 93 ~-------------------~~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~ 153 (257)
T PRK04176 93 E-------------------VEDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL 153 (257)
T ss_pred e-------------------ecCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence 0 001123467788888888877 4688 99999999987644422211211100 1
Q ss_pred CCceeEEeeeEEEeecCCcccccccc
Q 035933 153 TDVIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 153 ~g~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
..+...++|++||+|+|.+|.+.+.+
T Consensus 154 ~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 154 HVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred CCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 11344699999999999999998876
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.59 E-value=2.8e-14 Score=124.53 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=91.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCccee-----eCccHHHHHHHhccChhhhhcccCCcc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIA-----LHLLSQKIVKSWLHQPDLLHNITLPLT 80 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (405)
..+||+||||||||+++|+.|+++|++|+|+||+..+.... .+.+.. +.......++.++. +..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~-~~gg~~~~~~~~~~~~~~~l~~~gi----------~~~ 88 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS-WGGGMLFSKIVVEKPAHEILDEFGI----------RYE 88 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc-cCCCcceecccccchHHHHHHHCCC----------Cee
Confidence 35899999999999999999999999999999998764321 111111 11122222222221 100
Q ss_pred ccccceecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEE-EEEeecC----C
Q 035933 81 IDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVN-VKAKNLR----T 153 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~-v~~~~~~----~ 153 (405)
..+..++..++..+.+.|.+++ +.|+ +++++.+.++..+++...+. |.. +.. +
T Consensus 89 -------------------~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~-~~~~v~~~ 148 (254)
T TIGR00292 89 -------------------DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVI-NWSAIELA 148 (254)
T ss_pred -------------------eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEe-CCcccccc
Confidence 0011123346678888888766 4678 99999999988655431222 111 110 1
Q ss_pred C---ceeEEeeeEEEeecCCcccccccc
Q 035933 154 D---VIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 154 g---~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
| +..++++++||+|+|..|.+.+.+
T Consensus 149 g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 149 GLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 1 345699999999999999988776
No 65
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.58 E-value=1e-14 Score=119.39 Aligned_cols=142 Identities=19% Similarity=0.205 Sum_probs=86.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCc----ceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGA----GIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
++||+|||||||||+||+.|++.|++|.|||++..+..+...|. .+.++..+..+|++++..-+..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~---------- 86 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEY---------- 86 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-----------
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEe----------
Confidence 58999999999999999999999999999999988754322221 2445666777777776621111
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHh-cCCCce-EEecceEEEEEEecCCCeEEEEEeec---C-C---
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYN-TLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNL---R-T--- 153 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~---~-~--- 153 (405)
+..++..+...+...|.. .++.|+ ++..+.|.++...++ ..|.-.+.+. . .
T Consensus 87 -------------------~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glH 146 (230)
T PF01946_consen 87 -------------------GDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLH 146 (230)
T ss_dssp -------------------SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T
T ss_pred -------------------CCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcC
Confidence 011222344555566555 447888 988999999877664 4433222111 1 1
Q ss_pred CceeEEeeeEEEeecCCcccccccc
Q 035933 154 DVIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
=++..+++++||+|+|+.+.+-+.+
T Consensus 147 vDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 147 VDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp -B-EEEEESEEEE---SSSSSTSHH
T ss_pred CCcceEEEeEEEeCCCCchHHHHHH
Confidence 2345699999999999999776654
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.58 E-value=2e-14 Score=127.94 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC--CCcceeeCc--cHHHHHHHhccChhhhhcccCCcc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP--TGAGIALHL--LSQKIVKSWLHQPDLLHNITLPLT 80 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~--~~~~~~l~~--~~~~~l~~~~~~~~~~~~~~~~~~ 80 (405)
|+.+||+||||||||++||..+++.|.+|+|||+.+.+..+-- -|...+++. ...+.+.+.......+...-....
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 3468999999999999999999999999999999998644210 011111111 122333333211112211111000
Q ss_pred cc-ccceecCccceeeeecccCCccccc-ccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 81 ID-QNRAVDREKNICRVLARDENFNYLQ-AHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
.. ...+..... ......+.+..+.. -.-..+.++|..+++ .|| ++.+++|.+|+.++ ....+. +++|..
T Consensus 81 ~~d~i~~~e~~G--i~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~---t~~g~~ 153 (408)
T COG2081 81 PEDFIDWVEGLG--IALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLD---TSSGET 153 (408)
T ss_pred HHHHHHHHHhcC--CeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEE---cCCCCE
Confidence 00 000101100 01111122222222 344677888888774 688 99999999998544 455555 678864
Q ss_pred eEEeeeEEEeecCCccc
Q 035933 157 IDVVGDLLVAADGSRSS 173 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S~ 173 (405)
++||-+|.|+|..|.
T Consensus 154 --i~~d~lilAtGG~S~ 168 (408)
T COG2081 154 --VKCDSLILATGGKSW 168 (408)
T ss_pred --EEccEEEEecCCcCC
Confidence 999999999997774
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.6e-14 Score=113.41 Aligned_cols=142 Identities=19% Similarity=0.242 Sum_probs=93.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcce-----eeCccHHHHHHHhccChhhhhcccCCccc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGI-----ALHLLSQKIVKSWLHQPDLLHNITLPLTI 81 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (405)
..||+|||||||||+||++|++.|++|+||||+-.+..+. ++.|. .+...+..+|++++..-+..++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~-w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~------- 101 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI-WGGGMLFNKIVVREEADEILDEFGIRYEEEED------- 101 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc-cccccccceeeecchHHHHHHHhCCcceecCC-------
Confidence 4699999999999999999999999999999998875532 33333 3445667777777652211111
Q ss_pred cccceecCccceeeeecccCCcccccccHHHHHHHHHh-cCCCce-EEecceEEEEEEecCC--CeEEEEEeecC-C---
Q 035933 82 DQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYN-TLPVEI-VFWGHLYLTFCISHDK--STVNVKAKNLR-T--- 153 (405)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~-i~~~~~v~~i~~~~~~--~~v~v~~~~~~-~--- 153 (405)
.++..+-..+...|.. .++.|+ |+.++.|.++...+++ .++.+...... .
T Consensus 102 ----------------------g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh 159 (262)
T COG1635 102 ----------------------GYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH 159 (262)
T ss_pred ----------------------ceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc
Confidence 1222233455555544 447788 9999999998776653 12333221111 1
Q ss_pred CceeEEeeeEEEeecCCcccccccc
Q 035933 154 DVIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
=+...+++++||+|+|+.-.+-+.+
T Consensus 160 vDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 160 VDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred cCcceeeEEEEEeCCCCchHHHHHH
Confidence 1344689999999999997765554
No 68
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.54 E-value=8.4e-13 Score=117.03 Aligned_cols=342 Identities=14% Similarity=0.106 Sum_probs=186.2
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHc------CCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILA------GWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITL 77 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~------g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 77 (405)
....+||+|||||||||++|+.|.|. .++|.|+||...+.... -.|-.+.|.+ |+++.+ .+.+.+.
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght--lSGaviep~a---ldEL~P---~wke~~a 144 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT--LSGAVIEPGA---LDELLP---DWKEDGA 144 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce--ecceeeccch---hhhhCc---chhhcCC
Confidence 34568999999999999999999873 67999999998864321 1133344443 445544 2222222
Q ss_pred ----CccccccceecCccceeee-ecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEee
Q 035933 78 ----PLTIDQNRAVDREKNICRV-LARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKN 150 (405)
Q Consensus 78 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~ 150 (405)
+...+.+.+..++..+.-. +..-.+-.-+.++-..+.++|-++++ -|+ |+-+..+..+.+++++...-|-..+
T Consensus 145 pl~t~vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D 224 (621)
T KOG2415|consen 145 PLNTPVTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATND 224 (621)
T ss_pred cccccccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeecc
Confidence 2222233333333211111 11112223456777899999999886 488 8888877777776665433333211
Q ss_pred ---cCCCcee-------EEeeeEEEeecCCcccccccccC----C--CCC-CcC-ceEEEEEEecCCCCCCchhhhhhhh
Q 035933 151 ---LRTDVII-------DVVGDLLVAADGSRSSVRQTFLP----D--SKL-RYT-GYCAWRGVFDFSENENSETIQGIRK 212 (405)
Q Consensus 151 ---~~~g~~~-------~~~~d~vV~AdG~~S~vr~~l~~----~--~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (405)
.++|..+ ++.++..|-|.|.+..+.+++.. + ..+ +|- +..-.+.+-+......
T Consensus 225 ~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG--------- 295 (621)
T KOG2415|consen 225 VGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPG--------- 295 (621)
T ss_pred ccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCc---------
Confidence 1233221 57899999999999887777531 1 111 111 1111111111000000
Q ss_pred ccCCCCCceeEeecCC--eEEEEEEeeCcceeEEEEEecccccccccccccccCCccccccCHHHHHHHHHHHHhhcChH
Q 035933 213 AYPELGNGVHTDLVPG--THTVLYELMYKRLNWIWYITQPELACFILPFICIRGGSATMKVSSDMIKKMHQEVEKICAPE 290 (405)
Q Consensus 213 ~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (405)
...+ ...+ .+..+ +-.++|...++...+.+.+-.+-...++.| +++|+ ++ + -+|.
T Consensus 296 ~v~H-T~Gw--Pl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP-----------------~~EFQ-k~-K-~hP~ 352 (621)
T KOG2415|consen 296 EVAH-TLGW--PLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSP-----------------YKEFQ-KM-K-HHPS 352 (621)
T ss_pred ceee-eccC--cccCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCH-----------------HHHHH-Hh-h-cCcc
Confidence 0000 0000 01111 224456666776666666555443322222 33432 21 2 2677
Q ss_pred HHHHHHhcCcc------ceeeecccCCCCcCccccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhhC-CCc-HHH
Q 035933 291 HATVIKETKEP------FLNLIADCDPLTQIYWDNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERWG-PEN-LHS 362 (405)
Q Consensus 291 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~~-~~~-~~~ 362 (405)
+.++++-.... +...-++ .+++.+.++=+|||=+|++++=---.|...||.++..+|+.+-+.. ..+ ...
T Consensus 353 i~~vleGgk~i~YgARaLNEGGfQ--siPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~ 430 (621)
T KOG2415|consen 353 ISKVLEGGKRIAYGARALNEGGFQ--SIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKM 430 (621)
T ss_pred hhhhhcCcceeeehhhhhccCCcc--cCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccc
Confidence 77776544321 1111222 3346677888999999999998889999999999999999986653 121 111
Q ss_pred -H--HHHHHhhccc-chHHHHHHHHHhhh
Q 035933 363 -A--LEEHKSVRLP-VTNKQVLHSRRVGL 387 (405)
Q Consensus 363 -~--l~~y~~~r~~-~~~~~~~~s~~~~~ 387 (405)
. ...|++.-+. .+.+.....|.+..
T Consensus 431 ~~~~~~~Ye~nlkds~V~KeLysvRNirP 459 (621)
T KOG2415|consen 431 AGLDPTTYEENLKDSYVWKELYSVRNIRP 459 (621)
T ss_pred cccChhhHHHhhhhhHHHHHHHHhhccCc
Confidence 1 4467665443 44444444444333
No 69
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.43 E-value=1.2e-13 Score=128.36 Aligned_cols=137 Identities=16% Similarity=0.252 Sum_probs=70.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccH-------------------------HHHH
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLS-------------------------QKIV 62 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~-------------------------~~~l 62 (405)
|||+||||||||++||+.|++.|.+|+|+||++.+.. -+.++.++ ...+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk------Kil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l 74 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK------KILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSAL 74 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H------HHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc------ceeecCCCCccccccccchhhHhhhcccchHHHHHHH
Confidence 7999999999999999999999999999999987533 22222211 1222
Q ss_pred HHhccCh--hhhhcccCCccccccceecCccceeeeecccCCcccccc-cHHHHHHHHHhcCC-Cce-EEecceEEEEEE
Q 035933 63 KSWLHQP--DLLHNITLPLTIDQNRAVDREKNICRVLARDENFNYLQA-HWTDLHGLIYNTLP-VEI-VFWGHLYLTFCI 137 (405)
Q Consensus 63 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~ 137 (405)
+++...+ ..+.+.+.+. ...+.+..+... .-..+.+.|.+.+. .++ ++++++|.+++.
T Consensus 75 ~~f~~~d~~~ff~~~Gv~~-----------------~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~ 137 (409)
T PF03486_consen 75 KRFSPEDLIAFFEELGVPT-----------------KIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK 137 (409)
T ss_dssp HHS-HHHHHHHHHHTT--E-----------------EE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE
T ss_pred hcCCHHHHHHHHHhcCCeE-----------------EEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee
Confidence 2222100 0111111110 001111112111 33677777777774 588 999999999985
Q ss_pred ecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 138 SHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 138 ~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.++ ..+.|+ ++++.. +.||.||.|+|..|.
T Consensus 138 ~~~-~~f~v~---~~~~~~--~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 KED-GVFGVK---TKNGGE--YEADAVILATGGKSY 167 (409)
T ss_dssp ETT-EEEEEE---ETTTEE--EEESEEEE----SSS
T ss_pred cCC-ceeEee---ccCccc--ccCCEEEEecCCCCc
Confidence 443 346666 434444 899999999998874
No 70
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=1.8e-12 Score=120.98 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=92.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHH----HHHHHhccChhhhhcccCCcc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQ----KIVKSWLHQPDLLHNITLPLT 80 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~~~ 80 (405)
|+..+|+|||||||||++|..|.++|++|++|||.+.+ |+-|...+..- .+.+++-. ..+..
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i------GGlW~y~~~~~~~~ss~Y~~l~t--------n~pKe 69 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI------GGLWKYTENVEVVHSSVYKSLRT--------NLPKE 69 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc------cceEeecCcccccccchhhhhhc--------cCChh
Confidence 44689999999999999999999999999999999874 44454443322 11111100 00000
Q ss_pred ccccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-c--e-EEecceEEEEEEecCCCeEEEEEeecCCCce
Q 035933 81 IDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-E--I-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVI 156 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~ 156 (405)
. ..+ ..+......+.+..++..+.++|...+++ + . +.+++++..+....+ +.|.|..+....+ .
T Consensus 70 ~--~~~--------~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~-~ 137 (448)
T KOG1399|consen 70 M--MGY--------SDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ-I 137 (448)
T ss_pred h--hcC--------CCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc-e
Confidence 0 000 11111222445557778999999998854 2 3 999999988874332 5788775432222 3
Q ss_pred eEEeeeEEEeecCCcc
Q 035933 157 IDVVGDLLVAADGSRS 172 (405)
Q Consensus 157 ~~~~~d~vV~AdG~~S 172 (405)
.+.-+|.||+|+|.+.
T Consensus 138 ~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 138 EEEIFDAVVVCTGHYV 153 (448)
T ss_pred eEEEeeEEEEcccCcC
Confidence 4577999999999993
No 71
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.41 E-value=3.6e-11 Score=116.44 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=35.4
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|++.+||+|||||++|+++|+.|+++|++|+|+||.+..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~ 41 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA 41 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 445799999999999999999999999999999998653
No 72
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.39 E-value=2.6e-12 Score=122.14 Aligned_cols=155 Identities=16% Similarity=0.166 Sum_probs=87.5
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhh-------hhc--
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDL-------LHN-- 74 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-------~~~-- 74 (405)
+++.++|+|||||||||++|..|.+.|++|+||||++.. |+.+...+.... +.++..... ...
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v------GG~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~ 78 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV------GGLWVYTPKSES--DPLSLDPTRSIVHSSVYESLR 78 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC------cceeecCCCcCC--CccccCCCCcccchhhhhhhh
Confidence 345689999999999999999999999999999999874 444444432210 001110000 000
Q ss_pred ccCCccccccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-ce---EEecceEEEEEEecCCCeEEEEEee
Q 035933 75 ITLPLTIDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-EI---VFWGHLYLTFCISHDKSTVNVKAKN 150 (405)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~i~~~~~~~~v~v~~~~ 150 (405)
...+... ..+.+.. ...............+.+.++.++|.+.+.. ++ |+++++|++++.. +..|+|+.++
T Consensus 79 tn~p~~~--m~f~dfp--~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~--~~~w~V~~~~ 152 (461)
T PLN02172 79 TNLPREC--MGYRDFP--FVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV--DGKWRVQSKN 152 (461)
T ss_pred ccCCHhh--ccCCCCC--CCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec--CCeEEEEEEc
Confidence 0000000 0000000 0000000000111224567788899887742 32 8899999999853 4578877432
Q ss_pred cCCCceeEEeeeEEEeecCCccc
Q 035933 151 LRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 151 ~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.++...+..+|.||.|+|..+.
T Consensus 153 -~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 153 -SGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred -CCCceEEEEcCEEEEeccCCCC
Confidence 1223334679999999998764
No 73
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.35 E-value=1.8e-10 Score=111.76 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|+.++||+|||||++|+++|+.|+++|++|+|+||.+..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~ 41 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA 41 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 345699999999999999999999999999999999654
No 74
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.35 E-value=7.1e-12 Score=120.72 Aligned_cols=145 Identities=12% Similarity=0.095 Sum_probs=85.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
+++|+|||||+|||++|..|.+.|++|++|||++.. |+.|....+... +. ....+............+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i------GG~W~~~~~~~~-----g~-~~~y~sl~~n~sk~~~~f 68 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI------GGLWRYTENPED-----GR-SSVYDSLHTNTSKEMMAF 68 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS------SGGGCHSTTCCC-----SE-GGGSTT-B-SS-GGGSCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC------CccCeeCCcCCC-----Cc-cccccceEEeeCchHhcC
Confidence 368999999999999999999999999999999874 544433211000 00 000000000000000000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-c--e-EEecceEEEEEEecC---CCeEEEEEeecCCCceeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-E--I-VFWGHLYLTFCISHD---KSTVNVKAKNLRTDVIIDV 159 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~i~~~~~---~~~v~v~~~~~~~g~~~~~ 159 (405)
..+....+.+. .+++..+.++|.+.++. + . |+++++|+++++.++ .+.|+|+. ..+|+..+-
T Consensus 69 --------sdfp~p~~~p~-f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~--~~~g~~~~~ 137 (531)
T PF00743_consen 69 --------SDFPFPEDYPD-FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTT--ENDGKEETE 137 (531)
T ss_dssp --------TTS-HCCCCSS-SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEE--TTTTEEEEE
T ss_pred --------CCcCCCCCCCC-CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEe--ecCCeEEEE
Confidence 01111222333 36778999999987753 2 2 999999999997654 24788874 235655556
Q ss_pred eeeEEEeecCCcccc
Q 035933 160 VGDLLVAADGSRSSV 174 (405)
Q Consensus 160 ~~d~vV~AdG~~S~v 174 (405)
.+|.||.|+|.++.-
T Consensus 138 ~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 138 EFDAVVVATGHFSKP 152 (531)
T ss_dssp EECEEEEEE-SSSCE
T ss_pred EeCeEEEcCCCcCCC
Confidence 799999999999843
No 75
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.34 E-value=3.4e-12 Score=108.85 Aligned_cols=136 Identities=20% Similarity=0.171 Sum_probs=72.0
Q ss_pred EEEcCCHHHHHHHHHHHHcCCc-EEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccc-ccceec
Q 035933 11 IIVGGSIAGISCAKALILAGWD-VVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID-QNRAVD 88 (405)
Q Consensus 11 ~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 88 (405)
+||||||||+++|..|.++|++ |+||||.+.+ |..+.-.... . .+. .+.... .....+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~------Gg~w~~~~~~----------~-~~~---~~~~~~~~~~~~~ 60 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP------GGVWRRYYSY----------T-RLH---SPSFFSSDFGLPD 60 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS------TTHHHCH-TT----------T-T-B---SSSCCTGGSS--C
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC------CCeeEEeCCC----------C-ccc---cCccccccccCCc
Confidence 7999999999999999999999 9999999774 3322211000 0 000 000000 000000
Q ss_pred CccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEe
Q 035933 89 REKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVA 166 (405)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~ 166 (405)
... ...........+...+.+.++.++|.+.++ .+. ++++++|.++.+++++ |+|+ +.++.. ++||.||.
T Consensus 61 ~~~-~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~---~~~~~~--~~a~~VVl 132 (203)
T PF13738_consen 61 FES-FSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVT---TRDGRT--IRADRVVL 132 (203)
T ss_dssp CCH-SCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEE---ETTS-E--EEEEEEEE
T ss_pred ccc-cccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEE---EEecce--eeeeeEEE
Confidence 000 000000000011222667778888877764 356 9999999999976544 8877 567743 88999999
Q ss_pred ecCCcccc
Q 035933 167 ADGSRSSV 174 (405)
Q Consensus 167 AdG~~S~v 174 (405)
|+|..|.-
T Consensus 133 AtG~~~~p 140 (203)
T PF13738_consen 133 ATGHYSHP 140 (203)
T ss_dssp ---SSCSB
T ss_pred eeeccCCC
Confidence 99987654
No 76
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.2e-11 Score=114.19 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=84.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEccCCCCCCCCCCCcceeeC-ccHHHHHHHhccChhhhhcccCCcccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWD-VVVIEKTRGPPTGNPTGAGIALH-LLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
+..+||+|||||++|+++|+.|.+.|.+ ++||||+..+ |..+..+ ..+ +-+.. .....+++..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~------Gg~W~~~ry~~------l~~~~-p~~~~~~~~~-- 70 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV------GGTWRYNRYPG------LRLDS-PKWLLGFPFL-- 70 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc------CCcchhccCCc------eEECC-chheeccCCC--
Confidence 4578999999999999999999999998 9999999874 3332221 000 00000 0000011100
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeee
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGD 162 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d 162 (405)
.+.....++....-+..+..++.+.....-+.+++.|..+.++++...|+|+ .++|...++.+|
T Consensus 71 -------------p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~---~~~~~~~~~~a~ 134 (443)
T COG2072 71 -------------PFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVT---TSDGGTGELTAD 134 (443)
T ss_pred -------------ccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEE---EcCCCeeeEecC
Confidence 0001112222222345555555554433227788888888888888899998 456654337799
Q ss_pred EEEeecCCccc
Q 035933 163 LLVAADGSRSS 173 (405)
Q Consensus 163 ~vV~AdG~~S~ 173 (405)
.||.|+|..|.
T Consensus 135 ~vV~ATG~~~~ 145 (443)
T COG2072 135 FVVVATGHLSE 145 (443)
T ss_pred EEEEeecCCCC
Confidence 99999999764
No 77
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.31 E-value=8e-10 Score=103.89 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+||+|||||++|+++|+.|+++|++|+|+||...+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 59999999999999999999999999999997653
No 78
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.27 E-value=3.9e-11 Score=111.71 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred cccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEE-EEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 107 QAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVN-VKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
.++-..+.+.|.+.+ +.|+ ++.+++|.++..+ +..|+ |+ +++|+ +.+|.||.|+|.+|..
T Consensus 143 ~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~---~~~g~---i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVR---TSDGE---IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEE---ETTEE---EEECEEEE--GGGHHH
T ss_pred cccccchhhhhHHHHHHhhhhccccccccchhhc--cccccccc---ccccc---cccceeEeccccccee
Confidence 466778888888877 4588 9999999999854 44565 66 56664 8999999999998854
No 79
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.27 E-value=1.9e-09 Score=101.20 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+++||+|||||++|+++|+.|+++|++|+|+||....
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence 3589999999999999999999999999999998653
No 80
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.24 E-value=9.7e-10 Score=110.26 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 108 AHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 108 ~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
++...+...|.+.+..|+ ++++++|+++...+ +.|+|+ +++|.. +++|.||.|+|.+|.
T Consensus 405 v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~--~~~~v~---t~~g~~--~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 405 LCPAELCRALLALAGQQLTIHFGHEVARLERED--DGWQLD---FAGGTL--ASAPVVVLANGHDAA 464 (662)
T ss_pred eCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeC--CEEEEE---ECCCcE--EECCEEEECCCCCcc
Confidence 556678888888774477 88999999998543 456665 556654 689999999999984
No 81
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.22 E-value=1.9e-10 Score=110.65 Aligned_cols=151 Identities=14% Similarity=0.100 Sum_probs=83.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCc---ceeeCccHHHHHHHhccCh-hhhhcccCCcc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGA---GIALHLLSQKIVKSWLHQP-DLLHNITLPLT 80 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~ 80 (405)
+.++||+||||||||+.||+.+++.|.+|+++|++...-....|.. |+.. ....+-++.++... ...+..+...
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~ak-g~lvrEidalGg~~g~~~d~~giq~- 79 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAK-GHLVREIDALGGEMGKAIDKTGIQF- 79 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchh-hHHHHHHHhcCCHHHHHHhhccCce-
Confidence 4569999999999999999999999999999998852110000110 1100 01112222332111 1111111110
Q ss_pred ccccceecCccceeeeecccCCcccccccHHHHHHHHHhcCC--CceEEecceEEEEEEecCCCeEEEEEeecCCCceeE
Q 035933 81 IDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP--VEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIID 158 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~ 158 (405)
...+... .. ....+...++|..+...|.+.+. .++..+...|.++..++ +....|. +.+|..
T Consensus 80 ----r~ln~sk--Gp----AV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~-grV~GV~---t~dG~~-- 143 (618)
T PRK05192 80 ----RMLNTSK--GP----AVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVEN-GRVVGVV---TQDGLE-- 143 (618)
T ss_pred ----eecccCC--CC----ceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecC-CEEEEEE---ECCCCE--
Confidence 0000000 00 00111235788888888888774 36633567788876432 2222244 456765
Q ss_pred EeeeEEEeecCCccc
Q 035933 159 VVGDLLVAADGSRSS 173 (405)
Q Consensus 159 ~~~d~vV~AdG~~S~ 173 (405)
+.|+.||+|+|.++.
T Consensus 144 I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 144 FRAKAVVLTTGTFLR 158 (618)
T ss_pred EECCEEEEeeCcchh
Confidence 899999999998764
No 82
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.19 E-value=1.7e-11 Score=116.21 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=35.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCc-cHHH-HHHHhccChhhhhcccCCccccccce
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHL-LSQK-IVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
|||||||||||++||+.+++.|.+|+|+||.+.+......+....+.. .... .... +..+....... .. ....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~g--i~~e~~~~~~~-~~--~~~~ 75 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGG--IFREFLNRLRA-RG--GYPQ 75 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHH--HHHHHHHST-----------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCC--HHHHHHHHHhh-hc--cccc
Confidence 899999999999999999999999999999988643222222222222 1111 1111 11111111110 00 0000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..... ......+++..+...|.+.+. .|+ +++++.|.++..++ +..+.|.+. ..+| ..+++|+++
T Consensus 76 ~~~~~----------~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~-~~i~~V~~~-~~~g-~~~i~A~~~ 142 (428)
T PF12831_consen 76 EDRYG----------WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG-GRITGVIVE-TKSG-RKEIRAKVF 142 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc----------cccccccccccccccccccccccccccccccccccccccc-ccccccccc-cccc-ccccccccc
Confidence 00000 000033455666667777664 588 99999999998643 222333322 2234 456999999
Q ss_pred EeecCCcccccc
Q 035933 165 VAADGSRSSVRQ 176 (405)
Q Consensus 165 V~AdG~~S~vr~ 176 (405)
|+|+|-....+.
T Consensus 143 IDaTG~g~l~~~ 154 (428)
T PF12831_consen 143 IDATGDGDLAAL 154 (428)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 999997655443
No 83
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=5.2e-09 Score=98.78 Aligned_cols=170 Identities=14% Similarity=0.097 Sum_probs=96.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccC-------h-hhhhccc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQ-------P-DLLHNIT 76 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-------~-~~~~~~~ 76 (405)
+.++||+|||||+.|+-+|.-++.+|++|+++|+++..+.. .++.-.|-+.+.+.|.+.... + +.+....
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT--SsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~A 87 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT--SSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIA 87 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc--cCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999999999999999886543 233333333344444433211 0 0000000
Q ss_pred ----CCccc------------------cccceecCc---c------------ceeeeecc-----cCCcccccccHHHHH
Q 035933 77 ----LPLTI------------------DQNRAVDRE---K------------NICRVLAR-----DENFNYLQAHWTDLH 114 (405)
Q Consensus 77 ----~~~~~------------------~~~~~~~~~---~------------~~~~~~~~-----~~~~~~~~~~r~~l~ 114 (405)
.|..+ ..+....+. . .....+.. ...++-..++-.+|.
T Consensus 88 PH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv 167 (532)
T COG0578 88 PHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLV 167 (532)
T ss_pred ccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHH
Confidence 00000 000000010 0 00000000 000111122323333
Q ss_pred HHHHh-cCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-ccccc
Q 035933 115 GLIYN-TLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTF 178 (405)
Q Consensus 115 ~~L~~-~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l 178 (405)
-.+.. +...|. +...++|+++..+.+ .+-|++.+..+|++.+++++.||-|+|.++- +++..
T Consensus 168 ~~~a~~A~~~Ga~il~~~~v~~~~re~~--v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~ 232 (532)
T COG0578 168 AANARDAAEHGAEILTYTRVESLRREGG--VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA 232 (532)
T ss_pred HHHHHHHHhcccchhhcceeeeeeecCC--EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence 33333 445677 888999999985433 6667777778889999999999999999985 45444
No 84
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.14 E-value=5.7e-10 Score=103.00 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=92.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCCCCCCCC------CcceeeCccHHHH-HHHhccC--hhhhhc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGPPTGNPT------GAGIALHLLSQKI-VKSWLHQ--PDLLHN 74 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~~~~~~~------~~~~~l~~~~~~~-l~~~~~~--~~~~~~ 74 (405)
+++||+|||||+.|+++|+.|++.+ ++|+|+||...+...+.. -.|+...+...+. +...+-. .....+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 999999999876553321 1133333321110 1000000 001111
Q ss_pred ccCCccc--cc--------------------------cceecCcc--ceeeeecccC-----CcccccccHHHHHHHHHh
Q 035933 75 ITLPLTI--DQ--------------------------NRAVDREK--NICRVLARDE-----NFNYLQAHWTDLHGLIYN 119 (405)
Q Consensus 75 ~~~~~~~--~~--------------------------~~~~~~~~--~~~~~~~~~~-----~~~~~~~~r~~l~~~L~~ 119 (405)
...+... .. ....+... .....+.... -.....++...+-..|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 1111100 00 00000000 0000000000 001123555667777777
Q ss_pred cC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-ccccc
Q 035933 120 TL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTF 178 (405)
Q Consensus 120 ~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l 178 (405)
.+ .+|+ ++++++|++|+...++ ...+. +++|+.. ++|++||.|.|..|. +.+..
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~---~~~g~~~-~~ak~Vin~AGl~Ad~la~~~ 218 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDG-VFVLN---TSNGEET-LEAKFVINAAGLYADPLAQMA 218 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCc-eEEEE---ecCCcEE-EEeeEEEECCchhHHHHHHHh
Confidence 66 4677 9999999999976554 22222 6677755 899999999999985 44444
No 85
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.14 E-value=7.6e-09 Score=98.22 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=32.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+||+|||||.+|+++|+.|++.|.+|+|+||.+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999998753
No 86
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.14 E-value=8.1e-10 Score=104.14 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-ccccc
Q 035933 107 QAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTF 178 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l 178 (405)
.++...+.+.|.+.+. .|+ ++++++|.+++.. +..+.|. +++| ++.+|.||.|+|.+|. +.+.+
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~---~~~g---~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANGVVVR---TTQG---EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCeEEEE---ECCC---EEEeCEEEECCCcchHHHHHHh
Confidence 3556778888887774 577 9999999998743 3345555 4455 3899999999999984 44444
No 87
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.13 E-value=1e-09 Score=105.92 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=34.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+.++||+|||||+||+++|+.++++|.+|+|+||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568999999999999999999999999999999874
No 88
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.11 E-value=1.4e-08 Score=96.74 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=31.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
||+|||||.+|+++|+.|+++|.+|+|+||...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 899999999999999999999999999999854
No 89
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.11 E-value=1.3e-08 Score=96.43 Aligned_cols=36 Identities=36% Similarity=0.390 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA-GW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~-g~-~v~i~E~~~~ 41 (405)
..+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 458999999999999999999995 95 9999999853
No 90
>PLN02661 Putative thiazole synthesis
Probab=99.11 E-value=7.3e-10 Score=99.50 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEccCCCCCCCCCCCcceee-----CccHHHHHHHhccChhhhhcccCCc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA-GWDVVVIEKTRGPPTGNPTGAGIAL-----HLLSQKIVKSWLHQPDLLHNITLPL 79 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~-g~~v~i~E~~~~~~~~~~~~~~~~l-----~~~~~~~l~~~~~~~~~~~~~~~~~ 79 (405)
.++||+|||||+||+++|+.|++. |++|+|+||...+..+. +..+..+ .....++|+++|... +..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~-~~gg~l~~~~vv~~~a~e~LeElGV~f---d~~---- 162 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA-WLGGQLFSAMVVRKPAHLFLDELGVPY---DEQ---- 162 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce-eeCcccccccccccHHHHHHHHcCCCc---ccC----
Confidence 358999999999999999999986 89999999987764321 1111111 111233344443310 000
Q ss_pred cccccceecCccceeeeecccCCcccccccHHHHHHHHHhcC--CCce-EEecceEEEEEEecCC-CeEEEEEe----ec
Q 035933 80 TIDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL--PVEI-VFWGHLYLTFCISHDK-STVNVKAK----NL 151 (405)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~-i~~~~~v~~i~~~~~~-~~v~v~~~----~~ 151 (405)
+ ++ ....+-..+.+.|.+++ ..++ ++.++.+.++..+++. .++.+.+. +.
T Consensus 163 --------d-------------gy-~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~ 220 (357)
T PLN02661 163 --------E-------------NY-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNH 220 (357)
T ss_pred --------C-------------Ce-eEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhcc
Confidence 0 00 00001133445555544 3577 9999999998754321 12222110 01
Q ss_pred CC---CceeEEeeeEEEeecCCcccc
Q 035933 152 RT---DVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 152 ~~---g~~~~~~~d~vV~AdG~~S~v 174 (405)
.. .+...+.++.||.|+|..+.+
T Consensus 221 ~~~s~~dp~~I~AkaVVlATGh~g~~ 246 (357)
T PLN02661 221 DTQSCMDPNVMEAKVVVSSCGHDGPF 246 (357)
T ss_pred CCCCccceeEEECCEEEEcCCCCCcc
Confidence 11 123458999999999987654
No 91
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.10 E-value=4.3e-10 Score=105.74 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=78.7
Q ss_pred EEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC-CCCcc-eeeCc-cH-HHHHHHhccChhhhhcccCCccc-cccc
Q 035933 11 IIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN-PTGAG-IALHL-LS-QKIVKSWLHQPDLLHNITLPLTI-DQNR 85 (405)
Q Consensus 11 ~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~-~~~~~-~~l~~-~~-~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 85 (405)
+|||||+||+++|+.|+++|.+|+|+||++.+.... ..|.+ ..+.. .. ....+.+......+......... ....
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 699999999999999999999999999998764321 01111 11111 11 11112221111111100000000 0000
Q ss_pred eecCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 86 AVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
+................++. .-....+.+.|.+.++ .++ ++++++|.++..+ +..+.++ . ++.. +.+|.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~-~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~~v~---~-~~~~--i~ad~ 151 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPC-SDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DNGFGVE---T-SGGE--YEADK 151 (400)
T ss_pred HHHHcCCeeEEecCCEeECC-CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CCeEEEE---E-CCcE--EEcCE
Confidence 00000000000000001111 1123566777777664 577 9999999999743 3355555 3 3443 88999
Q ss_pred EEeecCCcc
Q 035933 164 LVAADGSRS 172 (405)
Q Consensus 164 vV~AdG~~S 172 (405)
||.|+|..|
T Consensus 152 VIlAtG~~s 160 (400)
T TIGR00275 152 VILATGGLS 160 (400)
T ss_pred EEECCCCcc
Confidence 999999987
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.09 E-value=2.9e-08 Score=98.33 Aligned_cols=71 Identities=17% Similarity=0.102 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHhcC-CCce-EEecceEEEEEEec-CCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-ccccc
Q 035933 108 AHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISH-DKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTF 178 (405)
Q Consensus 108 ~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~-~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l 178 (405)
++-..+...|.+.+ ..|+ ++.+++|.++..++ ++..+.|++.+..+++..++.+|.||.|+|.+|. +++.+
T Consensus 229 vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 229 MNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred EcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 45566676676666 4677 88899999987643 2333344544444565556899999999999985 55544
No 93
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.08 E-value=1.2e-08 Score=88.71 Aligned_cols=163 Identities=14% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC-CCCcceeeCc---------cHHHHHHHhccChh
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN-PTGAGIALHL---------LSQKIVKSWLHQPD 70 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~-~~~~~~~l~~---------~~~~~l~~~~~~~~ 70 (405)
|..|.+..||+|||||+=|+++|+.|+|+|.++.++|+.+.+...+ ..|..=-+.+ -..+.++.+-..+.
T Consensus 1 ~~~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~ 80 (399)
T KOG2820|consen 1 SSEMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPE 80 (399)
T ss_pred CcccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChh
Confidence 4456667999999999999999999999999999999998775432 1111111111 01122222211000
Q ss_pred hhhcccCCccccccceecC--------------------------cc---ceeeeecccC------CcccccccHHHHHH
Q 035933 71 LLHNITLPLTIDQNRAVDR--------------------------EK---NICRVLARDE------NFNYLQAHWTDLHG 115 (405)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~--------------------------~~---~~~~~~~~~~------~~~~~~~~r~~l~~ 115 (405)
+ .+..........+.+ +. .+......+. +.....++-..-.+
T Consensus 81 ~---~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk 157 (399)
T KOG2820|consen 81 E---SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLK 157 (399)
T ss_pred h---hceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHH
Confidence 0 000000000000000 00 0000000000 11122355566677
Q ss_pred HHHhcCC-Cce-EEecceEEEEEEec-CCCeEEEEEeecCCCceeEEeeeEEEeecCCc
Q 035933 116 LIYNTLP-VEI-VFWGHLYLTFCISH-DKSTVNVKAKNLRTDVIIDVVGDLLVAADGSR 171 (405)
Q Consensus 116 ~L~~~~~-~~~-i~~~~~v~~i~~~~-~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~ 171 (405)
+|++.+. .|+ ++.+.+|..+.... ++..+.|+ +.+|.. +.++-+|.+.|.+
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~---Tt~gs~--Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQ---TTDGSI--YHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEE---eccCCe--eecceEEEEecHH
Confidence 7888774 577 99999998887543 34455565 678887 8899999999997
No 94
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.07 E-value=2.3e-09 Score=104.99 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=35.5
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|+..+..+||+|||||.||++||+.+ +.|.+|+|+||.+.
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~ 40 (543)
T PRK06263 1 MEDEIMITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLF 40 (543)
T ss_pred CCcceeccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCC
Confidence 55555568999999999999999999 89999999999864
No 95
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.06 E-value=2.3e-09 Score=105.87 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=34.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~ 42 (405)
.++||+|||||+||++||+.+++. |.+|+|+||.+..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 358999999999999999999998 9999999998764
No 96
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=3.9e-09 Score=102.38 Aligned_cols=38 Identities=34% Similarity=0.340 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||||||||.||+++|+.+++.|.+|+|+||.+...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~G 97 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAG 97 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 46899999999999999999999999999999988753
No 97
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.05 E-value=2.3e-09 Score=97.32 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=70.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
+||+||||||||+++|..|++.|++|+|||+.+. |..+.... .+. .++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-------gg~~~~~~--------------~~~--~~~~-------- 49 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-------GGQLTTTT--------------EVE--NYPG-------- 49 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-------Ccceeecc--------------ccc--ccCC--------
Confidence 6999999999999999999999999999998752 11111100 000 0000
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
++. .+....+...+.+.+ +.++ +++ ++|.+++. ++..++++ ..++.. +++|.||
T Consensus 50 ---------------~~~-~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~--~~~~~~v~---~~~~~~--~~~d~li 105 (300)
T TIGR01292 50 ---------------FPE-GISGPELMEKMKEQAVKFGAEIIY-EEVIKVDL--SDRPFKVK---TGDGKE--YTAKAVI 105 (300)
T ss_pred ---------------CCC-CCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEe--cCCeeEEE---eCCCCE--EEeCEEE
Confidence 000 011124445555544 3466 766 78888874 34456665 445554 8999999
Q ss_pred eecCCccc
Q 035933 166 AADGSRSS 173 (405)
Q Consensus 166 ~AdG~~S~ 173 (405)
.|+|....
T Consensus 106 iAtG~~~~ 113 (300)
T TIGR01292 106 IATGASAR 113 (300)
T ss_pred ECCCCCcc
Confidence 99998653
No 98
>PRK08275 putative oxidoreductase; Provisional
Probab=99.05 E-value=2.3e-09 Score=105.12 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=43.5
Q ss_pred HHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 112 DLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 112 ~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
.+.+.|.+.+ +.++ +++++.+.++..++++.-+-+...+..+|+...+.++.||.|+|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 5667777766 3578 9999999999764333222233223456766668999999999998754
No 99
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.03 E-value=1.7e-09 Score=91.24 Aligned_cols=146 Identities=20% Similarity=0.155 Sum_probs=79.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC-----CCCc----ceeeCccHHHHHHHhccChhhhhcccCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN-----PTGA----GIALHLLSQKIVKSWLHQPDLLHNITLP 78 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~-----~~~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 78 (405)
.+|+|||+|+||++||..|+..|++|+||||......+- ..|. .-.+.++....++-. +.+.+.+..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V----e~~~~~glV 77 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV----EALRDDGLV 77 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH----HHHHhCCce
Confidence 379999999999999999999999999999987642210 0010 112333222222111 111111111
Q ss_pred ccc--cccceecCccceeeeecccCCccccc-ccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCc
Q 035933 79 LTI--DQNRAVDREKNICRVLARDENFNYLQ-AHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDV 155 (405)
Q Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~ 155 (405)
... ..+...+.. ......+.++.. ..-..|.++|...+. |+++++|+.|... ++.|+++ .++|+
T Consensus 78 ~~W~~~~~~~~~~~-----~~~~~d~~pyvg~pgmsalak~LAtdL~---V~~~~rVt~v~~~--~~~W~l~---~~~g~ 144 (331)
T COG3380 78 DVWTPAVWTFTGDG-----SPPRGDEDPYVGEPGMSALAKFLATDLT---VVLETRVTEVART--DNDWTLH---TDDGT 144 (331)
T ss_pred eeccccccccccCC-----CCCCCCCCccccCcchHHHHHHHhccch---hhhhhhhhhheec--CCeeEEE---ecCCC
Confidence 000 000110000 011111222211 222455555555444 8899999999865 5678887 55555
Q ss_pred eeEEeeeEEEeecCCc
Q 035933 156 IIDVVGDLLVAADGSR 171 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~~ 171 (405)
. +..+|.||.|-=..
T Consensus 145 ~-~~~~d~vvla~PAP 159 (331)
T COG3380 145 R-HTQFDDVVLAIPAP 159 (331)
T ss_pred c-ccccceEEEecCCC
Confidence 4 47899999886554
No 100
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.02 E-value=5.1e-09 Score=102.41 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=33.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.+||+|||||+.|+++|+.|+++|++|+|+||....
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 589999999999999999999999999999997643
No 101
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.01 E-value=8.3e-09 Score=98.80 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=43.2
Q ss_pred HHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 111 TDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 111 ~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
..+.+.|.+.+ +.++ ++++++|+++..++++..+.|.+. ..+++...+.++.||.|+|..+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~-~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVK-GKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEE-eCCCeEEEEecceEEEecCCCCC
Confidence 45666776666 4578 999999999986544333334433 24555445789999999999887
No 102
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.01 E-value=7.2e-09 Score=98.67 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=44.2
Q ss_pred cHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 109 HWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 109 ~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.-..+...|.+.++ .++ ++++++++++..+ ++.-+-+.+.+..+|+...+.++.||.|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 34667777777774 578 9999999999874 3333345554457888878999999999999985
No 103
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.01 E-value=8e-09 Score=102.19 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=87.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC-CCcceee--C---ccHHH-HHHHh---c--cCh----
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP-TGAGIAL--H---LLSQK-IVKSW---L--HQP---- 69 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~-~~~~~~l--~---~~~~~-~l~~~---~--~~~---- 69 (405)
.++||+|||||.||++||+.+++.|.+|+|+||....+..+. ...++.. . ....+ .+..+ + +..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv 107 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI 107 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 468999999999999999999999999999999876443211 1112221 1 11111 11111 0 000
Q ss_pred -----------hhhhcccCCccccccceecCccceeeeecccC----------CcccccccH--HHHHHHHHhcC-CCce
Q 035933 70 -----------DLLHNITLPLTIDQNRAVDREKNICRVLARDE----------NFNYLQAHW--TDLHGLIYNTL-PVEI 125 (405)
Q Consensus 70 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~r--~~l~~~L~~~~-~~~~ 125 (405)
+.+++.+.++... .++. ......... ....+..++ ..+.+.|.+.+ +.++
T Consensus 108 ~~l~~~s~~~i~~L~~~Gv~f~~~----~~g~--~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv 181 (617)
T PTZ00139 108 QYMCREAPQAVLELESYGLPFSRT----KDGK--IYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDC 181 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCceEeC----CCCc--EeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCC
Confidence 1112222222110 0000 000000000 000000111 35667777765 4678
Q ss_pred -EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 126 -VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 126 -i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
++.++.++++..++++.-+-|.+.+..+|+...+.++.||.|+|..+..
T Consensus 182 ~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 231 (617)
T PTZ00139 182 NFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA 231 (617)
T ss_pred EEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence 9999999998753333222233334567877778999999999998753
No 104
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.00 E-value=3.3e-09 Score=96.86 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=77.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEE-ccCCCCCCCCCCCcceeeCcc--HHHHHHHhccCh-hhhhcccCCcccccc
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVI-EKTRGPPTGNPTGAGIALHLL--SQKIVKSWLHQP-DLLHNITLPLTIDQN 84 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~-E~~~~~~~~~~~~~~~~l~~~--~~~~l~~~~~~~-~~~~~~~~~~~~~~~ 84 (405)
||+|||||.||+.||+.+++.|.+|+++ ++.+....-+ |..++.=... -.+-++.++..- ...+... .
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~-------i 72 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALGGLMGRAADETG-------I 72 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT-SHHHHHHHHE-------E
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhhhHHHHHHhHhh-------h
Confidence 8999999999999999999999999999 4443332211 1112211111 112233333210 0001100 0
Q ss_pred ceecCccceeeeeccc----CCcccccccHHHHHHHHHhcCC--CceEEecceEEEEEEecCCCeEEEEEeecCCCceeE
Q 035933 85 RAVDREKNICRVLARD----ENFNYLQAHWTDLHGLIYNTLP--VEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIID 158 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~----~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~ 158 (405)
+ .+.+... ...+...++|..+.+.+.+.+. .++.....+|.++..++ +..+.|. +.+|..
T Consensus 73 ~--------~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~-~~v~GV~---~~~g~~-- 138 (392)
T PF01134_consen 73 H--------FRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVEN-GKVKGVV---TKDGEE-- 138 (392)
T ss_dssp E--------EEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECT-TEEEEEE---ETTSEE--
T ss_pred h--------hhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecC-CeEEEEE---eCCCCE--
Confidence 0 0111111 1122347899999999999884 46733577899987533 3233344 667775
Q ss_pred EeeeEEEeecCCc
Q 035933 159 VVGDLLVAADGSR 171 (405)
Q Consensus 159 ~~~d~vV~AdG~~ 171 (405)
+.+|.||.|+|.+
T Consensus 139 ~~a~~vVlaTGtf 151 (392)
T PF01134_consen 139 IEADAVVLATGTF 151 (392)
T ss_dssp EEECEEEE-TTTG
T ss_pred EecCEEEEecccc
Confidence 9999999999993
No 105
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.99 E-value=7.7e-09 Score=102.02 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=43.5
Q ss_pred HHHHHHHhcC-CCce-EEecceEEEEEEecCCCeE-EEEEeecCCCceeEEeeeEEEeecCCcccccc
Q 035933 112 DLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTV-NVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQ 176 (405)
Q Consensus 112 ~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v-~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~ 176 (405)
.+...|.+.+ ..|+ +++++.++++..+ + +.+ -+.+.+..+|+...+.++.||.|+|..|.+..
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~-g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-D-GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe-C-CEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence 4555666655 3588 9999999998754 3 333 23333345676666899999999999987643
No 106
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=9.6e-09 Score=101.42 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=43.3
Q ss_pred HHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 112 DLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 112 ~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.+...|.+.+ +.++ +++++.++++..++++.-+-|.+.+..+|....+.++.||.|+|..+.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 4666676665 4578 999999999875432322223332345777777899999999999885
No 107
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.98 E-value=7.8e-09 Score=99.19 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=49.5
Q ss_pred cccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-cccccc
Q 035933 107 QAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTFL 179 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l~ 179 (405)
.++...+...|.+.+ ..|+ ++++++|++++.++ +..|.++..+..+|+..++++|+||.|.|.+|. +++.++
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G 248 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG 248 (483)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence 466677888887776 4577 99999999998533 234555533334454445899999999988774 555553
No 108
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.98 E-value=9.3e-09 Score=101.76 Aligned_cols=38 Identities=26% Similarity=0.329 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
..+||+|||+|.||++||+.+++.|.+|+|+||....+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~ 86 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTR 86 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCC
Confidence 35799999999999999999999999999999987643
No 109
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.98 E-value=8.4e-09 Score=98.38 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=49.8
Q ss_pred cccHHHHHHHHHhcC-C-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-ccccc
Q 035933 107 QAHWTDLHGLIYNTL-P-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTF 178 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~-~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l 178 (405)
.++...+.+.|.+.+ . .|+ ++++++|.++...+ +..|++..+...+++..+++||+||.|.|.+|. +.+.+
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 477778888888777 3 377 99999999997542 345766543334453234899999999999984 44444
No 110
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.9e-09 Score=92.06 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWD-VVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
+.+||+|||||||||+||+++++.|++ ++|+|+... | +. +. . .. +-.++|..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~-------g-g~-~~-----------~--~~-~venypg~---- 54 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP-------G-GQ-LT-----------K--TT-DVENYPGF---- 54 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc-------C-Cc-cc-----------c--ce-eecCCCCC----
Confidence 468999999999999999999999999 666666533 1 00 00 0 00 11111110
Q ss_pred ceecCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeee
Q 035933 85 RAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGD 162 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d 162 (405)
+.. +.=..|.+.+.+++. -++ +.. ..|..++...+ ..+|+ +.+|+ ++++
T Consensus 55 -------------------~~~-~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~---t~~~~---~~ak 105 (305)
T COG0492 55 -------------------PGG-ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVK---TDKGT---YEAK 105 (305)
T ss_pred -------------------ccC-CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEE---ECCCe---EEEe
Confidence 000 111455566666553 465 444 66776663322 56665 45555 8999
Q ss_pred EEEeecCCccccc
Q 035933 163 LLVAADGSRSSVR 175 (405)
Q Consensus 163 ~vV~AdG~~S~vr 175 (405)
.||.|+|....--
T Consensus 106 ~vIiAtG~~~~~~ 118 (305)
T COG0492 106 AVIIATGAGARKL 118 (305)
T ss_pred EEEECcCCcccCC
Confidence 9999999987543
No 111
>PRK07121 hypothetical protein; Validated
Probab=98.97 E-value=5.8e-09 Score=101.17 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=34.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
++||+|||||.||+++|+.++++|.+|+|+||.+...
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~g 56 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAG 56 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 5899999999999999999999999999999988743
No 112
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.97 E-value=9.1e-09 Score=99.04 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=82.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCc---ceeeCccHHHHHHHhccCh-hhhhcccCCccccc
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGA---GIALHLLSQKIVKSWLHQP-DLLHNITLPLTIDQ 83 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 83 (405)
+||+|||||+||+.+|..+++.|.+|+|+|++........+.. |+.-. ...+-++.+|... ...+......
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g-~l~rEidaLGG~~~~~~d~~~i~~---- 75 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKG-ILVKEIDALGGLMGKAADKAGLQF---- 75 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccc-hhhhhhhcccchHHHHHHhhceeh----
Confidence 6999999999999999999999999999999753211101110 11000 0112233332211 0111111100
Q ss_pred cceecCccceeeeecccCCcccccccHHHHHHHHHhcCCC--ceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 84 NRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV--EIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
...+... ......+...++|..+...+.+.+.+ ++.++...++++..++++....|. +.+|.. +.|
T Consensus 76 -r~ln~sk------gpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~---t~~G~~--I~A 143 (617)
T TIGR00136 76 -RVLNSSK------GPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVV---TQDGLK--FRA 143 (617)
T ss_pred -eecccCC------CCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEE---ECCCCE--EEC
Confidence 0000000 00111222457888888888887742 563345577777643333334444 456764 899
Q ss_pred eEEEeecCCccc
Q 035933 162 DLLVAADGSRSS 173 (405)
Q Consensus 162 d~vV~AdG~~S~ 173 (405)
+.||.|+|.+..
T Consensus 144 d~VILATGtfL~ 155 (617)
T TIGR00136 144 KAVIITTGTFLR 155 (617)
T ss_pred CEEEEccCcccC
Confidence 999999999964
No 113
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.1e-08 Score=100.67 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|.....++||+|||+|.||++||+.+++.|.+|+|+||....
T Consensus 1 ~~~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~ 42 (588)
T PRK08958 1 MKLPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPT 42 (588)
T ss_pred CCCCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 444445689999999999999999999999999999998654
No 114
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.97 E-value=1.2e-08 Score=100.17 Aligned_cols=38 Identities=32% Similarity=0.523 Sum_probs=34.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
..+||+|||||.||++||+.+++.|.+|+|+||.+..+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~ 41 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTR 41 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 45899999999999999999999999999999986543
No 115
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.95 E-value=7.6e-09 Score=100.79 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
..+||+||||||||+++|..|++.|++|+|+|++. |..+. . ..+. +. ++ .
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~--------GG~~~-~--------~~~~-----~~--~~----~-- 259 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF--------GGQVL-D--------TMGI-----EN--FI----S-- 259 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--------CCeee-c--------cCcc-----cc--cC----C--
Confidence 35899999999999999999999999999997641 11110 0 0000 00 00 0
Q ss_pred eecCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 86 AVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
........+.+.|.+.+. .++ ++++++|.++... +..+.+. +++|.. +.+|.
T Consensus 260 -------------------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~--~~~~~V~---~~~g~~--i~a~~ 313 (517)
T PRK15317 260 -------------------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPA--AGLIEVE---LANGAV--LKAKT 313 (517)
T ss_pred -------------------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEE---ECCCCE--EEcCE
Confidence 000223456667777663 467 8889999999753 3456665 456654 89999
Q ss_pred EEeecCCcc
Q 035933 164 LVAADGSRS 172 (405)
Q Consensus 164 vV~AdG~~S 172 (405)
||.|+|..+
T Consensus 314 vViAtG~~~ 322 (517)
T PRK15317 314 VILATGARW 322 (517)
T ss_pred EEECCCCCc
Confidence 999999976
No 116
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.2e-08 Score=100.58 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC---CcEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAG---WDVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g---~~v~i~E~~~~~~~ 44 (405)
.++||+|||||+||++||+.+++.| .+|+|+||....+.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 3589999999999999999999998 89999999886543
No 117
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=2.3e-08 Score=98.67 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=33.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..+||+|||||.||++||+.+++.|.+|+|+||....
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~ 47 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPT 47 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCC
Confidence 4589999999999999999999999999999997643
No 118
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.95 E-value=1.1e-08 Score=100.72 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~~ 43 (405)
.++||+|||||+||++||+.+++. |.+|+|+||.+..+
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 468999999999999999999987 48999999987543
No 119
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.95 E-value=1.4e-08 Score=98.21 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.+||+|||||+||+++|+.+++.|. |+|+||.+..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~ 36 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVT 36 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCC
Confidence 4799999999999999999999998 9999999654
No 120
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.94 E-value=1.5e-08 Score=99.82 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=43.1
Q ss_pred HHHHHHHhcC-C-Cce-EEecceEEEEEEecCCCeEE-EEEeecCCCceeEEeeeEEEeecCCccccc
Q 035933 112 DLHGLIYNTL-P-VEI-VFWGHLYLTFCISHDKSTVN-VKAKNLRTDVIIDVVGDLLVAADGSRSSVR 175 (405)
Q Consensus 112 ~l~~~L~~~~-~-~~~-i~~~~~v~~i~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr 175 (405)
.+.+.|.+.+ + .++ ++.++.+.++..+ + +.+. +...+..+|+...+.++.||.|||..|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~-g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-D-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-C-CEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 5666676655 3 367 8899999998753 2 3332 222234577666789999999999999763
No 121
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.94 E-value=1.3e-08 Score=97.84 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=49.1
Q ss_pred cccHHHHHHHHHhcCC-Cc-e-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-cccccc
Q 035933 107 QAHWTDLHGLIYNTLP-VE-I-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTFL 179 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~~-~~-~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l~ 179 (405)
.++...+.+.|.+.+. .| + ++++++|++++.+++ +.|.+...+..+|+..+++|++||.|.|.+|. +++.++
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~G 254 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSG 254 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence 4666788888888774 34 7 999999999985433 23665543334454334899999988888864 555443
No 122
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.94 E-value=1.7e-08 Score=100.28 Aligned_cols=37 Identities=38% Similarity=0.492 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++||+|||||.||++||+.+++.|.+|+|+||...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 3579999999999999999999999999999987654
No 123
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.93 E-value=6.4e-09 Score=100.22 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=35.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|..|||+||||||||+.+|+.|++.|.+|+||||....
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~ 40 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNV 40 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 56799999999999999999999999999999997553
No 124
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.92 E-value=9.7e-09 Score=97.57 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+|.||++||+.++ .|.+|+|+||.+...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~g 39 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNE 39 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCC
Confidence 4689999999999999999985 799999999987643
No 125
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2.9e-08 Score=97.00 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCC--Cce-EEecceEEEEEEec----CCCeE-EEEEeecCCCceeEEeeeEEEeecCCcccccc
Q 035933 111 TDLHGLIYNTLP--VEI-VFWGHLYLTFCISH----DKSTV-NVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQ 176 (405)
Q Consensus 111 ~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~----~~~~v-~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~ 176 (405)
..+...|.+.+. .++ ++.++.+.++..++ +++.+ -|.+.+..+|+...+.++.||.|+|..+.+..
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~ 211 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL 211 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence 356666766553 478 99999998886533 12333 34443445677667899999999999997644
No 126
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.91 E-value=1.4e-08 Score=97.59 Aligned_cols=34 Identities=38% Similarity=0.545 Sum_probs=32.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+||+|||||+||+++|+.+++.|.+|+|+||.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999864
No 127
>PRK09897 hypothetical protein; Provisional
Probab=98.91 E-value=1.9e-08 Score=96.88 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.2
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~ 42 (405)
++|+||||||+|+++|..|.+.+ ++|+|||++..+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 58999999999999999998864 599999998764
No 128
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.91 E-value=2.4e-08 Score=98.11 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEE-EEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 111 TDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVN-VKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 111 ~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
..+.+.|.+.+. .++ ++.++.+.++..+ + +.+. +...+..+|+...+.++.||.|||..+.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-D-GRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-C-CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 456777777653 367 8889999998753 2 3332 33333457776678999999999999864
No 129
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=4.5e-08 Score=96.57 Aligned_cols=39 Identities=31% Similarity=0.362 Sum_probs=35.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
|.+.||+|||+|+||++||+.+++.|.+|+|+||.+..+
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 346799999999999999999999999999999987643
No 130
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.91 E-value=1.2e-08 Score=98.26 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+.+|||+||||||||+.+|..|++.|.+|+|+|+++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~ 38 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYST 38 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999754
No 131
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.90 E-value=2.8e-08 Score=97.11 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+|.||++||+.+++.|.+|+|+||.+...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 35899999999999999999999999999999988653
No 132
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=2.8e-08 Score=98.08 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=43.7
Q ss_pred HHHHHHHHhcC-CCce-EEecceEEEEEEecC--CCeE-EEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 111 TDLHGLIYNTL-PVEI-VFWGHLYLTFCISHD--KSTV-NVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 111 ~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~--~~~v-~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
..+.+.|.+.+ +.++ ++.++.+.++..+++ ++.+ -+...+..+|+...+.++.||.|+|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35666777766 4578 999999999875432 1222 233223456766678999999999999864
No 133
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.89 E-value=8.8e-09 Score=95.00 Aligned_cols=116 Identities=14% Similarity=0.037 Sum_probs=71.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC----C-CcceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP----T-GAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~----~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
.||+|||||+||+.+|+.|+++|++|+|+|+++....... . ....+.+..+...+...|.....++..+...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~--- 79 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLI--- 79 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHHhcchh---
Confidence 5999999999999999999999999999998876532110 0 1233344455566667766544444322100
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEE
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFC 136 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~ 136 (405)
.... ... .-.......++|..+.+.|.+.+. .++ ++ ..+|.++.
T Consensus 80 -~~aa-d~~-------~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 80 -MEAA-DAH-------RVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred -eecc-ccc-------CCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 0000 000 001223357899999999999884 355 54 45666663
No 134
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.89 E-value=3e-08 Score=98.43 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++||+|||||.||++||+.+++.|.+|+|+||.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 3589999999999999999999999999999998754
No 135
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.89 E-value=1.1e-08 Score=99.63 Aligned_cols=111 Identities=15% Similarity=0.167 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNR 85 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 85 (405)
..+||+||||||||+++|..|++.|++|+|+|.+. |.-+ .. ..+. .. + ..
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~--------GG~~-~~--------~~~~-----~~--~------~~ 260 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI--------GGQV-KD--------TVGI-----EN--L------IS 260 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC--------CCcc-cc--------CcCc-----cc--c------cc
Confidence 45899999999999999999999999999997531 1101 00 0000 00 0 00
Q ss_pred eecCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 86 AVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
.+ ......+.+.|.+.+. .++ ++.+++|.++..+ ...+.++ .++|.. +.+|.
T Consensus 261 -----------------~~--~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~--~~~~~v~---~~~g~~--i~~d~ 314 (515)
T TIGR03140 261 -----------------VP--YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETE--DGLIVVT---LESGEV--LKAKS 314 (515)
T ss_pred -----------------cC--CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEec--CCeEEEE---ECCCCE--EEeCE
Confidence 00 0112445555555553 467 8889999998743 3345555 456664 89999
Q ss_pred EEeecCCcc
Q 035933 164 LVAADGSRS 172 (405)
Q Consensus 164 vV~AdG~~S 172 (405)
||.|+|...
T Consensus 315 lIlAtGa~~ 323 (515)
T TIGR03140 315 VIVATGARW 323 (515)
T ss_pred EEECCCCCc
Confidence 999999874
No 136
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.88 E-value=4.1e-08 Score=95.27 Aligned_cols=160 Identities=20% Similarity=0.235 Sum_probs=83.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCC-Ccceee--Cc-cH-HHHHHHh---c--cCh------
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPT-GAGIAL--HL-LS-QKIVKSW---L--HQP------ 69 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~-~~~~~l--~~-~~-~~~l~~~---~--~~~------ 69 (405)
..+||+|||+|.||++||+.+++ |.+|+|+||.+.....+.. ..++.. .+ .+ ...++.+ + ...
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 46899999999999999999976 9999999999875442211 112221 11 11 1111111 0 000
Q ss_pred ---------hhhhcccCCccccccc-e---ecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEE
Q 035933 70 ---------DLLHNITLPLTIDQNR-A---VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTF 135 (405)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i 135 (405)
+.+.+.+.++...... . ..+.....+......+ ..-..+.+.|.+.+..++ ++.++.+.++
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd-----~~g~~i~~~L~~~~~~gV~i~~~~~v~~L 155 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGD-----ATGKNLLEHLLQELVPHVTVVEQEMVIDL 155 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCC-----CcHHHHHHHHHHHHhcCCEEEECeEhhhe
Confidence 1112222222110000 0 0000000000000000 011346667777666688 9999999998
Q ss_pred EEecCCCeEE-EEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 136 CISHDKSTVN-VKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 136 ~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
..+ + +.+. +... ..+|+...+.++.||.|+|..+.+
T Consensus 156 i~~-~-g~v~Gv~~~-~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 156 IIE-N-GRCIGVLTK-DSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred eec-C-CEEEEEEEE-ECCCcEEEEEcCeEEEecCCCccc
Confidence 643 2 3332 3322 235665568999999999998863
No 137
>PLN02612 phytoene desaturase
Probab=98.88 E-value=2.3e-07 Score=91.13 Aligned_cols=62 Identities=24% Similarity=0.241 Sum_probs=46.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC-----CC----cc----eeeCccHHHHHHHhccC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP-----TG----AG----IALHLLSQKIVKSWLHQ 68 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~-----~~----~~----~~l~~~~~~~l~~~~~~ 68 (405)
..+|+|||||++|+++|+.|+++|++|+|+|++..+..... .| .| ....++..++++++|+.
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~ 167 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIN 167 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCc
Confidence 47899999999999999999999999999999876432110 01 11 12345678888988874
No 138
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.87 E-value=3.6e-08 Score=94.45 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHhcC-C----Cc--e-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-cccc
Q 035933 107 QAHWTDLHGLIYNTL-P----VE--I-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQT 177 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~-~----~~--~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~ 177 (405)
.++...+.+.|.+.+ + .| + ++++++|.++.... +..+.|+ +++|. ++||.||.|.|.+|. +.+.
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~---T~~G~---i~A~~VVvaAG~~S~~La~~ 279 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIH---TNRGE---IRARFVVVSACGYSLLFAQK 279 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEE---ECCCE---EEeCEEEECcChhHHHHHHH
Confidence 456677777777666 3 35 6 89999999998532 4456665 45553 899999999999985 4444
Q ss_pred c
Q 035933 178 F 178 (405)
Q Consensus 178 l 178 (405)
+
T Consensus 280 ~ 280 (497)
T PTZ00383 280 M 280 (497)
T ss_pred h
Confidence 4
No 139
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.87 E-value=2.7e-08 Score=97.59 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
.|||+||||||||+++|..|++.|++|+|||+..
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4899999999999999999999999999999853
No 140
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.85 E-value=2.5e-08 Score=93.21 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+||+|||||++|+++|+.|++.|.+|+|+|+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 59999999999999999999999999999998653
No 141
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.85 E-value=4.5e-07 Score=85.48 Aligned_cols=38 Identities=37% Similarity=0.481 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
+++||+|||||++|+++|+.|+++|.+|+|+|+.....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 46899999999999999999999999999999987643
No 142
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.84 E-value=2.3e-08 Score=95.63 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=33.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|||+||||||||+++|..|++.|.+|+||||.+.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 469999999999999999999999999999999864
No 143
>PRK06370 mercuric reductase; Validated
Probab=98.84 E-value=1.7e-08 Score=97.25 Aligned_cols=37 Identities=27% Similarity=0.323 Sum_probs=34.4
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
||.++||+||||||||+++|+.|++.|.+|+|+||..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4677999999999999999999999999999999864
No 144
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.84 E-value=4.2e-08 Score=97.64 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||||.||+++|+.+++.|.+|+|+||.+..+
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~ 41 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR 41 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 46899999999999999999999999999999987654
No 145
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.84 E-value=4.5e-08 Score=94.15 Aligned_cols=58 Identities=10% Similarity=-0.048 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 107 QAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.++-..+...|.+.+ ..|+ ++.++.|.+++. + ..+.|+ +++|+ +.||.||.|+|.+|.
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~--~-~~~~v~---t~~g~---v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE--G-QPAVVR---TPDGQ---VTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee--C-CceEEE---eCCcE---EECCEEEEccccccc
Confidence 355667777787766 4688 999999999873 2 235554 45553 899999999999864
No 146
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.84 E-value=2.6e-08 Score=95.89 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|||+||||||||+.+|..+++.|.+|+|+|++..
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~ 37 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRST 37 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 469999999999999999999999999999998644
No 147
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.82 E-value=7.2e-07 Score=86.15 Aligned_cols=61 Identities=23% Similarity=0.272 Sum_probs=43.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc------CCcEEEEccCCCCCCCCC----------CCc-ce-eeCccHHHHHHHhccC
Q 035933 8 PKAIIVGGSIAGISCAKALILA------GWDVVVIEKTRGPPTGNP----------TGA-GI-ALHLLSQKIVKSWLHQ 68 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~------g~~v~i~E~~~~~~~~~~----------~~~-~~-~l~~~~~~~l~~~~~~ 68 (405)
++|+|||||+|||++|+.|++. |++|+|+|+++.+..... .|. .+ .-++...++++++|+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 3799999999999999999986 489999999987643210 111 11 1134456788888764
No 148
>PLN02815 L-aspartate oxidase
Probab=98.82 E-value=6e-08 Score=95.20 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+|.||+++|+.+++.| +|+|+||.+...
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~g 64 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHE 64 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCC
Confidence 3589999999999999999999999 999999988643
No 149
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.82 E-value=7.4e-08 Score=95.15 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=30.9
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 10 AIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|+|||+|+||++||+.+++.|.+|+|+||.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 799999999999999999999999999998743
No 150
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.82 E-value=4.1e-08 Score=79.55 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=72.1
Q ss_pred EEEcCCHHHHHHHHHHHHc-----CCcEEEEccCCCCCCCCCCCcceeeCcc-HHHHHHHhccChhhhhccc-CCccccc
Q 035933 11 IIVGGSIAGISCAKALILA-----GWDVVVIEKTRGPPTGNPTGAGIALHLL-SQKIVKSWLHQPDLLHNIT-LPLTIDQ 83 (405)
Q Consensus 11 ~IiGaG~aGl~~A~~L~~~-----g~~v~i~E~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~-~~~~~~~ 83 (405)
+||||||+|++++..|.++ ..+|+|||+.+. |.|....+. ....+-+. ....+.-.. .+ ....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-------G~G~~~~~~~~~~~llN~--~a~~~s~~~~~~-~~~f 70 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-------GAGGAYRPDQPPSHLLNT--PADQMSLFPDDP-GDDF 70 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-------cccccCCCCCChHHhhcc--cccccccccccC-CCCH
Confidence 6999999999999999987 579999999544 222222221 11111111 111111000 00 0001
Q ss_pred cceecCccceeeeecccCCcccccccHHHHHHHHHhcC-------CCce--EEecceEEEEEEecCCCeEEEEEeecCCC
Q 035933 84 NRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-------PVEI--VFWGHLYLTFCISHDKSTVNVKAKNLRTD 154 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-------~~~~--i~~~~~v~~i~~~~~~~~v~v~~~~~~~g 154 (405)
..+..... . .. .....+...++|..+-++|.+.+ +.++ .+...+|+++...+++ +.+. +.+|
T Consensus 71 ~~Wl~~~~-~-~~--~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~---~~~g 141 (156)
T PF13454_consen 71 VDWLRANG-A-DE--AEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVV---TADG 141 (156)
T ss_pred HHHHHhcC-c-cc--ccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEE---ECCC
Confidence 11111111 0 00 00111222355655555544322 3454 4557789999865443 5554 5688
Q ss_pred ceeEEeeeEEEeecCC
Q 035933 155 VIIDVVGDLLVAADGS 170 (405)
Q Consensus 155 ~~~~~~~d~vV~AdG~ 170 (405)
.. +.+|.||.|+|.
T Consensus 142 ~~--~~~d~VvLa~Gh 155 (156)
T PF13454_consen 142 QS--IRADAVVLATGH 155 (156)
T ss_pred CE--EEeCEEEECCCC
Confidence 76 899999999996
No 151
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.80 E-value=2.3e-08 Score=96.31 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
|.++||+||||||||+++|+.|++.|.+|+|+|+.
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 34699999999999999999999999999999986
No 152
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.79 E-value=4.1e-08 Score=94.82 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
..|||+||||||||+++|..|++.|.+|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4799999999999999999999999999999985
No 153
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.79 E-value=8.2e-09 Score=70.33 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=28.9
Q ss_pred EEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 12 IVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 12 IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|||||++||++|+.|++.|++|+|+|+++.+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 8999999999999999999999999999875
No 154
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.77 E-value=1.3e-08 Score=86.57 Aligned_cols=33 Identities=42% Similarity=0.684 Sum_probs=31.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999988764
No 155
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.77 E-value=1.7e-08 Score=92.34 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=79.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCc-cccccc
Q 035933 8 PKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPL-TIDQNR 85 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 85 (405)
+|+++||.||++|++|+.|.+.+ .++..|||++.... -.|+.+....+ .. ..+.+..... ....++
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~W----h~gmll~~~~~------q~--~fl~Dlvt~~~P~s~~s 70 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSW----HPGMLLPGARM------QV--SFLKDLVTLRDPTSPFS 70 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--T----TGGG--SS-B-------SS---TTSSSSTTT-TTSTTS
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCc----CCccCCCCCcc------cc--ccccccCcCcCCCCccc
Confidence 79999999999999999999986 99999999987543 11332222111 00 0111110000 000111
Q ss_pred eecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-ce-EEecceEEEEEEecCC--CeEEEEEeecCCCceeEEee
Q 035933 86 AVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-EI-VFWGHLYLTFCISHDK--STVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~i~~~~~~--~~v~v~~~~~~~g~~~~~~~ 161 (405)
+.+.-... ..+..-.+.....+.|.++.++|.-.+.. .. +.++++|++|+...+. ..++|+.++ .+|+...+.|
T Consensus 71 flnYL~~~-~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~a 148 (341)
T PF13434_consen 71 FLNYLHEH-GRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRA 148 (341)
T ss_dssp HHHHHHHT-T-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEE
T ss_pred HHHHHHHc-CChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEe
Confidence 11100000 00111112234557888888888776543 23 8899999999987655 247777554 5676667999
Q ss_pred eEEEeecCCcccccccc
Q 035933 162 DLLVAADGSRSSVRQTF 178 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l 178 (405)
+.||.|+|..-.+...+
T Consensus 149 r~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 149 RNVVLATGGQPRIPEWF 165 (341)
T ss_dssp SEEEE----EE---GGG
T ss_pred CeEEECcCCCCCCCcch
Confidence 99999999665555554
No 156
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.76 E-value=6.8e-08 Score=92.51 Aligned_cols=36 Identities=39% Similarity=0.585 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|||+||||||||+.+|+.|+++|.+|+|+|+.+.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 469999999999999999999999999999999753
No 157
>PRK14694 putative mercuric reductase; Provisional
Probab=98.76 E-value=1.1e-07 Score=91.61 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
..+||+||||||||+++|..|++.|.+|+|||+..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 56999999999999999999999999999999863
No 158
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.75 E-value=1.4e-07 Score=92.66 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.++||+|||+|.||+++|+.+++.|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~ 38 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE 38 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 468999999999999999999999999999999983
No 159
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.74 E-value=9.7e-08 Score=92.19 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEcc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEK 38 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~ 38 (405)
..|||+||||||||+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 469999999999999999999999999999998
No 160
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.73 E-value=2.3e-07 Score=91.16 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=31.5
Q ss_pred cEEEEcCCHHHHHHHHHHH----HcCCcEEEEccCCCC
Q 035933 9 KAIIVGGSIAGISCAKALI----LAGWDVVVIEKTRGP 42 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~----~~g~~v~i~E~~~~~ 42 (405)
||+|||||.||++||+.++ +.|.+|+|+||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 7999999999999999998 679999999998764
No 161
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.73 E-value=1.4e-07 Score=91.04 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
.+|||+||||||||+++|..|++.|++|+|+||..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 35899999999999999999999999999999875
No 162
>PRK06116 glutathione reductase; Validated
Probab=98.72 E-value=6.8e-08 Score=92.78 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+|||+||||||||+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 4699999999999999999999999999999986
No 163
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.71 E-value=9.3e-08 Score=91.56 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=32.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
++|||+||||||||+.+|+.|++.|.+|+|+||..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36999999999999999999999999999999863
No 164
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.71 E-value=1.9e-07 Score=85.69 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHhcCC--Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 107 QAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
.++...|-+.|.+.+. .++ ++++++|.++.+. +++.|.|+.++..+|+..++++++|++..|.+|.-
T Consensus 177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~-~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRN-GDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEEC-CCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 3666777777777663 367 9999999999864 34568888888888888889999999999999863
No 165
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.71 E-value=5.6e-08 Score=93.08 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
+|||+||||||||+++|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 166
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.70 E-value=4.5e-07 Score=89.05 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=37.1
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|.+...++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 1 ~~~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 1 MAMTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCCCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 444445789999999999999999999999999999998764
No 167
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.70 E-value=1.8e-07 Score=91.46 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
..+||+|||+|.||++||+.++ .|.+|+|+||.+...
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~g 44 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKT 44 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCC
Confidence 4589999999999999999997 499999999987643
No 168
>PRK10262 thioredoxin reductase; Provisional
Probab=98.70 E-value=2.6e-07 Score=84.71 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
+.+||+||||||||+++|..|+++|++|++||+.
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 5689999999999999999999999999999964
No 169
>PLN02507 glutathione reductase
Probab=98.69 E-value=1.3e-07 Score=91.63 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~ 57 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELP 57 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999973
No 170
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.67 E-value=1.9e-07 Score=90.52 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=37.2
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
++.++||+|||||.|||.+|+.+++.|++|+|+||....+.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg 43 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCC
Confidence 35679999999999999999999999999999999987653
No 171
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.65 E-value=7.6e-08 Score=99.12 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~ 341 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL 341 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence 579999999999999999999999999999998753
No 172
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.65 E-value=9.9e-08 Score=88.75 Aligned_cols=103 Identities=16% Similarity=0.105 Sum_probs=59.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCC-C----cceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPT-G----AGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~-~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
.+|+|||||+||+.+|+.|++.|++|+|||+++........ + .....+..+...++..+.....++..+...
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~--- 77 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLI--- 77 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeee---
Confidence 48999999999999999999999999999988763221000 0 011122234445555555433333322100
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHhcCC
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP 122 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 122 (405)
....+... + .......++|..+.+.|.+++.
T Consensus 78 -~~~ad~~~-I-------pagg~~~vDR~lF~~~L~~qLe 108 (433)
T TIGR00137 78 -ITAADRHA-V-------PAGGALAVDRGIFSRSLTEQVA 108 (433)
T ss_pred -eehhhhhC-C-------CCCceEEehHHHHHHHHHHHHH
Confidence 00000000 0 1122446788888888888875
No 173
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.64 E-value=9.2e-07 Score=86.13 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+| ||+++|+.+++.|.+|+|+||.+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 46899999999 99999999999999999999987643
No 174
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.63 E-value=3.2e-07 Score=84.63 Aligned_cols=154 Identities=15% Similarity=0.087 Sum_probs=83.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc---CCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCc-cccc
Q 035933 8 PKAIIVGGSIAGISCAKALILA---GWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPL-TIDQ 83 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~---g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 83 (405)
++|+|||+|++|+..|.+|.+. .-.|.|||+++.. |.|+.++...-..+-+. ....+- ...+. ....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~------G~GiaYs~~~p~~~lNv--~a~~mS-~~~pD~p~~F 72 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF------GQGIAYSTEEPEHLLNV--PAARMS-AFAPDIPQDF 72 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc------CCCccCCCCCchhhhcc--cccccc-ccCCCCchHH
Confidence 6999999999999999999985 2239999999874 55666654322111111 000000 00000 0001
Q ss_pred cceecCccceeeeecc--cCCcccccccHHHHHHHHHhcC-------CCc-eEEecceEEEEEEecCCCeEEEEEeecCC
Q 035933 84 NRAVDREKNICRVLAR--DENFNYLQAHWTDLHGLIYNTL-------PVE-IVFWGHLYLTFCISHDKSTVNVKAKNLRT 153 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~r~~l~~~L~~~~-------~~~-~i~~~~~v~~i~~~~~~~~v~v~~~~~~~ 153 (405)
..+..... ...-.. .........+|..|-++|.+++ +.. +.++..+.+++....+...+.+. ..+
T Consensus 73 ~~WL~~~~--~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~---~~~ 147 (474)
T COG4529 73 VRWLQKQL--QRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT---TAD 147 (474)
T ss_pred HHHHHhcc--cccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe---cCC
Confidence 11111100 000000 0011122345555555555433 222 56667777887765555666666 678
Q ss_pred CceeEEeeeEEEeecCCccccccc
Q 035933 154 DVIIDVVGDLLVAADGSRSSVRQT 177 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S~vr~~ 177 (405)
|.. ..||.+|.|+|..-.....
T Consensus 148 g~~--~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 148 GPS--EIADIIVLATGHSAPPADP 169 (474)
T ss_pred CCe--eeeeEEEEeccCCCCCcch
Confidence 876 7899999999987655443
No 175
>PRK14727 putative mercuric reductase; Provisional
Probab=98.61 E-value=2.6e-07 Score=89.25 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.3
Q ss_pred CCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 3 ERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 3 ~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
....++||+||||||||+.+|..|++.|.+|+|+|+...+
T Consensus 12 ~~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~ 51 (479)
T PRK14727 12 RSKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVI 51 (479)
T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcc
Confidence 3345699999999999999999999999999999997543
No 176
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.59 E-value=1e-06 Score=86.83 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+|+||+++|+.++++|.+|+|+||.+...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~g 47 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFG 47 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCC
Confidence 45899999999999999999999999999999998643
No 177
>PRK13748 putative mercuric reductase; Provisional
Probab=98.59 E-value=6.3e-07 Score=88.66 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+|||+||||||||+++|..|++.|.+|+|||+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3699999999999999999999999999999987
No 178
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.59 E-value=1.9e-07 Score=95.13 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=33.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 479999999999999999999999999999998764
No 179
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.58 E-value=4.4e-07 Score=86.66 Aligned_cols=31 Identities=29% Similarity=0.510 Sum_probs=29.2
Q ss_pred EEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 12 IVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 12 IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
|||+|.||+++|+.+++.|.+|+|+||.+..
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~ 31 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRA 31 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 7999999999999999999999999998753
No 180
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.58 E-value=1.5e-06 Score=92.28 Aligned_cols=38 Identities=32% Similarity=0.445 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+|.||++||+.+++.|.+|+|+||.+...
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~G 445 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLG 445 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCC
Confidence 45899999999999999999999999999999987653
No 181
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.58 E-value=3.1e-07 Score=86.60 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=34.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|++||++||||||||..+|..+++.|.+|.++|+...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~ 38 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGER 38 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCC
Confidence 4579999999999999999999999999999999963
No 182
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.57 E-value=5.9e-08 Score=93.60 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=35.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
+.+||||||||+.||++|+.|+|+|++|+|+||+..+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 468999999999999999999999999999999987644
No 183
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.56 E-value=1.4e-06 Score=90.43 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=33.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.++||+|||||.||+++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 358999999999999999999999999999999875
No 184
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.55 E-value=3.3e-07 Score=86.49 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW--DVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~~ 42 (405)
...+|+|||||+||+.+|..|+++|. +|+|+++.+..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 45799999999999999999999887 79999988764
No 185
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.54 E-value=6.1e-07 Score=87.21 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++||+|||+|.||++||+.++ |.+|+|+||.+..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~ 42 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLG 42 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCC
Confidence 4589999999999999999997 5699999998863
No 186
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.53 E-value=1.4e-06 Score=61.81 Aligned_cols=34 Identities=32% Similarity=0.585 Sum_probs=32.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5899999999999999999999999999999874
No 187
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.52 E-value=9.3e-07 Score=87.31 Aligned_cols=37 Identities=27% Similarity=0.385 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++||+|||+|++|+++|+.++++|.+|+||||.+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~ 47 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVF 47 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4689999999999999999999999999999998754
No 188
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.52 E-value=8.8e-07 Score=84.66 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=31.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGP 42 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~ 42 (405)
+|+|||||+||+.+|..|++. +.+|+|+|+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 899999999999999999987 6899999999764
No 189
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.51 E-value=8.5e-07 Score=85.59 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
+|||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999975
No 190
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.51 E-value=7e-07 Score=86.18 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEcc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEK 38 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~ 38 (405)
.|||+||||||||+++|+.|++.|.+|+|+|+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 38999999999999999999999999999999
No 191
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.50 E-value=3e-06 Score=83.71 Aligned_cols=38 Identities=29% Similarity=0.337 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++||+|||+|+||+++|+.++++|.+|+|+||.....
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~g 45 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFG 45 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 36899999999999999999999999999999998653
No 192
>PTZ00058 glutathione reductase; Provisional
Probab=98.50 E-value=6.9e-07 Score=87.14 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+|||+||||||||.++|+.+++.|.+|+|+||.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 4689999999999999999999999999999986
No 193
>PRK07208 hypothetical protein; Provisional
Probab=98.49 E-value=1.5e-07 Score=91.31 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=36.8
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
||+.+||+|||||+|||++|+.|+++|++|+|+|+++.+..
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 35668999999999999999999999999999999987643
No 194
>PRK12839 hypothetical protein; Provisional
Probab=98.49 E-value=5.3e-06 Score=81.60 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
..+||+|||+|++|+++|+.++++|.+|+|+||.....
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~g 44 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCG 44 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 46899999999999999999999999999999987643
No 195
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.48 E-value=1.7e-05 Score=68.09 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcC------CcEEEEccCCCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAG------WDVVVIEKTRGPPT 44 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g------~~v~i~E~~~~~~~ 44 (405)
+.+.++|+|||||+.|.++|++|++++ ++|+|||.+.....
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 345689999999999999999999987 89999999876543
No 196
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.47 E-value=6.5e-07 Score=85.99 Aligned_cols=34 Identities=38% Similarity=0.466 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGP 42 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~ 42 (405)
+|+|||||+||+++|..|++.+ .+|+|||+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 7999999999999999999975 599999998763
No 197
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.46 E-value=7.3e-06 Score=78.74 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc----CCcEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA----GWDVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~----g~~v~i~E~~~~~~~ 44 (405)
.+.+|+|||||+|||++|..|++. |.+|+|+|+.+.+..
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG 63 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG 63 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence 357999999999999999999995 789999999997644
No 198
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.46 E-value=3.1e-06 Score=83.11 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=33.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
++||+|||+|.||+++|+.+++.|.+|+||||.+..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~ 41 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKV 41 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 689999999999999999999999999999998754
No 199
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.45 E-value=1.9e-06 Score=79.63 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=31.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
||+|||+|.|||++|+.|++. ++|+|+-|.+...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~ 42 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE 42 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC
Confidence 999999999999999999999 9999999987653
No 200
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.43 E-value=1.9e-06 Score=83.05 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
.||+||||||+|+.+|..++++|.+|+|+||..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 489999999999999999999999999999875
No 201
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.43 E-value=2.6e-07 Score=88.27 Aligned_cols=40 Identities=35% Similarity=0.537 Sum_probs=36.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
+++++|+|||||+||++||..|.+.|++|+|+|.++....
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 3568999999999999999999999999999999987644
No 202
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.42 E-value=1.1e-06 Score=84.55 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=31.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|+||||||||+++|..+++.|.+|+|+||.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 899999999999999999999999999999753
No 203
>PLN02546 glutathione reductase
Probab=98.39 E-value=1.8e-06 Score=84.33 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=30.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEcc
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEK 38 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~ 38 (405)
+|||+||||||+|..+|..+++.|.+|+|+|+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 58999999999999999999999999999996
No 204
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.35 E-value=8.6e-06 Score=71.42 Aligned_cols=38 Identities=32% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc----CCcEEEEccCCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILA----GWDVVVIEKTRGPPT 44 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~----g~~v~i~E~~~~~~~ 44 (405)
..||+|||||-.|++.|+.|+++ |++|+|+||......
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytq 127 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQ 127 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccc
Confidence 47999999999999999999864 799999999986543
No 205
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.34 E-value=9.8e-07 Score=90.00 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..++|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999997553
No 206
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.32 E-value=5e-06 Score=80.17 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA-GWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~-g~~v~i~E~~ 39 (405)
++|||+||||||+|..+|..+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 469999999999999999999997 9999999984
No 207
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.32 E-value=3.2e-06 Score=83.50 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=34.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
++||+|||+|++|+++|+.++++|.+|+|+||.+...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~g 52 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVG 52 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 5799999999999999999999999999999987643
No 208
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.29 E-value=6.7e-06 Score=76.39 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=43.5
Q ss_pred CCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc-ccccc
Q 035933 121 LPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS-VRQTF 178 (405)
Q Consensus 121 ~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~-vr~~l 178 (405)
+..|. +....+|.++..++++..+.+++++-..|+.++++++.||-|+|..|- +|++-
T Consensus 235 ~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Md 294 (680)
T KOG0042|consen 235 ARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMD 294 (680)
T ss_pred HhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence 34566 666677777776566545567777777899999999999999999885 55554
No 209
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.29 E-value=6.8e-06 Score=77.10 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. .. .+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-------------------~~-----------~~-------- 182 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-------------------SL-----------MP-------- 182 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-------------------hh-----------CC--------
Confidence 36899999999999999999999999999999765310 00 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+...+.+.+ +.|+ +++++++.++.. +...+.+. +.+|+. +.+|+|
T Consensus 183 ------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~---~~~g~~--i~~D~v 231 (377)
T PRK04965 183 ------------------------PEVSSRLQHRLTEMGVHLLLKSQLQGLEK--TDSGIRAT---LDSGRS--IEVDAV 231 (377)
T ss_pred ------------------------HHHHHHHHHHHHhCCCEEEECCeEEEEEc--cCCEEEEE---EcCCcE--EECCEE
Confidence 01112222222 2477 888999999874 33455555 557765 899999
Q ss_pred EeecCCccc
Q 035933 165 VAADGSRSS 173 (405)
Q Consensus 165 V~AdG~~S~ 173 (405)
|.|+|..+.
T Consensus 232 I~a~G~~p~ 240 (377)
T PRK04965 232 IAAAGLRPN 240 (377)
T ss_pred EECcCCCcc
Confidence 999998764
No 210
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.29 E-value=7.3e-06 Score=78.04 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=33.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+.+++|||||||.||+.+|..|.+.+.+|+|||+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4568999999999999999999877899999998875
No 211
>PLN02568 polyamine oxidase
Probab=98.28 E-value=9.9e-07 Score=85.81 Aligned_cols=40 Identities=25% Similarity=0.537 Sum_probs=35.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcC-----CcEEEEccCCCCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAG-----WDVVVIEKTRGPPT 44 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g-----~~v~i~E~~~~~~~ 44 (405)
|++.||+|||||+|||++|+.|++.| ++|+|+|++..+..
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 55689999999999999999999887 89999999987643
No 212
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.28 E-value=1.8e-05 Score=77.78 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
.++||||||+| +|+++|+.+++.|.+|+|+||.+....
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG 52 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence 36899999999 899999999999999999999876543
No 213
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=9.7e-07 Score=82.32 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=34.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
++|+|+|||.|||+||+.|+++|++|+|+|+++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 4799999999999999999999999999999998754
No 214
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.26 E-value=9.4e-07 Score=85.25 Aligned_cols=34 Identities=32% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
++|||+||||||||+++|..|++.|.+|+|+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4699999999999999999999999999999993
No 215
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.26 E-value=1.1e-05 Score=84.43 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=33.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.+||+||||||||+++|+.|++.|++|+|+|+.+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~ 198 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA 198 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998764
No 216
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.25 E-value=1.3e-06 Score=76.10 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=33.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++||+|||||.||++||+.|+++|.+++|+-+...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 58999999999999999999999999999998865
No 217
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.23 E-value=4.5e-06 Score=77.46 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=33.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..+|+|||||++|+.+|..|++.|.+|++||+.+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 469999999999999999999999999999998764
No 218
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.22 E-value=1.7e-05 Score=69.06 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=32.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
..|+|||+|.|||+++..+-..|-.|+++|+......
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCC
Confidence 4799999999999999999998777999999987543
No 219
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.22 E-value=1.2e-05 Score=75.84 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=69.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. +...
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-------------------~~~~------------------- 185 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-------------------RNAP------------------- 185 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh-------------------hhcC-------------------
Confidence 36899999999999999999999999999999765310 0000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+.+.+.+.+ +.|+ ++++++|.+++. +..+.++ +.+|+. +.+|+|
T Consensus 186 ------------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~~~v~---l~~g~~--i~aD~V 233 (396)
T PRK09754 186 ------------------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD---GEKVELT---LQSGET--LQADVV 233 (396)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCEEEEE---ECCCCE--EECCEE
Confidence 11122222322 3477 889999999863 2345555 567775 899999
Q ss_pred EeecCCcccc
Q 035933 165 VAADGSRSSV 174 (405)
Q Consensus 165 V~AdG~~S~v 174 (405)
|.|.|.....
T Consensus 234 v~a~G~~pn~ 243 (396)
T PRK09754 234 IYGIGISAND 243 (396)
T ss_pred EECCCCChhh
Confidence 9999987653
No 220
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.22 E-value=1.3e-06 Score=84.05 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=33.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGPP 43 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~~ 43 (405)
++|+|||||+|||+||+.|++.| ++|+|+|+++.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 37999999999999999999988 8999999998764
No 221
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.22 E-value=1.5e-06 Score=89.24 Aligned_cols=36 Identities=36% Similarity=0.490 Sum_probs=33.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|+.|++.|++|+|||+.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 479999999999999999999999999999998764
No 222
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.21 E-value=1.5e-06 Score=84.54 Aligned_cols=36 Identities=28% Similarity=0.591 Sum_probs=34.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 589999999999999999999999999999998764
No 223
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.21 E-value=1.8e-06 Score=79.79 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=33.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
+||+|||||+||+++|..|++.|.+|+|+|+++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 699999999999999999999999999999987643
No 224
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.21 E-value=4.3e-05 Score=66.99 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=35.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
+...||+|||||.|||.+|..|+..|.+|.|+|+..+-.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn 41 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN 41 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence 457899999999999999999999999999999987643
No 225
>PRK07233 hypothetical protein; Provisional
Probab=98.21 E-value=1.5e-06 Score=83.30 Aligned_cols=36 Identities=39% Similarity=0.495 Sum_probs=33.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
+|+|||||+|||++|+.|+++|++|+|+|+++.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 699999999999999999999999999999987644
No 226
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.19 E-value=1.7e-06 Score=84.03 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccccccc
Q 035933 111 TDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 111 ~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
..+.+.|.+.++ .|+ +++++.|.+|..++ +..+.|+ +.+|+. +++|.||.|.|.+..+++.+
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~---~~~g~~--~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILEN-GKAVGVK---LADGEK--IYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC-CcEEEEE---eCCCCE--EEcCEEEECCChHHHHHHhC
Confidence 355566777664 477 99999999998643 3334444 557765 88999999999988877655
No 227
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.18 E-value=3e-06 Score=81.63 Aligned_cols=60 Identities=27% Similarity=0.338 Sum_probs=45.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC-----CC----cc----eeeCccHHHHHHHhccC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP-----TG----AG----IALHLLSQKIVKSWLHQ 68 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~-----~~----~~----~~l~~~~~~~l~~~~~~ 68 (405)
+|+|||||+|||++|+.|+++|++|+|+|+++.+..... .| .| ....++..++++++|+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~ 73 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE 73 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc
Confidence 599999999999999999999999999999986543210 11 11 12246788889998864
No 228
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.18 E-value=1.9e-05 Score=76.32 Aligned_cols=101 Identities=17% Similarity=0.238 Sum_probs=71.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . +.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------~--~~------------------------------- 210 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP------G--ED------------------------------- 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC------C--CC-------------------------------
Confidence 36899999999999999999999999999999864210 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+.+.+.+.+ +.|+ ++.+++|.+++.+ +..+.+. ..+|...++.+|.|
T Consensus 211 ------------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~v~v~---~~~g~~~~i~~D~v 261 (461)
T TIGR01350 211 ------------------------AEVSKVVAKALKKKGVKILTNTKVTAVEKN--DDQVVYE---NKGGETETLTGEKV 261 (461)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe--CCEEEEE---EeCCcEEEEEeCEE
Confidence 11111222223 2477 9999999998743 3345554 34564335899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|..+.+.
T Consensus 262 i~a~G~~p~~~ 272 (461)
T TIGR01350 262 LVAVGRKPNTE 272 (461)
T ss_pred EEecCCcccCC
Confidence 99999988765
No 229
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.18 E-value=5.8e-06 Score=73.62 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=34.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++||+|||+||.|..+|+..++.|++.+++|++...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 3599999999999999999999999999999998775
No 230
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.17 E-value=2.1e-06 Score=81.89 Aligned_cols=36 Identities=31% Similarity=0.403 Sum_probs=33.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH--cCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALIL--AGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~--~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|++ .|++|+|||+.+.+
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p 63 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP 63 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence 4799999999999999999997 79999999999875
No 231
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.17 E-value=6.5e-06 Score=84.24 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc----CCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILA----GWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~----g~~v~i~E~~~~~ 42 (405)
+.+|+|||||+||+.+|..|.++ +++|+||++.+.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 45899999999999999999764 5899999999875
No 232
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.17 E-value=3.2e-05 Score=73.83 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=45.2
Q ss_pred cccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 107 QAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
.++-..+...|...++ -|+ |..++-|+++....++ .+.|+ +..|. +++..+|.|+|.+-..
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVe---T~~G~---iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVE---TPHGS---IETECVVNAAGVWARE 245 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-cccee---ccCcc---eecceEEechhHHHHH
Confidence 3555677778877775 588 9999999999764443 33454 66777 8999999999999743
No 233
>PLN02576 protoporphyrinogen oxidase
Probab=98.17 E-value=2.2e-06 Score=83.53 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEccCCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILA-GWDVVVIEKTRGPPT 44 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~-g~~v~i~E~~~~~~~ 44 (405)
.+||+|||||+|||++|+.|++. |++|+|+|+++.+..
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 46999999999999999999999 999999999987643
No 234
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.16 E-value=2.2e-06 Score=82.88 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=33.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc----CCcEEEEccCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILA----GWDVVVIEKTRGPP 43 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~----g~~v~i~E~~~~~~ 43 (405)
+||+|||||+|||++|+.|+++ |++|+|+|+++.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 6999999999999999999999 99999999998763
No 235
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2.7e-05 Score=75.11 Aligned_cols=104 Identities=14% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. + +.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------~--~d------------------------------- 214 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------G--TD------------------------------- 214 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------C--CC-------------------------------
Confidence 36899999999999999999999999999998765310 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+...|.+.+ +.|+ ++.+++|.+++.+ +..+.+.+....+|+..++++|.|
T Consensus 215 ------------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~--~~~v~v~~~~~~~g~~~~i~~D~v 268 (466)
T PRK06115 215 ------------------------TETAKTLQKALTKQGMKFKLGSKVTGATAG--ADGVSLTLEPAAGGAAETLQADYV 268 (466)
T ss_pred ------------------------HHHHHHHHHHHHhcCCEEEECcEEEEEEEc--CCeEEEEEEEcCCCceeEEEeCEE
Confidence 01112222222 2477 9999999999743 334555433223444445899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|....+.
T Consensus 269 i~a~G~~pn~~ 279 (466)
T PRK06115 269 LVAIGRRPYTQ 279 (466)
T ss_pred EEccCCccccc
Confidence 99999886553
No 236
>PLN02268 probable polyamine oxidase
Probab=98.15 E-value=2.4e-06 Score=81.85 Aligned_cols=37 Identities=38% Similarity=0.607 Sum_probs=33.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
.+|+|||||+|||++|+.|.+.|++|+|+|+++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 4899999999999999999999999999999987643
No 237
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.15 E-value=2.4e-06 Score=80.80 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=37.1
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
|++.+||+|||+|.+|+.+|..|++.|.+|+++|+++....
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence 35679999999999999999999999999999999987643
No 238
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.15 E-value=3.8e-06 Score=77.05 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=38.2
Q ss_pred CCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 2 RERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 2 ~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
...++..||+|||||.|||++|+.|.|.|++|+|+|.+.....
T Consensus 2 ~~p~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GG 44 (450)
T COG1231 2 TLPPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGG 44 (450)
T ss_pred CCCCCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCc
Confidence 3446778999999999999999999999999999999987644
No 239
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.7e-06 Score=74.67 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEE-ccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVI-EKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQN 84 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~-E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 84 (405)
..|||+||||||||.++|++.+|+|++.-++ ||-. . +.|+.++.. . .+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG---------G---------QvldT~~IE--N-----------fI 258 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG---------G---------QVLDTMGIE--N-----------FI 258 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC---------C---------eeccccchh--h-----------ee
Confidence 3599999999999999999999999986544 3321 1 112222220 0 00
Q ss_pred ceecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-ce-EEecceEEEEEEecC-CCeEEEEEeecCCCceeEEee
Q 035933 85 RAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-EI-VFWGHLYLTFCISHD-KSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~i~~~~~-~~~v~v~~~~~~~g~~~~~~~ 161 (405)
..... .-..|...|.+++++ .+ +....+...++.... +.-++|+ +.+|.. +++
T Consensus 259 sv~~t-------------------eGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~---l~nGav--Lka 314 (520)
T COG3634 259 SVPET-------------------EGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVE---LANGAV--LKA 314 (520)
T ss_pred ccccc-------------------cchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEE---ecCCce--ecc
Confidence 10000 115667777777753 56 666677777775332 4456777 778887 899
Q ss_pred eEEEeecCCc
Q 035933 162 DLLVAADGSR 171 (405)
Q Consensus 162 d~vV~AdG~~ 171 (405)
+-||.++|+.
T Consensus 315 ktvIlstGAr 324 (520)
T COG3634 315 RTVILATGAR 324 (520)
T ss_pred ceEEEecCcc
Confidence 9999999975
No 240
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.14 E-value=3.4e-05 Score=74.65 Aligned_cols=102 Identities=21% Similarity=0.261 Sum_probs=69.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. .+ .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-------------------~~---~------------------ 220 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-------------------TE---D------------------ 220 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-------------------cC---C------------------
Confidence 6899999999999999999999999999999865310 00 0
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+.+.+.+.+ +.|+ ++.+++|..++..+++....+. ..+|+..++.+|.||
T Consensus 221 -----------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~---~~~g~~~~i~~D~vi 274 (472)
T PRK05976 221 -----------------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVA---EHNGEEKTLEADKVL 274 (472)
T ss_pred -----------------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEE---EeCCceEEEEeCEEE
Confidence 11122222223 3477 9999999998742122222222 346654568999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 275 ~a~G~~p~~~ 284 (472)
T PRK05976 275 VSVGRRPNTE 284 (472)
T ss_pred EeeCCccCCC
Confidence 9999986653
No 241
>PRK07846 mycothione reductase; Reviewed
Probab=98.14 E-value=2.4e-05 Score=75.01 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=69.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. .+ .
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-------------------~~---d----------------- 206 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-------------------HL---D----------------- 206 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-------------------cc---C-----------------
Confidence 36899999999999999999999999999999765210 00 0
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.++.+.|.+..+.++ ++.++++.+++.+ +..+.+. +.+|+. +++|.||
T Consensus 207 ------------------------~~~~~~l~~l~~~~v~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--i~~D~vl 255 (451)
T PRK07846 207 ------------------------DDISERFTELASKRWDVRLGRNVVGVSQD--GSGVTLR---LDDGST--VEADVLL 255 (451)
T ss_pred ------------------------HHHHHHHHHHHhcCeEEEeCCEEEEEEEc--CCEEEEE---ECCCcE--eecCEEE
Confidence 011112222223457 8889999998743 3355555 446664 8999999
Q ss_pred eecCCcccc
Q 035933 166 AADGSRSSV 174 (405)
Q Consensus 166 ~AdG~~S~v 174 (405)
.|.|.....
T Consensus 256 ~a~G~~pn~ 264 (451)
T PRK07846 256 VATGRVPNG 264 (451)
T ss_pred EEECCccCc
Confidence 999998765
No 242
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.14 E-value=1.2e-05 Score=72.55 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=94.0
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCCCCCCCCCCcceeeCccHHH--HHHHhccChhhhhcccCCcc
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRGPPTGNPTGAGIALHLLSQK--IVKSWLHQPDLLHNITLPLT 80 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~~~~~~~~~~~~~ 80 (405)
|+..+|++.||-||+-|++|+.|..++ .+++.+||++..+.. .|..+....++ .|+.+-- ...|..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WH----pGmllegstlQv~FlkDLVT-------l~~PTs 70 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWH----PGMLLEGSTLQVPFLKDLVT-------LVDPTS 70 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcC----CCcccCCccccccchhhhcc-------ccCCCC
Confidence 356799999999999999999999975 789999999987542 23333332221 1222211 001100
Q ss_pred ccccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEE
Q 035933 81 IDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDV 159 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~ 159 (405)
.+++.+.-..- ..+..-.....+.+.|.++.+++.=.+..-- ++|+.+|.+|..- +.......+....+++. +
T Consensus 71 --~ySFLNYL~~h-~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~-~~d~~~~~~~~t~~~~~--y 144 (436)
T COG3486 71 --PYSFLNYLHEH-GRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSL-DGDAVVRLFVVTANGTV--Y 144 (436)
T ss_pred --chHHHHHHHHc-chHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeecccccc-CCcceeEEEEEcCCCcE--E
Confidence 11111111000 0111122334456888888888876665434 9999999988432 33333332333555654 8
Q ss_pred eeeEEEeecCCcccccccc
Q 035933 160 VGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 160 ~~d~vV~AdG~~S~vr~~l 178 (405)
.|+-||...|..-.+-.++
T Consensus 145 ~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 145 RARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred EeeeEEEccCCCcCCChHH
Confidence 9999999999887665544
No 243
>PRK12831 putative oxidoreductase; Provisional
Probab=98.13 E-value=3.2e-06 Score=81.19 Aligned_cols=37 Identities=32% Similarity=0.657 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+.+||+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999987654
No 244
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.12 E-value=3.9e-05 Score=70.26 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 111 TDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 111 ~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
..+.+.+++.+. .|+ ++|+++|.+++..++. ...|. +++|.. +.+|.||.|-|+.+.
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~-~~~v~---~~~g~~--i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNE-VLGVK---LTKGEE--IEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCc-eEEEE---ccCCcE--EecCEEEEccCcchH
Confidence 355566666664 577 9999999999864432 22333 667765 999999999999874
No 245
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.12 E-value=3.9e-05 Score=73.93 Aligned_cols=99 Identities=18% Similarity=0.267 Sum_probs=68.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. . . .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~-------------------~--~-d------------------ 210 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP-------------------G--E-D------------------ 210 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc-------------------c--c-c------------------
Confidence 5899999999999999999999999999998765210 0 0 0
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.++.+.|.+.+ +.|+ ++++++|..++. ++..+.+. .+|+..++++|+||
T Consensus 211 -----------------------~e~~~~l~~~L~~~GI~i~~~~~V~~i~~--~~~~v~~~----~~g~~~~i~~D~vi 261 (458)
T PRK06912 211 -----------------------EDIAHILREKLENDGVKIFTGAALKGLNS--YKKQALFE----YEGSIQEVNAEFVL 261 (458)
T ss_pred -----------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEE--cCCEEEEE----ECCceEEEEeCEEE
Confidence 11112222223 2477 999999999873 33344433 24544458999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|+|....+.
T Consensus 262 vA~G~~p~~~ 271 (458)
T PRK06912 262 VSVGRKPRVQ 271 (458)
T ss_pred EecCCccCCC
Confidence 9999887654
No 246
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.12 E-value=2.8e-06 Score=82.01 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
|||+||||||||+++|..|++.|.+|+|+||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999865
No 247
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.12 E-value=1.5e-05 Score=74.86 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=30.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~ 42 (405)
++|+|||||+||+.+|..|.+. ..+|+|+++.+..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~ 39 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD 39 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence 5999999999999999999886 4689999998753
No 248
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.10 E-value=2.7e-06 Score=83.04 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=32.7
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 10 AIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
|+|||||++||+||+.|++.|++|+|+|++..+..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG 35 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG 35 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcC
Confidence 69999999999999999999999999999988643
No 249
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=5.7e-06 Score=77.27 Aligned_cols=146 Identities=12% Similarity=0.055 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCc---ceeeCccHHHHHHHhccCh-hhhhcccCCcc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGA---GIALHLLSQKIVKSWLHQP-DLLHNITLPLT 80 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~ 80 (405)
+..+||+|||||-||+-||+..+|.|.+++++=-+...-..-+|.- |.+-.. -.+-++.+|..- ...+..+....
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~-lvrEIDALGG~Mg~~~D~~~IQ~r 80 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGH-LVREIDALGGLMGKAADKAGIQFR 80 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccce-eEEeehhccchHHHhhhhcCCchh
Confidence 4569999999999999999999999999999977654211111110 111000 111233333211 11122222111
Q ss_pred ccccceecCccceeeeecccCCccc-----ccccHHHHHHHHHhcCC--CceEEecceEEEEEEecCCCeEEEEEeecCC
Q 035933 81 IDQNRAVDREKNICRVLARDENFNY-----LQAHWTDLHGLIYNTLP--VEIVFWGHLYLTFCISHDKSTVNVKAKNLRT 153 (405)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~ 153 (405)
.+. ....|+ ...+|..+.+.+++.++ ++.-.+...|.++...++...+.|. +++
T Consensus 81 ---------------~LN-~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~---t~~ 141 (621)
T COG0445 81 ---------------MLN-SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV---TAD 141 (621)
T ss_pred ---------------hcc-CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE---eCC
Confidence 111 111222 23555566666666664 3553345557776643333123333 678
Q ss_pred CceeEEeeeEEEeecCCcc
Q 035933 154 DVIIDVVGDLLVAADGSRS 172 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~S 172 (405)
|.. +.|+.||.++|..=
T Consensus 142 G~~--~~a~aVVlTTGTFL 158 (621)
T COG0445 142 GPE--FHAKAVVLTTGTFL 158 (621)
T ss_pred CCe--eecCEEEEeecccc
Confidence 886 89999999999863
No 250
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.10 E-value=3.2e-06 Score=85.47 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+.++|+||||||||+++|+.|++.|++|+|||+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34799999999999999999999999999999864
No 251
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=4.1e-05 Score=73.92 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=70.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . ..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~------~--~d-------------------------------- 212 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP------N--ED-------------------------------- 212 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC------c--cC--------------------------------
Confidence 5899999999999999999999999999998764310 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.++...+.+.+ +.|+ ++.+++|.+++. ++..+.+.+. ..+|+..++++|.||
T Consensus 213 -----------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~~~~~~v~~~-~~~g~~~~i~~D~vi 266 (466)
T PRK07818 213 -----------------------AEVSKEIAKQYKKLGVKILTGTKVESIDD--NGSKVTVTVS-KKDGKAQELEADKVL 266 (466)
T ss_pred -----------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEE--eCCeEEEEEE-ecCCCeEEEEeCEEE
Confidence 01112222222 3477 999999999973 3334555432 135654468999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|....+.
T Consensus 267 ~a~G~~pn~~ 276 (466)
T PRK07818 267 QAIGFAPRVE 276 (466)
T ss_pred ECcCcccCCC
Confidence 9999887654
No 252
>PRK07846 mycothione reductase; Reviewed
Probab=98.09 E-value=2.3e-05 Score=75.11 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+|||+||||||+|..+|.. +.|.+|+|+|+..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 3899999999999988865 4699999999864
No 253
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.09 E-value=3.7e-05 Score=74.22 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=70.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. . +.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d------------------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------F--LD------------------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------c--CC-------------------------------
Confidence 36899999999999999999999999999999765310 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
.++...|.+.+ +.|+ ++.+++|..++.+ +..++++ +++|+. +++|.|
T Consensus 216 ------------------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~--~~~~~v~---~~~g~~--i~~D~v 264 (461)
T PRK05249 216 ------------------------DEISDALSYHLRDSGVTIRHNEEVEKVEGG--DDGVIVH---LKSGKK--IKADCL 264 (461)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEECCEEEEEEEe--CCeEEEE---ECCCCE--EEeCEE
Confidence 11112222222 2477 8899999998743 3345555 456664 899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|+|......
T Consensus 265 i~a~G~~p~~~ 275 (461)
T PRK05249 265 LYANGRTGNTD 275 (461)
T ss_pred EEeecCCcccc
Confidence 99999987664
No 254
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.08 E-value=1.5e-05 Score=76.43 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+|||+||||||+|..+|. ++.|.+|+++|+..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCC
Confidence 589999999999998864 45799999999854
No 255
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.07 E-value=1e-05 Score=75.62 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=29.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHc---CCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILA---GWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~---g~~v~i~E~~~~ 41 (405)
+|+|||||+||+.+|..|.++ +.+|+|||+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 599999999999999999754 689999998865
No 256
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.07 E-value=4.4e-06 Score=78.17 Aligned_cols=61 Identities=26% Similarity=0.238 Sum_probs=44.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCCCCCCC----CC-------cceeeC-ccHHHHHHHhccCh
Q 035933 9 KAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGPPTGNP----TG-------AGIALH-LLSQKIVKSWLHQP 69 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~~~~~~----~~-------~~~~l~-~~~~~~l~~~~~~~ 69 (405)
+|+|||||+|||++|+.|+|++ ++|+|||+.+....... .| ..+... +..++.++++|+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled 76 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLED 76 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHH
Confidence 7999999999999999999999 99999999876433110 01 122223 45677888888754
No 257
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.06 E-value=5.4e-06 Score=78.12 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHH-HHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKAL-ILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L-~~~g~~v~i~E~~~~~ 42 (405)
..++|+||||||||+++|..| ++.|++|+||||.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 346899999999999999976 4679999999999986
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.06 E-value=5e-06 Score=76.23 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=34.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
..+|+|||||+||+++|+.|++.|++|.++||.+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccc
Confidence 4699999999999999999999999999999999863
No 259
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=3.3e-05 Score=74.57 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=69.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . +.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~~-------------------------------- 212 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP------G--ED-------------------------------- 212 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC------c--CC--------------------------------
Confidence 5899999999999999999999999999999865310 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCC-CceeEEeeeEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRT-DVIIDVVGDLL 164 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~-g~~~~~~~d~v 164 (405)
..+...+.+.+ +.|+ ++.+++|.+++.+ +..+.+. +.+ |+..++.+|.|
T Consensus 213 -----------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~--~~~v~v~---~~~gg~~~~i~~D~v 264 (462)
T PRK06416 213 -----------------------KEISKLAERALKKRGIKIKTGAKAKKVEQT--DDGVTVT---LEDGGKEETLEADYV 264 (462)
T ss_pred -----------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe--CCEEEEE---EEeCCeeEEEEeCEE
Confidence 01112222222 3477 9999999999743 3355555 223 33345899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|......
T Consensus 265 i~a~G~~p~~~ 275 (462)
T PRK06416 265 LVAVGRRPNTE 275 (462)
T ss_pred EEeeCCccCCC
Confidence 99999887653
No 260
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=6.4e-06 Score=71.75 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=34.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
+|++|||||.+|+.+|..|+++|.+|+|+||+++...
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence 7999999999999999999999999999999998754
No 261
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.03 E-value=7.4e-06 Score=78.49 Aligned_cols=37 Identities=35% Similarity=0.603 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+.++|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 4579999999999999999999999999999998654
No 262
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.02 E-value=5.5e-06 Score=80.40 Aligned_cols=33 Identities=21% Similarity=0.397 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.|||+||||||||+.+|..|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 489999999999999999999999999999973
No 263
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.02 E-value=6.5e-06 Score=82.70 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=34.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+.++|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3579999999999999999999999999999998764
No 264
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.02 E-value=6.1e-06 Score=86.09 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+|||||||||++|..|+++|++|+|||+.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 479999999999999999999999999999998765
No 265
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.01 E-value=6.4e-05 Score=71.12 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=73.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+++|||||+.|+=.|..+++.|.+|+|+|+.+.+.. .++
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------------~~D-------------- 213 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------------GED-------------- 213 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------------cCC--------------
Confidence 5899999999999999999999999999999987411 000
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
.++.+.+.+.++ .++ ++.++++..++..++ .+.++ +++|+..++++|.|+
T Consensus 214 -----------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~--~v~v~---~~~g~~~~~~ad~vL 265 (454)
T COG1249 214 -----------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDD--GVLVT---LEDGEGGTIEADAVL 265 (454)
T ss_pred -----------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCC--eEEEE---EecCCCCEEEeeEEE
Confidence 233334444443 466 899999999874333 36666 445553348899999
Q ss_pred eecCCccccccc
Q 035933 166 AADGSRSSVRQT 177 (405)
Q Consensus 166 ~AdG~~S~vr~~ 177 (405)
.|.|+...+-..
T Consensus 266 vAiGR~Pn~~~L 277 (454)
T COG1249 266 VAIGRKPNTDGL 277 (454)
T ss_pred EccCCccCCCCC
Confidence 999988766543
No 266
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.00 E-value=7.9e-06 Score=76.77 Aligned_cols=35 Identities=34% Similarity=0.581 Sum_probs=32.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++||+|||||+||+++|+.|+++|.+|+|+|+...
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~~ 36 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQG 36 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 48999999999999999999999999999998753
No 267
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00036 Score=60.44 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=35.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC-------CcEEEEccCCCCCCCCCCCcce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAG-------WDVVVIEKTRGPPTGNPTGAGI 52 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g-------~~v~i~E~~~~~~~~~~~~~~~ 52 (405)
..+|+|||+|..||+.|..+.+.+ ++|+|++-+..+...+...+|+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~~~AGl 55 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSDVAAGL 55 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccccccce
Confidence 469999999999999998888743 6899998887765533333443
No 268
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.99 E-value=1.9e-05 Score=68.59 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=88.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCCCCCC------CCCcceeeCccHH---------HHHHHhcc
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGPPTGN------PTGAGIALHLLSQ---------KIVKSWLH 67 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~~~~~------~~~~~~~l~~~~~---------~~l~~~~~ 67 (405)
..++|+||||||+.|++.|..|.-+ +.+|.|+|+........ -+-.|+...|.++ .++.++.-
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~ 125 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD 125 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence 3579999999999999999999866 89999999987643211 1223666666543 33433321
Q ss_pred ChhhhhcccCCcc--ccccceecCc----------------cceeeeeccc-----CC----------cccccccHHHHH
Q 035933 68 QPDLLHNITLPLT--IDQNRAVDRE----------------KNICRVLARD-----EN----------FNYLQAHWTDLH 114 (405)
Q Consensus 68 ~~~~~~~~~~~~~--~~~~~~~~~~----------------~~~~~~~~~~-----~~----------~~~~~~~r~~l~ 114 (405)
+...|.. ...+.-...+ .+-.+.+... +. .....+++..+.
T Consensus 126 ------e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ 199 (453)
T KOG2665|consen 126 ------EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVT 199 (453)
T ss_pred ------hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHH
Confidence 1111110 0000000000 0000000000 00 001234555555
Q ss_pred HHHHhcCC-Cce-EEecceEEEEEEecCC---CeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 115 GLIYNTLP-VEI-VFWGHLYLTFCISHDK---STVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 115 ~~L~~~~~-~~~-i~~~~~v~~i~~~~~~---~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
..+-+..+ .+. +..+-++..+..+.+. ..++|. +|...++++.++|.|.|..|--
T Consensus 200 ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~-----ngk~ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 200 LSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVL-----NGKGEEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred HHHHHHHHHhcccccccceeccchhccCCCCCCceEEe-----cCccceeEEeEEEEeccccHhH
Confidence 55555554 344 8888899998865442 235544 4545569999999999998753
No 269
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.99 E-value=7.3e-05 Score=72.19 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=68.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. . ..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d-------------------------------- 206 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP------R--EE-------------------------------- 206 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC------c--cC--------------------------------
Confidence 6899999999999999999999999999999865310 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+...+.+.+ ..++ ++++++|..++.+ +..+.+++. . ++...++++|.||
T Consensus 207 -----------------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~--~~~~~v~~~-~-~~~~~~i~~D~Vi 259 (463)
T TIGR02053 207 -----------------------PEISAAVEEALAEEGIEVVTSAQVKAVSVR--GGGKIITVE-K-PGGQGEVEADELL 259 (463)
T ss_pred -----------------------HHHHHHHHHHHHHcCCEEEcCcEEEEEEEc--CCEEEEEEE-e-CCCceEEEeCEEE
Confidence 01111222222 3477 9999999998743 234444422 1 2222358999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 260 iA~G~~p~~~ 269 (463)
T TIGR02053 260 VATGRRPNTD 269 (463)
T ss_pred EeECCCcCCC
Confidence 9999877654
No 270
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.98 E-value=5.2e-05 Score=70.07 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC--CcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAG--WDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g--~~v~i~E~~~~~ 42 (405)
++.+|||||||.+|+.+|..|.++- .+|+++||++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 3579999999999999999999974 899999999864
No 271
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=7.7e-05 Score=71.49 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=67.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. . . .
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~--------------~---~----------------- 197 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-----R--------------E---E----------------- 197 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-----C--------------C---C-----------------
Confidence 35899999999999999999999999999999865310 0 0 0
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+...+.+.+ +.|+ ++.+++|..++. ++..+.+. .+|+. +.+|.|
T Consensus 198 ------------------------~~~~~~~~~~l~~~GI~i~~~~~V~~i~~--~~~~v~v~----~~g~~--i~~D~v 245 (438)
T PRK07251 198 ------------------------PSVAALAKQYMEEDGITFLLNAHTTEVKN--DGDQVLVV----TEDET--YRFDAL 245 (438)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEe--cCCEEEEE----ECCeE--EEcCEE
Confidence 01111222222 2477 889999999874 33345443 24443 899999
Q ss_pred EeecCCcccc
Q 035933 165 VAADGSRSSV 174 (405)
Q Consensus 165 V~AdG~~S~v 174 (405)
|.|.|.....
T Consensus 246 iva~G~~p~~ 255 (438)
T PRK07251 246 LYATGRKPNT 255 (438)
T ss_pred EEeeCCCCCc
Confidence 9999988664
No 272
>PRK06370 mercuric reductase; Validated
Probab=97.97 E-value=9.8e-05 Score=71.31 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=68.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . ..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------~--~~-------------------------------- 211 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------R--ED-------------------------------- 211 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------c--cC--------------------------------
Confidence 6899999999999999999999999999999865310 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+...+.+.+ +.|+ ++++++|.+++.++ ..+.+.+. ..++ ..++.+|.||
T Consensus 212 -----------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~~~v~~~-~~~~-~~~i~~D~Vi 264 (463)
T PRK06370 212 -----------------------EDVAAAVREILEREGIDVRLNAECIRVERDG--DGIAVGLD-CNGG-APEITGSHIL 264 (463)
T ss_pred -----------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEEEEEEE-eCCC-ceEEEeCEEE
Confidence 01112222222 3577 99999999997432 33444422 1222 2348999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 265 ~A~G~~pn~~ 274 (463)
T PRK06370 265 VAVGRVPNTD 274 (463)
T ss_pred ECcCCCcCCC
Confidence 9999876653
No 273
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.97 E-value=2.7e-05 Score=79.71 Aligned_cols=33 Identities=18% Similarity=0.540 Sum_probs=29.4
Q ss_pred EEEEcCCHHHHHHHHHHHHc---CCcEEEEccCCCC
Q 035933 10 AIIVGGSIAGISCAKALILA---GWDVVVIEKTRGP 42 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~---g~~v~i~E~~~~~ 42 (405)
|+|||||+||+.+|..|.+. +++|+|||+.+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence 69999999999999998875 5799999998875
No 274
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.97 E-value=1.6e-05 Score=76.86 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=34.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
+||+|||+||+|+++|..|++.|++|++||++....
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccC
Confidence 699999999999999999999999999999998875
No 275
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.95 E-value=1e-05 Score=78.05 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=33.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998765
No 276
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.95 E-value=6.9e-06 Score=74.36 Aligned_cols=36 Identities=36% Similarity=0.380 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRGPP 43 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~~~ 43 (405)
||+||||+|++|+.+|..|++.| .+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence 69999999999999999999997 7999999997643
No 277
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.95 E-value=8.5e-05 Score=71.34 Aligned_cols=97 Identities=15% Similarity=0.185 Sum_probs=67.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.. .+ ...+
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-------------------~~---d~~~--------------- 212 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-------------------HL---DEDI--------------- 212 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-------------------cc---CHHH---------------
Confidence 6899999999999999999999999999998754200 00 0000
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEe
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVA 166 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~ 166 (405)
+..+.+.+ ..++ ++.+++|.+++.+ +..+.++ +.+|+. +++|.|+.
T Consensus 213 ----------------------~~~l~~~~----~~gI~i~~~~~V~~i~~~--~~~v~v~---~~~g~~--i~~D~vl~ 259 (452)
T TIGR03452 213 ----------------------SDRFTEIA----KKKWDIRLGRNVTAVEQD--GDGVTLT---LDDGST--VTADVLLV 259 (452)
T ss_pred ----------------------HHHHHHHH----hcCCEEEeCCEEEEEEEc--CCeEEEE---EcCCCE--EEcCEEEE
Confidence 01111211 2356 8889999998743 3345555 445654 89999999
Q ss_pred ecCCcccc
Q 035933 167 ADGSRSSV 174 (405)
Q Consensus 167 AdG~~S~v 174 (405)
|.|.....
T Consensus 260 a~G~~pn~ 267 (452)
T TIGR03452 260 ATGRVPNG 267 (452)
T ss_pred eeccCcCC
Confidence 99987654
No 278
>PRK06116 glutathione reductase; Validated
Probab=97.95 E-value=8e-05 Score=71.65 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=70.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+++++.+.+.. . ..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~~------------------------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------G--FD------------------------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------c--cC-------------------------------
Confidence 36899999999999999999999999999998764210 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+.+.+.+.+ +.|+ ++++++|.+++.+++ ..+.+. +.+|+. +++|.|
T Consensus 208 ------------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-g~~~v~---~~~g~~--i~~D~V 257 (450)
T PRK06116 208 ------------------------PDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD-GSLTLT---LEDGET--LTVDCL 257 (450)
T ss_pred ------------------------HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC-ceEEEE---EcCCcE--EEeCEE
Confidence 01112222222 3477 999999999975332 235555 456664 899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|......
T Consensus 258 v~a~G~~p~~~ 268 (450)
T PRK06116 258 IWAIGREPNTD 268 (450)
T ss_pred EEeeCCCcCCC
Confidence 99999876654
No 279
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.94 E-value=9.7e-05 Score=71.36 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . +.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------~--~d-------------------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------A--AD-------------------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------c--CC--------------------------------
Confidence 6899999999999999999999999999999865310 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEe
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVA 166 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~ 166 (405)
..+.+.+.+.+...+ ++.+++|..++.++ ..+.+++. ..+++..++++|.||.
T Consensus 215 -----------------------~~~~~~~~~~l~~~v~i~~~~~v~~i~~~~--~~~~v~~~-~~~~~~~~i~~D~vi~ 268 (471)
T PRK06467 215 -----------------------KDIVKVFTKRIKKQFNIMLETKVTAVEAKE--DGIYVTME-GKKAPAEPQRYDAVLV 268 (471)
T ss_pred -----------------------HHHHHHHHHHHhhceEEEcCCEEEEEEEcC--CEEEEEEE-eCCCcceEEEeCEEEE
Confidence 111122222232115 88899999887433 34555432 1123234589999999
Q ss_pred ecCCccccc
Q 035933 167 ADGSRSSVR 175 (405)
Q Consensus 167 AdG~~S~vr 175 (405)
|.|....+.
T Consensus 269 a~G~~pn~~ 277 (471)
T PRK06467 269 AVGRVPNGK 277 (471)
T ss_pred eecccccCC
Confidence 999987764
No 280
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.94 E-value=6e-05 Score=69.17 Aligned_cols=141 Identities=13% Similarity=0.033 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCCCCCCCCCCc-ceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW--DVVVIEKTRGPPTGNPTGA-GIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
..++|+|||||.++.-.+..|.+++- +|+++=|++.......... ...+.|...+.+..+.. ..+.....
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~---~~R~~~l~---- 261 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPD---EERRELLR---- 261 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-H---HHHHHHHH----
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCH---HHHHHHHH----
Confidence 35799999999999999999998864 8999988875422110111 11244444444443321 11110000
Q ss_pred ccceecCccceeeeecccCCcccccccHHH---HHHHHHh-cC--CCce-EEecceEEEEEEecCCCeEEEEEeecCCCc
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTD---LHGLIYN-TL--PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDV 155 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---l~~~L~~-~~--~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~ 155 (405)
......+-.++... |-+.|.+ .+ +..+ ++.+++|.+++..+ ++.+.+++++...++
T Consensus 262 ----------------~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~-~~~~~l~~~~~~~~~ 324 (341)
T PF13434_consen 262 ----------------EQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDG-DGGVRLTLRHRQTGE 324 (341)
T ss_dssp ----------------HTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--
T ss_pred ----------------HhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECC-CCEEEEEEEECCCCC
Confidence 00000111122222 2222222 22 2234 88899999998765 347888888777788
Q ss_pred eeEEeeeEEEeecCC
Q 035933 156 IIDVVGDLLVAADGS 170 (405)
Q Consensus 156 ~~~~~~d~vV~AdG~ 170 (405)
..++++|+||.|||.
T Consensus 325 ~~~~~~D~VilATGy 339 (341)
T PF13434_consen 325 EETLEVDAVILATGY 339 (341)
T ss_dssp EEEEEESEEEE---E
T ss_pred eEEEecCEEEEcCCc
Confidence 888999999999995
No 281
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.93 E-value=1.1e-05 Score=77.86 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=32.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
+|+|||||++|+++|+.|++.|++|+|+|+++.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999998764
No 282
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.92 E-value=0.00012 Score=70.87 Aligned_cols=102 Identities=12% Similarity=0.116 Sum_probs=70.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . ..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d-------------------------------- 223 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA------A--AD-------------------------------- 223 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC------c--CC--------------------------------
Confidence 6999999999999999999999999999999765310 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+...+.+.+ ..|+ ++.+++|..++.+ +..+.+.+.+ .+|+..++.+|.||
T Consensus 224 -----------------------~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~--~~~v~v~~~~-~~g~~~~i~~D~vl 277 (475)
T PRK06327 224 -----------------------EQVAKEAAKAFTKQGLDIHLGVKIGEIKTG--GKGVSVAYTD-ADGEAQTLEVDKLI 277 (475)
T ss_pred -----------------------HHHHHHHHHHHHHcCcEEEeCcEEEEEEEc--CCEEEEEEEe-CCCceeEEEcCEEE
Confidence 11112222222 2477 9999999999743 3345555321 23444468999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 278 ~a~G~~p~~~ 287 (475)
T PRK06327 278 VSIGRVPNTD 287 (475)
T ss_pred EccCCccCCC
Confidence 9999887654
No 283
>PLN02529 lysine-specific histone demethylase 1
Probab=97.92 E-value=1.3e-05 Score=80.11 Aligned_cols=37 Identities=38% Similarity=0.675 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..++|+|||||+||+++|..|+++|++|+|+|+++..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 4579999999999999999999999999999998754
No 284
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.91 E-value=1.3e-05 Score=77.12 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=33.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 479999999999999999999999999999998764
No 285
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=0.00013 Score=70.51 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=69.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.... .+ .
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-------------------~~---d----------------- 209 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-------------------LE---D----------------- 209 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-------------------ch---h-----------------
Confidence 36899999999999999999999999999999765310 00 0
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
.++.+.+.+.+ +. + +++++++.+++.+++ ..++++ ..+++..++++|.|
T Consensus 210 ------------------------~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~-~~v~~~---~~~~~~~~i~~D~v 260 (460)
T PRK06292 210 ------------------------PEVSKQAQKILSKE-FKIKLGAKVTSVEKSGD-EKVEEL---EKGGKTETIEADYV 260 (460)
T ss_pred ------------------------HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCC-ceEEEE---EcCCceEEEEeCEE
Confidence 11122222333 23 6 888999999974322 245543 33455446899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|......
T Consensus 261 i~a~G~~p~~~ 271 (460)
T PRK06292 261 LVATGRRPNTD 271 (460)
T ss_pred EEccCCccCCC
Confidence 99999876654
No 286
>PLN02676 polyamine oxidase
Probab=97.91 E-value=1.5e-05 Score=76.94 Aligned_cols=39 Identities=41% Similarity=0.601 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~~~~ 44 (405)
..+||+|||||++||++|+.|+++|+ +|+|+|++..+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 45799999999999999999999998 6999999987543
No 287
>PLN02507 glutathione reductase
Probab=97.90 E-value=0.00011 Score=71.45 Aligned_cols=98 Identities=15% Similarity=0.224 Sum_probs=69.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.+.. . +.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------~--~d-------------------------------- 243 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------G--FD-------------------------------- 243 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------c--cC--------------------------------
Confidence 5899999999999999999999999999998764210 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+.+.+.+.+ +.|+ ++.+++|.+++.. +..+++. +.+|+. +++|.|+
T Consensus 244 -----------------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~~~v~---~~~g~~--i~~D~vl 293 (499)
T PLN02507 244 -----------------------DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGGIKVI---TDHGEE--FVADVVL 293 (499)
T ss_pred -----------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCeEEEE---ECCCcE--EEcCEEE
Confidence 11112222222 2477 9999999999743 2345555 456654 8999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 294 ~a~G~~pn~~ 303 (499)
T PLN02507 294 FATGRAPNTK 303 (499)
T ss_pred EeecCCCCCC
Confidence 9999887653
No 288
>PLN02487 zeta-carotene desaturase
Probab=97.89 E-value=1.5e-05 Score=77.72 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=46.9
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCC-----CCCc----ce----eeCccHHHHHHHhccCh
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGN-----PTGA----GI----ALHLLSQKIVKSWLHQP 69 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~-----~~~~----~~----~l~~~~~~~l~~~~~~~ 69 (405)
++|+|||||++|+++|+.|++.|++|+|+|+.+.++... ..|. |. ...++..++++++|+.+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~ 150 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADE 150 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcc
Confidence 599999999999999999999999999999998764211 0111 11 12356788888888754
No 289
>PRK02106 choline dehydrogenase; Validated
Probab=97.88 E-value=1.6e-05 Score=78.61 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHH-cCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALIL-AGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~-~g~~v~i~E~~~~ 41 (405)
...+|+||||||+||+.+|..|++ .|++|+|+|+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 456899999999999999999999 7999999999953
No 290
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.88 E-value=1.7e-05 Score=79.50 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 479999999999999999999999999999998764
No 291
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.87 E-value=1.8e-05 Score=79.61 Aligned_cols=38 Identities=32% Similarity=0.628 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
...+|+|||||+||+++|+.|++.|++|+|+|++..+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 35799999999999999999999999999999987653
No 292
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.87 E-value=1.8e-05 Score=76.17 Aligned_cols=36 Identities=31% Similarity=0.540 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 479999999999999999999999999999998764
No 293
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.87 E-value=0.00017 Score=69.64 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=69.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+... ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~--------~d-------------------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG--------ED-------------------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC--------CC--------------------------------
Confidence 58999999999999999999999999999987653110 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+...+.+.+ +.|+ ++.++++.+++.++ ..+.+. +.+|+. +++|.||
T Consensus 218 -----------------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~---~~~g~~--l~~D~vl 267 (466)
T PRK07845 218 -----------------------ADAAEVLEEVFARRGMTVLKRSRAESVERTG--DGVVVT---LTDGRT--VEGSHAL 267 (466)
T ss_pred -----------------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeC--CEEEEE---ECCCcE--EEecEEE
Confidence 00111222222 3477 88999999987433 345555 446654 8999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 268 ~a~G~~pn~~ 277 (466)
T PRK07845 268 MAVGSVPNTA 277 (466)
T ss_pred EeecCCcCCC
Confidence 9999887654
No 294
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.87 E-value=0.00013 Score=69.96 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=68.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+++|+.+.+.. . +.
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------~--~d------------------------------- 206 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------G--FD------------------------------- 206 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------c--cC-------------------------------
Confidence 35899999999999999999999999999998764210 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
.++...+.+.+ +.|+ ++.+++|.+++.++ ..+.++ +.+|+. +.+|.|
T Consensus 207 ------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~---~~~g~~--i~~D~v 255 (446)
T TIGR01424 207 ------------------------DDMRALLARNMEGRGIRIHPQTSLTSITKTD--DGLKVT---LSHGEE--IVADVV 255 (446)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC--CeEEEE---EcCCcE--eecCEE
Confidence 11112222223 2477 88999999997433 335555 346654 899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|......
T Consensus 256 iva~G~~pn~~ 266 (446)
T TIGR01424 256 LFATGRSPNTK 266 (446)
T ss_pred EEeeCCCcCCC
Confidence 99999876543
No 295
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.86 E-value=1.8e-05 Score=73.52 Aligned_cols=34 Identities=38% Similarity=0.623 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 5999999999999999999999999999998764
No 296
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.86 E-value=0.00012 Score=75.22 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=69.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+++|||||+.|+-+|..|++.|.+|+|+|+.+.... . .++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-------------------~------~ld------------- 186 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-------------------E------QLD------------- 186 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-------------------h------hcC-------------
Confidence 35899999999999999999999999999998764200 0 000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
....+.|.+.+ +.|+ ++.++.+.+|..+.......+. +.+|+. +.+|+|
T Consensus 187 ------------------------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~---~~dG~~--i~~D~V 237 (847)
T PRK14989 187 ------------------------QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMR---FADGSE--LEVDFI 237 (847)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEE---ECCCCE--EEcCEE
Confidence 11112223333 2477 9999999998743223334444 567775 899999
Q ss_pred EeecCCcccc
Q 035933 165 VAADGSRSSV 174 (405)
Q Consensus 165 V~AdG~~S~v 174 (405)
|.|.|.....
T Consensus 238 v~A~G~rPn~ 247 (847)
T PRK14989 238 VFSTGIRPQD 247 (847)
T ss_pred EECCCcccCc
Confidence 9999987653
No 297
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.85 E-value=0.00014 Score=74.57 Aligned_cols=98 Identities=22% Similarity=0.319 Sum_probs=67.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. + .+.
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------~------~ld------------- 181 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------K------QLD------------- 181 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------h------hcC-------------
Confidence 35899999999999999999999999999998754210 0 000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
....+.+.+.+ ..|+ ++.++.+.++. .++....|. +++|+. +.+|+|
T Consensus 182 ------------------------~~~~~~l~~~l~~~GV~v~~~~~v~~i~--~~~~~~~v~---~~dG~~--i~~D~V 230 (785)
T TIGR02374 182 ------------------------QTAGRLLQRELEQKGLTFLLEKDTVEIV--GATKADRIR---FKDGSS--LEADLI 230 (785)
T ss_pred ------------------------HHHHHHHHHHHHHcCCEEEeCCceEEEE--cCCceEEEE---ECCCCE--EEcCEE
Confidence 01112222222 2477 89999998886 333333444 567875 899999
Q ss_pred EeecCCccc
Q 035933 165 VAADGSRSS 173 (405)
Q Consensus 165 V~AdG~~S~ 173 (405)
|.|.|....
T Consensus 231 i~a~G~~Pn 239 (785)
T TIGR02374 231 VMAAGIRPN 239 (785)
T ss_pred EECCCCCcC
Confidence 999998754
No 298
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.83 E-value=0.00015 Score=69.56 Aligned_cols=100 Identities=13% Similarity=0.082 Sum_probs=69.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . +.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------~--~d-------------------------------- 206 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------S--FD-------------------------------- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------c--cC--------------------------------
Confidence 6899999999999999999999999999999865311 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+...+.+.+ ..|+ ++.++++.+++.+.+ ..+.++ +++|+ ..+.+|.||
T Consensus 207 -----------------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~-~~~~v~---~~~g~-~~i~~D~vi 258 (450)
T TIGR01421 207 -----------------------SMISETITEEYEKEGINVHKLSKPVKVEKTVE-GKLVIH---FEDGK-SIDDVDELI 258 (450)
T ss_pred -----------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC-ceEEEE---ECCCc-EEEEcCEEE
Confidence 11112222222 2477 889999999974322 234454 44553 248999999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 259 ~a~G~~pn~~ 268 (450)
T TIGR01421 259 WAIGRKPNTK 268 (450)
T ss_pred EeeCCCcCcc
Confidence 9999887654
No 299
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.81 E-value=2.5e-05 Score=78.22 Aligned_cols=36 Identities=31% Similarity=0.492 Sum_probs=34.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 579999999999999999999999999999999865
No 300
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.81 E-value=2.4e-05 Score=77.71 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=32.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+|||+||||||+|..+|..+++.|.+|+|||+.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3689999999999999999999999999999975
No 301
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.81 E-value=3e-05 Score=63.45 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=33.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGPPT 44 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~~~ 44 (405)
.||+|||||.|||++|+..+++ .++|.|||..-.|..
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 6999999999999999999965 689999999988744
No 302
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.80 E-value=2.8e-05 Score=71.61 Aligned_cols=39 Identities=31% Similarity=0.530 Sum_probs=33.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~~~~ 44 (405)
...+|||||||.||++||..|-+.| .+|+|+|..+....
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 4578999999999999999999776 58999999987643
No 303
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.77 E-value=0.00023 Score=68.03 Aligned_cols=35 Identities=31% Similarity=0.511 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 36899999999999999999999999999998765
No 304
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=2.5e-05 Score=73.94 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=34.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..+|+|||||||||++|..|++.|++|+|+|+.+.+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 379999999999999999999999999999999875
No 305
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.77 E-value=0.00038 Score=68.02 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=66.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.... .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------------------------~----------------- 390 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------------------------D----------------- 390 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------------------------h-----------------
Confidence 35999999999999999999999999999997643200 0
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeE-EEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTV-NVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v-~v~~~~~~~g~~~~~~~d~v 164 (405)
..+.+.|.+ ..|+ +++++.+..+. .++..+ .|++.+..+|+..++.+|.|
T Consensus 391 ------------------------~~l~~~l~~--~~gV~i~~~~~v~~i~--~~~~~v~~v~~~~~~~~~~~~i~~D~v 442 (515)
T TIGR03140 391 ------------------------KVLQDKLKS--LPNVDILTSAQTTEIV--GDGDKVTGIRYQDRNSGEEKQLDLDGV 442 (515)
T ss_pred ------------------------HHHHHHHhc--CCCCEEEECCeeEEEE--cCCCEEEEEEEEECCCCcEEEEEcCEE
Confidence 001112211 1477 88999998886 332333 35544444455556899999
Q ss_pred EeecCCcc
Q 035933 165 VAADGSRS 172 (405)
Q Consensus 165 V~AdG~~S 172 (405)
|.|.|...
T Consensus 443 i~a~G~~P 450 (515)
T TIGR03140 443 FVQIGLVP 450 (515)
T ss_pred EEEeCCcC
Confidence 99999654
No 306
>PRK14694 putative mercuric reductase; Provisional
Probab=97.76 E-value=0.00031 Score=67.95 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=65.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||++|+-+|..|++.|.+|+++++.... .. ..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l------~~---~~------------------------------- 217 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVL------SQ---ED------------------------------- 217 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC------CC---CC-------------------------------
Confidence 368999999999999999999999999999864211 00 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+...+.+.+ +.|+ ++.++++..++. ++..+.+. ++++ . +++|.|
T Consensus 218 ------------------------~~~~~~l~~~l~~~GI~v~~~~~v~~i~~--~~~~~~v~---~~~~-~--i~~D~v 265 (468)
T PRK14694 218 ------------------------PAVGEAIEAAFRREGIEVLKQTQASEVDY--NGREFILE---TNAG-T--LRAEQL 265 (468)
T ss_pred ------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCCEEEEE---ECCC-E--EEeCEE
Confidence 01112222222 2477 889999999874 33344444 3333 3 899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|......
T Consensus 266 i~a~G~~pn~~ 276 (468)
T PRK14694 266 LVATGRTPNTE 276 (468)
T ss_pred EEccCCCCCcC
Confidence 99999987653
No 307
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.75 E-value=0.00026 Score=68.04 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 36899999999999999999999999999988754
No 308
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=0.00027 Score=67.79 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... ...
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------------~~~------------- 198 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP--------------------------RED------------- 198 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC--------------------------CcC-------------
Confidence 35899999999999999999999999999999754210 000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+...|.+.+ +.|+ ++++++|.+++.+ +..++++ .++++ +.+|.|
T Consensus 199 ------------------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~--~~~v~v~---~~~g~---i~~D~v 246 (441)
T PRK08010 199 ------------------------RDIADNIATILRDQGVDIILNAHVERISHH--ENQVQVH---SEHAQ---LAVDAL 246 (441)
T ss_pred ------------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEE---EcCCe---EEeCEE
Confidence 01112223333 3477 8899999999743 3345554 33443 789999
Q ss_pred EeecCCcccc
Q 035933 165 VAADGSRSSV 174 (405)
Q Consensus 165 V~AdG~~S~v 174 (405)
|.|.|.....
T Consensus 247 l~a~G~~pn~ 256 (441)
T PRK08010 247 LIASGRQPAT 256 (441)
T ss_pred EEeecCCcCC
Confidence 9999988765
No 309
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.75 E-value=0.00072 Score=61.21 Aligned_cols=98 Identities=19% Similarity=0.156 Sum_probs=66.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||+|++|+-+|..|++.+.+|+++++.+... ..
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~----------~~------------------------------- 179 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR----------AE------------------------------- 179 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC----------cC-------------------------------
Confidence 4689999999999999999999999999999864310 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+.+.|.+ ..++ +++++++.+++. ++....+++.+..+|+..++.+|.||
T Consensus 180 ------------------------~~~~~~l~~--~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 180 ------------------------KILLDRLRK--NPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred ------------------------HHHHHHHHh--CCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEE
Confidence 011112221 1367 888999999873 33323344333345655679999999
Q ss_pred eecCCccc
Q 035933 166 AADGSRSS 173 (405)
Q Consensus 166 ~AdG~~S~ 173 (405)
.|+|....
T Consensus 232 ~a~G~~~~ 239 (300)
T TIGR01292 232 IAIGHEPN 239 (300)
T ss_pred EeeCCCCC
Confidence 99996543
No 310
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.75 E-value=3.2e-05 Score=75.63 Aligned_cols=41 Identities=34% Similarity=0.322 Sum_probs=36.7
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|+.+.+++|+||||+|.+|..+|..|+..|++|+|+|+...
T Consensus 1 ~~~~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 1 MSEMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred CCcccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 44556789999999999999999999999999999999953
No 311
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00068 Score=59.78 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcc---eeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAG---IALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~---~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
-+||.+|||||.+||+||...+..|.+|.++|--.....+..+|-| .....=-.++|.+..+..+.+.+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da------- 90 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDA------- 90 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHH-------
Confidence 3689999999999999999999999999999854321111112221 111111234555543322222211
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCC-c--e-EEe-cceEEEEEEe---cCCCeEEEEEeecCCC
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPV-E--I-VFW-GHLYLTFCIS---HDKSTVNVKAKNLRTD 154 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~-~~~v~~i~~~---~~~~~v~v~~~~~~~g 154 (405)
...-|+... ...-.++..+.+..++++.. + - +.. +.+|.-+.-- -+...+..+ ..+|
T Consensus 91 ~kyGW~~~e------------~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at---~~~g 155 (503)
T KOG4716|consen 91 RKYGWNVDE------------QKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKAT---NKKG 155 (503)
T ss_pred HhhCCCCcc------------ccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEe---cCCC
Confidence 111111111 00113446667777776643 1 1 111 2223222100 123344444 4566
Q ss_pred ceeEEeeeEEEeecCCcc
Q 035933 155 VIIDVVGDLLVAADGSRS 172 (405)
Q Consensus 155 ~~~~~~~d~vV~AdG~~S 172 (405)
+...+.|+.+|.|+|.+-
T Consensus 156 k~~~~ta~~fvIatG~RP 173 (503)
T KOG4716|consen 156 KERFLTAENFVIATGLRP 173 (503)
T ss_pred ceEEeecceEEEEecCCC
Confidence 666789999999999765
No 312
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=9.8e-05 Score=61.06 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||.|||+-.+|+++++..++.++||---.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~ 42 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA 42 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeec
Confidence 45999999999999999999999999999996543
No 313
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.71 E-value=3.6e-05 Score=67.92 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
...+|+|||+|+|||+||+.|+++ .+|++||.......
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 457999999999999999999987 79999999876543
No 314
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.70 E-value=4.6e-05 Score=75.35 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..+|+||||||+||++|..|++.|++|+|+|+.+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 469999999999999999999999999999998764
No 315
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.69 E-value=5.1e-05 Score=73.41 Aligned_cols=36 Identities=33% Similarity=0.418 Sum_probs=33.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+||||||||+++|..|++.|++|+|||+.+.+
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 369999999999999999999999999999998764
No 316
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.68 E-value=0.00053 Score=68.31 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 5899999999999999999999999999999865
No 317
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.67 E-value=0.00045 Score=67.22 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=66.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+++.... . . +.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-~------~--~d-------------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-R------G--FD-------------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-c------c--CC--------------------------------
Confidence 58999999999999999999999999999863211 0 0 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+.+.+.+.+ ..|+ ++.++++..++..+ ..+.+. +.+|+. +.+|.||
T Consensus 222 -----------------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~---~~~g~~--i~~D~vl 271 (499)
T PTZ00052 222 -----------------------RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIKVL---FSDGTT--ELFDTVL 271 (499)
T ss_pred -----------------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEE---ECCCCE--EEcCEEE
Confidence 01112222222 2467 88899888887432 234554 446765 7899999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|....+.
T Consensus 272 ~a~G~~pn~~ 281 (499)
T PTZ00052 272 YATGRKPDIK 281 (499)
T ss_pred EeeCCCCCcc
Confidence 9999987654
No 318
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.67 E-value=5.6e-05 Score=67.50 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA--GWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~ 42 (405)
.+..|+|||+||||+++|..|-++ +++|.|+||.+.|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 456999999999999999999884 7999999999876
No 319
>PRK14727 putative mercuric reductase; Provisional
Probab=97.67 E-value=0.00044 Score=67.05 Aligned_cols=96 Identities=11% Similarity=0.076 Sum_probs=66.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+++.... .. +.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l------~~---~d-------------------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLL------FR---ED-------------------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCC------Cc---ch--------------------------------
Confidence 58999999999999999999999999999874211 00 00
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEE
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLV 165 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV 165 (405)
..+.+.|.+.+ +.|+ ++++++|..++.++ ..+.+. .++++ +.+|.||
T Consensus 228 -----------------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~~v~---~~~g~---i~aD~Vl 276 (479)
T PRK14727 228 -----------------------PLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGFVLT---TGHGE---LRAEKLL 276 (479)
T ss_pred -----------------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEEEEE---EcCCe---EEeCEEE
Confidence 01112222233 2477 88999999987433 345554 33442 7899999
Q ss_pred eecCCccccc
Q 035933 166 AADGSRSSVR 175 (405)
Q Consensus 166 ~AdG~~S~vr 175 (405)
.|.|......
T Consensus 277 vA~G~~pn~~ 286 (479)
T PRK14727 277 ISTGRHANTH 286 (479)
T ss_pred EccCCCCCcc
Confidence 9999988654
No 320
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.65 E-value=0.00043 Score=66.26 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=32.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+++.+.
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 5899999999999999999999999999999765
No 321
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.63 E-value=0.00059 Score=66.06 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=30.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 58999999999999999999999999999873
No 322
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.63 E-value=0.00054 Score=66.27 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=67.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH---cCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccc
Q 035933 7 KPKAIIVGGSIAGISCAKALIL---AGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQ 83 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~---~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (405)
..+|+|||||+.|+-+|..++. .|.+|+|+|+.+.+.. . +.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------~--~d---------------------------- 230 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------G--FD---------------------------- 230 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------c--cC----------------------------
Confidence 3689999999999999977654 4999999998865310 0 00
Q ss_pred cceecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 84 NRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
..+.+.+.+.+ +.|+ ++.++++.++..+++ ....+. +.+|+. +.+
T Consensus 231 ---------------------------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~-~~~~v~---~~~g~~--i~~ 277 (486)
T TIGR01423 231 ---------------------------STLRKELTKQLRANGINIMTNENPAKVTLNAD-GSKHVT---FESGKT--LDV 277 (486)
T ss_pred ---------------------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-ceEEEE---EcCCCE--EEc
Confidence 11122222223 2477 899999999875332 234444 345654 899
Q ss_pred eEEEeecCCccccc
Q 035933 162 DLLVAADGSRSSVR 175 (405)
Q Consensus 162 d~vV~AdG~~S~vr 175 (405)
|.||.|.|......
T Consensus 278 D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 278 DVVMMAIGRVPRTQ 291 (486)
T ss_pred CEEEEeeCCCcCcc
Confidence 99999999887654
No 323
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.63 E-value=6.6e-05 Score=68.14 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcE--EEEccCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDV--VVIEKTRGPP 43 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v--~i~E~~~~~~ 43 (405)
.++|+|||||++||++|++|++++.+| +|||..+...
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 479999999999999999999998765 5599998753
No 324
>PTZ00058 glutathione reductase; Provisional
Probab=97.63 E-value=0.00056 Score=67.05 Aligned_cols=101 Identities=8% Similarity=0.038 Sum_probs=68.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. . +.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------~--~d------------------------------- 277 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------K--FD------------------------------- 277 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------c--CC-------------------------------
Confidence 46899999999999999999999999999998764210 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
.++.+.+.+.+ +.|+ ++.++.+.+++.+++ ..+.+. ..++. .++++|.|
T Consensus 278 ------------------------~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~-~~v~v~---~~~~~-~~i~aD~V 328 (561)
T PTZ00058 278 ------------------------ETIINELENDMKKNNINIITHANVEEIEKVKE-KNLTIY---LSDGR-KYEHFDYV 328 (561)
T ss_pred ------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-CcEEEE---ECCCC-EEEECCEE
Confidence 11111222222 2477 889999999874322 234443 22333 24899999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|....+.
T Consensus 329 lvA~Gr~Pn~~ 339 (561)
T PTZ00058 329 IYCVGRSPNTE 339 (561)
T ss_pred EECcCCCCCcc
Confidence 99999876543
No 325
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.61 E-value=0.00096 Score=65.34 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.+.+|+|+++.+.... .
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~----------~------------------------------- 389 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA----------D------------------------------- 389 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc----------c-------------------------------
Confidence 36899999999999999999999999999998764210 0
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeE-EEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTV-NVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v-~v~~~~~~~g~~~~~~~d~v 164 (405)
..+.+.|.+ ..++ +++++.+.++.. +++.+ .+++++..+|+..++.+|.|
T Consensus 390 ------------------------~~l~~~l~~--~~gI~i~~~~~v~~i~~--~~g~v~~v~~~~~~~g~~~~i~~D~v 441 (517)
T PRK15317 390 ------------------------QVLQDKLRS--LPNVTIITNAQTTEVTG--DGDKVTGLTYKDRTTGEEHHLELEGV 441 (517)
T ss_pred ------------------------HHHHHHHhc--CCCcEEEECcEEEEEEc--CCCcEEEEEEEECCCCcEEEEEcCEE
Confidence 000111111 1367 889999999873 33333 35554445666667999999
Q ss_pred EeecCCcc
Q 035933 165 VAADGSRS 172 (405)
Q Consensus 165 V~AdG~~S 172 (405)
+.|.|...
T Consensus 442 ~~~~G~~p 449 (517)
T PRK15317 442 FVQIGLVP 449 (517)
T ss_pred EEeECCcc
Confidence 99999764
No 326
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.59 E-value=0.00061 Score=64.75 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=33.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.+|+|||||++|+.+|..|+++|++|+++|+.+.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 69999999999999999999999999999999875
No 327
>PLN03000 amine oxidase
Probab=97.59 E-value=9.1e-05 Score=74.75 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=34.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
..+|+|||||++|+.+|..|++.|++|+|+|++..+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG 221 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG 221 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence 57999999999999999999999999999999887543
No 328
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=97.58 E-value=0.0001 Score=64.30 Aligned_cols=107 Identities=24% Similarity=0.212 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CC-cEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA-GW-DVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQ 83 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~-g~-~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 83 (405)
+.++|+|||||.+|+..|..+.++ |- +|.|+|.....-. --++.+-..++.-|+.-..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyY----QPgfTLvGgGl~~l~~srr---------------- 97 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYY----QPGFTLVGGGLKSLDSSRR---------------- 97 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhccc----CcceEEeccchhhhhhccC----------------
Confidence 458999999999999999999875 44 8889997654211 1144444433332222110
Q ss_pred cceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeE
Q 035933 84 NRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDL 163 (405)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~ 163 (405)
-+.+.++.+..+...+|..++ ++.+.|. +.+|+. |.+|+
T Consensus 98 --------------------------------~~a~liP~~a~wi~ekv~~f~--P~~N~v~-----t~gg~e--IsYdy 136 (446)
T KOG3851|consen 98 --------------------------------KQASLIPKGATWIKEKVKEFN--PDKNTVV-----TRGGEE--ISYDY 136 (446)
T ss_pred --------------------------------cccccccCCcHHHHHHHHhcC--CCcCeEE-----ccCCcE--Eeeee
Confidence 011122334333345566665 5566665 457776 99999
Q ss_pred EEeecCCccc
Q 035933 164 LVAADGSRSS 173 (405)
Q Consensus 164 vV~AdG~~S~ 173 (405)
+|.|.|..=.
T Consensus 137 lviA~Giql~ 146 (446)
T KOG3851|consen 137 LVIAMGIQLD 146 (446)
T ss_pred Eeeeeeceec
Confidence 9999998743
No 329
>PRK13748 putative mercuric reductase; Provisional
Probab=97.56 E-value=0.00069 Score=67.22 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=30.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 68999999999999999999999999999974
No 330
>PRK13984 putative oxidoreductase; Provisional
Probab=97.55 E-value=9.8e-05 Score=73.74 Aligned_cols=37 Identities=38% Similarity=0.537 Sum_probs=34.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+..+|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4578999999999999999999999999999998864
No 331
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.54 E-value=0.0005 Score=61.68 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=79.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccccccee
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRAV 87 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (405)
.+++|||||..||-.+.--.+.|-+|+++|-.+.. +.. +.+...
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i------~~~--mD~Eis---------------------------- 255 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQI------GGV--MDGEIS---------------------------- 255 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhh------ccc--cCHHHH----------------------------
Confidence 58999999999999999999999999999987763 111 111000
Q ss_pred cCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEe
Q 035933 88 DREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVA 166 (405)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~ 166 (405)
..+++.|.+ +|+ +..+++|...+.+.++ .+.+++.+-+++++.+++||.+.+
T Consensus 256 -----------------------k~~qr~L~k---QgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 256 -----------------------KAFQRVLQK---QGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLV 308 (506)
T ss_pred -----------------------HHHHHHHHh---cCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEE
Confidence 233344444 466 8899999999865554 788887778888888899999999
Q ss_pred ecCCccccc
Q 035933 167 ADGSRSSVR 175 (405)
Q Consensus 167 AdG~~S~vr 175 (405)
|.|+.-.+.
T Consensus 309 siGRrP~t~ 317 (506)
T KOG1335|consen 309 SIGRRPFTE 317 (506)
T ss_pred EccCccccc
Confidence 999775543
No 332
>PLN02976 amine oxidase
Probab=97.49 E-value=0.00013 Score=76.51 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=34.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPP 43 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~ 43 (405)
.++|+||||||+|+++|+.|++.|++|+|||+++.+.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCC
Confidence 4799999999999999999999999999999987653
No 333
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.0012 Score=61.03 Aligned_cols=147 Identities=11% Similarity=0.069 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCC-------CCcceeeCccHHHHHHHhccC-hhhhhcccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNP-------TGAGIALHLLSQKIVKSWLHQ-PDLLHNITL 77 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~-------~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~~ 77 (405)
..|||+|||||=||+-+|...++.|.+.+++-.+-..-...+ .|.|..+. -.+.++.. ....+..+.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~Lmr-----EVDALdGl~~rvcD~s~v 101 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMR-----EVDALDGLCSRVCDQSGV 101 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeee-----eehhhcchHhhhhhhhhh
Confidence 458999999999999999999999999999876643211000 12222211 12222110 011111111
Q ss_pred CccccccceecCccceeeeecccCCcccccccHHHHHHHHHhcCC--Cce-EEecceEEEEEE-ecCCCeEEEEEeecCC
Q 035933 78 PLTIDQNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLP--VEI-VFWGHLYLTFCI-SHDKSTVNVKAKNLRT 153 (405)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~i~~-~~~~~~v~v~~~~~~~ 153 (405)
... ......+.. .-.+...++|..+...+++.+. .+. |+ +..|.++.. ++++..-++....+.+
T Consensus 102 q~k--~LNrs~GPA---------Vwg~RAQiDR~lYkk~MQkei~st~nL~ir-e~~V~dliv~~~~~~~~~~~gV~l~d 169 (679)
T KOG2311|consen 102 QYK--VLNRSKGPA---------VWGLRAQIDRKLYKKNMQKEISSTPNLEIR-EGAVADLIVEDPDDGHCVVSGVVLVD 169 (679)
T ss_pred hHH--HhhccCCCc---------ccChHHhhhHHHHHHHHHHHhccCCcchhh-hhhhhheeeccCCCCceEEEEEEEec
Confidence 000 000000000 0012234777777777777763 344 54 344555433 3332222222223668
Q ss_pred CceeEEeeeEEEeecCCc
Q 035933 154 DVIIDVVGDLLVAADGSR 171 (405)
Q Consensus 154 g~~~~~~~d~vV~AdG~~ 171 (405)
|+. +.++-||..+|..
T Consensus 170 gt~--v~a~~VilTTGTF 185 (679)
T KOG2311|consen 170 GTV--VYAESVILTTGTF 185 (679)
T ss_pred CcE--eccceEEEeeccc
Confidence 887 8999999999976
No 334
>PRK10262 thioredoxin reductase; Provisional
Probab=97.42 E-value=0.0037 Score=57.26 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 46899999999999999999999999999998753
No 335
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.39 E-value=0.00014 Score=71.53 Aligned_cols=33 Identities=33% Similarity=0.327 Sum_probs=31.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAG-WDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~ 41 (405)
|+||||||+||+.+|..|++.| ++|+|+|+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 7999999999999999999998 79999999864
No 336
>PLN02546 glutathione reductase
Probab=97.38 E-value=0.0018 Score=63.52 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=68.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.... . +.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------~--~d------------------------------- 292 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------G--FD------------------------------- 292 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------c--cC-------------------------------
Confidence 46999999999999999999999999999998764210 0 00
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+...+.+.+ ..|+ ++.++++.++.... +..+.+. ..+++. ..+|.|
T Consensus 293 ------------------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~-~g~v~v~---~~~g~~--~~~D~V 342 (558)
T PLN02546 293 ------------------------EEVRDFVAEQMSLRGIEFHTEESPQAIIKSA-DGSLSLK---TNKGTV--EGFSHV 342 (558)
T ss_pred ------------------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcC-CCEEEEE---ECCeEE--EecCEE
Confidence 11122232333 3477 88999999987432 3344443 334432 458999
Q ss_pred EeecCCccccc
Q 035933 165 VAADGSRSSVR 175 (405)
Q Consensus 165 V~AdG~~S~vr 175 (405)
|.|.|......
T Consensus 343 iva~G~~Pnt~ 353 (558)
T PLN02546 343 MFATGRKPNTK 353 (558)
T ss_pred EEeeccccCCC
Confidence 99999987664
No 337
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.37 E-value=0.0015 Score=60.54 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCccccccce
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTIDQNRA 86 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (405)
...|+++|+|..|+-+|..|...+.+|+++++.+.+-. ++..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-------------------~lf~------------------- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-------------------RLFG------------------- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-------------------hhhh-------------------
Confidence 46799999999999999999999999999999876411 1000
Q ss_pred ecCccceeeeecccCCcccccccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEE
Q 035933 87 VDREKNICRVLARDENFNYLQAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLL 164 (405)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~v 164 (405)
..+.+.+.+.+ ..++ +..++.+.+++.++++....|. +.+|.. +.+|+|
T Consensus 255 ------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~---l~dg~~--l~adlv 305 (478)
T KOG1336|consen 255 ------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK---LKDGKT--LEADLV 305 (478)
T ss_pred ------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE---eccCCE--eccCeE
Confidence 11122222222 2477 9999999999876665555665 778887 999999
Q ss_pred EeecCCcccc
Q 035933 165 VAADGSRSSV 174 (405)
Q Consensus 165 V~AdG~~S~v 174 (405)
|...|..+.+
T Consensus 306 v~GiG~~p~t 315 (478)
T KOG1336|consen 306 VVGIGIKPNT 315 (478)
T ss_pred EEeecccccc
Confidence 9999998765
No 338
>PLN02785 Protein HOTHEAD
Probab=97.36 E-value=0.00021 Score=70.48 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=32.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..||++|||||.||+.+|..|++ +.+|+|+|+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 35999999999999999999999 699999999974
No 339
>PRK12831 putative oxidoreductase; Provisional
Probab=97.36 E-value=0.0013 Score=63.26 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||||..|+-+|..|.+.|.+|++++++..
T Consensus 281 gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 281 GKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 36999999999999999999999999999998753
No 340
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.35 E-value=0.0018 Score=61.75 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=29.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHH--------------cCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALIL--------------AGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~--------------~g~~v~i~E~~~~ 41 (405)
.+|+|||||++|+-+|..|+. .+.+|+|+|+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 389999999999999998875 3688999988765
No 341
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00021 Score=72.11 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=33.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
++|+|||.|||||+||-.|.|.|+.|+||||...+
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRV 1820 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCc
Confidence 69999999999999999999999999999999874
No 342
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.28 E-value=0.0021 Score=61.75 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 6899999999999999999999999999998753
No 343
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.28 E-value=0.0031 Score=58.61 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCc-EEEEccCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWD-VVVIEKTR 40 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~ 40 (405)
.+|+|||+|+.|+-+|..|.+.|.+ |+|++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999997 99999864
No 344
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00026 Score=62.13 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+...|-|||||.||.-+|+.++++|++|.++|.++.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 356899999999999999999999999999998875
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.06 E-value=0.0084 Score=59.26 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 46899999999999999999999999999998753
No 346
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.06 E-value=0.012 Score=55.44 Aligned_cols=37 Identities=35% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc----CCcEEEEccCCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILA----GWDVVVIEKTRGPP 43 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~----g~~v~i~E~~~~~~ 43 (405)
++++=|||+|+|+|++|.+|-|. |-+|.|+|+.+.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 46788999999999999999985 66999999988653
No 347
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.005 Score=54.77 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
..+|-+|||||-.|++.|+..+.+|.+|.|+|-.-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 56999999999999999999999999999999863
No 348
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.81 E-value=0.0017 Score=52.56 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=30.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+|+|+|||..|.++|..|+++|.+|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999975
No 349
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.81 E-value=0.0012 Score=63.57 Aligned_cols=37 Identities=32% Similarity=0.525 Sum_probs=34.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA-GWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~-g~~v~i~E~~~~~ 42 (405)
..||.+|||||.||+.+|..|++. .++|+|+|+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 469999999999999999999996 7999999999876
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.77 E-value=0.0089 Score=61.43 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCc-EEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWD-VVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~~ 41 (405)
.+|+|||||..|+-+|..+.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 6899999999999999999999997 999998754
No 351
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.77 E-value=0.0098 Score=57.37 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=31.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
..+|+|||||..|+-+|..|.+.|. +|++++++..
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4699999999999999999999998 8999998653
No 352
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.75 E-value=0.0085 Score=60.36 Aligned_cols=35 Identities=20% Similarity=0.412 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
..+|+|||||..|+-+|..|.+.|. +|+|+++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 3689999999999999999999997 6999988753
No 353
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.68 E-value=0.0079 Score=55.88 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=32.8
Q ss_pred Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCc-cccccc
Q 035933 123 VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSR-SSVRQT 177 (405)
Q Consensus 123 ~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~-S~vr~~ 177 (405)
.|| +..++.|++++ ++ .+++ ++|+. ++.++.+|=|.|.. |.+-+.
T Consensus 222 ~GV~v~l~~~Vt~v~--~~--~v~~-----~~g~~-~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 222 LGVEVLLGTPVTEVT--PD--GVTL-----KDGEE-EIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CCCEEEcCCceEEEC--CC--cEEE-----ccCCe-eEecCEEEEcCCCcCChhhhh
Confidence 488 99999999987 33 4553 35553 59999999999985 444444
No 354
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.66 E-value=0.0099 Score=55.05 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=34.7
Q ss_pred ccEEEEccccccCCCCCchhhhhHHHHHHHHHHHHHhh
Q 035933 318 DNVVLIGDAAHPITPHCARSTNMAIADAAVLGKCLERW 355 (405)
Q Consensus 318 ~~v~lvGDAah~~~P~~G~G~~~al~da~~la~~l~~~ 355 (405)
+++.++|...-.--|.+|.=+..|+..++.++..+..+
T Consensus 337 pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~ 374 (376)
T TIGR03862 337 PGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSW 374 (376)
T ss_pred CCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999888999999999999999999888764
No 355
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.58 E-value=0.0034 Score=60.49 Aligned_cols=36 Identities=25% Similarity=0.506 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
++.++|+|+|+|.+|+.+|..|++.|++|+++|+..
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 456899999999999999999999999999999975
No 356
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.57 E-value=0.0028 Score=52.48 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=29.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.|||||.-|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999999765
No 357
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.54 E-value=0.017 Score=58.28 Aligned_cols=34 Identities=15% Similarity=0.398 Sum_probs=30.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
.+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 589999999999999999999997 6999988754
No 358
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.54 E-value=0.004 Score=56.78 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
|++++|+|||+|..|.++|..|++.|.+|+++.|..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 445689999999999999999999999999998864
No 359
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.0029 Score=61.06 Aligned_cols=34 Identities=35% Similarity=0.664 Sum_probs=31.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
+|+|||+|++|+++|..|.++|++|+++|++..+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999988764
No 360
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.52 E-value=0.0022 Score=58.94 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=33.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
.++|++|||+|.-||.+|..|++.|.+|.++|++.
T Consensus 13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrh 47 (561)
T KOG4254|consen 13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRH 47 (561)
T ss_pred cccceEEecCCccchhHHHHHHhcCcceEEEEEee
Confidence 47999999999999999999999999999999994
No 361
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0033 Score=54.11 Aligned_cols=61 Identities=20% Similarity=0.204 Sum_probs=44.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCCC--C--CCCcceeeCccHHHHHHHhccC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPTG--N--PTGAGIALHLLSQKIVKSWLHQ 68 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~~--~--~~~~~~~l~~~~~~~l~~~~~~ 68 (405)
++|+|||+|..|..+|..|.+.|++|+++|+.+..-.. . .....+.....-...|++.|..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence 37999999999999999999999999999998763211 1 1122344455556677777663
No 362
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.52 E-value=0.0042 Score=56.26 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=35.3
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|..++.-.+|+|||+|.-|...|..++..|++|+++|..+.
T Consensus 1 ~~~~~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 1 MAVITDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44444446899999999999999999999999999999865
No 363
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.51 E-value=0.15 Score=46.85 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=43.3
Q ss_pred cccHHHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeE-EEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 107 QAHWTDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTV-NVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v-~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
.++-..+...|.+.+ +.|+ ++.+++|.++... ++.+ .|. .++| . +.||.||.|+|.++.-
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~---~~~g-~--~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIV---TPSG-D--VQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEE---cCCC-E--EECCEEEEcCChhhhh
Confidence 355567777777766 4677 9999999999853 3333 344 4455 3 8999999999999853
No 364
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.51 E-value=0.022 Score=53.21 Aligned_cols=29 Identities=38% Similarity=0.516 Sum_probs=24.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHH----cC--CcEEEE
Q 035933 8 PKAIIVGGSIAGISCAKALIL----AG--WDVVVI 36 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~----~g--~~v~i~ 36 (405)
.+|+|||||++|+-+|..|++ +| .+|+|+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li 180 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI 180 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 589999999999999999985 34 378777
No 365
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.51 E-value=0.02 Score=55.30 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=31.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
..+|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence 3689999999999999999999996 7999998764
No 366
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.50 E-value=0.14 Score=48.23 Aligned_cols=60 Identities=7% Similarity=0.089 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 107 QAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 107 ~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.++-..+...|.+.+..|+ +++++.|.+++.+ ++.+.|+ +.+|.. +.+|.||.|+|.++.
T Consensus 131 ~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~--~~~~~v~---t~~g~~--~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGIRLTLHFNTEITSLERD--GEGWQLL---DANGEV--IAASVVVLANGAQAG 191 (381)
T ss_pred ccChHHHHHHHHhccCCCcEEEeCCEEEEEEEc--CCeEEEE---eCCCCE--EEcCEEEEcCCcccc
Confidence 3566777888888775588 9999999999853 3456665 566765 789999999999985
No 367
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.49 E-value=0.0039 Score=60.60 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||+|++|+.+|..|+++|++|+++|+++.
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 46899999999999999999999999999997753
No 368
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.47 E-value=0.0039 Score=56.23 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|+..+|+|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 3446899999999999999999999999999998754
No 369
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.45 E-value=0.024 Score=59.27 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=31.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||||..|+=+|..+.+.|.+|+++.+++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 6899999999999999999999999999988743
No 370
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.42 E-value=0.021 Score=53.19 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=28.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW--DVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~ 40 (405)
...|+|||+||+|..|+..+.+.|. +++++-+..
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~ 109 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY 109 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccc
Confidence 5789999999999999999999886 555555443
No 371
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.37 E-value=0.0049 Score=55.25 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=34.4
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|++.+ .+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 1 ~~~~~--~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAI--QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCCCc--cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 55433 4899999999999999999999999999999876
No 372
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.36 E-value=0.0078 Score=48.52 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIE 37 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E 37 (405)
...+|+|||||..|..-|..|.+.|.+|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 56799999999999999999999999999994
No 373
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.31 E-value=0.04 Score=50.64 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++++|+|+|.|.+|.+++..|-..-++|+|+..+..
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 568999999999999999999999999999998765
No 374
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.29 E-value=0.0047 Score=51.32 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=27.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|+|||.|-.|+.+|..|++.|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 3799999999999999999999999999998864
No 375
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.29 E-value=0.015 Score=56.88 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+.++|+|||+|.+|.=.|..|++...+|.+.=|+..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 347999999999999999999999999999888765
No 376
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.27 E-value=0.022 Score=52.36 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcc
Q 035933 115 GLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRS 172 (405)
Q Consensus 115 ~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S 172 (405)
++-.+.. +.++ +..++.|..++ +. .+.+. ..+|+..++.+-++|-|+|...
T Consensus 277 ~yae~~f~~~~I~~~~~t~Vk~V~--~~--~I~~~---~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 277 EYAENQFVRDGIDLDTGTMVKKVT--EK--TIHAK---TKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred HHHHHHhhhccceeecccEEEeec--Cc--EEEEE---cCCCceeeecceEEEecCCCCC
Confidence 3333333 3577 88899998876 22 35544 4588888899999999999864
No 377
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.23 E-value=0.0076 Score=48.38 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=29.6
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 10 AIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
|+|+|+|..|+..|..|++.|++|+++-|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7999999999999999999999999999875
No 378
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.21 E-value=0.047 Score=54.12 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHhcC-CCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 111 TDLHGLIYNTL-PVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 111 ~~l~~~L~~~~-~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
..+.+.|.+.+ +.++ ++.++.++++..++++.-+-+...+..+|+...+.++.||.|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 45667777766 4578 9999999998754333323344334567887778999999999998854
No 379
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.18 E-value=0.041 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=28.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~ 40 (405)
..+|+|||||..|+-+|..+.+.|. +|++++...
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 3689999999999999999888886 788666544
No 380
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.09 E-value=0.012 Score=49.84 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
...+|+|||||.+|...+..|.+.|.+|+|+....
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45799999999999999999999999999998653
No 381
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.08 E-value=0.0055 Score=45.55 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
.+..+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 356899999999999999999999999999998873
No 382
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.06 E-value=0.025 Score=59.91 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~ 40 (405)
..+|+|||+|+.|+-+|..|++.|. .|+|+|..+
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~ 351 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA 351 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence 4689999999999999999999996 578998764
No 383
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.05 E-value=0.012 Score=53.60 Aligned_cols=39 Identities=21% Similarity=0.339 Sum_probs=34.3
Q ss_pred CCCCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCCC
Q 035933 4 RMRKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRGP 42 (405)
Q Consensus 4 ~~~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~~ 42 (405)
|.+..+|+|||||-.|..+|..|+..|+ +++++|..+..
T Consensus 3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 3 MIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 4456799999999999999999999996 99999997763
No 384
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.03 E-value=0.0097 Score=53.96 Aligned_cols=33 Identities=30% Similarity=0.237 Sum_probs=31.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999964
No 385
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.99 E-value=0.0085 Score=54.47 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=31.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.|||+|.-|...|..|+++|++|+++|+.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 799999999999999999999999999999864
No 386
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.98 E-value=0.01 Score=53.36 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998754
No 387
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.93 E-value=0.01 Score=55.98 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..+||+|+|.|..-+.+|..|++.|.+|+.+|+++..
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yY 39 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYY 39 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCc
Confidence 5699999999999999999999999999999999874
No 388
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.91 E-value=0.072 Score=55.67 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=30.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc-CC-cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILA-GW-DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~-g~-~v~i~E~~~~ 41 (405)
..+|+|||||..|+-+|..+.+. |. +|++++++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~ 702 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 702 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence 46899999999999999998886 86 7999998753
No 389
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.83 E-value=0.13 Score=47.14 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=42.2
Q ss_pred Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccccccc
Q 035933 123 VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 123 ~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
..+ +.-+++|.+++...+ +.+.+.++...+|+..+++.|.||.|+|-+-.+-..+
T Consensus 291 ~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 356 888999999984333 3377877777788888899999999999985555443
No 390
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.80 E-value=0.017 Score=48.73 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
....+|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 35679999999999999999999999999999753
No 391
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.76 E-value=0.075 Score=55.39 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHc-C-CcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILA-G-WDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~-g-~~v~i~E~~~~ 41 (405)
-.+|+|||||..|+-+|..+.+. | .+|+|+.+++.
T Consensus 668 GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 668 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred CCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 36899999999999999998887 5 48999998753
No 392
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.75 E-value=0.072 Score=56.32 Aligned_cols=35 Identities=11% Similarity=0.274 Sum_probs=29.8
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWD-VVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~~ 41 (405)
..+|+|||||..|+=+|..+.+.|.+ |+++.++..
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~ 606 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSE 606 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCc
Confidence 36999999999999999999999985 777776643
No 393
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.74 E-value=0.014 Score=52.37 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||+|..|...|..|++.|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 4799999999999999999999999999998765
No 394
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=95.73 E-value=0.035 Score=50.77 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=31.8
Q ss_pred Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCc
Q 035933 123 VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSR 171 (405)
Q Consensus 123 ~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~ 171 (405)
.|+ ++-+..|.++.... ..+.++ ++||.+ ++.|+||+|.|-.
T Consensus 406 ~GV~V~pna~v~sv~~~~--~nl~lk---L~dG~~--l~tD~vVvavG~e 448 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCC--KNLVLK---LSDGSE--LRTDLVVVAVGEE 448 (659)
T ss_pred cCceeccchhhhhhhhhc--cceEEE---ecCCCe--eeeeeEEEEecCC
Confidence 467 88888888876433 345555 779987 9999999999974
No 395
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.71 E-value=0.015 Score=52.48 Aligned_cols=34 Identities=21% Similarity=0.427 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 396
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.69 E-value=0.019 Score=47.02 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
...+|+|+|+|.+|..||..|...|.+|+++|....
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~ 54 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE 54 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence 347999999999999999999999999999998753
No 397
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.63 E-value=0.015 Score=55.13 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998765
No 398
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.62 E-value=0.033 Score=54.80 Aligned_cols=35 Identities=31% Similarity=0.574 Sum_probs=31.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
...-+|||||.-|+=+|..|...|.+|.|++-.+.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~ 179 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT 179 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeecch
Confidence 45679999999999999999999999999987754
No 399
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.017 Score=56.09 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|+++..-.+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 44443457899999999999999999999999999999876
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.57 E-value=0.018 Score=51.96 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|.|||+|.-|...|..|++.|++|+++|+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 5799999999999999999999999999998764
No 401
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.50 E-value=0.017 Score=52.34 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+|+|||+|..|.++|..|++.|.+|++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999854
No 402
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.49 E-value=0.1 Score=52.59 Aligned_cols=35 Identities=14% Similarity=0.307 Sum_probs=30.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
..+|+|||+|..|+-+|..+.+.|. +|+++++++.
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 3689999999999999999889985 7999998754
No 403
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.47 E-value=0.023 Score=52.16 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.|||+|.-|...|..|++.|++|++++|.+.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 799999999999999999999999999999643
No 404
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.46 E-value=0.02 Score=52.04 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=29.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEcc
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEK 38 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~ 38 (405)
+|+|||+|..|.++|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 405
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.39 E-value=0.02 Score=51.55 Aligned_cols=34 Identities=18% Similarity=0.456 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|||+|.-|...|..|++.|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 3799999999999999999999999999998764
No 406
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.38 E-value=0.7 Score=45.13 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=34.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
+||+|||||++||++|..|+++|++|+|+||+..+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 37 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG 37 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5899999999999999999999999999999987643
No 407
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.36 E-value=0.023 Score=52.49 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+|+|||+|..|...|..|++.|++|++++|..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 69999999999999999999999999999853
No 408
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.33 E-value=0.021 Score=44.74 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.2
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 10 AIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|+|||+.+.+++..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998865
No 409
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.33 E-value=0.023 Score=44.59 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
+.+|+|+|+|-.|..+|..|++.|+ +++|+|...-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 4689999999999999999999999 7999998753
No 410
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.32 E-value=0.039 Score=43.30 Aligned_cols=35 Identities=20% Similarity=0.388 Sum_probs=31.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc-EEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWD-VVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~-v~i~E~~~ 40 (405)
+..+|+|||+|-+|-+++..|.+.|.+ |+|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 467999999999999999999999997 99999864
No 411
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.28 E-value=0.032 Score=53.68 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+..++|+|+|+|.+|+++|..|+++|++|+++|..+.
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3456899999999999999999999999999997665
No 412
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.27 E-value=0.021 Score=55.04 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|+|+|++|+.++..++..|.+|.++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46999999999999999999999999999998864
No 413
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.25 E-value=0.027 Score=52.44 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
..+|+|||+|.+|..+|..|.+.|.+|+++++++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4689999999999999999999999999999864
No 414
>PRK04148 hypothetical protein; Provisional
Probab=95.24 E-value=0.021 Score=44.18 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 679999999 999999999999999999998865
No 415
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.22 E-value=0.028 Score=42.71 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=29.0
Q ss_pred EEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 10 AIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|+|+|.|..|..++..|.+.+++|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999864
No 416
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.19 E-value=0.03 Score=51.02 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=31.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|.|||+|.-|...|..|++.|++|+++|+...
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 5799999999999999999999999999998654
No 417
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.19 E-value=0.04 Score=43.57 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.3
Q ss_pred CcEEEEcC-CHHHHHHHHHHHHcCC--cEEEEccCCC
Q 035933 8 PKAIIVGG-SIAGISCAKALILAGW--DVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGa-G~aGl~~A~~L~~~g~--~v~i~E~~~~ 41 (405)
.+|+|||+ |..|.++|..|...++ ++.++|....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 38999999 9999999999999876 7999998853
No 418
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.16 E-value=0.66 Score=45.41 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccccccc
Q 035933 111 TDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTF 178 (405)
Q Consensus 111 ~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l 178 (405)
..+.+.|.+.++ .|+ +++++.|.+|..++ +..+.|+ +++|+. +.+|.||.|.+......+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~---~~~g~~--~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVH---LADGER--LDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEE---ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence 466777777764 477 99999999998643 3334454 556765 78999999999876665443
No 419
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.16 E-value=0.039 Score=44.93 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCCH-HHHHHHHHHHHcCCcEEEEccCC
Q 035933 5 MRKPKAIIVGGSI-AGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 5 ~~~~~V~IiGaG~-aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
...++|+|||+|- +|..+|..|.++|.+|+++.|..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3568999999996 79999999999999999999863
No 420
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15 E-value=0.032 Score=53.70 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+....|+|+|+|.+|.++|..|++.|++|++.|+...
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 3456899999999999999999999999999997653
No 421
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.09 E-value=0.032 Score=52.66 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=34.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
.++|+|+|-|-+|+++|..|.++|.+|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 679999999999999999999999999999988776
No 422
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.97 E-value=0.037 Score=50.22 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=30.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGW--DVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~ 41 (405)
+|.|||+|..|.++|+.|+.+|+ ++.++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 8999998764
No 423
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.97 E-value=0.044 Score=46.20 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~ 40 (405)
++.+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 56899999999999999999999999 699999874
No 424
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=94.96 E-value=0.034 Score=50.51 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=33.7
Q ss_pred CCCCCCCCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGGSIAGISCAKALILAGW--DVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~ 41 (405)
|+.++ ..+|+|||+|..|.++|..|.+.|+ +|.++++++.
T Consensus 1 ~~~~~-~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~ 42 (307)
T PRK07502 1 MSAPL-FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE 42 (307)
T ss_pred CCccC-CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 66664 3589999999999999999999985 8999988643
No 425
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.91 E-value=0.38 Score=46.51 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=20.4
Q ss_pred CcEEEEcCCHHHHHHHHHHHHc
Q 035933 8 PKAIIVGGSIAGISCAKALILA 29 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~ 29 (405)
.+|+|||+|..|+-+|..|.+.
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 6899999999999999998876
No 426
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.88 E-value=0.054 Score=49.23 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=31.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW--DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~ 41 (405)
..+|+|||+|-.|.++|+.|...|+ ++.|+|.+..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 4699999999999999999999998 7999998654
No 427
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.87 E-value=0.039 Score=51.76 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
-.+|+|+|+|+.|+.+|..++..|.+|+++|..+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 46999999999999999999999999999998754
No 428
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.81 E-value=0.041 Score=50.50 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=30.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+|.|||+|.-|.++|..|++.|.+|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999864
No 429
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.042 Score=53.12 Aligned_cols=36 Identities=11% Similarity=-0.055 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
...+|+|+|.|-+|.++|..|.++|.+|++.|.++.
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 356899999999999999999999999999997654
No 430
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.81 Score=41.36 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=33.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRGP 42 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~~ 42 (405)
..+|+|||||.+.+-.|+.|++-+-+|+++=|++..
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ 178 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF 178 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence 359999999999999999999999999999988764
No 431
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.70 E-value=0.053 Score=47.72 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
.+.+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 56899999999999999999999996 8999997754
No 432
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.54 E-value=0.051 Score=52.86 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3799999999999999999999999999999764
No 433
>PLN02676 polyamine oxidase
Probab=94.47 E-value=0.5 Score=45.96 Aligned_cols=58 Identities=9% Similarity=0.052 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCC-------ce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCcccc
Q 035933 110 WTDLHGLIYNTLPV-------EI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSV 174 (405)
Q Consensus 110 r~~l~~~L~~~~~~-------~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~v 174 (405)
...|.+.|.+.+.. +. |++++.|.+|..++ .+|+|+ +.+|++ +.||.||.|......-
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~--~gV~V~---~~~G~~--~~a~~VIvtvPl~vLk 288 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSK--NGVTVK---TEDGSV--YRAKYVIVSVSLGVLQ 288 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcC--CcEEEE---ECCCCE--EEeCEEEEccChHHhc
Confidence 35566666665521 24 99999999998644 457776 567765 8999999999866543
No 434
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.46 E-value=0.063 Score=43.70 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|.|||-|-.|...|..|.++|++|.++++.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4899999999999999999999999999998753
No 435
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=94.46 E-value=1.7 Score=41.96 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 112 DLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 112 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
.|-+.|.+.+..+-|+++++|..|+.++ ..|+|+ .++|++ +.||.||.|.-....
T Consensus 226 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~--~~~~v~---~~~g~~--~~ad~VI~t~P~~~~ 280 (462)
T TIGR00562 226 TLPEEIEKRLKLTKVYKGTKVTKLSHRG--SNYTLE---LDNGVT--VETDSVVVTAPHKAA 280 (462)
T ss_pred HHHHHHHHHhccCeEEcCCeEEEEEecC--CcEEEE---ECCCcE--EEcCEEEECCCHHHH
Confidence 4555565665432399999999998543 456665 556754 899999999886643
No 436
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=94.45 E-value=0.3 Score=48.42 Aligned_cols=127 Identities=21% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHH---cCCcEEEEccCCCCCCCCCCCcceeeCccHHHHHHHhccChhhhhcccCCcccc
Q 035933 6 RKPKAIIVGGSIAGISCAKALIL---AGWDVVVIEKTRGPPTGNPTGAGIALHLLSQKIVKSWLHQPDLLHNITLPLTID 82 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~---~g~~v~i~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 82 (405)
.+.+++|||.|+||..+...+.+ .-++|++|=..+.+.. .+ +.+++ ....+...++....
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY----~R-i~Ls~--------vl~~~~~~edi~l~---- 64 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNY----NR-ILLSS--------VLAGEKTAEDISLN---- 64 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccc----cc-eeecc--------ccCCCccHHHHhcc----
Confidence 46799999999999999999888 4578999966665422 11 11111 10000011110000
Q ss_pred ccceecCccceeeeecccCCcccccccHHHHHHHHHhcCCCce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEee
Q 035933 83 QNRAVDREKNICRVLARDENFNYLQAHWTDLHGLIYNTLPVEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVG 161 (405)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~ 161 (405)
+.+ + .-+.++ ++.+.+++.|. .+...|+ .++|.+ +.+
T Consensus 65 ---------------------------~~d---w---y~~~~i~L~~~~~v~~id--r~~k~V~-----t~~g~~--~~Y 102 (793)
T COG1251 65 ---------------------------RND---W---YEENGITLYTGEKVIQID--RANKVVT-----TDAGRT--VSY 102 (793)
T ss_pred ---------------------------chh---h---HHHcCcEEEcCCeeEEec--cCcceEE-----ccCCcE--eec
Confidence 000 0 013577 99999999887 4444444 457776 899
Q ss_pred eEEEeecCCcccccccccCCCCCCcCceEEEEEE
Q 035933 162 DLLVAADGSRSSVRQTFLPDSKLRYTGYCAWRGV 195 (405)
Q Consensus 162 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~ 195 (405)
|-+|.|+|..-.+-. -......+...|+..
T Consensus 103 DkLilATGS~pfi~P----iPG~~~~~v~~~R~i 132 (793)
T COG1251 103 DKLIIATGSYPFILP----IPGSDLPGVFVYRTI 132 (793)
T ss_pred ceeEEecCccccccC----CCCCCCCCeeEEecH
Confidence 999999998765433 123334455555554
No 437
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.44 E-value=0.066 Score=47.69 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.0
Q ss_pred CCCCCCCCcEEEEcCC---HHHHHHHHHHHHcCCcEEEEccC
Q 035933 1 MRERMRKPKAIIVGGS---IAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG---~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
|+.+|+.+.++|.||+ =.|.++|..|+++|++|++..|+
T Consensus 1 ~~~~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 1 MEGLMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred CccccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 6777777889999997 48999999999999999998765
No 438
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.43 E-value=0.092 Score=44.28 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=31.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
+..+.|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34578999999999999999999999999999865
No 439
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.41 E-value=0.062 Score=49.28 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
++.+|+|||+|-.|..+|..|++.|. +++|+|+..-
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 46799999999999999999999998 8999998863
No 440
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.39 E-value=0.053 Score=49.60 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|.|||.|-.||..|..|++.|++|+.+|....
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3799999999999999999999999999998764
No 441
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.39 E-value=0.07 Score=48.27 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=30.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
++|.|||+|..|...|..|+.+|+ +|+++|....
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 479999999999999999999887 8999998544
No 442
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.36 E-value=0.064 Score=48.31 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
...+|+|+|.|.+|..++..|++.|.+|+++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 357999999999999999999999999999999854
No 443
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.35 E-value=0.072 Score=46.84 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCCCCCCcEEEEcCC---HHHHHHHHHHHHcCCcEEEEccC
Q 035933 1 MRERMRKPKAIIVGGS---IAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 1 m~~~~~~~~V~IiGaG---~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
|+.+++.+.|+|.||+ =.|.++|..|+++|++|++..|+
T Consensus 1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 7777777889999986 69999999999999999998765
No 444
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.33 E-value=0.076 Score=48.26 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.++|.|||+|--|.++|..|++.|++|++++|...
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45899999999999999999999999999998753
No 445
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.33 E-value=0.056 Score=49.56 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=30.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.|||+|.-|...|..|++.|++|+++++.+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~ 35 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE 35 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 699999999999999999999999999998643
No 446
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.29 E-value=0.26 Score=49.03 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~ 41 (405)
..+|+|||+|..|.-+|..+.+.| -+|+|+.+.+.
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~ 302 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTR 302 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCc
Confidence 468999999999999999888888 57888888754
No 447
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.27 E-value=0.079 Score=44.79 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
..+.+|+|||+|-.|..+|..|++.|. +++|+|...-
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 356899999999999999999999998 8999998753
No 448
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.26 E-value=0.047 Score=52.02 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=34.7
Q ss_pred EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccccccccc
Q 035933 126 VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVRQTFL 179 (405)
Q Consensus 126 i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr~~l~ 179 (405)
|+++++|+.|+.++ +.+++. ..+|+. +.||.||.|.......+..+.
T Consensus 226 i~l~~~V~~I~~~~--~~v~v~---~~~g~~--~~ad~VI~a~p~~~l~~i~~~ 272 (450)
T PF01593_consen 226 IRLNTPVTRIERED--GGVTVT---TEDGET--IEADAVISAVPPSVLKNILLL 272 (450)
T ss_dssp EESSEEEEEEEEES--SEEEEE---ETTSSE--EEESEEEE-S-HHHHHTSEEE
T ss_pred eecCCcceeccccc--cccccc---cccceE--EecceeeecCchhhhhhhhhc
Confidence 99999999999655 567776 567775 899999999888776652343
No 449
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.26 E-value=0.051 Score=51.59 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=31.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.|||.|-.|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998764
No 450
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.24 E-value=0.15 Score=48.24 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=27.7
Q ss_pred EEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCCC
Q 035933 10 AIIVGGSIAGISCAKALILA--GWDVVVIEKTRGP 42 (405)
Q Consensus 10 V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~~ 42 (405)
|+|||+|++|+.+|..|.+. +.+++++.+.+..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 58999999999999999885 5688888777654
No 451
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.22 E-value=1.9 Score=40.89 Aligned_cols=28 Identities=39% Similarity=0.512 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCcEEEEccCCCCCC
Q 035933 17 IAGISCAKALILAGWDVVVIEKTRGPPT 44 (405)
Q Consensus 17 ~aGl~~A~~L~~~g~~v~i~E~~~~~~~ 44 (405)
+|||+||+.|+++|++|+|||+++.+..
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG 28 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGG 28 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence 5999999999999999999999988654
No 452
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.22 E-value=0.065 Score=52.09 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
..+|+|+|.|++|++++..|.++|.+|++.|+++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3689999999999999999999999999999653
No 453
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.15 E-value=0.082 Score=46.09 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
...+++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457999999999999999999999999999997765
No 454
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.12 E-value=0.08 Score=48.13 Aligned_cols=34 Identities=32% Similarity=0.459 Sum_probs=30.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
.+|+|||||..|...|..|+..|+ +|+++|....
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999999654
No 455
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.08 E-value=0.087 Score=49.30 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
....|+|+|.|+.|..+|..|+..|.+|+++|..+.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 457999999999999999999999999999998764
No 456
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.06 E-value=5.7 Score=38.14 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCCceEEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccccc
Q 035933 111 TDLHGLIYNTLPVEIVFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSSVR 175 (405)
Q Consensus 111 ~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~vr 175 (405)
..+.+.|.+.+....|+++++|.+|+.++ ..|+|. .++|+. +.||.||.|.-.....+
T Consensus 221 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~--~~~~v~---~~~g~~--~~~d~vI~a~p~~~~~~ 278 (451)
T PRK11883 221 QSLIEALEEKLPAGTIHKGTPVTKIDKSG--DGYEIV---LSNGGE--IEADAVIVAVPHPVLPS 278 (451)
T ss_pred HHHHHHHHHhCcCCeEEeCCEEEEEEEcC--CeEEEE---ECCCCE--EEcCEEEECCCHHHHHH
Confidence 35555666666432489999999998543 356665 457765 89999999987765443
No 457
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.05 E-value=0.062 Score=48.07 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=30.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.|||.|.-|.++|..|.++|++|+++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 699999999999999999999999999998643
No 458
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.05 E-value=0.076 Score=50.58 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=31.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|||.|-+|.++|..|.++|++|+++|++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997654
No 459
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.97 E-value=0.078 Score=51.04 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|+|+|+|++|+.++..+...|.+|+++|++..
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46999999999999999999999999999998764
No 460
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.91 E-value=0.08 Score=51.10 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=31.7
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.+|+|+|.|.+|.++|..|.+.|++|++.|+++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 5899999999999999999999999999998754
No 461
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.91 E-value=0.11 Score=45.08 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=34.4
Q ss_pred CCCCCCCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|++.++...|+|.|| |-.|..+|..|.++|++|+++.|++.
T Consensus 1 ~~~~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 454455678999997 88999999999999999999998653
No 462
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.90 E-value=0.092 Score=51.31 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
+...+|.|+|.|-+|+++|..|.++|++|++.|.+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 334689999999999999999999999999999765
No 463
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.86 E-value=0.041 Score=42.39 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
.+.+|.|||+|-.|..+|..|.+.|+.|.-+.-+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3579999999999999999999999999877544
No 464
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.81 E-value=0.096 Score=47.52 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=30.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGW--DVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~ 41 (405)
+|+|||+|-+|.++|..|+..|+ +++++|+...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 79999999999999999999994 7999999765
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.78 E-value=0.11 Score=47.35 Aligned_cols=36 Identities=22% Similarity=0.404 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~ 41 (405)
++.+|+|||||-.|.++|..|+..| .+++++|.+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 4679999999999999999999998 58999998765
No 466
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.77 E-value=0.11 Score=44.84 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCc---EEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWD---VVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~---v~i~E~~~ 40 (405)
+..+|+|+|||-+|...|..|.+.|.+ +.|++|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 457999999999999999999999985 99999984
No 467
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.70 E-value=0.11 Score=46.43 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTR 40 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~ 40 (405)
..+|+|+|+|-+|.++|..|++.|+ +|+|++|..
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4689999999999999999999998 799999864
No 468
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.69 E-value=0.084 Score=47.76 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=30.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
++|+|+|+|..|...|+.|++.|.+|+++=|.+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 3799999999999999999999988888877654
No 469
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.68 E-value=0.12 Score=45.21 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
++.+|+|||+|..|..+|..|++.|+ +++|+|...-
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 46899999999999999999999998 8999988743
No 470
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.64 E-value=0.11 Score=46.61 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
...+|+|+|+|..|..+|..|+..|.+|++++|...
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 347899999999999999999999999999998753
No 471
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.62 E-value=0.11 Score=44.67 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.7
Q ss_pred cEEEEc-CCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVG-GSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiG-aG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|.||| +|.-|.++|..|++.|++|+++.|.+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 699997 799999999999999999999987643
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.61 E-value=0.14 Score=43.06 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=30.8
Q ss_pred CCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
+..+|+|+|| |..|..+|..|++.|.+|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999875
No 473
>PRK07233 hypothetical protein; Provisional
Probab=93.57 E-value=3.5 Score=39.38 Aligned_cols=56 Identities=9% Similarity=-0.077 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCC-Cce-EEecceEEEEEEecCCCeEEEEEeecCCCceeEEeeeEEEeecCCccc
Q 035933 111 TDLHGLIYNTLP-VEI-VFWGHLYLTFCISHDKSTVNVKAKNLRTDVIIDVVGDLLVAADGSRSS 173 (405)
Q Consensus 111 ~~l~~~L~~~~~-~~~-i~~~~~v~~i~~~~~~~~v~v~~~~~~~g~~~~~~~d~vV~AdG~~S~ 173 (405)
..+.+.|.+.+. .|+ ++++++|.+|+.++ +.+++. ..+++. +++|.||.|......
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~--~~~~~~---~~~~~~--~~ad~vI~a~p~~~~ 255 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDG--GGVTGV---EVDGEE--EDFDAVISTAPPPIL 255 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcC--CceEEE---EeCCce--EECCEEEECCCHHHH
Confidence 356667777664 466 99999999998543 344433 234554 899999999987643
No 474
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.56 E-value=0.12 Score=44.86 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
+..+|+|||+|-.|..+|..|++.|. +++|+|...-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 46799999999999999999999998 7888888754
No 475
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.56 E-value=0.059 Score=46.25 Aligned_cols=33 Identities=39% Similarity=0.651 Sum_probs=26.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILA--GWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~ 41 (405)
+.+|||||+||.+||-.|++. ..+|+|+-..+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 368999999999999999986 457777766654
No 476
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.54 E-value=0.11 Score=47.58 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTR 40 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~ 40 (405)
++.+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 46799999999999999999999999 999999864
No 477
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.54 E-value=0.13 Score=46.64 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=31.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCC--cEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGW--DVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~--~v~i~E~~~~ 41 (405)
..+|+|||+|-.|.++|+.|...|+ ++.|+|.+..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4699999999999999999999887 7999998764
No 478
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.53 E-value=0.2 Score=35.70 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHc-CCcEEEEcc
Q 035933 6 RKPKAIIVGGSIAGISCAKALILA-GWDVVVIEK 38 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~-g~~v~i~E~ 38 (405)
...+++|+|+|-+|..++..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457999999999999999999998 678999988
No 479
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.50 E-value=0.091 Score=51.04 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
-.+|.|||+|.-|...|..|++.|++|+++|+.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999999865
No 480
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.49 E-value=0.14 Score=43.71 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKT 39 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~ 39 (405)
+..+|+|||||.+++.=+..|.+.|.+|+|+-..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3568999999999999999999999999999654
No 481
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.46 E-value=0.14 Score=44.58 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.2
Q ss_pred CCCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|+.+.|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 44568999997 89999999999999999999998754
No 482
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.46 E-value=0.12 Score=47.96 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=31.6
Q ss_pred CcEEEEcCCHHHHHHHHHHHHcC-CcEEEEccCCC
Q 035933 8 PKAIIVGGSIAGISCAKALILAG-WDVVVIEKTRG 41 (405)
Q Consensus 8 ~~V~IiGaG~aGl~~A~~L~~~g-~~v~i~E~~~~ 41 (405)
.+|+|||+|-.|..+|..|++.| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 48999999999999999999999 89999999854
No 483
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.36 E-value=0.11 Score=48.25 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=27.4
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
.|+|+|+||.||+++..++..|. +|+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 69999999999999888888886 6666677654
No 484
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.36 E-value=0.073 Score=46.91 Aligned_cols=35 Identities=29% Similarity=0.506 Sum_probs=32.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.-+|+|+|||.+|.-+|..+...|.+|+|+|.+..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 46999999999999999999999999999999843
No 485
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.16 Score=44.50 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=34.3
Q ss_pred CCCCCCCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 1 MRERMRKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 1 m~~~~~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
|++.+..+.|+|.|| |-.|..+|..|+++|.+|+++.|+..
T Consensus 1 m~~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 1 MSMTFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCcCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 555455679999997 57999999999999999999998753
No 486
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.16 Score=44.44 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 1 MRERMRKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 1 m~~~~~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
|+..++.+.|+|.|| |..|..+|..|.++|++|+++.++.
T Consensus 1 ~~~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~ 41 (250)
T PRK12939 1 MASNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLA 41 (250)
T ss_pred CCCCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 444455678999997 8999999999999999999997654
No 487
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.27 E-value=0.14 Score=48.16 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
....|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 456899999999999999999999999999998764
No 488
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.27 E-value=0.14 Score=44.25 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
++.+|+|||+|-.|...|..|++.|. +++|+|...-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 56899999999999999999999998 8889987753
No 489
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.19 E-value=0.17 Score=44.59 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 1 MRERMRKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 1 m~~~~~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
|+..++.+.|+|.|| |-.|..+|..|+++|++|+++.|.+
T Consensus 1 ~~~~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 1 MMSNLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred CcccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 443344578999999 8999999999999999999998875
No 490
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.18 E-value=0.11 Score=50.15 Aligned_cols=33 Identities=36% Similarity=0.417 Sum_probs=31.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 799999999999999999999999999998754
No 491
>PLN02494 adenosylhomocysteinase
Probab=93.16 E-value=0.18 Score=47.87 Aligned_cols=36 Identities=33% Similarity=0.331 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
.-..|+|+|.|+.|..+|..|+..|.+|+++|+.+.
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 457999999999999999999999999999998764
No 492
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.12 E-value=0.17 Score=43.08 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
...+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 56799999999999999999999998 5999998753
No 493
>PRK08328 hypothetical protein; Provisional
Probab=93.10 E-value=0.17 Score=43.82 Aligned_cols=36 Identities=28% Similarity=0.348 Sum_probs=31.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
++.+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45799999999999999999999998 7889977643
No 494
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.10 E-value=0.16 Score=41.70 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=29.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGW-DVVVIEKTR 40 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~ 40 (405)
+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999999999 599999875
No 495
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=93.07 E-value=0.12 Score=43.31 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 6 RKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 6 ~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+...|.|||||.-|.-.|...+..|++|.+++++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 457999999999999999999999999999999865
No 496
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.03 E-value=0.13 Score=49.47 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=29.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHc--CCcEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILA--GWDVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~--g~~v~i~E~~~~ 41 (405)
+|+|||+|-.|+.+|..|+++ |++|+.+|..+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 699999999999999999998 578999998764
No 497
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.02 E-value=0.14 Score=49.42 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCcEEEEcCCHHHHH-HHHHHHHcCCcEEEEccCCC
Q 035933 7 KPKAIIVGGSIAGIS-CAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 7 ~~~V~IiGaG~aGl~-~A~~L~~~g~~v~i~E~~~~ 41 (405)
..+|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 358999999999999 69999999999999998654
No 498
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.97 E-value=0.18 Score=39.88 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHcCC-cEEEEccCCC
Q 035933 9 KAIIVGGSIAGISCAKALILAGW-DVVVIEKTRG 41 (405)
Q Consensus 9 ~V~IiGaG~aGl~~A~~L~~~g~-~v~i~E~~~~ 41 (405)
+|+|||+|-.|...|..|++.|+ +++|+|...-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 58999999999999999999999 7999998754
No 499
>PLN02240 UDP-glucose 4-epimerase
Probab=92.94 E-value=0.19 Score=46.64 Aligned_cols=36 Identities=31% Similarity=0.545 Sum_probs=31.5
Q ss_pred CCCCcEEEEcC-CHHHHHHHHHHHHcCCcEEEEccCC
Q 035933 5 MRKPKAIIVGG-SIAGISCAKALILAGWDVVVIEKTR 40 (405)
Q Consensus 5 ~~~~~V~IiGa-G~aGl~~A~~L~~~g~~v~i~E~~~ 40 (405)
|+..+|+|.|| |..|..++..|.++|++|+++.+..
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~ 39 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLD 39 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence 44578999998 9999999999999999999998653
No 500
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.92 E-value=0.18 Score=40.46 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHcCCcEEEEccCCC
Q 035933 5 MRKPKAIIVGGSIAGISCAKALILAGWDVVVIEKTRG 41 (405)
Q Consensus 5 ~~~~~V~IiGaG~aGl~~A~~L~~~g~~v~i~E~~~~ 41 (405)
+.-+.|+|+|=|..|-.+|..|+..|.+|+|.|..|.
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 3446899999999999999999999999999999864
Done!