BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035937
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 58/97 (59%), Gaps = 21/97 (21%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE--------------IASNRKIVPSEVTI 49
GGPG+GKGTQC K+VK++ HLSAGDLLR E +IVP E+T+
Sbjct: 22 GGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITL 81
Query: 50 SLIRKEIESSDN-----HKFLINGFPRSEENRAAFER 81
+L+R I SDN HKFLI+GFPR + +FER
Sbjct: 82 ALLRNAI--SDNVKANKHKFLIDGFPRKMDQAISFER 116
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 19/97 (19%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE--------------IASNRKIVPSEVTI 49
GGPG+GKGTQC +IV+ +G THLSAG+LLR E KIVP E+TI
Sbjct: 10 GGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITI 69
Query: 50 SLIRKEIE-----SSDNHKFLINGFPRSEENRAAFER 81
SL+++E++ ++ +KFLI+GFPR+++N + +
Sbjct: 70 SLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNK 106
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP,
AND Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 53/81 (65%), Gaps = 13/81 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTIS 50
GGPGSGKGTQC IV++FG HLSAGDLLR+E S N +IVPS VT+
Sbjct: 13 GGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVK 72
Query: 51 LIRKEIESSDNHKFLINGFPR 71
L++ I+++ FL++GFPR
Sbjct: 73 LLKNAIDANQGKNFLVDGFPR 93
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 15/93 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEVTIS 50
GGPGSGKGTQC KIV+ +G THLS GDLLR E++S ++VP E +
Sbjct: 16 GGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLD 75
Query: 51 LIRKEIESSDNHK--FLINGFPRSEENRAAFER 81
++R + + N FLI+G+PR + FER
Sbjct: 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFER 108
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 15/93 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEVTIS 50
GGPGSGKGTQC KIV+ +G THLS GDLLR E++S ++VP E +
Sbjct: 16 GGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLD 75
Query: 51 LIRKE-IESSDNHK-FLINGFPRSEENRAAFER 81
++R + D K FLI+G+PR + FER
Sbjct: 76 MLRDAMVAKVDTSKGFLIDGYPREVKQGEEFER 108
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 15/93 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEVTIS 50
GGPGSGKGTQC K+V+ +G THLS G+LLR E+AS + +VPS + +
Sbjct: 19 GGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLE 78
Query: 51 LIRKEIESS--DNHKFLINGFPRSEENRAAFER 81
L+++ + +S D FLI+G+PR + F R
Sbjct: 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGR 111
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 15/97 (15%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEV 47
M+SG P SGKGTQC I + L H+SAGDLLR EIA+ ++VP E+
Sbjct: 9 MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEI 68
Query: 48 TISLIRKEIESSDNHK--FLINGFPRSEENRAAFERI 82
++++++ + D + +L++G+PRS A E +
Sbjct: 69 VVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETL 105
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 15/93 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEVTIS 50
GGPGSGKGTQC K+V+ F HLS+GDLLR E+ S ++VP EV ++
Sbjct: 36 GGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLA 95
Query: 51 LIRKEIES--SDNHKFLINGFPRSEENRAAFER 81
L+++ + N FLI+G+PR + FE+
Sbjct: 96 LLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEK 128
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRKI-------------VPSEV 47
++ G PGSGKGT C +I +NFGL HLS+G LR I ++ ++ VP V
Sbjct: 9 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 68
Query: 48 TISLIRKEIESSDNHKFLINGFPRSEENRAAFERI 82
L+ E+E+ +L++GFPR+ A ++I
Sbjct: 69 ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI 103
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 13/95 (13%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRKI-------------VPSEV 47
++ G PGSGKGT C +I +NFGL HLS+G LR I ++ ++ VP V
Sbjct: 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHV 90
Query: 48 TISLIRKEIESSDNHKFLINGFPRSEENRAAFERI 82
L+ E+E+ +L++GFPR+ A ++I
Sbjct: 91 ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKI 125
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 14/96 (14%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ +IV+ +G H+S GD+ R I + +VP EV
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEV 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRSEENRAAFERI 82
TI ++R+ + SD ++ FL++GFPR+ A +++
Sbjct: 64 TIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQL 99
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ KIV +G+ H+S GD+ R ++ +VP EV
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRSEENRAAFE 80
TI ++R+ + D + FL++GFPR+ A E
Sbjct: 64 TIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALE 97
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+ +G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++R+ + SD + FL++GFPR+
Sbjct: 64 TIGIVRERLSKSDCERGFLLDGFPRT 89
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEVT 48
+ G PGSGKGT ++I K+F L HLS+GDLLR + K++P +V
Sbjct: 11 IMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVM 70
Query: 49 ISLIRKEIESSDNHKFLINGFPRSEENRAAFER 81
L+ E+++ + +L++GFPR+ A +R
Sbjct: 71 TRLVLHELKNLTQYNWLLDGFPRTLPQAEALDR 103
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEV 47
+L G PG+GKGTQ K+ KNF + HL+ GD+LR +AS K+V E+
Sbjct: 20 VLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEM 79
Query: 48 TISLIRKEIESSD-NHKFLINGFPRS 72
+ LI K +E+ + FL++GFPR+
Sbjct: 80 VLELIEKNLETPPCKNGFLLDGFPRT 105
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
++ G PGSGKGT ++I +F L HLS+GDLLR + K++P +V
Sbjct: 11 VIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDV 70
Query: 48 TISLIRKEIESSDNHKFLINGFPRSEENRAAFER 81
L E+++ + +L++GFPR+ A +R
Sbjct: 71 MTRLALHELKNLTQYSWLLDGFPRTLPQAEALDR 104
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From
Marinibacillus Marinus
Length = 216
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 14/96 (14%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ +I++ + + H+S GD+ R I + + +VP EV
Sbjct: 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRSEENRAAFERI 82
TI ++ + + D K FL++GFPR+ A + +
Sbjct: 64 TIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSL 99
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ +IV+ +G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEV 47
+L G PG+GKGTQ ++ +NF + HL+ GD+LR +AS K+V E+
Sbjct: 20 VLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEM 79
Query: 48 TISLIRKEIESS-DNHKFLINGFPRS 72
+ LI K +E+ + FL++GFPR+
Sbjct: 80 VVELIEKNLETPLCKNGFLLDGFPRT 105
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRKI-------------VPSEV 47
+L G PGSGKGTQC I K +GL HLS GD+LR I + KI V E+
Sbjct: 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEI 68
Query: 48 TISLIRKEIE-SSDNHKFLINGFPRS 72
+ L++++ + + F+++GFPR+
Sbjct: 69 VLGLVKEKFDLGVCVNGFVLDGFPRT 94
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic
Transition State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic
Transition State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein:
The Structure Of E. Cloi Adenylate Kinase With Bound
Amp And Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein:
The Structure Of E. Cloi Adenylate Kinase With Bound
Amp And Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ I++ +G+ +S GD+LR ++I K+V E+
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRS 72
I+L+++ I D + FL++GFPR+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRT 89
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGTQ I++ +G+ +S GD+LR ++I K+V E+
Sbjct: 4 ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRS 72
I+L+++ I D + FL++GFPR+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRT 89
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G PG+GKGT +IV+++G+ H+S GD+ R + ++VP EV
Sbjct: 4 VLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEV 63
Query: 48 TISLIRKEIESSDNHK-FLINGFPRS 72
TI ++++ + D + FL++GFPR+
Sbjct: 64 TIGIVKERLGKDDCERGFLLDGFPRT 89
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis
Adenylate Kinase
Length = 181
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ K+ + G+ +S G+L RR I K +VPS++
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRSEENRAAF 79
T L+ + + D + F+++G+PRS E A
Sbjct: 64 TNELVDDRLNNPDAANGFILDGYPRSVEQAKAL 96
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ K+ + G+ +S G+L RR I K +VPS++
Sbjct: 24 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 83
Query: 48 TISLIRKEIESSD-NHKFLINGFPRSEENRAAFERI 82
T L+ + + D + F+++G+PRS E A +
Sbjct: 84 TNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEM 119
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified
In The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified
In The Gly-Loop
Length = 214
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G P +GKGTQ I++ +G+ +S GD+LR ++I K+V E+
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRS 72
I+L+++ I D + FL++GFPR+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRT 89
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 17/92 (18%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEVTIS 50
G PG+GKGTQ +++ + G LS GD+LR R I +VP ++ +
Sbjct: 11 GPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILE 70
Query: 51 LIRKEIESSDNHKFLINGFPRSEENRAAFERI 82
LIR+E+ + + +GFPR+ A +R+
Sbjct: 71 LIREEL----AERVIFDGFPRTLAQAEALDRL 98
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR-------------KIVPSEV 47
+L G PG+GKGTQ I + FG+ +S GD LR + + K+VP +
Sbjct: 12 ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 48 TISLIRKEIESSD-NHKFLINGFPRS 72
I L+++ ++ +D + +L +GFPR+
Sbjct: 72 IIGLVKERLKEADCANGYLFDGFPRT 97
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 15/87 (17%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ + + F HL+ GD+LR +IA + +V ++
Sbjct: 8 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 67
Query: 48 TISLIRKEIESSDNHK--FLINGFPRS 72
+++I+ E+ ++ K F+++GFPR+
Sbjct: 68 MVNMIKDELTNNPACKNGFILDGFPRT 94
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From
Yeast Ligated With Inhibitor Ap5a, Showing The Pathway
Of Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From
Yeast Ligated With Inhibitor Ap5a, Showing The Pathway
Of Phosphoryl Transfer
Length = 220
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 15/87 (17%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ + + F HL+ GD+LR +IA + +V ++
Sbjct: 8 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 67
Query: 48 TISLIRKEIESSDNHK--FLINGFPRS 72
+++I+ E+ ++ K F+++GFPR+
Sbjct: 68 MVNMIKDELTNNPACKNGFILDGFPRT 94
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 52.0 bits (123), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEV 47
+L G +GKGTQ I++ +G+ +S GD+LR ++I K+V E+
Sbjct: 4 ILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 48 TISLIRKEIESSD-NHKFLINGFPRS 72
I+L+++ I D + FL++GFPR+
Sbjct: 64 VIALVKERIAQEDCRNGFLLDGFPRT 89
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 15/92 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEVTIS 50
G PG+GKGTQ ++ K G H+S GD+LR +E ++VP ++ I+
Sbjct: 7 GPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIA 66
Query: 51 LIRKEIESSDNHKFLINGFPRSEENRAAFERI 82
LI + N + +GFPR+ + A + +
Sbjct: 67 LIEEVFPKHGN--VIFDGFPRTVKQAEALDEM 96
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 15/87 (17%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
+L G PG+GKGTQ + + F HL+ GD+LR +IA + +V ++
Sbjct: 8 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 67
Query: 48 TISLIRKEIESSDNHK--FLINGFPRS 72
+++I+ E+ ++ K F++ GFPR+
Sbjct: 68 MVNMIKDELTNNPACKNGFILVGFPRT 94
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 14/83 (16%)
Query: 4 GGPGSGKGTQCTKIVKNFGLTHLSAGDLLR-------------REIASNRKIVPSEVTIS 50
G PGSGKGTQ + K+ HLS GDLLR + I + K+V ++ +S
Sbjct: 36 GAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLS 95
Query: 51 LIRKEIESSDNHK-FLINGFPRS 72
L+ +++++ K F+++G+PR+
Sbjct: 96 LVDEKLKTPQCKKGFILDGYPRN 118
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
++ G GSGKGTQ + + L H+ +G + R I + +VP ++
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 48 TISLIRKEIESSDNHKFLINGFPRS 72
TI ++ + +ES +L++GFPR+
Sbjct: 64 TIPMVLETLESKGKDGWLLDGFPRN 88
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRK-------------IVPSEV 47
++ G GSGKGTQ + + L H+ +G + R I + +VP ++
Sbjct: 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDI 63
Query: 48 TISLIRKEIESSDNHKFLINGFPRS 72
TI ++ + +ES +L++GFPR+
Sbjct: 64 TIPMVLETLESKGKDGWLLDGFPRN 88
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35
+L+G PG GK T ++ GL +++ GDL R E
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 42
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0
Angstroms Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35
+L+G PG GK T ++ GL +++ GDL R E
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49
>pdb|1Q3T|A Chain A, Solution Structure And Function Of An Essential Cmp
Kinase Of Streptococcus Pneumoniae
Length = 236
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLR 33
+ G SGK T I K+FG T+L G + R
Sbjct: 21 IDGPASSGKSTVAKIIAKDFGFTYLDTGAMYR 52
>pdb|4DHX|B Chain B, Eny2:ganp Complex
pdb|4DHX|C Chain C, Eny2:ganp Complex
pdb|4DHX|E Chain E, Eny2:ganp Complex
pdb|4DHX|F Chain F, Eny2:ganp Complex
Length = 101
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRKIVPSEVTISLIRK 54
++ G C +++K GL H++ DL+ R +VP V L+++
Sbjct: 37 LIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQR 90
>pdb|3QKZ|A Chain A, Crystal Structure Of Mutant His269arg Akr1b14
pdb|3QKZ|B Chain B, Crystal Structure Of Mutant His269arg Akr1b14
Length = 316
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 31 LLRREIASNRKIVPSEVTISLIRKEIESSDNHKFLINGFPRSEENRAA 78
L+R + N ++P VT+S I++ I+ D F SEE+ AA
Sbjct: 249 LIRFHVQRNVAVIPKSVTLSRIKENIQVFD--------FQLSEEDMAA 288
>pdb|3O3R|A Chain A, Crystal Structure Of Akr1b14 In Complex With Nadp
pdb|3O3R|B Chain B, Crystal Structure Of Akr1b14 In Complex With Nadp
Length = 316
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 31 LLRREIASNRKIVPSEVTISLIRKEIESSDNHKFLINGFPRSEENRAA 78
L+R + N ++P VT+S I++ I+ D F SEE+ AA
Sbjct: 249 LIRFHVQRNVAVIPKSVTLSHIKENIQVFD--------FQLSEEDMAA 288
>pdb|2IRP|A Chain A, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
pdb|2IRP|B Chain B, Crystal Structure Of The L-fuculose-1-phosphate Aldolase
(aq_1979) From Aquifex Aeolicus Vf5
Length = 208
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 30 DLLRREIASNRKIVPSEVTISLIRKEIE-----SSDNHKFLING 68
D+ E+ I P+E I L+ KE+E S D + FLI G
Sbjct: 130 DIHTHEVKIKIPIFPNEQNIPLLAKEVENYFKTSEDKYGFLIRG 173
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 2 LSGGPGSGKGTQCTKIVKNFG 22
+SGG SGK T C KI++ G
Sbjct: 30 VSGGTASGKSTVCEKIMELLG 50
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 2 LSGGPGSGKGTQCTKIVKNFG 22
+SGG SGK + C KIV+ G
Sbjct: 27 VSGGTASGKSSVCAKIVQLLG 47
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 25.8 bits (55), Expect = 5.8, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 2 LSGGPGSGKGTQCTKIVKNFG 22
+SGG SGK + C KIV+ G
Sbjct: 25 VSGGTASGKSSVCAKIVQLLG 45
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 4 GGPGSGKGTQCTKIVKNFGLT--HLSAGDL 31
GG G GK QC + + G+ +SAG+L
Sbjct: 43 GGKGQGKSFQCELVFRKMGINPIMMSAGEL 72
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 41 KIVPSEVTISLIRKEIESSDNH 62
K VP VT+S+ RK ++SD H
Sbjct: 235 KPVPGHVTVSICRKYSDASDCH 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,443,680
Number of Sequences: 62578
Number of extensions: 77504
Number of successful extensions: 270
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 57
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)