Query 035937
Match_columns 82
No_of_seqs 167 out of 1183
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 13:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 99.9 4.7E-27 1.6E-31 142.0 10.0 79 1-81 4-95 (206)
2 3umf_A Adenylate kinase; rossm 99.9 7.1E-27 2.4E-31 142.3 10.3 81 1-81 33-128 (217)
3 3gmt_A Adenylate kinase; ssgci 99.9 2.7E-24 9.3E-29 131.8 10.9 80 2-81 13-106 (230)
4 3tlx_A Adenylate kinase 2; str 99.8 2.2E-20 7.5E-25 114.7 9.9 81 1-81 33-127 (243)
5 3dl0_A Adenylate kinase; phosp 99.8 8.6E-20 2.9E-24 109.7 10.4 81 1-81 4-98 (216)
6 3fb4_A Adenylate kinase; psych 99.8 1.4E-19 4.8E-24 108.7 10.6 81 1-81 4-98 (216)
7 3be4_A Adenylate kinase; malar 99.8 2.3E-19 7.8E-24 108.3 10.9 80 1-80 9-102 (217)
8 1ak2_A Adenylate kinase isoenz 99.8 2.9E-19 1E-23 108.8 9.9 80 1-80 20-113 (233)
9 1e4v_A Adenylate kinase; trans 99.8 6.1E-19 2.1E-23 106.1 9.9 80 1-80 4-97 (214)
10 1aky_A Adenylate kinase; ATP:A 99.8 6.9E-19 2.4E-23 106.2 9.7 80 1-80 8-102 (220)
11 2xb4_A Adenylate kinase; ATP-b 99.8 3E-18 1E-22 103.9 10.0 80 1-80 4-96 (223)
12 2cdn_A Adenylate kinase; phosp 99.8 6.9E-18 2.4E-22 100.5 9.6 80 1-80 24-117 (201)
13 1zak_A Adenylate kinase; ATP:A 99.8 5E-18 1.7E-22 102.5 8.8 80 1-80 9-103 (222)
14 1zd8_A GTP:AMP phosphotransfer 99.8 1.8E-17 6.2E-22 100.4 10.9 81 1-81 11-104 (227)
15 2c95_A Adenylate kinase 1; tra 99.7 2.8E-17 9.7E-22 97.0 10.3 80 1-80 13-107 (196)
16 1qf9_A UMP/CMP kinase, protein 99.7 5.1E-17 1.7E-21 95.4 10.9 79 1-79 10-101 (194)
17 2bwj_A Adenylate kinase 5; pho 99.7 3.7E-17 1.3E-21 96.7 10.1 80 1-80 16-110 (199)
18 1tev_A UMP-CMP kinase; ploop, 99.7 1.5E-16 5.2E-21 93.5 10.4 79 1-79 7-104 (196)
19 1ukz_A Uridylate kinase; trans 99.7 1.3E-16 4.3E-21 95.0 9.6 80 1-80 19-115 (203)
20 3cm0_A Adenylate kinase; ATP-b 99.7 1.7E-16 5.7E-21 93.2 8.9 76 1-80 8-96 (186)
21 3lw7_A Adenylate kinase relate 99.6 1.3E-15 4.4E-20 87.9 8.3 79 1-81 5-97 (179)
22 2bbw_A Adenylate kinase 4, AK4 99.6 3.1E-14 1.1E-18 87.1 11.0 80 1-80 31-123 (246)
23 1ly1_A Polynucleotide kinase; 99.5 2.6E-14 9E-19 83.1 6.4 79 1-80 6-97 (181)
24 3t61_A Gluconokinase; PSI-biol 99.4 3.5E-13 1.2E-17 80.1 7.5 79 1-81 22-106 (202)
25 1kht_A Adenylate kinase; phosp 99.4 4.1E-13 1.4E-17 78.6 7.2 71 1-71 7-94 (192)
26 1ltq_A Polynucleotide kinase; 99.4 1.2E-12 4.1E-17 81.8 8.4 79 1-80 6-97 (301)
27 1nks_A Adenylate kinase; therm 99.4 1.2E-12 4E-17 76.7 6.4 36 1-36 5-45 (194)
28 3vaa_A Shikimate kinase, SK; s 99.4 1.1E-12 3.6E-17 78.1 5.7 36 1-36 29-64 (199)
29 2rhm_A Putative kinase; P-loop 99.3 5.1E-12 1.7E-16 74.1 7.7 35 1-35 9-43 (193)
30 3trf_A Shikimate kinase, SK; a 99.3 9.4E-12 3.2E-16 72.8 7.1 36 1-36 9-44 (185)
31 2pt5_A Shikimate kinase, SK; a 99.3 9.9E-12 3.4E-16 71.6 7.1 36 1-36 4-39 (168)
32 2p5t_B PEZT; postsegregational 99.3 2.8E-12 9.6E-17 78.9 3.6 76 1-79 36-127 (253)
33 3iij_A Coilin-interacting nucl 99.2 2.3E-11 7.7E-16 71.0 6.8 66 1-69 15-87 (180)
34 3zvl_A Bifunctional polynucleo 99.2 2E-11 6.8E-16 79.9 7.2 67 1-80 262-328 (416)
35 2iyv_A Shikimate kinase, SK; t 99.2 8.4E-12 2.9E-16 73.0 4.6 36 1-36 6-41 (184)
36 1gvn_B Zeta; postsegregational 99.2 1.9E-11 6.6E-16 76.6 6.4 76 1-79 37-128 (287)
37 1zuh_A Shikimate kinase; alpha 99.2 9.9E-12 3.4E-16 71.8 4.7 36 1-36 11-46 (168)
38 1via_A Shikimate kinase; struc 99.2 1.2E-11 4E-16 72.0 4.5 35 1-35 8-42 (175)
39 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 2.2E-11 7.6E-16 75.2 5.7 75 1-80 8-91 (260)
40 3ch4_B Pmkase, phosphomevalona 99.2 1.2E-10 4.2E-15 70.1 8.6 80 1-81 15-122 (202)
41 1y63_A LMAJ004144AAA protein; 99.2 1.7E-11 6E-16 72.0 4.0 67 1-69 14-91 (184)
42 1e6c_A Shikimate kinase; phosp 99.2 2.5E-11 8.7E-16 70.1 4.5 35 1-35 6-40 (173)
43 2grj_A Dephospho-COA kinase; T 99.2 4.1E-11 1.4E-15 71.5 5.2 36 2-37 17-52 (192)
44 3nwj_A ATSK2; P loop, shikimat 99.2 9.4E-11 3.2E-15 72.5 6.7 36 1-36 52-87 (250)
45 1cke_A CK, MSSA, protein (cyti 99.1 5.4E-11 1.8E-15 71.4 4.9 35 2-36 10-44 (227)
46 1kag_A SKI, shikimate kinase I 99.1 5.4E-11 1.8E-15 68.8 4.5 35 1-35 8-42 (173)
47 1knq_A Gluconate kinase; ALFA/ 99.1 3.4E-10 1.2E-14 65.6 7.8 32 1-32 12-43 (175)
48 4eun_A Thermoresistant glucoki 99.1 1.9E-10 6.5E-15 68.3 6.7 81 1-81 33-121 (200)
49 3kb2_A SPBC2 prophage-derived 99.1 3.6E-11 1.2E-15 69.2 3.3 34 1-34 5-38 (173)
50 2vli_A Antibiotic resistance p 99.1 5.2E-10 1.8E-14 65.1 7.4 73 1-74 9-90 (183)
51 2pbr_A DTMP kinase, thymidylat 99.1 7.7E-10 2.6E-14 64.7 8.1 29 1-29 4-35 (195)
52 3ake_A Cytidylate kinase; CMP 99.0 2.9E-10 9.8E-15 67.3 4.9 36 1-36 6-41 (208)
53 3r20_A Cytidylate kinase; stru 99.0 7.1E-10 2.4E-14 68.0 6.7 36 1-36 13-48 (233)
54 1jjv_A Dephospho-COA kinase; P 99.0 2.3E-10 7.7E-15 68.0 4.3 33 2-35 7-39 (206)
55 1qhx_A CPT, protein (chloramph 99.0 3.4E-10 1.2E-14 65.7 4.3 34 1-34 7-42 (178)
56 2plr_A DTMP kinase, probable t 99.0 9.8E-10 3.4E-14 65.0 6.3 38 1-38 8-51 (213)
57 1uf9_A TT1252 protein; P-loop, 99.0 4.6E-10 1.6E-14 66.2 4.6 35 1-36 12-46 (203)
58 2if2_A Dephospho-COA kinase; a 99.0 3.3E-10 1.1E-14 67.1 4.0 35 1-36 5-39 (204)
59 2axn_A 6-phosphofructo-2-kinas 99.0 9.9E-10 3.4E-14 73.8 6.6 80 1-80 39-138 (520)
60 4e22_A Cytidylate kinase; P-lo 99.0 5.8E-10 2E-14 68.6 5.0 35 2-36 32-66 (252)
61 2wwf_A Thymidilate kinase, put 99.0 6.6E-10 2.3E-14 65.9 4.9 28 1-28 14-41 (212)
62 2v54_A DTMP kinase, thymidylat 99.0 2.5E-09 8.4E-14 63.1 6.8 28 1-28 8-36 (204)
63 2ze6_A Isopentenyl transferase 98.9 3.5E-10 1.2E-14 69.7 2.8 32 1-32 5-36 (253)
64 2h92_A Cytidylate kinase; ross 98.9 8.5E-10 2.9E-14 66.0 4.3 35 1-35 7-41 (219)
65 1q3t_A Cytidylate kinase; nucl 98.9 1.4E-09 4.7E-14 66.1 5.1 34 2-35 21-54 (236)
66 1vht_A Dephospho-COA kinase; s 98.9 1.1E-09 3.7E-14 65.6 4.5 35 1-36 8-42 (218)
67 2f6r_A COA synthase, bifunctio 98.9 1.3E-09 4.6E-14 68.0 4.5 35 1-36 79-113 (281)
68 1uj2_A Uridine-cytidine kinase 98.9 6.8E-10 2.3E-14 68.1 2.6 32 2-33 27-68 (252)
69 4i1u_A Dephospho-COA kinase; s 98.9 2.4E-09 8.1E-14 64.8 4.7 36 2-38 14-49 (210)
70 4eaq_A DTMP kinase, thymidylat 98.9 1.1E-08 3.9E-13 62.2 7.3 38 1-38 30-77 (229)
71 3uie_A Adenylyl-sulfate kinase 98.8 2.1E-08 7E-13 59.4 7.3 31 1-31 29-64 (200)
72 3fdi_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 62.7 4.5 34 2-36 11-44 (201)
73 3t15_A Ribulose bisphosphate c 98.8 9.1E-09 3.1E-13 64.5 5.7 33 1-33 40-74 (293)
74 2yvu_A Probable adenylyl-sulfa 98.7 5.8E-08 2E-12 56.7 7.7 34 1-35 17-55 (186)
75 2qt1_A Nicotinamide riboside k 98.7 3.2E-09 1.1E-13 63.1 2.2 33 2-34 26-59 (207)
76 2z0h_A DTMP kinase, thymidylat 98.7 6.8E-09 2.3E-13 60.8 3.2 28 1-28 4-34 (197)
77 3hdt_A Putative kinase; struct 98.7 1.5E-08 5.1E-13 61.7 4.8 36 2-38 19-54 (223)
78 2jaq_A Deoxyguanosine kinase; 98.7 8E-09 2.7E-13 60.7 3.2 27 1-27 4-30 (205)
79 1zp6_A Hypothetical protein AT 98.7 6.9E-09 2.4E-13 60.7 2.9 33 1-33 13-47 (191)
80 3ec2_A DNA replication protein 98.7 7.5E-08 2.6E-12 56.0 7.1 35 1-35 42-82 (180)
81 3crm_A TRNA delta(2)-isopenten 98.7 6.5E-09 2.2E-13 66.4 2.1 32 1-32 9-40 (323)
82 1bif_A 6-phosphofructo-2-kinas 98.7 7.6E-08 2.6E-12 63.7 7.2 79 1-79 43-141 (469)
83 2bdt_A BH3686; alpha-beta prot 98.6 2.6E-08 9E-13 58.3 3.9 32 1-32 6-38 (189)
84 1dek_A Deoxynucleoside monopho 98.6 3.4E-08 1.2E-12 60.8 4.2 36 2-37 6-41 (241)
85 2pez_A Bifunctional 3'-phospho 98.6 2.2E-08 7.6E-13 58.2 3.1 34 1-34 9-46 (179)
86 1nn5_A Similar to deoxythymidy 98.6 7.6E-09 2.6E-13 61.4 1.1 24 1-24 13-36 (215)
87 2gks_A Bifunctional SAT/APS ki 98.6 2.4E-07 8.2E-12 62.6 8.4 75 1-79 376-462 (546)
88 4b4t_M 26S protease regulatory 98.6 2.1E-08 7.1E-13 66.3 2.9 28 1-28 219-246 (434)
89 1jbk_A CLPB protein; beta barr 98.6 1.2E-07 4E-12 54.6 5.7 21 1-21 47-67 (195)
90 3eie_A Vacuolar protein sortin 98.6 9E-08 3.1E-12 60.5 5.5 33 1-33 55-89 (322)
91 1a7j_A Phosphoribulokinase; tr 98.6 8.7E-09 3E-13 64.7 0.8 32 2-33 10-46 (290)
92 3d3q_A TRNA delta(2)-isopenten 98.6 1.6E-08 5.4E-13 65.0 2.0 31 1-31 11-41 (340)
93 4b4t_K 26S protease regulatory 98.6 2.9E-08 9.8E-13 65.5 3.2 28 1-28 210-237 (428)
94 4b4t_L 26S protease subunit RP 98.6 2.9E-08 9.9E-13 65.6 3.2 28 1-28 219-246 (437)
95 4b4t_J 26S protease regulatory 98.6 3E-08 1E-12 65.0 3.1 28 1-28 186-213 (405)
96 3asz_A Uridine kinase; cytidin 98.6 3.5E-08 1.2E-12 58.6 3.1 32 2-33 11-44 (211)
97 1m7g_A Adenylylsulfate kinase; 98.6 2.9E-08 9.9E-13 59.3 2.7 33 1-34 29-67 (211)
98 2qor_A Guanylate kinase; phosp 98.6 5.3E-08 1.8E-12 57.8 3.5 22 1-22 16-37 (204)
99 2p65_A Hypothetical protein PF 98.5 1.3E-07 4.4E-12 54.4 4.8 21 1-21 47-67 (187)
100 2qz4_A Paraplegin; AAA+, SPG7, 98.5 6.2E-08 2.1E-12 58.9 3.2 27 1-27 43-69 (262)
101 1lv7_A FTSH; alpha/beta domain 98.5 5.4E-08 1.9E-12 59.4 2.9 27 1-27 49-75 (257)
102 4b4t_I 26S protease regulatory 98.5 6.7E-08 2.3E-12 63.8 3.2 28 1-28 220-247 (437)
103 3a8t_A Adenylate isopentenyltr 98.5 2.9E-08 9.9E-13 63.8 1.4 31 1-31 44-74 (339)
104 4b4t_H 26S protease regulatory 98.5 6.2E-08 2.1E-12 64.5 2.9 28 1-28 247-274 (467)
105 3h4m_A Proteasome-activating n 98.5 7.9E-08 2.7E-12 59.3 3.1 27 1-27 55-81 (285)
106 3b9p_A CG5977-PA, isoform A; A 98.5 8.2E-08 2.8E-12 59.6 3.1 27 1-27 58-84 (297)
107 2r62_A Cell division protease 98.5 7.9E-08 2.7E-12 58.9 2.9 27 1-27 48-74 (268)
108 3cf0_A Transitional endoplasmi 98.5 7.5E-08 2.6E-12 60.4 2.9 35 1-35 53-89 (301)
109 3hws_A ATP-dependent CLP prote 98.5 7.8E-08 2.7E-12 61.5 2.9 28 1-28 55-82 (363)
110 1d2n_A N-ethylmaleimide-sensit 98.5 1.1E-07 3.8E-12 58.5 3.3 28 1-28 68-95 (272)
111 2x8a_A Nuclear valosin-contain 98.5 1.1E-07 3.6E-12 59.2 3.2 28 1-28 48-75 (274)
112 2v1u_A Cell division control p 98.4 6E-07 2.1E-11 56.9 6.5 21 1-21 48-68 (387)
113 1m8p_A Sulfate adenylyltransfe 98.4 1.1E-06 3.7E-11 59.8 8.0 35 1-36 400-440 (573)
114 2jeo_A Uridine-cytidine kinase 98.4 1.9E-07 6.4E-12 56.9 3.8 23 2-24 30-52 (245)
115 3c8u_A Fructokinase; YP_612366 98.4 9.3E-08 3.2E-12 57.0 2.4 30 2-31 27-61 (208)
116 3exa_A TRNA delta(2)-isopenten 98.4 8.9E-08 3E-12 61.1 2.4 31 1-31 7-37 (322)
117 3foz_A TRNA delta(2)-isopenten 98.4 8.8E-08 3E-12 61.0 2.2 30 1-30 14-43 (316)
118 1l8q_A Chromosomal replication 98.4 2.9E-07 9.8E-12 57.9 4.1 34 1-34 41-79 (324)
119 3syl_A Protein CBBX; photosynt 98.4 1.6E-07 5.4E-12 58.5 2.8 31 1-31 71-110 (309)
120 1x6v_B Bifunctional 3'-phospho 98.4 1.2E-06 4.3E-11 60.1 7.4 35 1-35 56-94 (630)
121 1ofh_A ATP-dependent HSL prote 98.4 1.7E-07 5.9E-12 58.1 2.9 26 1-26 54-79 (310)
122 1g41_A Heat shock protein HSLU 98.4 1.7E-07 5.7E-12 62.1 2.9 29 1-29 54-82 (444)
123 1um8_A ATP-dependent CLP prote 98.4 1.7E-07 5.8E-12 60.2 2.9 27 1-27 76-102 (376)
124 2w58_A DNAI, primosome compone 98.4 4.3E-07 1.5E-11 53.5 4.4 36 1-36 58-98 (202)
125 2qp9_X Vacuolar protein sortin 98.4 2E-07 6.8E-12 59.8 3.2 32 1-32 88-121 (355)
126 1ixz_A ATP-dependent metallopr 98.4 2.3E-07 7.8E-12 56.5 3.2 31 1-31 53-85 (254)
127 3tr0_A Guanylate kinase, GMP k 98.4 2.9E-07 9.8E-12 54.2 3.5 21 2-22 12-32 (205)
128 2qby_A CDC6 homolog 1, cell di 98.4 1.9E-06 6.4E-11 54.5 7.4 21 1-21 49-69 (386)
129 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.3E-07 8E-12 58.8 3.1 25 1-25 49-74 (322)
130 3cf2_A TER ATPase, transitiona 98.4 1.2E-06 4.3E-11 61.5 6.9 32 1-32 242-275 (806)
131 4gp7_A Metallophosphoesterase; 98.4 1.9E-06 6.4E-11 50.0 6.7 33 2-37 14-46 (171)
132 3tau_A Guanylate kinase, GMP k 98.3 1.8E-07 6.2E-12 55.8 2.3 22 1-22 12-33 (208)
133 1fnn_A CDC6P, cell division co 98.3 3.1E-06 1E-10 53.8 8.0 69 1-69 48-134 (389)
134 2j41_A Guanylate kinase; GMP, 98.3 2.2E-07 7.5E-12 54.7 2.5 21 1-21 10-30 (207)
135 1in4_A RUVB, holliday junction 98.3 2.9E-07 9.8E-12 58.5 3.1 24 1-24 55-78 (334)
136 1kgd_A CASK, peripheral plasma 98.3 2.4E-07 8.4E-12 54.1 2.6 21 1-21 9-29 (180)
137 1sq5_A Pantothenate kinase; P- 98.3 3.8E-07 1.3E-11 57.5 3.4 30 2-31 85-121 (308)
138 2c9o_A RUVB-like 1; hexameric 98.3 2.9E-07 9.8E-12 60.7 3.0 27 1-27 67-95 (456)
139 3d8b_A Fidgetin-like protein 1 98.3 3.5E-07 1.2E-11 58.6 3.2 26 1-26 121-146 (357)
140 3pfi_A Holliday junction ATP-d 98.3 4.2E-07 1.4E-11 57.3 3.2 28 1-28 59-86 (338)
141 1iy2_A ATP-dependent metallopr 98.3 4.3E-07 1.5E-11 56.1 3.2 27 1-27 77-103 (278)
142 3vfd_A Spastin; ATPase, microt 98.3 4.4E-07 1.5E-11 58.6 3.2 28 1-28 152-179 (389)
143 3eph_A TRNA isopentenyltransfe 98.3 2.6E-07 9E-12 60.6 2.1 30 1-30 6-35 (409)
144 2ce7_A Cell division protein F 98.3 4.9E-07 1.7E-11 60.3 3.2 28 1-28 53-80 (476)
145 1gtv_A TMK, thymidylate kinase 98.3 9.8E-08 3.4E-12 56.6 -0.2 22 1-22 4-25 (214)
146 1g8f_A Sulfate adenylyltransfe 98.3 3.7E-07 1.3E-11 61.4 2.5 30 1-30 399-435 (511)
147 1sxj_A Activator 1 95 kDa subu 98.3 5.6E-07 1.9E-11 60.2 3.2 28 1-28 81-108 (516)
148 3co5_A Putative two-component 98.2 2.3E-07 7.8E-12 52.5 1.1 31 1-31 31-62 (143)
149 3a00_A Guanylate kinase, GMP k 98.2 5.8E-07 2E-11 52.7 2.8 20 2-21 6-25 (186)
150 3v9p_A DTMP kinase, thymidylat 98.2 5.3E-06 1.8E-10 50.6 6.9 39 1-39 29-82 (227)
151 3cf2_A TER ATPase, transitiona 98.2 1.5E-06 5.2E-11 61.1 5.1 51 1-56 515-567 (806)
152 1ye8_A Protein THEP1, hypothet 98.2 6.4E-07 2.2E-11 52.6 2.7 23 1-23 4-26 (178)
153 3bos_A Putative DNA replicatio 98.2 5.7E-07 1.9E-11 53.6 2.6 32 1-32 56-92 (242)
154 2zan_A Vacuolar protein sortin 98.2 6.8E-07 2.3E-11 58.9 3.1 34 1-34 171-207 (444)
155 3tqc_A Pantothenate kinase; bi 98.2 9.2E-07 3.1E-11 56.4 3.5 31 2-32 97-134 (321)
156 3pvs_A Replication-associated 98.2 7.6E-07 2.6E-11 58.9 3.2 28 1-28 54-81 (447)
157 2kjq_A DNAA-related protein; s 98.2 4.1E-07 1.4E-11 52.0 1.4 31 1-31 40-75 (149)
158 2ga8_A Hypothetical 39.9 kDa p 98.2 1.8E-07 6.2E-12 60.5 -0.1 25 1-25 28-52 (359)
159 1ex7_A Guanylate kinase; subst 98.2 7.7E-07 2.6E-11 52.8 2.6 21 1-21 5-25 (186)
160 2z4s_A Chromosomal replication 98.2 1.4E-06 4.7E-11 57.4 3.9 34 1-34 134-174 (440)
161 3n70_A Transport activator; si 98.2 8.5E-07 2.9E-11 50.1 2.6 21 1-21 28-48 (145)
162 1lvg_A Guanylate kinase, GMP k 98.2 1.1E-06 3.7E-11 52.1 2.9 21 1-21 8-28 (198)
163 2qmh_A HPR kinase/phosphorylas 98.2 7.6E-07 2.6E-11 53.6 2.2 28 1-29 38-65 (205)
164 2r44_A Uncharacterized protein 98.2 6.5E-07 2.2E-11 56.4 2.0 26 1-26 50-75 (331)
165 2dhr_A FTSH; AAA+ protein, hex 98.2 9.9E-07 3.4E-11 59.2 2.9 31 1-31 68-100 (499)
166 1hqc_A RUVB; extended AAA-ATPa 98.2 1.1E-06 3.6E-11 55.0 2.9 26 1-26 42-67 (324)
167 3hr8_A Protein RECA; alpha and 98.2 2.5E-06 8.7E-11 55.1 4.6 69 1-69 65-148 (356)
168 3uk6_A RUVB-like 2; hexameric 98.1 9.9E-07 3.4E-11 56.0 2.6 22 1-22 74-95 (368)
169 3hu3_A Transitional endoplasmi 98.1 1.2E-06 4.3E-11 58.5 3.1 32 1-32 242-275 (489)
170 2qgz_A Helicase loader, putati 98.1 1.7E-06 5.8E-11 54.6 3.4 36 1-36 156-197 (308)
171 1odf_A YGR205W, hypothetical 3 98.1 1.2E-06 4E-11 55.1 2.6 31 2-32 36-74 (290)
172 2vhj_A Ntpase P4, P4; non- hyd 98.1 4.9E-06 1.7E-10 53.3 5.4 61 1-69 127-191 (331)
173 1tue_A Replication protein E1; 98.1 9.7E-07 3.3E-11 53.4 2.0 26 1-26 62-87 (212)
174 2chg_A Replication factor C sm 98.1 1.3E-06 4.5E-11 51.1 2.6 21 1-21 42-62 (226)
175 3ney_A 55 kDa erythrocyte memb 98.1 1.4E-06 4.7E-11 52.2 2.6 22 1-22 23-44 (197)
176 1njg_A DNA polymerase III subu 98.1 1.4E-06 4.8E-11 51.5 2.6 22 1-22 49-70 (250)
177 2bjv_A PSP operon transcriptio 98.1 1.3E-06 4.6E-11 53.4 2.5 30 1-30 33-67 (265)
178 4hlc_A DTMP kinase, thymidylat 98.1 2.8E-05 9.6E-10 46.5 8.2 38 2-39 7-54 (205)
179 1rz3_A Hypothetical protein rb 98.1 1.7E-06 5.8E-11 51.2 2.8 31 2-32 27-62 (201)
180 4fcw_A Chaperone protein CLPB; 98.1 1.5E-06 5.2E-11 54.0 2.5 21 1-21 51-71 (311)
181 3m6a_A ATP-dependent protease 98.1 1.9E-06 6.6E-11 58.1 3.1 25 1-25 112-136 (543)
182 1znw_A Guanylate kinase, GMP k 98.1 2.1E-06 7.1E-11 51.0 2.9 20 2-21 25-44 (207)
183 3pxg_A Negative regulator of g 98.1 1.9E-06 6.5E-11 57.1 3.0 21 1-21 205-225 (468)
184 1p5z_B DCK, deoxycytidine kina 98.1 6.3E-07 2.2E-11 55.0 0.6 26 1-26 28-54 (263)
185 1z6g_A Guanylate kinase; struc 98.1 2.2E-06 7.5E-11 51.5 2.9 20 2-21 28-47 (218)
186 3cr8_A Sulfate adenylyltranfer 98.1 1E-06 3.6E-11 59.7 1.4 32 1-32 373-410 (552)
187 2zr9_A Protein RECA, recombina 98.1 5.1E-06 1.7E-10 53.4 4.5 69 1-69 65-148 (349)
188 1s96_A Guanylate kinase, GMP k 98.1 2.2E-06 7.4E-11 51.9 2.6 22 1-22 20-41 (219)
189 2qby_B CDC6 homolog 3, cell di 98.0 2.2E-06 7.6E-11 54.5 2.7 21 1-21 49-69 (384)
190 1w5s_A Origin recognition comp 98.0 9.4E-06 3.2E-10 52.0 5.6 19 3-21 58-76 (412)
191 3lnc_A Guanylate kinase, GMP k 98.0 1.2E-06 4.1E-11 52.8 1.3 20 2-21 32-52 (231)
192 1sxj_C Activator 1 40 kDa subu 98.0 2.1E-06 7.3E-11 54.4 2.5 21 1-21 50-70 (340)
193 2ehv_A Hypothetical protein PH 98.0 2.3E-06 7.9E-11 51.5 2.6 18 1-18 34-51 (251)
194 3u61_B DNA polymerase accessor 98.0 2.2E-06 7.6E-11 53.8 2.6 28 1-28 52-79 (324)
195 2ocp_A DGK, deoxyguanosine kin 98.0 2.9E-06 9.9E-11 51.4 3.0 22 1-22 6-27 (241)
196 4a74_A DNA repair and recombin 98.0 2.4E-06 8.3E-11 50.8 2.5 18 2-19 30-47 (231)
197 1ypw_A Transitional endoplasmi 98.0 2.7E-06 9.2E-11 59.7 2.9 27 1-27 515-541 (806)
198 1ypw_A Transitional endoplasmi 98.0 2.1E-06 7.2E-11 60.3 2.4 28 1-28 242-269 (806)
199 1sxj_D Activator 1 41 kDa subu 98.0 2.6E-06 8.8E-11 53.7 2.6 21 1-21 62-82 (353)
200 1svm_A Large T antigen; AAA+ f 98.0 3.6E-06 1.2E-10 54.7 3.3 27 1-27 173-199 (377)
201 1c9k_A COBU, adenosylcobinamid 98.0 2.4E-06 8.1E-11 50.6 2.2 27 1-28 3-31 (180)
202 1u94_A RECA protein, recombina 98.0 6.7E-06 2.3E-10 53.0 4.5 69 1-69 67-150 (356)
203 3aez_A Pantothenate kinase; tr 98.0 3.4E-06 1.1E-10 53.5 2.9 30 2-31 95-131 (312)
204 1g8p_A Magnesium-chelatase 38 98.0 1.6E-06 5.3E-11 54.7 1.0 22 1-22 49-70 (350)
205 3te6_A Regulatory protein SIR3 98.0 2.1E-06 7.1E-11 54.7 1.5 21 1-21 49-69 (318)
206 3pxi_A Negative regulator of g 98.0 4.3E-06 1.5E-10 58.1 3.0 28 1-28 205-242 (758)
207 2w0m_A SSO2452; RECA, SSPF, un 98.0 4.2E-06 1.4E-10 49.7 2.6 20 1-20 27-46 (235)
208 1xp8_A RECA protein, recombina 97.9 1.1E-05 3.7E-10 52.3 4.6 69 1-69 78-161 (366)
209 1sxj_E Activator 1 40 kDa subu 97.9 3.2E-06 1.1E-10 53.4 2.1 21 1-21 40-60 (354)
210 4edh_A DTMP kinase, thymidylat 97.9 4.5E-06 1.5E-10 50.3 2.6 39 1-39 10-59 (213)
211 1htw_A HI0065; nucleotide-bind 97.9 6.1E-06 2.1E-10 47.6 3.0 20 2-21 38-57 (158)
212 2cvh_A DNA repair and recombin 97.9 4.3E-06 1.5E-10 49.4 2.2 29 1-29 24-54 (220)
213 2i3b_A HCR-ntpase, human cance 97.9 6.2E-06 2.1E-10 48.8 2.9 20 2-21 6-25 (189)
214 3tif_A Uncharacterized ABC tra 97.9 4E-06 1.4E-10 51.1 2.1 19 2-20 36-54 (235)
215 2zts_A Putative uncharacterize 97.9 2.2E-05 7.6E-10 47.1 5.4 18 1-18 34-51 (251)
216 1iqp_A RFCS; clamp loader, ext 97.9 5.3E-06 1.8E-10 51.6 2.6 21 1-21 50-70 (327)
217 2onk_A Molybdate/tungstate ABC 97.9 5.8E-06 2E-10 50.6 2.6 19 2-20 29-47 (240)
218 1r6b_X CLPA protein; AAA+, N-t 97.9 5.8E-06 2E-10 57.3 2.9 31 1-31 492-524 (758)
219 1jr3_A DNA polymerase III subu 97.9 6E-06 2E-10 52.3 2.7 23 1-23 42-64 (373)
220 2eyu_A Twitching motility prot 97.9 6.2E-06 2.1E-10 51.1 2.6 21 1-21 29-49 (261)
221 2qen_A Walker-type ATPase; unk 97.9 8E-06 2.8E-10 51.1 3.2 30 1-30 35-64 (350)
222 2pcj_A ABC transporter, lipopr 97.9 4.5E-06 1.5E-10 50.5 1.9 19 2-20 35-53 (224)
223 3lv8_A DTMP kinase, thymidylat 97.9 3.1E-06 1.1E-10 51.8 1.2 22 1-22 31-52 (236)
224 1lw7_A Transcriptional regulat 97.9 5.7E-06 2E-10 53.1 2.4 22 2-23 175-196 (365)
225 2chq_A Replication factor C sm 97.9 6.5E-06 2.2E-10 51.0 2.5 21 1-21 42-62 (319)
226 3dm5_A SRP54, signal recogniti 97.9 1.2E-05 4E-10 53.4 3.7 21 1-21 104-124 (443)
227 3tmk_A Thymidylate kinase; pho 97.9 7.4E-06 2.5E-10 49.6 2.5 23 1-23 9-31 (216)
228 3gfo_A Cobalt import ATP-bindi 97.9 5.9E-06 2E-10 51.6 2.1 19 2-20 39-57 (275)
229 2orw_A Thymidine kinase; TMTK, 97.8 7.8E-06 2.7E-10 48.1 2.5 21 1-21 7-27 (184)
230 1n0w_A DNA repair protein RAD5 97.8 8.3E-06 2.8E-10 48.9 2.6 19 1-19 28-46 (243)
231 4g1u_C Hemin import ATP-bindin 97.8 6.2E-06 2.1E-10 51.2 2.0 18 2-19 42-59 (266)
232 3io5_A Recombination and repai 97.8 1E-05 3.5E-10 51.9 3.0 31 1-31 32-69 (333)
233 1b0u_A Histidine permease; ABC 97.8 6.6E-06 2.3E-10 50.9 2.1 19 2-20 37-55 (262)
234 3b85_A Phosphate starvation-in 97.8 6.1E-06 2.1E-10 49.6 1.9 18 2-19 27-44 (208)
235 1xjc_A MOBB protein homolog; s 97.8 1.2E-05 4E-10 47.1 2.9 20 2-21 9-28 (169)
236 2d2e_A SUFC protein; ABC-ATPas 97.8 9.2E-06 3.2E-10 49.9 2.6 19 2-20 34-52 (250)
237 2cbz_A Multidrug resistance-as 97.8 7.3E-06 2.5E-10 50.0 2.1 19 2-20 36-54 (237)
238 1g6h_A High-affinity branched- 97.8 7.3E-06 2.5E-10 50.5 2.1 19 2-20 38-56 (257)
239 1sxj_B Activator 1 37 kDa subu 97.8 9.4E-06 3.2E-10 50.4 2.6 21 1-21 46-66 (323)
240 1ojl_A Transcriptional regulat 97.8 7.4E-06 2.5E-10 51.5 2.1 29 1-29 29-62 (304)
241 2v9p_A Replication protein E1; 97.8 1.1E-05 3.9E-10 51.1 2.9 20 2-21 131-150 (305)
242 1ji0_A ABC transporter; ATP bi 97.8 7.7E-06 2.6E-10 50.0 2.1 19 2-20 37-55 (240)
243 1sgw_A Putative ABC transporte 97.8 7.9E-06 2.7E-10 49.3 2.1 19 2-20 40-58 (214)
244 3nbx_X ATPase RAVA; AAA+ ATPas 97.8 5.6E-06 1.9E-10 55.5 1.5 22 1-22 45-66 (500)
245 2dr3_A UPF0273 protein PH0284; 97.8 9.8E-06 3.4E-10 48.6 2.4 29 1-29 27-60 (247)
246 1qvr_A CLPB protein; coiled co 97.8 9.9E-06 3.4E-10 57.0 2.8 21 1-21 195-215 (854)
247 1cr0_A DNA primase/helicase; R 97.8 8.2E-06 2.8E-10 50.7 2.1 20 1-20 39-58 (296)
248 2zu0_C Probable ATP-dependent 97.8 1.1E-05 3.7E-10 50.1 2.6 19 2-20 51-69 (267)
249 1u0j_A DNA replication protein 97.8 1.2E-05 4E-10 50.3 2.7 22 1-22 108-129 (267)
250 2olj_A Amino acid ABC transpor 97.8 8.3E-06 2.8E-10 50.6 2.1 19 2-20 55-73 (263)
251 1rj9_A FTSY, signal recognitio 97.8 1.3E-05 4.4E-10 50.7 3.0 20 2-21 107-126 (304)
252 3pxi_A Negative regulator of g 97.8 1.3E-05 4.5E-10 55.7 3.2 32 1-32 525-561 (758)
253 3tqf_A HPR(Ser) kinase; transf 97.8 1.4E-05 4.8E-10 47.2 2.9 27 1-28 20-46 (181)
254 1mv5_A LMRA, multidrug resista 97.8 8.7E-06 3E-10 49.8 2.1 19 2-20 33-51 (243)
255 2ff7_A Alpha-hemolysin translo 97.8 9E-06 3.1E-10 49.9 2.1 20 2-21 40-59 (247)
256 3ld9_A DTMP kinase, thymidylat 97.8 1.2E-05 4.2E-10 48.9 2.6 38 1-38 25-75 (223)
257 1vpl_A ABC transporter, ATP-bi 97.8 9.1E-06 3.1E-10 50.2 2.1 19 2-20 46-64 (256)
258 3b9q_A Chloroplast SRP recepto 97.8 1.4E-05 4.8E-10 50.4 2.9 20 2-21 105-124 (302)
259 2pze_A Cystic fibrosis transme 97.8 9.7E-06 3.3E-10 49.2 2.1 19 2-20 39-57 (229)
260 2qi9_C Vitamin B12 import ATP- 97.8 1E-05 3.5E-10 49.8 2.1 19 2-20 31-49 (249)
261 2ihy_A ABC transporter, ATP-bi 97.8 1E-05 3.5E-10 50.6 2.1 19 2-20 52-70 (279)
262 2ixe_A Antigen peptide transpo 97.8 1.1E-05 3.6E-10 50.2 2.1 19 2-20 50-68 (271)
263 1np6_A Molybdopterin-guanine d 97.8 1.8E-05 6E-10 46.4 2.9 20 1-20 10-29 (174)
264 2yz2_A Putative ABC transporte 97.8 1.1E-05 3.7E-10 50.0 2.1 19 2-20 38-56 (266)
265 2ghi_A Transport protein; mult 97.8 1.1E-05 3.8E-10 49.8 2.1 19 2-20 51-69 (260)
266 4tmk_A Protein (thymidylate ki 97.7 1.4E-05 4.7E-10 48.2 2.4 21 1-21 7-27 (213)
267 3kta_A Chromosome segregation 97.7 1.2E-05 4.1E-10 46.5 2.1 21 1-21 30-50 (182)
268 1nlf_A Regulatory protein REPA 97.7 1.2E-05 3.9E-10 49.8 2.1 19 1-19 34-52 (279)
269 3fvq_A Fe(3+) IONS import ATP- 97.7 1.4E-05 4.7E-10 51.7 2.5 18 2-19 35-52 (359)
270 3e70_C DPA, signal recognition 97.7 1.8E-05 6E-10 50.6 2.9 20 2-21 134-153 (328)
271 2nq2_C Hypothetical ABC transp 97.7 1.2E-05 4E-10 49.6 2.0 18 2-19 36-53 (253)
272 1vma_A Cell division protein F 97.7 1.6E-05 5.4E-10 50.4 2.6 21 1-21 108-128 (306)
273 2f1r_A Molybdopterin-guanine d 97.7 6.9E-06 2.4E-10 48.0 0.9 20 2-21 7-26 (171)
274 3cmu_A Protein RECA, recombina 97.7 3.5E-05 1.2E-09 58.6 4.7 69 1-69 1431-1514(2050)
275 1z47_A CYSA, putative ABC-tran 97.7 1.8E-05 6E-10 51.2 2.6 18 2-19 46-63 (355)
276 3rlf_A Maltose/maltodextrin im 97.7 1.7E-05 5.9E-10 51.7 2.6 18 2-19 34-51 (381)
277 2ewv_A Twitching motility prot 97.7 1.7E-05 5.8E-10 51.3 2.5 21 1-21 140-160 (372)
278 3k1j_A LON protease, ATP-depen 97.7 1.5E-05 5.2E-10 54.2 2.4 22 1-22 64-85 (604)
279 2r2a_A Uncharacterized protein 97.7 1.8E-05 6.3E-10 47.2 2.4 18 1-18 9-26 (199)
280 2yyz_A Sugar ABC transporter, 97.7 1.8E-05 6.3E-10 51.1 2.6 18 2-19 34-51 (359)
281 2pjz_A Hypothetical protein ST 97.7 1.5E-05 5.1E-10 49.5 2.1 19 2-20 35-53 (263)
282 3sop_A Neuronal-specific septi 97.7 2.2E-05 7.4E-10 48.8 2.8 20 2-21 7-26 (270)
283 3jvv_A Twitching mobility prot 97.7 1.9E-05 6.5E-10 50.9 2.6 21 1-21 127-147 (356)
284 2it1_A 362AA long hypothetical 97.7 2E-05 6.7E-10 51.0 2.6 18 2-19 34-51 (362)
285 1a5t_A Delta prime, HOLB; zinc 97.7 2.2E-05 7.5E-10 49.8 2.7 23 1-23 28-50 (334)
286 1g29_1 MALK, maltose transport 97.7 2.1E-05 7.2E-10 51.0 2.6 18 2-19 34-51 (372)
287 1v43_A Sugar-binding transport 97.7 2.1E-05 7.3E-10 51.0 2.6 18 2-19 42-59 (372)
288 2b8t_A Thymidine kinase; deoxy 97.7 2.3E-05 8E-10 47.6 2.6 21 1-21 16-36 (223)
289 2og2_A Putative signal recogni 97.7 2.6E-05 8.9E-10 50.4 2.9 20 2-21 162-181 (359)
290 2px0_A Flagellar biosynthesis 97.7 2.1E-05 7.3E-10 49.5 2.5 20 1-20 109-128 (296)
291 2gza_A Type IV secretion syste 97.7 1.6E-05 5.4E-10 51.2 1.9 22 1-22 179-200 (361)
292 3tui_C Methionine import ATP-b 97.7 2.2E-05 7.7E-10 50.9 2.6 18 2-19 59-76 (366)
293 1pzn_A RAD51, DNA repair and r 97.7 2.2E-05 7.4E-10 50.4 2.5 20 2-21 136-155 (349)
294 2vp4_A Deoxynucleoside kinase; 97.7 1.2E-05 4E-10 48.5 1.1 21 2-22 25-45 (230)
295 1r6b_X CLPA protein; AAA+, N-t 97.7 2.6E-05 9E-10 54.1 3.0 21 1-21 211-231 (758)
296 2gno_A DNA polymerase III, gam 97.6 0.00015 5.3E-09 45.7 6.1 21 1-21 22-42 (305)
297 1p9r_A General secretion pathw 97.6 3.1E-05 1.1E-09 50.9 2.7 22 1-22 171-192 (418)
298 3d31_A Sulfate/molybdate ABC t 97.6 1.6E-05 5.5E-10 51.2 1.3 18 2-19 31-48 (348)
299 1qvr_A CLPB protein; coiled co 97.6 2.4E-05 8.3E-10 55.1 2.3 21 1-21 592-612 (854)
300 2bbs_A Cystic fibrosis transme 97.6 2.3E-05 7.9E-10 49.2 2.0 19 2-20 69-87 (290)
301 2f9l_A RAB11B, member RAS onco 97.6 2.9E-05 9.8E-10 45.4 2.2 20 1-20 9-28 (199)
302 2qm8_A GTPase/ATPase; G protei 97.6 3.7E-05 1.3E-09 49.1 2.9 19 2-20 60-78 (337)
303 1oix_A RAS-related protein RAB 97.6 3.7E-05 1.3E-09 44.8 2.6 20 1-20 33-52 (191)
304 3gd7_A Fusion complex of cysti 97.6 3.2E-05 1.1E-09 50.5 2.5 18 2-19 52-69 (390)
305 2yhs_A FTSY, cell division pro 97.6 4.2E-05 1.4E-09 51.5 2.9 20 2-21 298-317 (503)
306 2pt7_A CAG-ALFA; ATPase, prote 97.6 2.1E-05 7.3E-10 50.1 1.5 21 1-21 175-195 (330)
307 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.7E-05 1.3E-09 43.8 2.2 19 1-19 27-45 (149)
308 2fna_A Conserved hypothetical 97.6 5.4E-05 1.8E-09 47.4 3.1 29 1-29 34-64 (357)
309 3hjn_A DTMP kinase, thymidylat 97.5 5.6E-05 1.9E-09 44.9 3.0 25 2-26 5-32 (197)
310 1oxx_K GLCV, glucose, ABC tran 97.5 1.6E-05 5.6E-10 51.2 0.6 18 2-19 36-53 (353)
311 2npi_A Protein CLP1; CLP1-PCF1 97.5 4.2E-05 1.4E-09 50.9 2.5 19 2-20 143-161 (460)
312 2www_A Methylmalonic aciduria 97.5 5.4E-05 1.9E-09 48.5 2.9 19 2-20 79-97 (349)
313 3upu_A ATP-dependent DNA helic 97.5 4.4E-05 1.5E-09 50.3 2.5 21 1-21 49-69 (459)
314 2wsm_A Hydrogenase expression/ 97.5 5.1E-05 1.7E-09 44.9 2.5 21 1-21 34-54 (221)
315 3kl4_A SRP54, signal recogniti 97.5 4.2E-05 1.4E-09 50.6 2.3 21 1-21 101-121 (433)
316 3nh6_A ATP-binding cassette SU 97.5 2.1E-05 7.3E-10 49.8 0.8 20 2-21 85-104 (306)
317 2yv5_A YJEQ protein; hydrolase 97.5 5.5E-05 1.9E-09 47.6 2.6 19 2-21 170-188 (302)
318 3lda_A DNA repair protein RAD5 97.5 5.1E-05 1.7E-09 49.7 2.5 18 1-18 182-199 (400)
319 2wji_A Ferrous iron transport 97.5 5.2E-05 1.8E-09 43.1 2.2 19 1-19 7-25 (165)
320 1nij_A Hypothetical protein YJ 97.5 3.5E-05 1.2E-09 48.7 1.7 20 1-20 8-27 (318)
321 3e1s_A Exodeoxyribonuclease V, 97.5 5.2E-05 1.8E-09 51.6 2.5 20 1-20 208-227 (574)
322 3f9v_A Minichromosome maintena 97.5 1.6E-05 5.4E-10 54.3 0.0 23 1-23 331-353 (595)
323 1z6t_A APAF-1, apoptotic prote 97.5 0.0011 3.6E-08 44.6 8.8 76 1-77 151-252 (591)
324 2dyk_A GTP-binding protein; GT 97.5 6.3E-05 2.2E-09 42.0 2.4 21 1-21 5-25 (161)
325 2oap_1 GSPE-2, type II secreti 97.5 4.3E-05 1.5E-09 51.4 1.9 21 1-21 264-284 (511)
326 1z2a_A RAS-related protein RAB 97.5 6.5E-05 2.2E-09 42.2 2.4 20 1-20 9-28 (168)
327 2rcn_A Probable GTPase ENGC; Y 97.4 6.7E-05 2.3E-09 48.5 2.6 20 2-21 220-239 (358)
328 4b3f_X DNA-binding protein smu 97.4 6.6E-05 2.3E-09 51.4 2.5 17 1-17 209-225 (646)
329 2zej_A Dardarin, leucine-rich 97.4 5E-05 1.7E-09 43.9 1.7 19 1-19 6-24 (184)
330 2ce2_X GTPase HRAS; signaling 97.4 7E-05 2.4E-09 41.7 2.3 20 1-20 7-26 (166)
331 1yrb_A ATP(GTP)binding protein 97.4 7.7E-05 2.6E-09 45.2 2.6 20 1-20 18-37 (262)
332 1yqt_A RNAse L inhibitor; ATP- 97.4 7.2E-05 2.5E-09 50.5 2.6 19 2-20 52-70 (538)
333 1xx6_A Thymidine kinase; NESG, 97.4 8.5E-05 2.9E-09 44.1 2.6 21 1-21 12-32 (191)
334 3p32_A Probable GTPase RV1496/ 97.4 9.3E-05 3.2E-09 47.4 2.9 21 1-21 83-103 (355)
335 2z43_A DNA repair and recombin 97.4 6.4E-05 2.2E-09 47.6 2.1 20 1-20 111-130 (324)
336 1kao_A RAP2A; GTP-binding prot 97.4 8.2E-05 2.8E-09 41.6 2.4 20 1-20 7-26 (167)
337 1v5w_A DMC1, meiotic recombina 97.4 6.8E-05 2.3E-09 47.9 2.3 20 1-20 126-145 (343)
338 2hf9_A Probable hydrogenase ni 97.4 8.3E-05 2.8E-09 44.1 2.5 21 1-21 42-62 (226)
339 2wjg_A FEOB, ferrous iron tran 97.4 7.8E-05 2.7E-09 42.8 2.2 19 1-19 11-29 (188)
340 1u0l_A Probable GTPase ENGC; p 97.4 6.1E-05 2.1E-09 47.3 1.9 18 2-19 174-191 (301)
341 3cmw_A Protein RECA, recombina 97.4 0.0002 6.8E-09 54.0 4.7 69 1-69 38-121 (1706)
342 1nrj_B SR-beta, signal recogni 97.4 8.6E-05 2.9E-09 43.8 2.4 21 1-21 16-36 (218)
343 1zu4_A FTSY; GTPase, signal re 97.4 0.00011 3.6E-09 46.8 3.0 20 2-21 110-129 (320)
344 1qhl_A Protein (cell division 97.4 2.7E-05 9.3E-10 47.4 0.2 20 2-21 32-51 (227)
345 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 7.5E-05 2.6E-09 48.1 2.2 18 1-18 27-44 (365)
346 2i1q_A DNA repair and recombin 97.4 7.3E-05 2.5E-09 47.1 2.1 20 1-20 102-121 (322)
347 1u8z_A RAS-related protein RAL 97.4 9.6E-05 3.3E-09 41.3 2.4 20 1-20 8-27 (168)
348 3ozx_A RNAse L inhibitor; ATP 97.4 6.9E-05 2.4E-09 50.7 2.1 19 2-20 30-48 (538)
349 2ged_A SR-beta, signal recogni 97.4 9.2E-05 3.1E-09 42.7 2.4 20 1-20 52-71 (193)
350 2nzj_A GTP-binding protein REM 97.4 8.8E-05 3E-09 41.9 2.2 19 1-19 8-26 (175)
351 1tf7_A KAIC; homohexamer, hexa 97.4 7.4E-05 2.5E-09 50.1 2.1 17 1-17 43-59 (525)
352 2obl_A ESCN; ATPase, hydrolase 97.4 0.00011 3.9E-09 47.2 2.9 21 2-22 76-96 (347)
353 2gj8_A MNME, tRNA modification 97.4 8.6E-05 2.9E-09 42.6 2.1 20 1-20 8-27 (172)
354 1ko7_A HPR kinase/phosphatase; 97.4 0.00012 4.1E-09 46.6 2.9 27 1-28 148-174 (314)
355 3bh0_A DNAB-like replicative h 97.4 8.5E-05 2.9E-09 46.9 2.2 28 1-28 72-104 (315)
356 2qag_B Septin-6, protein NEDD5 97.4 8.3E-05 2.8E-09 49.1 2.2 19 2-20 47-65 (427)
357 1tq4_A IIGP1, interferon-induc 97.3 9.5E-05 3.2E-09 48.6 2.5 18 2-19 74-91 (413)
358 1ek0_A Protein (GTP-binding pr 97.3 0.00011 3.6E-09 41.3 2.4 20 1-20 7-26 (170)
359 1z0j_A RAB-22, RAS-related pro 97.3 9.2E-05 3.2E-09 41.6 2.1 20 1-20 10-29 (170)
360 3q85_A GTP-binding protein REM 97.3 0.0001 3.4E-09 41.5 2.2 18 1-18 6-23 (169)
361 1ky3_A GTP-binding protein YPT 97.3 0.00011 3.7E-09 41.7 2.4 20 1-20 12-31 (182)
362 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00011 3.7E-09 41.7 2.4 19 1-19 11-29 (177)
363 1g16_A RAS-related protein SEC 97.3 0.0001 3.6E-09 41.4 2.3 19 1-19 7-25 (170)
364 3euj_A Chromosome partition pr 97.3 0.00011 3.6E-09 49.3 2.6 20 2-21 34-53 (483)
365 2erx_A GTP-binding protein DI- 97.3 0.0001 3.5E-09 41.4 2.2 19 1-19 7-25 (172)
366 2v3c_C SRP54, signal recogniti 97.3 7.3E-05 2.5E-09 49.4 1.8 21 1-21 103-123 (432)
367 3cmw_A Protein RECA, recombina 97.3 0.00026 8.7E-09 53.4 4.7 69 1-69 736-819 (1706)
368 3qks_A DNA double-strand break 97.3 0.0001 3.5E-09 43.8 2.2 21 1-21 27-47 (203)
369 1z08_A RAS-related protein RAB 97.3 0.00012 4E-09 41.3 2.4 20 1-20 10-29 (170)
370 1c1y_A RAS-related protein RAP 97.3 0.00012 4.1E-09 41.0 2.4 20 1-20 7-26 (167)
371 2dpy_A FLII, flagellum-specifi 97.3 0.00013 4.4E-09 48.2 2.9 21 2-22 162-182 (438)
372 2hxs_A RAB-26, RAS-related pro 97.3 0.00011 3.9E-09 41.6 2.3 19 1-19 10-28 (178)
373 3j16_B RLI1P; ribosome recycli 97.3 0.00011 3.8E-09 50.4 2.6 19 2-20 108-126 (608)
374 3q72_A GTP-binding protein RAD 97.3 9.5E-05 3.2E-09 41.5 1.9 18 1-18 6-23 (166)
375 1pui_A ENGB, probable GTP-bind 97.3 5E-05 1.7E-09 44.5 0.7 19 1-19 30-48 (210)
376 3t1o_A Gliding protein MGLA; G 97.3 0.00013 4.5E-09 41.9 2.4 22 1-22 18-39 (198)
377 1r2q_A RAS-related protein RAB 97.3 0.00013 4.6E-09 40.8 2.4 19 1-19 10-28 (170)
378 3bc1_A RAS-related protein RAB 97.3 0.00013 4.6E-09 41.7 2.4 19 1-19 15-33 (195)
379 1r8s_A ADP-ribosylation factor 97.3 0.00015 5E-09 40.6 2.5 20 1-20 4-23 (164)
380 3b5x_A Lipid A export ATP-bind 97.3 0.00011 3.7E-09 49.9 2.3 20 2-21 374-393 (582)
381 3con_A GTPase NRAS; structural 97.3 0.00014 4.8E-09 41.9 2.4 20 1-20 25-44 (190)
382 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00013 4.5E-09 49.2 2.6 18 2-19 317-334 (538)
383 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00014 4.8E-09 41.6 2.4 20 1-20 8-27 (189)
384 2p67_A LAO/AO transport system 97.3 0.00016 5.3E-09 46.2 2.8 19 2-20 61-79 (341)
385 1z0f_A RAB14, member RAS oncog 97.3 0.00015 5.1E-09 41.1 2.4 20 1-20 19-38 (179)
386 4ag6_A VIRB4 ATPase, type IV s 97.3 0.00014 4.9E-09 46.9 2.6 20 1-20 39-58 (392)
387 3clv_A RAB5 protein, putative; 97.3 0.00015 5E-09 41.8 2.4 20 1-20 11-30 (208)
388 1upt_A ARL1, ADP-ribosylation 97.3 0.00015 5.2E-09 40.8 2.4 19 1-19 11-29 (171)
389 1m7b_A RND3/RHOE small GTP-bin 97.3 0.00014 4.7E-09 41.9 2.3 20 1-20 11-30 (184)
390 3b60_A Lipid A export ATP-bind 97.3 0.0001 3.4E-09 50.1 1.9 20 2-21 374-393 (582)
391 2fn4_A P23, RAS-related protei 97.3 0.00014 4.8E-09 41.2 2.2 20 1-20 13-32 (181)
392 1svi_A GTP-binding protein YSX 97.3 0.00012 4.2E-09 42.2 2.0 20 1-20 27-46 (195)
393 1tf7_A KAIC; homohexamer, hexa 97.3 0.00012 3.9E-09 49.2 2.1 20 1-20 285-304 (525)
394 3tw8_B RAS-related protein RAB 97.3 0.00013 4.4E-09 41.4 2.0 19 1-19 13-31 (181)
395 3ozx_A RNAse L inhibitor; ATP 97.3 0.00011 3.9E-09 49.6 2.1 18 2-19 299-316 (538)
396 2r6a_A DNAB helicase, replicat 97.3 0.00015 5E-09 47.9 2.5 19 1-19 207-225 (454)
397 3bk7_A ABC transporter ATP-bin 97.2 0.00015 5E-09 49.7 2.6 18 2-19 387-404 (607)
398 3bk7_A ABC transporter ATP-bin 97.2 0.00012 4E-09 50.2 2.1 18 2-19 122-139 (607)
399 2cxx_A Probable GTP-binding pr 97.2 0.00013 4.5E-09 41.8 2.0 20 1-20 5-24 (190)
400 1ls1_A Signal recognition part 97.2 0.00019 6.7E-09 45.0 2.9 20 2-21 103-122 (295)
401 2y8e_A RAB-protein 6, GH09086P 97.2 0.00014 4.8E-09 41.2 2.1 19 1-19 18-36 (179)
402 2lkc_A Translation initiation 97.2 0.00015 5.1E-09 41.2 2.2 19 1-19 12-30 (178)
403 3qkt_A DNA double-strand break 97.2 0.00014 4.6E-09 46.3 2.2 18 1-18 27-44 (339)
404 2r8r_A Sensor protein; KDPD, P 97.2 0.00018 6.1E-09 44.0 2.6 20 1-20 10-29 (228)
405 3sfz_A APAF-1, apoptotic pepti 97.2 0.0012 4.2E-08 47.2 7.2 19 2-20 152-170 (1249)
406 3kkq_A RAS-related protein M-R 97.2 0.00015 5.1E-09 41.4 2.2 20 1-20 22-41 (183)
407 2bme_A RAB4A, RAS-related prot 97.2 0.00016 5.4E-09 41.4 2.3 20 1-20 14-33 (186)
408 2qnr_A Septin-2, protein NEDD5 97.2 0.00013 4.6E-09 45.8 2.1 18 1-18 22-39 (301)
409 2a9k_A RAS-related protein RAL 97.2 0.00017 5.9E-09 41.1 2.4 20 1-20 22-41 (187)
410 2oil_A CATX-8, RAS-related pro 97.2 0.00017 5.9E-09 41.6 2.4 19 1-19 29-47 (193)
411 1m2o_B GTP-binding protein SAR 97.2 0.00016 5.6E-09 42.0 2.3 19 1-19 27-45 (190)
412 2gk6_A Regulator of nonsense t 97.2 0.00016 5.6E-09 49.4 2.5 20 1-20 199-218 (624)
413 2efe_B Small GTP-binding prote 97.2 0.00018 6.2E-09 40.9 2.4 20 1-20 16-35 (181)
414 1knx_A Probable HPR(Ser) kinas 97.2 0.0002 6.8E-09 45.6 2.7 27 1-28 151-177 (312)
415 3k53_A Ferrous iron transport 97.2 0.00018 6E-09 44.3 2.4 20 1-20 7-26 (271)
416 3cmu_A Protein RECA, recombina 97.2 0.00038 1.3E-08 53.2 4.5 69 1-69 387-470 (2050)
417 2g6b_A RAS-related protein RAB 97.2 0.00019 6.5E-09 40.8 2.4 20 1-20 14-33 (180)
418 3pqc_A Probable GTP-binding pr 97.2 0.00016 5.3E-09 41.6 2.0 20 1-20 27-46 (195)
419 1j8m_F SRP54, signal recogniti 97.2 0.00014 4.8E-09 45.8 1.9 20 2-21 103-122 (297)
420 1mh1_A RAC1; GTP-binding, GTPa 97.2 0.0002 6.9E-09 40.8 2.4 19 1-19 9-27 (186)
421 1w36_D RECD, exodeoxyribonucle 97.2 0.00019 6.4E-09 49.1 2.5 20 1-20 168-187 (608)
422 3j16_B RLI1P; ribosome recycli 97.2 0.0002 6.7E-09 49.2 2.6 18 2-19 383-400 (608)
423 3tkl_A RAS-related protein RAB 97.2 0.00021 7.3E-09 41.2 2.4 20 1-20 20-39 (196)
424 3ihw_A Centg3; RAS, centaurin, 97.2 0.00021 7.2E-09 41.3 2.4 20 1-20 24-43 (184)
425 2j37_W Signal recognition part 97.2 0.00021 7.1E-09 48.1 2.6 20 2-21 106-125 (504)
426 1vg8_A RAS-related protein RAB 97.2 0.00021 7.3E-09 41.6 2.4 20 1-20 12-31 (207)
427 2bov_A RAla, RAS-related prote 97.2 0.00022 7.4E-09 41.4 2.4 20 1-20 18-37 (206)
428 3lxx_A GTPase IMAP family memb 97.2 0.00019 6.5E-09 43.2 2.2 20 1-20 33-52 (239)
429 3dz8_A RAS-related protein RAB 97.2 0.00022 7.5E-09 41.2 2.4 21 1-21 27-47 (191)
430 2gf9_A RAS-related protein RAB 97.2 0.00022 7.7E-09 41.1 2.4 20 1-20 26-45 (189)
431 1ega_A Protein (GTP-binding pr 97.1 0.00023 8E-09 44.6 2.6 18 2-19 13-30 (301)
432 3t5g_A GTP-binding protein RHE 97.1 0.0002 7E-09 40.8 2.1 19 1-19 10-28 (181)
433 2atv_A RERG, RAS-like estrogen 97.1 0.00024 8.2E-09 41.2 2.4 20 1-20 32-51 (196)
434 2yl4_A ATP-binding cassette SU 97.1 0.00012 4E-09 49.8 1.2 20 2-21 375-394 (595)
435 3bwd_D RAC-like GTP-binding pr 97.1 0.00025 8.5E-09 40.3 2.4 20 1-20 12-31 (182)
436 1x3s_A RAS-related protein RAB 97.1 0.00025 8.4E-09 40.8 2.4 20 1-20 19-38 (195)
437 1fzq_A ADP-ribosylation factor 97.1 0.00019 6.6E-09 41.3 1.9 20 1-20 20-39 (181)
438 1zbd_A Rabphilin-3A; G protein 97.1 0.00023 7.7E-09 41.4 2.2 19 1-19 12-30 (203)
439 1p6x_A Thymidine kinase; P-loo 97.1 0.00022 7.6E-09 45.7 2.3 21 2-22 12-32 (334)
440 1vt4_I APAF-1 related killer D 97.1 0.0045 1.5E-07 45.5 9.1 18 2-19 155-172 (1221)
441 2fg5_A RAB-22B, RAS-related pr 97.1 0.00024 8.2E-09 41.2 2.2 20 1-20 27-46 (192)
442 3szr_A Interferon-induced GTP- 97.1 0.0002 6.7E-09 49.0 2.1 18 2-19 50-67 (608)
443 2a5j_A RAS-related protein RAB 97.1 0.00026 9E-09 40.9 2.4 19 1-19 25-43 (191)
444 3oes_A GTPase rhebl1; small GT 97.1 0.00025 8.4E-09 41.4 2.3 20 1-20 28-47 (201)
445 3qf4_B Uncharacterized ABC tra 97.1 0.00012 4.1E-09 49.9 1.0 20 2-21 386-405 (598)
446 1z06_A RAS-related protein RAB 97.1 0.00026 9E-09 40.8 2.4 19 1-19 24-42 (189)
447 2qag_C Septin-7; cell cycle, c 97.1 0.0002 6.9E-09 47.1 2.1 20 1-20 35-54 (418)
448 1ksh_A ARF-like protein 2; sma 97.1 0.00023 7.7E-09 40.8 2.1 19 1-19 22-40 (186)
449 1zd9_A ADP-ribosylation factor 97.1 0.00027 9.2E-09 40.8 2.4 19 1-19 26-44 (188)
450 3c5c_A RAS-like protein 12; GD 97.1 0.00026 9E-09 40.9 2.4 20 1-20 25-44 (187)
451 1t9h_A YLOQ, probable GTPase E 97.1 6.3E-05 2.2E-09 47.7 -0.4 18 2-19 178-195 (307)
452 1gwn_A RHO-related GTP-binding 97.1 0.00026 8.7E-09 41.8 2.3 20 1-20 32-51 (205)
453 2gf0_A GTP-binding protein DI- 97.1 0.00026 8.8E-09 40.9 2.2 19 1-19 12-30 (199)
454 2bcg_Y Protein YP2, GTP-bindin 97.1 0.00026 8.8E-09 41.3 2.3 19 1-19 12-30 (206)
455 2p5s_A RAS and EF-hand domain 97.1 0.00028 9.5E-09 41.1 2.4 20 1-20 32-51 (199)
456 1moz_A ARL1, ADP-ribosylation 97.1 0.00014 4.6E-09 41.6 1.0 18 1-18 22-39 (183)
457 2q6t_A DNAB replication FORK h 97.1 0.00025 8.6E-09 46.6 2.4 28 1-28 204-237 (444)
458 3reg_A RHO-like small GTPase; 97.1 0.00029 9.8E-09 40.8 2.4 20 1-20 27-46 (194)
459 4a82_A Cystic fibrosis transme 97.1 9.1E-05 3.1E-09 50.3 0.2 20 2-21 372-391 (578)
460 2fh5_B SR-beta, signal recogni 97.1 0.0003 1E-08 41.3 2.4 20 1-20 11-30 (214)
461 2ew1_A RAS-related protein RAB 97.1 0.00028 9.6E-09 41.5 2.3 19 1-19 30-48 (201)
462 2iwr_A Centaurin gamma 1; ANK 97.1 0.00019 6.4E-09 40.9 1.4 20 1-20 11-30 (178)
463 1f6b_A SAR1; gtpases, N-termin 97.1 0.00019 6.6E-09 42.0 1.5 19 1-19 29-47 (198)
464 1zj6_A ADP-ribosylation factor 97.1 0.00027 9.3E-09 40.6 2.1 19 1-19 20-38 (187)
465 2cjw_A GTP-binding protein GEM 97.1 0.00036 1.2E-08 40.6 2.7 19 1-19 10-28 (192)
466 3cph_A RAS-related protein SEC 97.1 0.00032 1.1E-08 41.0 2.4 19 1-19 24-42 (213)
467 1ewq_A DNA mismatch repair pro 97.0 0.00025 8.4E-09 49.9 2.2 19 1-19 580-598 (765)
468 2iw3_A Elongation factor 3A; a 97.0 0.00031 1.1E-08 50.6 2.6 18 2-19 466-483 (986)
469 2wjy_A Regulator of nonsense t 97.0 0.00031 1.1E-08 49.5 2.5 20 1-20 375-394 (800)
470 1zcb_A G alpha I/13; GTP-bindi 97.0 0.00027 9.3E-09 45.7 2.1 21 1-21 37-57 (362)
471 2o52_A RAS-related protein RAB 97.0 0.0003 1E-08 41.1 2.1 18 1-18 29-46 (200)
472 2j9r_A Thymidine kinase; TK1, 97.0 0.00038 1.3E-08 42.1 2.6 21 1-21 32-52 (214)
473 1e69_A Chromosome segregation 97.0 0.0002 6.7E-09 45.3 1.3 18 1-18 28-45 (322)
474 3qf4_A ABC transporter, ATP-bi 97.0 0.00014 4.8E-09 49.5 0.7 20 2-21 374-393 (587)
475 1wb9_A DNA mismatch repair pro 97.0 0.00028 9.6E-09 49.8 2.2 19 1-19 611-629 (800)
476 3cbq_A GTP-binding protein REM 97.0 0.00023 7.9E-09 41.6 1.6 18 1-18 27-44 (195)
477 2xtp_A GTPase IMAP family memb 97.0 0.0003 1E-08 42.8 2.1 20 1-20 26-45 (260)
478 2ffh_A Protein (FFH); SRP54, s 97.0 0.00036 1.2E-08 46.0 2.6 20 2-21 103-122 (425)
479 2o5v_A DNA replication and rep 97.0 0.00032 1.1E-08 45.3 2.2 18 1-18 30-47 (359)
480 2b6h_A ADP-ribosylation factor 97.0 0.0003 1E-08 40.9 1.9 19 1-19 33-51 (192)
481 2fv8_A H6, RHO-related GTP-bin 97.0 0.00035 1.2E-08 41.0 2.2 19 1-19 29-47 (207)
482 2q3h_A RAS homolog gene family 97.0 0.00036 1.2E-08 40.5 2.2 19 1-19 24-42 (201)
483 4a1f_A DNAB helicase, replicat 97.0 0.00037 1.3E-08 44.7 2.4 28 1-28 50-82 (338)
484 2il1_A RAB12; G-protein, GDP, 97.0 0.00034 1.2E-08 40.6 2.1 18 1-18 30-47 (192)
485 2f7s_A C25KG, RAS-related prot 97.0 0.00036 1.2E-08 41.0 2.2 19 1-19 29-47 (217)
486 1w1w_A Structural maintenance 97.0 0.00033 1.1E-08 45.8 2.2 21 1-21 30-50 (430)
487 2h17_A ADP-ribosylation factor 97.0 0.00028 9.6E-09 40.4 1.7 19 1-19 25-43 (181)
488 2fu5_C RAS-related protein RAB 97.0 0.00017 5.7E-09 41.2 0.7 19 1-19 12-30 (183)
489 2gco_A H9, RHO-related GTP-bin 97.0 0.0004 1.4E-08 40.5 2.3 20 1-20 29-48 (201)
490 2atx_A Small GTP binding prote 97.0 0.0004 1.4E-08 40.1 2.2 20 1-20 22-41 (194)
491 2j1l_A RHO-related GTP-binding 97.0 0.00037 1.3E-08 41.2 2.1 19 1-19 38-56 (214)
492 2hup_A RAS-related protein RAB 97.0 0.00041 1.4E-08 40.6 2.2 19 1-19 33-51 (201)
493 4bas_A ADP-ribosylation factor 96.9 0.00037 1.3E-08 40.2 2.0 19 1-19 21-39 (199)
494 2xxa_A Signal recognition part 96.9 0.00045 1.5E-08 45.6 2.6 19 2-20 105-123 (433)
495 2j0v_A RAC-like GTP-binding pr 96.9 0.00044 1.5E-08 40.5 2.3 20 1-20 13-32 (212)
496 4gzl_A RAS-related C3 botulinu 96.9 0.00044 1.5E-08 40.5 2.3 19 1-19 34-52 (204)
497 3bgw_A DNAB-like replicative h 96.9 0.00041 1.4E-08 45.9 2.3 28 1-28 201-233 (444)
498 3lxw_A GTPase IMAP family memb 96.9 0.00042 1.4E-08 42.2 2.2 19 1-19 25-43 (247)
499 2qu8_A Putative nucleolar GTP- 96.9 0.0004 1.4E-08 41.4 2.1 19 1-19 33-51 (228)
500 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00047 1.6E-08 45.1 2.6 18 2-19 25-42 (392)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.94 E-value=4.7e-27 Score=142.05 Aligned_cols=79 Identities=33% Similarity=0.717 Sum_probs=72.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~~~~~iid 67 (82)
+|+|||||||+|+|+.|+++||++|+|++|++|++...+ |..+|++++.+++.+++.+ ..+||+|
T Consensus 4 il~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~--~~~~ilD 81 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK--HGNVIFD 81 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS--SSCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc--CCceEec
Confidence 578999999999999999999999999999999987654 9999999999999999865 4679999
Q ss_pred CCCCCHHHHHHHHh
Q 035937 68 GFPRSEENRAAFER 81 (82)
Q Consensus 68 g~p~~~~~~~~~~~ 81 (82)
|||||..|++.|.+
T Consensus 82 GfPRt~~Qa~~l~~ 95 (206)
T 3sr0_A 82 GFPRTVKQAEALDE 95 (206)
T ss_dssp SCCCSHHHHHHHHH
T ss_pred CCchhHHHHHHHHh
Confidence 99999999998853
No 2
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.94 E-value=7.1e-27 Score=142.25 Aligned_cols=81 Identities=47% Similarity=0.881 Sum_probs=73.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC--CCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD--NHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~--~~~~i 65 (82)
+|+|||||||+|+|+.|+++|+++|+|++|++|++...+ |..+|++++.+++.+++.+.. ..+||
T Consensus 33 ~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~~~~g~i 112 (217)
T 3umf_A 33 FVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVDKNCHFL 112 (217)
T ss_dssp EEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccccccCcc
Confidence 478999999999999999999999999999999987653 899999999999999997643 67999
Q ss_pred EeCCCCCHHHHHHHHh
Q 035937 66 INGFPRSEENRAAFER 81 (82)
Q Consensus 66 idg~p~~~~~~~~~~~ 81 (82)
+|||||+..|++.|.+
T Consensus 113 lDGfPRt~~Qa~~l~~ 128 (217)
T 3umf_A 113 IDGYPRELDQGIKFEK 128 (217)
T ss_dssp EETBCSSHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHH
Confidence 9999999999999864
No 3
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.92 E-value=2.7e-24 Score=131.76 Aligned_cols=80 Identities=36% Similarity=0.765 Sum_probs=72.9
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC-CCeEEEe
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD-NHKFLIN 67 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~-~~~~iid 67 (82)
|+|+|||||||+|+.|+++|++++++++|++|++...+ +..+|++++.+++.+++.+.+ .++||+|
T Consensus 13 ~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~ILD 92 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFD 92 (230)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCEEEE
T ss_pred eECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCeEec
Confidence 68999999999999999999999999999999975432 889999999999999998865 6799999
Q ss_pred CCCCCHHHHHHHHh
Q 035937 68 GFPRSEENRAAFER 81 (82)
Q Consensus 68 g~p~~~~~~~~~~~ 81 (82)
|||++..|++.|++
T Consensus 93 GfPRt~~Qa~~L~~ 106 (230)
T 3gmt_A 93 GFPRTIAQADAMKE 106 (230)
T ss_dssp SCCCSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999999998864
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.84 E-value=2.2e-20 Score=114.74 Aligned_cols=81 Identities=32% Similarity=0.676 Sum_probs=71.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|+|+|||||||+|+.|++++++.+++.++++++.... .+..++++.+..++.+.+...+ ..+||+
T Consensus 33 ~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~il 112 (243)
T 3tlx_A 33 IFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCKKGFIL 112 (243)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGGSSEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccccCCEEe
Confidence 47999999999999999999999999999999997543 2778899999999999998765 789999
Q ss_pred eCCCCCHHHHHHHHh
Q 035937 67 NGFPRSEENRAAFER 81 (82)
Q Consensus 67 dg~p~~~~~~~~~~~ 81 (82)
||||++..|++.|.+
T Consensus 113 dg~p~~~~q~~~l~~ 127 (243)
T 3tlx_A 113 DGYPRNVKQAEDLNK 127 (243)
T ss_dssp ESCCCSHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999999999988754
No 5
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.83 E-value=8.6e-20 Score=109.70 Aligned_cols=81 Identities=40% Similarity=0.820 Sum_probs=70.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|+|+|||||||+|+.|++++++.+++.++++++....+ +..++++.+..++.+.+...+ ..+||+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~il 83 (216)
T 3dl0_A 4 VLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGFLL 83 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCEEE
Confidence 479999999999999999999999999999999865432 667888888899999988765 788999
Q ss_pred eCCCCCHHHHHHHHh
Q 035937 67 NGFPRSEENRAAFER 81 (82)
Q Consensus 67 dg~p~~~~~~~~~~~ 81 (82)
||+|++..|++.+.+
T Consensus 84 dg~p~~~~~~~~~~~ 98 (216)
T 3dl0_A 84 DGFPRTVAQAEALEE 98 (216)
T ss_dssp ESCCCSHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 999999999887754
No 6
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.82 E-value=1.4e-19 Score=108.69 Aligned_cols=81 Identities=37% Similarity=0.786 Sum_probs=70.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|+|+|||||||+|+.|++++++.+++.++++++....+ +..++++.+..++.+.+.... ..+||+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~il 83 (216)
T 3fb4_A 4 VLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLL 83 (216)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcEEE
Confidence 479999999999999999999999999999999865432 667888888899999997765 778999
Q ss_pred eCCCCCHHHHHHHHh
Q 035937 67 NGFPRSEENRAAFER 81 (82)
Q Consensus 67 dg~p~~~~~~~~~~~ 81 (82)
||+|++..|++.+.+
T Consensus 84 dg~p~~~~~~~~l~~ 98 (216)
T 3fb4_A 84 DGFPRTVAQADALDS 98 (216)
T ss_dssp ESCCCSHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 999999999887754
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.82 E-value=2.3e-19 Score=108.33 Aligned_cols=80 Identities=39% Similarity=0.768 Sum_probs=68.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|.|+|||||||+|+.|++++++.++++++++++....+ +..++++...+++.+.+.... +.+||+
T Consensus 9 ~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~ 88 (217)
T 3be4_A 9 ILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVL 88 (217)
T ss_dssp EEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEE
Confidence 478999999999999999999999999999999764321 567788888888888887654 678999
Q ss_pred eCCCCCHHHHHHHH
Q 035937 67 NGFPRSEENRAAFE 80 (82)
Q Consensus 67 dg~p~~~~~~~~~~ 80 (82)
||+|++..|++.+.
T Consensus 89 dg~~~~~~~~~~l~ 102 (217)
T 3be4_A 89 DGFPRTIPQAEGLA 102 (217)
T ss_dssp ESCCCSHHHHHHHH
T ss_pred eCCCCCHHHHHHHH
Confidence 99999988888765
No 8
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.81 E-value=2.9e-19 Score=108.83 Aligned_cols=80 Identities=43% Similarity=0.788 Sum_probs=68.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|.|+|||||||+|+.|++++++.++++++++++.... .+..++++...+++.+.+.... +.+||+
T Consensus 20 ~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~g~il 99 (233)
T 1ak2_A 20 VLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLL 99 (233)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccccCcEEE
Confidence 47899999999999999999999999999999885322 2667888988889988887654 678999
Q ss_pred eCCCCCHHHHHHHH
Q 035937 67 NGFPRSEENRAAFE 80 (82)
Q Consensus 67 dg~p~~~~~~~~~~ 80 (82)
||||++..|++.|.
T Consensus 100 dg~~~~~~~~~~l~ 113 (233)
T 1ak2_A 100 DGFPRTVRQAEMLD 113 (233)
T ss_dssp ESCCCSHHHHHHHH
T ss_pred eCCCCCHHHHHHHH
Confidence 99999998887664
No 9
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.80 E-value=6.1e-19 Score=106.11 Aligned_cols=80 Identities=38% Similarity=0.741 Sum_probs=67.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|+|+|||||||+|+.|++.+++.++++++++++....+ +..++++.+.+++.+.+.... ..+||+
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~i~ 83 (214)
T 1e4v_A 4 ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLL 83 (214)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCEEE
Confidence 479999999999999999999999999999999864322 456788888888888887654 468999
Q ss_pred eCCCCCHHHHHHHH
Q 035937 67 NGFPRSEENRAAFE 80 (82)
Q Consensus 67 dg~p~~~~~~~~~~ 80 (82)
||+|++..|++.|.
T Consensus 84 dg~~~~~~~~~~l~ 97 (214)
T 1e4v_A 84 DGFPRTIPQADAMK 97 (214)
T ss_dssp ESCCCSHHHHHHHH
T ss_pred eCCCCCHHHHHHHH
Confidence 99999998887764
No 10
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.79 E-value=6.9e-19 Score=106.16 Aligned_cols=80 Identities=33% Similarity=0.725 Sum_probs=66.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHh-cCC-CCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIE-SSD-NHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~-~~~-~~~~i 65 (82)
+|+|+|||||||+|+.|++.+++.+++.++++++.... .+...+++.+..++.+.+. ... +.+||
T Consensus 8 ~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~i 87 (220)
T 1aky_A 8 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFI 87 (220)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccccCCCeE
Confidence 47899999999999999999999999999999975321 2567788888888888886 333 56899
Q ss_pred EeCCCCCHHHHHHHH
Q 035937 66 INGFPRSEENRAAFE 80 (82)
Q Consensus 66 idg~p~~~~~~~~~~ 80 (82)
+||||++..|++.+.
T Consensus 88 ~dg~~~~~~~~~~l~ 102 (220)
T 1aky_A 88 LDGFPRTIPQAEKLD 102 (220)
T ss_dssp EESCCCSHHHHHHHH
T ss_pred EeCCCCCHHHHHHHH
Confidence 999999998887654
No 11
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.77 E-value=3e-18 Score=103.91 Aligned_cols=80 Identities=30% Similarity=0.642 Sum_probs=66.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~~~~~iid 67 (82)
+|.|+|||||||+++.|++.+++.++++++++++.... .+...+.+.+.+++.+.+...++.+||+|
T Consensus 4 ~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~vIlD 83 (223)
T 2xb4_A 4 LIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGWLLD 83 (223)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeEEEe
Confidence 47899999999999999999999999999999986321 25667888888888888865335689999
Q ss_pred CCCCCHHHHHHHH
Q 035937 68 GFPRSEENRAAFE 80 (82)
Q Consensus 68 g~p~~~~~~~~~~ 80 (82)
|+|++..|++.+.
T Consensus 84 g~~~~~~~~~~l~ 96 (223)
T 2xb4_A 84 GFPRNTVQAQKLF 96 (223)
T ss_dssp SCCCSHHHHHHHH
T ss_pred CCcCCHHHHHHHH
Confidence 9999988888774
No 12
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.76 E-value=6.9e-18 Score=100.49 Aligned_cols=80 Identities=38% Similarity=0.783 Sum_probs=64.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------------CCcCCHHHHHHHHHHHHhcCC-CCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------------RKIVPSEVTISLIRKEIESSD-NHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~i~~~~-~~~~ii 66 (82)
+|+|+|||||||+|+.|++.+++++++.++++++....+ +...+.+....++.+.+.... +.+||+
T Consensus 24 ~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vIl 103 (201)
T 2cdn_A 24 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGFIL 103 (201)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhcccCCCeEEE
Confidence 478999999999999999999999999999998743221 556777777777777775443 668999
Q ss_pred eCCCCCHHHHHHHH
Q 035937 67 NGFPRSEENRAAFE 80 (82)
Q Consensus 67 dg~p~~~~~~~~~~ 80 (82)
||+|++..+++.+.
T Consensus 104 dg~~~~~~~~~~l~ 117 (201)
T 2cdn_A 104 DGYPRSVEQAKALH 117 (201)
T ss_dssp ESCCCSHHHHHHHH
T ss_pred ECCCCCHHHHHHHH
Confidence 99999988887664
No 13
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.76 E-value=5e-18 Score=102.49 Aligned_cols=80 Identities=44% Similarity=0.863 Sum_probs=64.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCC--CCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSD--NHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~--~~~~i 65 (82)
+|.|+|||||||+++.|++++++.+++.++++++.... .+...+++.+..++.+.+.... ..+||
T Consensus 9 ~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 88 (222)
T 1zak_A 9 MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQENGWL 88 (222)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHHTCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccccCCcEE
Confidence 47899999999999999999999999999999884321 2567788877777777665422 46799
Q ss_pred EeCCCCCHHHHHHHH
Q 035937 66 INGFPRSEENRAAFE 80 (82)
Q Consensus 66 idg~p~~~~~~~~~~ 80 (82)
+||+|++..+++.+.
T Consensus 89 idg~~~~~~~~~~l~ 103 (222)
T 1zak_A 89 LDGYPRSYSQAMALE 103 (222)
T ss_dssp EESCCCSHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 999999998888775
No 14
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.75 E-value=1.8e-17 Score=100.41 Aligned_cols=81 Identities=38% Similarity=0.739 Sum_probs=65.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~~~~~iid 67 (82)
+|.|+|||||||+++.|++.+++.+++.++++++.... .+..++++....++.+.+....+.+||+|
T Consensus 11 ~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vid 90 (227)
T 1zd8_A 11 VIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLD 90 (227)
T ss_dssp EEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccCCCEEEe
Confidence 47999999999999999999999999999999886522 15567777777777777764335679999
Q ss_pred CCCCCHHHHHHHHh
Q 035937 68 GFPRSEENRAAFER 81 (82)
Q Consensus 68 g~p~~~~~~~~~~~ 81 (82)
|+|++..|++.+.+
T Consensus 91 ~~~~~~~~~~~l~~ 104 (227)
T 1zd8_A 91 GFPRTLPQAEALDR 104 (227)
T ss_dssp SCCCSHHHHHHHHT
T ss_pred CCCCCHHHHHHHHH
Confidence 99999988877654
No 15
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.74 E-value=2.8e-17 Score=96.96 Aligned_cols=80 Identities=48% Similarity=0.929 Sum_probs=64.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcC--CCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESS--DNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~--~~~~~i 65 (82)
+|+|+|||||||+|+.|++.+++.+++.+++++..... .+..++.+....++.+.+... .+.++|
T Consensus 13 ~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi 92 (196)
T 2c95_A 13 FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTSKGFL 92 (196)
T ss_dssp EEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTCSCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccCCcEE
Confidence 47999999999999999999999999999999875321 255677777777777777643 267899
Q ss_pred EeCCCCCHHHHHHHH
Q 035937 66 INGFPRSEENRAAFE 80 (82)
Q Consensus 66 idg~p~~~~~~~~~~ 80 (82)
+||+|++..+++.+.
T Consensus 93 ~d~~~~~~~~~~~~~ 107 (196)
T 2c95_A 93 IDGYPREVQQGEEFE 107 (196)
T ss_dssp EESCCCSHHHHHHHH
T ss_pred EeCCCCCHHHHHHHH
Confidence 999999988877654
No 16
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.74 E-value=5.1e-17 Score=95.43 Aligned_cols=79 Identities=56% Similarity=1.022 Sum_probs=65.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~~~~~iid 67 (82)
+|+|+|||||||+|+.|++.+++.+++.++++++.... .+...+.+....++.+.+....+..+|+|
T Consensus 10 ~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~vi~d 89 (194)
T 1qf9_A 10 FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQGKNFLVD 89 (194)
T ss_dssp EEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTSTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhcCCCCEEEe
Confidence 47999999999999999999999999999998887532 14556677777788887766556789999
Q ss_pred CCCCCHHHHHHH
Q 035937 68 GFPRSEENRAAF 79 (82)
Q Consensus 68 g~p~~~~~~~~~ 79 (82)
|+|++..+++.+
T Consensus 90 ~~~~~~~~~~~~ 101 (194)
T 1qf9_A 90 GFPRNEENNNSW 101 (194)
T ss_dssp TCCCSHHHHHHH
T ss_pred CcCCCHHHHHHH
Confidence 999998887766
No 17
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=96.68 Aligned_cols=80 Identities=48% Similarity=0.941 Sum_probs=65.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcC--CCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESS--DNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~--~~~~~i 65 (82)
+|+|+|||||||+|+.|++++++.+++.+++++..... .+...+.+....++.+.+... .+.+||
T Consensus 16 ~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~vi 95 (199)
T 2bwj_A 16 FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDTRGFL 95 (199)
T ss_dssp EEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSCSCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccCccEE
Confidence 47999999999999999999999999999998876521 256677777777777776554 267899
Q ss_pred EeCCCCCHHHHHHHH
Q 035937 66 INGFPRSEENRAAFE 80 (82)
Q Consensus 66 idg~p~~~~~~~~~~ 80 (82)
+||+|.+..+++.+.
T Consensus 96 ~dg~~~~~~~~~~l~ 110 (199)
T 2bwj_A 96 IDGYPREVKQGEEFG 110 (199)
T ss_dssp EETCCSSHHHHHHHH
T ss_pred EeCCCCCHHHHHHHH
Confidence 999999988877654
No 18
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.71 E-value=1.5e-16 Score=93.52 Aligned_cols=79 Identities=53% Similarity=1.017 Sum_probs=60.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh--------------CCCcCCHHHHHHHHHHHHhc----CC-C
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS--------------NRKIVPSEVTISLIRKEIES----SD-N 61 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~i~~----~~-~ 61 (82)
+|+|+|||||||+|+.|++.+++++++.++++++.... .+...+.+....++...+.. .. +
T Consensus 7 ~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 86 (196)
T 1tev_A 7 FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQK 86 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhccccCC
Confidence 47999999999999999999999999999999876532 24556666655555544432 22 6
Q ss_pred CeEEEeCCCCCHHHHHHH
Q 035937 62 HKFLINGFPRSEENRAAF 79 (82)
Q Consensus 62 ~~~iidg~p~~~~~~~~~ 79 (82)
..||+||+|.+..+.+.+
T Consensus 87 ~~vi~dg~~~~~~~~~~~ 104 (196)
T 1tev_A 87 NKFLIDGFPRNQDNLQGW 104 (196)
T ss_dssp CEEEEESCCCSHHHHHHH
T ss_pred CeEEEeCCCCCHHHHHHH
Confidence 789999999998876644
No 19
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.71 E-value=1.3e-16 Score=94.98 Aligned_cols=80 Identities=53% Similarity=0.988 Sum_probs=62.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh--------------CCCcCCHHHHHHHHHHHHhcC--C-CCe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS--------------NRKIVPSEVTISLIRKEIESS--D-NHK 63 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~~i~~~--~-~~~ 63 (82)
+|+|+|||||||+++.|++.+++.+++.++++++.... .+...+.+....++.+.+... . ..+
T Consensus 19 ~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~l~~g~~~ 98 (203)
T 1ukz_A 19 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDNVKANKHK 98 (203)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred EEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhhccCCCe
Confidence 47899999999999999999999999999998876421 245566666666666666432 1 368
Q ss_pred EEEeCCCCCHHHHHHHH
Q 035937 64 FLINGFPRSEENRAAFE 80 (82)
Q Consensus 64 ~iidg~p~~~~~~~~~~ 80 (82)
||+||+|++..++..|+
T Consensus 99 ~i~dg~~~~~~~~~~~~ 115 (203)
T 1ukz_A 99 FLIDGFPRKMDQAISFE 115 (203)
T ss_dssp EEEETCCCSHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 99999999998887665
No 20
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.69 E-value=1.7e-16 Score=93.16 Aligned_cols=76 Identities=36% Similarity=0.802 Sum_probs=60.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~~~~~iid 67 (82)
+|+|+|||||||+++.|++++++.+++.++++++.... .+...+.+...+.+.+.+. .++|+|
T Consensus 8 ~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----~~~i~d 83 (186)
T 3cm0_A 8 IFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----ERVIFD 83 (186)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC----SEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc----CCEEEe
Confidence 47999999999999999999999999999999876321 2556677776666666653 359999
Q ss_pred CCCCCHHHHHHHH
Q 035937 68 GFPRSEENRAAFE 80 (82)
Q Consensus 68 g~p~~~~~~~~~~ 80 (82)
|+|++..+++.++
T Consensus 84 g~~~~~~~~~~l~ 96 (186)
T 3cm0_A 84 GFPRTLAQAEALD 96 (186)
T ss_dssp SCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999988776543
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.64 E-value=1.3e-15 Score=87.86 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=59.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhCC--------------CcCCHHHHHHHHHHHHhcCCCCeEEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNR--------------KIVPSEVTISLIRKEIESSDNHKFLI 66 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~i~~~~~~~~ii 66 (82)
+|+|+|||||||+|+.| +++|+.++++++++++.....+ ...+.+...+++.+.+....+..+|+
T Consensus 5 ~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~ 83 (179)
T 3lw7_A 5 LITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVVF 83 (179)
T ss_dssp EEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSCEEE
T ss_pred EEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 47999999999999999 9999999999999998765421 00123334455556664434778999
Q ss_pred eCCCCCHHHHHHHHh
Q 035937 67 NGFPRSEENRAAFER 81 (82)
Q Consensus 67 dg~p~~~~~~~~~~~ 81 (82)
||+ .+..+++.+++
T Consensus 84 dg~-~~~~~~~~l~~ 97 (179)
T 3lw7_A 84 DGV-RSLAEVEEFKR 97 (179)
T ss_dssp ECC-CCHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHH
Confidence 999 99888887764
No 22
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.59 E-value=3.1e-14 Score=87.07 Aligned_cols=80 Identities=41% Similarity=0.815 Sum_probs=60.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh-------------CCCcCCHHHHHHHHHHHHhcCCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS-------------NRKIVPSEVTISLIRKEIESSDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~i~~~~~~~~iid 67 (82)
+|+|+|||||||+++.|++++|+.+++.+++++..... .+...+...+.+.+...+....+.+|++|
T Consensus 31 ~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~il~ 110 (246)
T 2bbw_A 31 VILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLD 110 (246)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 47999999999999999999999999999988764211 24456666666666666654345679999
Q ss_pred CCCCCHHHHHHHH
Q 035937 68 GFPRSEENRAAFE 80 (82)
Q Consensus 68 g~p~~~~~~~~~~ 80 (82)
|+|++..+++.+.
T Consensus 111 g~~~~~~~~~~l~ 123 (246)
T 2bbw_A 111 GFPRTLGQAEALD 123 (246)
T ss_dssp SCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999877766654
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.52 E-value=2.6e-14 Score=83.06 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=53.8
Q ss_pred CeecCCCCCHHHHHHHHHH-HhCCceeehHHHHHHHHhhC--C--CcCCHH-------HHHHHHHHHHhc-CCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVK-NFGLTHLSAGDLLRREIASN--R--KIVPSE-------VTISLIRKEIES-SDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~-~~~~~~i~~~~~~~~~~~~~--~--~~~~~~-------~~~~~l~~~i~~-~~~~~~iid 67 (82)
+|.|+|||||||+|+.|++ .+++.+++. |.+++..... + .....+ ...+.+.+.+.. ..+.++|+|
T Consensus 6 ~i~G~~GsGKST~a~~L~~~~~~~~~i~~-d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d 84 (181)
T 1ly1_A 6 LTIGCPGSGKSTWAREFIAKNPGFYNINR-DDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIIS 84 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHHSTTEEEECH-HHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEEEEC
T ss_pred EEecCCCCCHHHHHHHHHhhcCCcEEecH-HHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeEEEe
Confidence 4799999999999999998 689999998 5555544321 1 122221 223344555532 227789999
Q ss_pred CCCCCHHHHHHHH
Q 035937 68 GFPRSEENRAAFE 80 (82)
Q Consensus 68 g~p~~~~~~~~~~ 80 (82)
+++.+..+++.+.
T Consensus 85 ~~~~~~~~~~~l~ 97 (181)
T 1ly1_A 85 DTNLNPERRLAWE 97 (181)
T ss_dssp SCCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999887776654
No 24
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.45 E-value=3.5e-13 Score=80.09 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=54.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHh---hCCCcCCHHHH---HHHHHHHHhcCCCCeEEEeCCCCCHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIA---SNRKIVPSEVT---ISLIRKEIESSDNHKFLINGFPRSEE 74 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~---~~~l~~~i~~~~~~~~iidg~p~~~~ 74 (82)
+|+|+|||||||+++.|++.+++.+++.+++...... ..+....+... ...+.+.+ ..+..+|+|+.+....
T Consensus 22 ~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~--~~~~~vivd~~~~~~~ 99 (202)
T 3t61_A 22 VVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERL--ASREPVVVSCSALKRS 99 (202)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHH--TSSSCCEEECCCCSHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHH--hcCCCEEEECCCCCHH
Confidence 4899999999999999999999999999887533211 11333443322 22333333 2266799998878877
Q ss_pred HHHHHHh
Q 035937 75 NRAAFER 81 (82)
Q Consensus 75 ~~~~~~~ 81 (82)
+.+.+.+
T Consensus 100 ~~~~l~~ 106 (202)
T 3t61_A 100 YRDKLRE 106 (202)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 25
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.44 E-value=4.1e-13 Score=78.62 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=47.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHhhCCC--------cCCH---HHHHHHHHHHHhcC-CCCe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLLRREIASNRK--------IVPS---EVTISLIRKEIESS-DNHK 63 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~~~~~~~~~~--------~~~~---~~~~~~l~~~i~~~-~~~~ 63 (82)
+|+|+|||||||+++.|+++++ +.+++.++++++.....+. ..+. ..+...+.+.+... .+..
T Consensus 7 ~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 86 (192)
T 1kht_A 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKESP 86 (192)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhccCCe
Confidence 4799999999999999999998 9999999999887543321 1111 11222232333322 3567
Q ss_pred EEEeCCCC
Q 035937 64 FLINGFPR 71 (82)
Q Consensus 64 ~iidg~p~ 71 (82)
+|+||.+.
T Consensus 87 viid~~~~ 94 (192)
T 1kht_A 87 VAVDTHST 94 (192)
T ss_dssp EEEECCSE
T ss_pred EEEcccee
Confidence 99999753
No 26
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.41 E-value=1.2e-12 Score=81.75 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=52.5
Q ss_pred CeecCCCCCHHHHHHHHHHHh-CCceeehHHHHHHHHhhC--CC--cCCH---H----HHHHHHHHHHhc-CCCCeEEEe
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-GLTHLSAGDLLRREIASN--RK--IVPS---E----VTISLIRKEIES-SDNHKFLIN 67 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-~~~~i~~~~~~~~~~~~~--~~--~~~~---~----~~~~~l~~~i~~-~~~~~~iid 67 (82)
+|+|+|||||||+++.|++++ ++.+++.+ .+++..... +. .... . .+.+.+...+.. ..+.++|+|
T Consensus 6 ~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~vi~d 84 (301)
T 1ltq_A 6 LTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIIS 84 (301)
T ss_dssp EEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCEEEEe
Confidence 489999999999999999985 89999997 555554321 11 1221 1 122333444422 226789999
Q ss_pred CCCCCHHHHHHHH
Q 035937 68 GFPRSEENRAAFE 80 (82)
Q Consensus 68 g~p~~~~~~~~~~ 80 (82)
|.+.+..+++.+.
T Consensus 85 ~~~~~~~~~~~l~ 97 (301)
T 1ltq_A 85 DTNLNPERRLAWE 97 (301)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9998877776654
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.38 E-value=1.2e-12 Score=76.68 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=32.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+++.|+++++ +.+++.++++++..
T Consensus 5 ~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 4899999999999999999988 88999999998766
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=1.1e-12 Score=78.06 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=32.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+++.|++.+++.+++.++++....
T Consensus 29 ~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~ 64 (199)
T 3vaa_A 29 FLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF 64 (199)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh
Confidence 489999999999999999999999999999887653
No 29
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.34 E-value=5.1e-12 Score=74.14 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=30.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
+|+|+|||||||+++.|++.+++.+++.+++....
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~ 43 (193)
T 2rhm_A 9 IVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVM 43 (193)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHH
Confidence 47999999999999999999999999996665443
No 30
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.30 E-value=9.4e-12 Score=72.79 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=33.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+++.|++++++.+++.++++.+..
T Consensus 9 ~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~ 44 (185)
T 3trf_A 9 YLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT 44 (185)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence 479999999999999999999999999999887753
No 31
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.30 E-value=9.9e-12 Score=71.63 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=32.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+|+.|++.+++++++.+++.++..
T Consensus 4 ~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~ 39 (168)
T 2pt5_A 4 YLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE 39 (168)
T ss_dssp EEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc
Confidence 489999999999999999999999999999887754
No 32
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.26 E-value=2.8e-12 Score=78.87 Aligned_cols=76 Identities=24% Similarity=0.272 Sum_probs=45.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhC--CceeehHHHHHHHH------hhC-CCcCCH-------HHHHHHHHHHHhcCCCCeE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG--LTHLSAGDLLRREI------ASN-RKIVPS-------EVTISLIRKEIESSDNHKF 64 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~--~~~i~~~~~~~~~~------~~~-~~~~~~-------~~~~~~l~~~i~~~~~~~~ 64 (82)
+|+|+|||||||+++.|++.++ +.+++. |.++... ... +...++ .....++...+.. +.+|
T Consensus 36 ~l~G~~GsGKSTla~~L~~~l~~~~~~~~~-D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--g~~v 112 (253)
T 2p5t_B 36 LLGGQSGAGKTTIHRIKQKEFQGNIVIIDG-DSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL--GYNL 112 (253)
T ss_dssp EEESCGGGTTHHHHHHHHHHTTTCCEEECG-GGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHT--TCCE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCcEEEec-HHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhc--CCCE
Confidence 4799999999999999999987 556666 4444321 111 221111 1112222222221 4579
Q ss_pred EEeCCCCCHHHHHHH
Q 035937 65 LINGFPRSEENRAAF 79 (82)
Q Consensus 65 iidg~p~~~~~~~~~ 79 (82)
|+||++++..+...+
T Consensus 113 Vid~~~~~~~~~~~~ 127 (253)
T 2p5t_B 113 LIEGTLRTVDVPKKT 127 (253)
T ss_dssp EEECCTTSSHHHHHH
T ss_pred EEeCCCCCHHHHHHH
Confidence 999998876665443
No 33
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.25 E-value=2.3e-11 Score=71.03 Aligned_cols=66 Identities=23% Similarity=0.420 Sum_probs=47.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhC-------CCcCCHHHHHHHHHHHHhcCCCCeEEEeCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASN-------RKIVPSEVTISLIRKEIESSDNHKFLINGF 69 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~i~~~~~~~~iidg~ 69 (82)
+|+|+|||||||+++.|++.+++.+++.++++++..... ......+.+.+.+...+.. .++|+|+.
T Consensus 15 ~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~vv~~~ 87 (180)
T 3iij_A 15 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMRE---GGVIVDYH 87 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHH---CCEEEECS
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhc---CCEEEEec
Confidence 489999999999999999999999999999988762110 1123444455555555543 35677653
No 34
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.25 E-value=2e-11 Score=79.90 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=50.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIASNRKIVPSEVTISLIRKEIESSDNHKFLINGFPRSEENRAAFE 80 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~iidg~p~~~~~~~~~~ 80 (82)
+|+|+|||||||+|+.|++.+++.+++.+++ + .-..+.+.+...+.. +..+|+|+.+.+..++..+.
T Consensus 262 il~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~----------~~~~~~~~~~~~l~~--g~~vIiD~~~~~~~~r~~~~ 328 (416)
T 3zvl_A 262 VAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL-G----------SWQRCVSSCQAALRQ--GKRVVIDNTNPDVPSRARYI 328 (416)
T ss_dssp EEESCTTSSHHHHHHHHTGGGTCEECCGGGS-C----------SHHHHHHHHHHHHHT--TCCEEEESCCCSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCcEEEccchH-H----------HHHHHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH
Confidence 4799999999999999999999999999775 1 122233444444443 56799999988877776654
No 35
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.24 E-value=8.4e-12 Score=73.02 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=33.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+|+.|++++|+++++.++++++..
T Consensus 6 ~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~ 41 (184)
T 2iyv_A 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT 41 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence 489999999999999999999999999999888754
No 36
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.24 E-value=1.9e-11 Score=76.62 Aligned_cols=76 Identities=20% Similarity=0.323 Sum_probs=47.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh--CCceeehHHHHHHHH-------hhCCCcC-------CHHHHHHHHHHHHhcCCCCeE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF--GLTHLSAGDLLRREI-------ASNRKIV-------PSEVTISLIRKEIESSDNHKF 64 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~--~~~~i~~~~~~~~~~-------~~~~~~~-------~~~~~~~~l~~~i~~~~~~~~ 64 (82)
+|+|||||||||+++.|++.+ ++.++|.|++ +... ..-+... ........+.+.+.. +..+
T Consensus 37 vl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~--g~~v 113 (287)
T 1gvn_B 37 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ--GYNL 113 (287)
T ss_dssp EEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH--TCCE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc--CCeE
Confidence 589999999999999999998 7888997544 3211 0001111 111122333344433 5679
Q ss_pred EEeCCCCCHHHHHHH
Q 035937 65 LINGFPRSEENRAAF 79 (82)
Q Consensus 65 iidg~p~~~~~~~~~ 79 (82)
|+|+.+....+...+
T Consensus 114 Ild~~~~~~~~~~~~ 128 (287)
T 1gvn_B 114 VIEGTGRTTDVPIQT 128 (287)
T ss_dssp EECCCCCCSHHHHHH
T ss_pred EEECCCCCHHHHHHH
Confidence 999988886655443
No 37
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.23 E-value=9.9e-12 Score=71.85 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=33.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+++.|++++++++++.++++++..
T Consensus 11 ~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~ 46 (168)
T 1zuh_A 11 VLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV 46 (168)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence 489999999999999999999999999999988764
No 38
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.22 E-value=1.2e-11 Score=72.03 Aligned_cols=35 Identities=29% Similarity=0.439 Sum_probs=32.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
+|+|+|||||||+++.|++++++++++.++++++.
T Consensus 8 ~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~ 42 (175)
T 1via_A 8 VFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK 42 (175)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH
Confidence 47999999999999999999999999999988765
No 39
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.21 E-value=2.2e-11 Score=75.16 Aligned_cols=75 Identities=21% Similarity=0.258 Sum_probs=46.5
Q ss_pred CeecCCCCCHHHHHHHHHHH---hCCcee--ehHHHHHHHHhhCCCcCCHHH----HHHHHHHHHhcCCCCeEEEeCCCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKN---FGLTHL--SAGDLLRREIASNRKIVPSEV----TISLIRKEIESSDNHKFLINGFPR 71 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~---~~~~~i--~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~i~~~~~~~~iidg~p~ 71 (82)
+|+|+|||||||+|+.|++. +|+.++ +.+++ ++.... -....... ....+...+. ...+|+|+.+.
T Consensus 8 vl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~-~~~l~~-~~~~~e~~~~~~~~~~i~~~l~---~~~vIiD~~~~ 82 (260)
T 3a4m_A 8 ILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI-RESFPV-WKEKYEEFIKKSTYRLIDSALK---NYWVIVDDTNY 82 (260)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH-HTTSSS-CCGGGHHHHHHHHHHHHHHHHT---TSEEEECSCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH-HHHHhh-hhHHHHHHHHHHHHHHHHHHhh---CCEEEEeCCcc
Confidence 48999999999999999987 787777 76544 432211 00001111 1223333332 27899999877
Q ss_pred CHHHHHHHH
Q 035937 72 SEENRAAFE 80 (82)
Q Consensus 72 ~~~~~~~~~ 80 (82)
...+.+.+.
T Consensus 83 ~~~~~~~l~ 91 (260)
T 3a4m_A 83 YNSMRRDLI 91 (260)
T ss_dssp SHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 776666554
No 40
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=99.21 E-value=1.2e-10 Score=70.06 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=54.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhC---CceeehHHHHHHH-HhhCCCcCCHH------------HHH---HHHH--------
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG---LTHLSAGDLLRRE-IASNRKIVPSE------------VTI---SLIR-------- 53 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~---~~~i~~~~~~~~~-~~~~~~~~~~~------------~~~---~~l~-------- 53 (82)
+|+|.|||||+|+|+.+.+.++ +..++++|.++++ ....+-..+.. .+. +-++
T Consensus 15 ~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~~~~~ 94 (202)
T 3ch4_B 15 LFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFC 94 (202)
T ss_dssp EEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCTTTTH
T ss_pred EEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCchHHH
Confidence 4799999999999999988784 7889999999964 33322222221 111 1111
Q ss_pred -HHHhcCCCCeEEEeCCCCCHHHHHHHHh
Q 035937 54 -KEIESSDNHKFLINGFPRSEENRAAFER 81 (82)
Q Consensus 54 -~~i~~~~~~~~iidg~p~~~~~~~~~~~ 81 (82)
..+...+...|||||. |...++++|++
T Consensus 95 ~~~~~~~~~~~vII~dv-R~~~Ev~~fr~ 122 (202)
T 3ch4_B 95 RKIVEGISQPIWLVSDT-RRVSDIQWFRE 122 (202)
T ss_dssp HHHSBTCCCSEEEECCC-CSHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEeCC-CCHHHHHHHHH
Confidence 1122223568999999 99999999975
No 41
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.18 E-value=1.7e-11 Score=72.04 Aligned_cols=67 Identities=19% Similarity=0.414 Sum_probs=46.4
Q ss_pred CeecCCCCCHHHHHHHHHHH-hCCceeehHHHHHHHHhh-C-----CC-cC---CHHHHHHHHHHHHhcCCCCeEEEeCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKN-FGLTHLSAGDLLRREIAS-N-----RK-IV---PSEVTISLIRKEIESSDNHKFLINGF 69 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~-~~~~~i~~~~~~~~~~~~-~-----~~-~~---~~~~~~~~l~~~i~~~~~~~~iidg~ 69 (82)
+|+|+|||||||+++.|++. +|++++++++++++.... . +. .+ +++.+.+.+...+.. ..++|+|+.
T Consensus 14 ~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~--~g~~vi~~~ 91 (184)
T 1y63_A 14 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVS--RGNHVVDYH 91 (184)
T ss_dssp EEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTS--SSEEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhc--cCCEEEeCc
Confidence 48999999999999999999 899999999999874211 0 11 22 233444445555433 357888864
No 42
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.18 E-value=2.5e-11 Score=70.12 Aligned_cols=35 Identities=14% Similarity=0.383 Sum_probs=32.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
+|+|+|||||||+|+.|++.+++++++.++++++.
T Consensus 6 ~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~ 40 (173)
T 1e6c_A 6 FMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT 40 (173)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence 48999999999999999999999999999988765
No 43
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.17 E-value=4.1e-11 Score=71.46 Aligned_cols=36 Identities=19% Similarity=0.451 Sum_probs=33.6
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIA 37 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~ 37 (82)
|+|++||||||+++.|++.+|+++++.|+++++...
T Consensus 17 ltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE 52 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH
Confidence 799999999999999999999999999999888754
No 44
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.16 E-value=9.4e-11 Score=72.46 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=33.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+++.|++.+++.+++.+++++...
T Consensus 52 ~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~ 87 (250)
T 3nwj_A 52 YLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM 87 (250)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence 489999999999999999999999999999988765
No 45
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.14 E-value=5.4e-11 Score=71.42 Aligned_cols=35 Identities=29% Similarity=0.575 Sum_probs=32.7
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
|+|+|||||||+++.|++.+++++++.|+++++..
T Consensus 10 i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~ 44 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA 44 (227)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence 79999999999999999999999999999998653
No 46
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.13 E-value=5.4e-11 Score=68.80 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=32.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
+|+|+|||||||+++.|+..+++.+++.++++++.
T Consensus 8 ~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~ 42 (173)
T 1kag_A 8 FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKR 42 (173)
T ss_dssp EEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHH
Confidence 47999999999999999999999999998887764
No 47
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.13 E-value=3.4e-10 Score=65.63 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=29.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~ 32 (82)
+|+|+|||||||+++.|+..+|..+++.+++.
T Consensus 12 ~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~ 43 (175)
T 1knq_A 12 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH 43 (175)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred EEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence 47999999999999999999999999998874
No 48
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.12 E-value=1.9e-10 Score=68.30 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=48.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH---hhCCCcCCHHHH---HHHHHHHHhcC--CCCeEEEeCCCCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI---ASNRKIVPSEVT---ISLIRKEIESS--DNHKFLINGFPRS 72 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~---~~~l~~~i~~~--~~~~~iidg~p~~ 72 (82)
+|+|+|||||||+++.|+..+|..+++.+++..... ...+....+... ...+.+.+... .+..+|+|.....
T Consensus 33 ~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~viid~~~~~ 112 (200)
T 4eun_A 33 VVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALK 112 (200)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred EEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCEEEEchhhh
Confidence 379999999999999999999999999987743211 111222222211 11222222211 1456888865566
Q ss_pred HHHHHHHHh
Q 035937 73 EENRAAFER 81 (82)
Q Consensus 73 ~~~~~~~~~ 81 (82)
....+.+++
T Consensus 113 ~~~~~~l~~ 121 (200)
T 4eun_A 113 RTYRDVLRE 121 (200)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 666666653
No 49
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.12 E-value=3.6e-11 Score=69.25 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=30.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~ 34 (82)
+|+|+|||||||+++.|++++++.+++.+++...
T Consensus 5 ~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 5 ILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp EEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 4799999999999999999999999999776654
No 50
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.09 E-value=5.2e-10 Score=65.06 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=40.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee-eh---HHHHHHHHhhCCCc---CCH--HHHHHHHHHHHhcCCCCeEEEeCCCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL-SA---GDLLRREIASNRKI---VPS--EVTISLIRKEIESSDNHKFLINGFPR 71 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i-~~---~~~~~~~~~~~~~~---~~~--~~~~~~l~~~i~~~~~~~~iidg~p~ 71 (82)
+|+|+|||||||+|+.|++.+++.++ +. ++.+++....+... ... +.+.+.+.+.+.. .+..+|+|+...
T Consensus 9 ~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~-~g~~vi~d~~~~ 87 (183)
T 2vli_A 9 WINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASRE-AAGPLIVPVSIS 87 (183)
T ss_dssp EEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHH-CSSCEEEEECCC
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHh-CCCcEEEeeecc
Confidence 47999999999999999999999888 42 33444433211111 011 2234455555533 145578887655
Q ss_pred CHH
Q 035937 72 SEE 74 (82)
Q Consensus 72 ~~~ 74 (82)
...
T Consensus 88 ~~~ 90 (183)
T 2vli_A 88 DTA 90 (183)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 51
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.09 E-value=7.7e-10 Score=64.67 Aligned_cols=29 Identities=31% Similarity=0.322 Sum_probs=26.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh---CCceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---GLTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~~~~i~~~ 29 (82)
+|+|+|||||||+++.|++.+ |+.+++++
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 4 AFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 479999999999999999988 89998863
No 52
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.04 E-value=2.9e-10 Score=67.27 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=32.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
.|+|++||||||+++.|++.+++++++.+++.+...
T Consensus 6 ~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~ 41 (208)
T 3ake_A 6 TIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA 41 (208)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence 379999999999999999999999999999988753
No 53
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.03 E-value=7.1e-10 Score=67.98 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=33.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
.|.|||||||||+++.|++.+++.+++.+++++...
T Consensus 13 ~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 13 AVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 378999999999999999999999999999998864
No 54
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.03 E-value=2.3e-10 Score=68.00 Aligned_cols=33 Identities=33% Similarity=0.495 Sum_probs=30.3
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
|+|+|||||||+++.|++ +|+++++.+++.++.
T Consensus 7 l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~ 39 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD-LGVPLVDADVVAREV 39 (206)
T ss_dssp EECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHH-CCCcccchHHHHHHH
Confidence 799999999999999987 999999999988764
No 55
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.01 E-value=3.4e-10 Score=65.68 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=27.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee--ehHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL--SAGDLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i--~~~~~~~~ 34 (82)
+|+|+|||||||+++.|+++++..++ +.++++..
T Consensus 7 ~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 48999999999999999999886655 57655543
No 56
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.00 E-value=9.8e-10 Score=65.00 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=29.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCc--eee----hHHHHHHHHhh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLT--HLS----AGDLLRREIAS 38 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~--~i~----~~~~~~~~~~~ 38 (82)
+|.|+|||||||+++.|++.++.. ++. .++.+++....
T Consensus 8 ~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~ 51 (213)
T 2plr_A 8 AFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKE 51 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhc
Confidence 479999999999999999998863 443 45566665543
No 57
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.00 E-value=4.6e-10 Score=66.17 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=31.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
.|+|++||||||+++.|++. |+.+++.++++++..
T Consensus 12 ~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~ 46 (203)
T 1uf9_A 12 GITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR 46 (203)
T ss_dssp EEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence 37999999999999999998 999999999887654
No 58
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.00 E-value=3.3e-10 Score=67.10 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=31.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
.|+|+|||||||+++.|++ +|+.+++.++++++..
T Consensus 5 ~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~ 39 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFY 39 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGG
T ss_pred EEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHh
Confidence 3799999999999999999 9999999999887643
No 59
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.99 E-value=9.9e-10 Score=73.75 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=49.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC-----ceeehHHHHHHHHhhC--CC---cCCHH---HHHHH----HHH---HHhcCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL-----THLSAGDLLRREIASN--RK---IVPSE---VTISL----IRK---EIESSD 60 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~-----~~i~~~~~~~~~~~~~--~~---~~~~~---~~~~~----l~~---~i~~~~ 60 (82)
+++|.|||||||+|+.|++.+++ .+++.|++.++..... .. ...++ ..... +.+ .+....
T Consensus 39 vlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L~~~~ 118 (520)
T 2axn_A 39 VMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYLAKEG 118 (520)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999998853 3478888665543221 01 11111 11122 222 121123
Q ss_pred CCeEEEeCCCCCHHHHHHHH
Q 035937 61 NHKFLINGFPRSEENRAAFE 80 (82)
Q Consensus 61 ~~~~iidg~p~~~~~~~~~~ 80 (82)
+..+|+|+...+..+++.+.
T Consensus 119 g~~VIvDat~~~~~~R~~~~ 138 (520)
T 2axn_A 119 GQIAVFDATNTTRERRHMIL 138 (520)
T ss_dssp CCEEEEESCCCSHHHHHHHH
T ss_pred CceEEecCCCCCHHHHHHHH
Confidence 67899999988887776654
No 60
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.99 E-value=5.8e-10 Score=68.56 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=32.5
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
|+||+||||||+++.|++++|+.+++.+.+++...
T Consensus 32 I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 78999999999999999999999999999997643
No 61
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.98 E-value=6.6e-10 Score=65.94 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=23.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+|+|||||||+++.|++.++..+++.
T Consensus 14 ~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 14 VFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4899999999999999999887655444
No 62
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.96 E-value=2.5e-09 Score=63.11 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=24.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh-CCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-GLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-~~~~i~~ 28 (82)
+|+|+|||||||+++.|++.+ |+.+++.
T Consensus 8 ~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 8 VFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp EEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 479999999999999999998 5766654
No 63
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.94 E-value=3.5e-10 Score=69.65 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=29.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~ 32 (82)
+|+|||||||||+|+.|++.+++.+++.|++.
T Consensus 5 ~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred EEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 47999999999999999999999999998764
No 64
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.94 E-value=8.5e-10 Score=65.98 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=32.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
.|+|++||||||+++.|++.+|+.+++.++++++.
T Consensus 7 ~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 7 ALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 37999999999999999999999999999998864
No 65
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.93 E-value=1.4e-09 Score=66.07 Aligned_cols=34 Identities=38% Similarity=0.634 Sum_probs=32.2
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRRE 35 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~ 35 (82)
|+|++||||||+++.|++++|+.+++.+++++..
T Consensus 21 i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 21 IDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 7899999999999999999999999999999864
No 66
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.93 E-value=1.1e-09 Score=65.59 Aligned_cols=35 Identities=31% Similarity=0.558 Sum_probs=31.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
.|+|++||||||+++.|++ +|+++++.++++++..
T Consensus 8 ~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~ 42 (218)
T 1vht_A 8 ALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVV 42 (218)
T ss_dssp EEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHh
Confidence 3799999999999999988 9999999988877643
No 67
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.91 E-value=1.3e-09 Score=67.99 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=31.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
.|+|+|||||||+|+.|+ .+|+.+++.+++.++..
T Consensus 79 ~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~ 113 (281)
T 2f6r_A 79 GLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY 113 (281)
T ss_dssp EEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh
Confidence 379999999999999999 68999999999877654
No 68
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.89 E-value=6.8e-10 Score=68.05 Aligned_cols=32 Identities=44% Similarity=0.729 Sum_probs=29.8
Q ss_pred eecCCCCCHHHHHHHHHHHhCCc----------eeehHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLT----------HLSAGDLLR 33 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~----------~i~~~~~~~ 33 (82)
|+|+|||||||+|+.|++.+++. +++.+++++
T Consensus 27 I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 79999999999999999999987 799999886
No 69
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.88 E-value=2.4e-09 Score=64.81 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=32.8
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS 38 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~ 38 (82)
|+|.+||||||+++.|++ +|+++++.|.+.++....
T Consensus 14 lTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~ 49 (210)
T 4i1u_A 14 LTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAP 49 (210)
T ss_dssp EECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTST
T ss_pred EECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcC
Confidence 799999999999999987 999999999998887654
No 70
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.86 E-value=1.1e-08 Score=62.15 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=28.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhC--Cceeeh--------HHHHHHHHhh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG--LTHLSA--------GDLLRREIAS 38 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~--~~~i~~--------~~~~~~~~~~ 38 (82)
+|.|+|||||||+++.|++.++ +.++.. +..+++.+..
T Consensus 30 ~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~ 77 (229)
T 4eaq_A 30 TFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLE 77 (229)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhC
Confidence 3789999999999999999886 455433 4455555443
No 71
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.82 E-value=2.1e-08 Score=59.45 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=25.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh---CCc--eeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---GLT--HLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~~~--~i~~~~~ 31 (82)
+|+|+|||||||+++.|+..+ |.. +++.+++
T Consensus 29 ~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 29 WVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 478999999999999999888 555 7777555
No 72
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.81 E-value=4.9e-09 Score=62.70 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=31.1
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREI 36 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~ 36 (82)
|.|++||||||+++.||+++|+++++ +++++...
T Consensus 11 i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a 44 (201)
T 3fdi_A 11 IGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVA 44 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHH
Confidence 78999999999999999999999999 88887643
No 73
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.80 E-value=9.1e-09 Score=64.47 Aligned_cols=33 Identities=36% Similarity=0.696 Sum_probs=26.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC--ceeehHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL--THLSAGDLLR 33 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~--~~i~~~~~~~ 33 (82)
+|+||||+|||++|+.+|+.++. ..++.+++..
T Consensus 40 Ll~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 40 GIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES 74 (293)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence 47899999999999999999884 4566666643
No 74
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.75 E-value=5.8e-08 Score=56.74 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=25.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~~~~ 35 (82)
+|+|+|||||||+++.|++.++ +.+++. |.++..
T Consensus 17 ~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~-d~~~~~ 55 (186)
T 2yvu_A 17 WLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG-DWARTT 55 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH-HHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH-HHHHHH
Confidence 4789999999999999998774 345565 444543
No 75
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.74 E-value=3.2e-09 Score=63.08 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=30.1
Q ss_pred eecCCCCCHHHHHHHHHHHh-CCceeehHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNF-GLTHLSAGDLLRR 34 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~-~~~~i~~~~~~~~ 34 (82)
|+|+|||||||+++.|++.+ ++.+++.++++..
T Consensus 26 i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP 59 (207)
T ss_dssp EEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred EECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence 79999999999999999988 8999999988754
No 76
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.73 E-value=6.8e-09 Score=60.84 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh---CCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---GLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~~~~i~~ 28 (82)
+|+|++||||||+++.|++.+ |+.++..
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 479999999999999999998 9888754
No 77
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.73 E-value=1.5e-08 Score=61.67 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=32.2
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHhh
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIAS 38 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~~ 38 (82)
|.|++||||||+++.||+++|+++++ ++++++....
T Consensus 19 i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~~ 54 (223)
T 3hdt_A 19 IEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASEK 54 (223)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHHH
Confidence 78999999999999999999999999 6888776543
No 78
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.71 E-value=8e-09 Score=60.73 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|.|+|||||||+++.|++.++..++.
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 479999999999999999999987664
No 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.71 E-value=6.9e-09 Score=60.69 Aligned_cols=33 Identities=39% Similarity=0.635 Sum_probs=26.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCc--eeehHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLT--HLSAGDLLR 33 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~--~i~~~~~~~ 33 (82)
+|+|+|||||||+++.|+..++.. +++.+++..
T Consensus 13 ~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 13 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp EEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred EEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 479999999999999999876544 777766643
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.70 E-value=7.5e-08 Score=55.99 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=27.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh----C--CceeehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF----G--LTHLSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~----~--~~~i~~~~~~~~~ 35 (82)
+|+||||+||||+++.++..+ | +.+++..+++...
T Consensus 42 ~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 82 (180)
T 3ec2_A 42 TFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL 82 (180)
T ss_dssp EECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 478999999999999998654 3 5678887777654
No 81
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.67 E-value=6.5e-09 Score=66.39 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=29.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~ 32 (82)
+|+||+||||||+++.|+++++..+++.|++.
T Consensus 9 ~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 9 FLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred EEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 48999999999999999999999999997653
No 82
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.67 E-value=7.6e-08 Score=63.72 Aligned_cols=79 Identities=16% Similarity=0.265 Sum_probs=46.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHhhC-----CCcCCH-------HHHHHHH---HHHHhcCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLLRREIASN-----RKIVPS-------EVTISLI---RKEIESSD 60 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~~~~~~~~-----~~~~~~-------~~~~~~l---~~~i~~~~ 60 (82)
+++|.|||||||+++.|++.++ ...++.+++..+..... ...... ......+ ...+.+..
T Consensus 43 vlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~ 122 (469)
T 1bif_A 43 VMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEG 122 (469)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4799999999999999998864 45666666544432110 000011 1111122 33333333
Q ss_pred CCeEEEeCCCCCHHHHHHH
Q 035937 61 NHKFLINGFPRSEENRAAF 79 (82)
Q Consensus 61 ~~~~iidg~p~~~~~~~~~ 79 (82)
+..+|+|....+..+++.+
T Consensus 123 G~~vV~D~tn~~~~~R~~~ 141 (469)
T 1bif_A 123 GHVAVFDATNTTRERRAMI 141 (469)
T ss_dssp CSEEEEESCCCSHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 6689999987777666554
No 83
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.64 E-value=2.6e-08 Score=58.29 Aligned_cols=32 Identities=19% Similarity=0.470 Sum_probs=26.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC-ceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL-THLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~-~~i~~~~~~ 32 (82)
+|+|||||||||+++.|+..++. .+++.+++.
T Consensus 6 ~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~ 38 (189)
T 2bdt_A 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38 (189)
T ss_dssp EEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHH
T ss_pred EEECCCCCcHHHHHHHHhcccCCeEEEcccchh
Confidence 37899999999999999987764 778876654
No 84
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.62 E-value=3.4e-08 Score=60.77 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=32.6
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIA 37 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~ 37 (82)
|+|++||||||+++.|.+.+|+++++.++.+++...
T Consensus 6 ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 6 LSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 799999999999999999899999999988877653
No 85
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.61 E-value=2.2e-08 Score=58.22 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=26.7
Q ss_pred CeecCCCCCHHHHHHHHHHHh---CCceeehH-HHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---GLTHLSAG-DLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~~~~i~~~-~~~~~ 34 (82)
+|+|++||||||+++.|++.+ |++++.++ +.++.
T Consensus 9 ~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 9 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence 379999999999999999987 87776543 44443
No 86
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.61 E-value=7.6e-09 Score=61.37 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCc
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLT 24 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~ 24 (82)
+|+|+|||||||+++.|++.++..
T Consensus 13 ~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 13 VLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc
Confidence 479999999999999999987543
No 87
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.61 E-value=2.4e-07 Score=62.63 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=43.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHHHHHHHHhhCCCcCCHHHHH-------HHHHHHHhcCCCCeEEEeC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLLRREIASNRKIVPSEVTI-------SLIRKEIESSDNHKFLING 68 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~i~~~~~~~~iidg 68 (82)
+|+|+|||||||+|+.|++.++ +.+++. |.+++.+.. .....+.... .++...+. .+..+|+|+
T Consensus 376 ~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~-D~ir~~l~~-~~~f~~~er~~~l~~i~~~~~~~l~--~G~~VI~d~ 451 (546)
T 2gks_A 376 WLTGLPCAGKSTIAEILATMLQARGRKVTLLDG-DVVRTHLSR-GLGFSKEDRITNILRVGFVASEIVK--HNGVVICAL 451 (546)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH-HHHHHHTCT-TCCSSHHHHHHHHHHHHHHHHHHHH--TTCEEEEEC
T ss_pred EccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc-hHhhhhhcc-cccccHHHHHHHHHHHHHHHHHHHh--CCCEEEEEc
Confidence 4789999999999999999876 366776 556655432 1122221111 12222222 256799997
Q ss_pred CCCCHHHHHHH
Q 035937 69 FPRSEENRAAF 79 (82)
Q Consensus 69 ~p~~~~~~~~~ 79 (82)
..-....++.+
T Consensus 452 ~~~~~~~r~~~ 462 (546)
T 2gks_A 452 VSPYRSARNQV 462 (546)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 54444444433
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.1e-08 Score=66.25 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+|...+.+++.+
T Consensus 219 LLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 219 LMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 5899999999999999999998665443
No 89
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.59 E-value=1.2e-07 Score=54.55 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=19.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|+||+|||++++.+++.+
T Consensus 47 ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 47 VLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999875
No 90
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.59 E-value=9e-08 Score=60.47 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=26.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce--eehHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH--LSAGDLLR 33 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~--i~~~~~~~ 33 (82)
+|+||||+|||++|+.+++..+..+ ++..++..
T Consensus 55 Ll~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 55 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp EEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred EEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 5899999999999999999988554 55555543
No 91
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.58 E-value=8.7e-09 Score=64.71 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=26.0
Q ss_pred eecCCCCCHHHHHHHHHHHhC-----CceeehHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLLR 33 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~~ 33 (82)
|+|++||||||+|+.|++.++ +.+++.|++.+
T Consensus 10 ItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 10 VTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp EESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 789999999999999999887 78999988874
No 92
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.58 E-value=1.6e-08 Score=65.00 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=28.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~ 31 (82)
+|+||+||||||+|+.|++.++..+++.|++
T Consensus 11 ~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred EEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4799999999999999999999999999876
No 93
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.9e-08 Score=65.48 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=24.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|.||||+|||++|+.+|..++.+++.+
T Consensus 210 LL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 210 LLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 5899999999999999999998665544
No 94
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.9e-08 Score=65.61 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+|..++.+++.+
T Consensus 219 LL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 219 LLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 5899999999999999999998665543
No 95
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.58 E-value=3e-08 Score=65.03 Aligned_cols=28 Identities=21% Similarity=0.419 Sum_probs=24.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|.||||+|||++|+.+|...+.+++++
T Consensus 186 LL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 186 ILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp EEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 5899999999999999999998666543
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.57 E-value=3.5e-08 Score=58.61 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=27.8
Q ss_pred eecCCCCCHHHHHHHHHHHhC--CceeehHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG--LTHLSAGDLLR 33 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~--~~~i~~~~~~~ 33 (82)
|+|++||||||+++.|+..++ +.+++.+..++
T Consensus 11 i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 11 IAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp EEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 789999999999999999888 88888776543
No 97
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.56 E-value=2.9e-08 Score=59.25 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=26.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhC------CceeehHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG------LTHLSAGDLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~------~~~i~~~~~~~~ 34 (82)
+|.|+|||||||+++.|++.++ +.+++. |.++.
T Consensus 29 ~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~-d~~r~ 67 (211)
T 1m7g_A 29 WLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG-DNIRF 67 (211)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH-HHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhccccCCcEEEECC-hHHhh
Confidence 4789999999999999998876 777775 44443
No 98
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.55 E-value=5.3e-08 Score=57.84 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+|||||||||+++.|++.++
T Consensus 16 ~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 16 VVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEECCTTSCHHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHhCc
Confidence 4789999999999999998874
No 99
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.53 E-value=1.3e-07 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|+||+|||++++.+++.+
T Consensus 47 ll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 47 ILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEESCGGGCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999876
No 100
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.51 E-value=6.2e-08 Score=58.93 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+||||+|||++|+.+++.++.+++.
T Consensus 43 ll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 43 LLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp EEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 489999999999999999998865543
No 101
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.51 E-value=5.4e-08 Score=59.43 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+||||+||||+|+.++..++.+++.
T Consensus 49 ll~G~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 49 LMVGPPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence 489999999999999999988755443
No 102
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.7e-08 Score=63.83 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+|...+.+++++
T Consensus 220 LLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 220 ILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp EEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred ceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 5899999999999999999998666544
No 103
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.49 E-value=2.9e-08 Score=63.78 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=28.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~ 31 (82)
+|+||+||||||++..||++++..++|.|.+
T Consensus 44 vI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 44 VLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred EEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4899999999999999999999999998766
No 104
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.2e-08 Score=64.46 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
||.||||+|||++|+.+|...+.+++.+
T Consensus 247 LLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 247 LLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp EECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 5899999999999999999998666543
No 105
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.48 E-value=7.9e-08 Score=59.32 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+||||+|||++|+.+++.++..++.
T Consensus 55 ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 55 LLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp EEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999998865544
No 106
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.48 E-value=8.2e-08 Score=59.60 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+||||+||||+|+.+++.++..++.
T Consensus 58 ll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 58 LLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp EEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 589999999999999999998855543
No 107
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.47 E-value=7.9e-08 Score=58.91 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+||||+|||++|+.+++..+.+++.
T Consensus 48 ll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 48 LLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999988755544
No 108
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.47 E-value=7.5e-08 Score=60.38 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=27.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce--eehHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH--LSAGDLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~--i~~~~~~~~~ 35 (82)
+|+||||+|||++|+.++..++..+ ++..++....
T Consensus 53 LL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 53 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp EEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 5899999999999999999888555 4555665443
No 109
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.47 E-value=7.8e-08 Score=61.54 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+++.++.+++.+
T Consensus 55 ll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 55 LLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 5899999999999999999988666543
No 110
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.45 E-value=1.1e-07 Score=58.53 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+++..+.+++.+
T Consensus 68 Ll~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 5899999999999999999988665543
No 111
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=59.24 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=23.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+|||||||||+++.++..++...+.+
T Consensus 48 lL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 48 LLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp EEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 4899999999999999998887554433
No 112
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.44 E-value=6e-07 Score=56.91 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++.+
T Consensus 48 ll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 48 LLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp EECBCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999766
No 113
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.44 E-value=1.1e-06 Score=59.81 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhC------CceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG------LTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~------~~~i~~~~~~~~~~ 36 (82)
+|+|+|||||||+|+.|+++++ +.+++. |.++..+
T Consensus 400 ~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~-D~ir~~l 440 (573)
T 1m8p_A 400 FLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG-DTVRHEL 440 (573)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH-HHHHHHT
T ss_pred EeecCCCCCHHHHHHHHHHHhcccCCceEEEECc-HHHHHHh
Confidence 4899999999999999999876 345554 5566543
No 114
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.43 E-value=1.9e-07 Score=56.93 Aligned_cols=23 Identities=48% Similarity=0.827 Sum_probs=20.8
Q ss_pred eecCCCCCHHHHHHHHHHHhCCc
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLT 24 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~ 24 (82)
|+||+||||||+++.|+..+|..
T Consensus 30 I~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 30 VSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EECSTTSSHHHHHHHHHHHHTGG
T ss_pred EECCCCCCHHHHHHHHHHHhchh
Confidence 78999999999999999888754
No 115
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.43 E-value=9.3e-08 Score=56.97 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=24.7
Q ss_pred eecCCCCCHHHHHHHHHHHhC-----CceeehHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDL 31 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~ 31 (82)
|.||+||||||+++.|+..+. ..+++.++.
T Consensus 27 I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp EECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 789999999999999998764 566776554
No 116
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.43 E-value=8.9e-08 Score=61.11 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=28.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~ 31 (82)
+|+||+||||||++..|+++++..++|.|.+
T Consensus 7 ~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 7 AIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4789999999999999999999988888765
No 117
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.42 E-value=8.8e-08 Score=61.02 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=27.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGD 30 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~ 30 (82)
+|+||+||||||++..|+++++..++|.|.
T Consensus 14 ~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 14 FLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred EEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 478999999999999999999988888865
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.39 E-value=2.9e-07 Score=57.95 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=27.4
Q ss_pred CeecCCCCCHHHHHHHHHHHh---C--CceeehHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---G--LTHLSAGDLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~--~~~i~~~~~~~~ 34 (82)
+|+||||+||||+++.+++.+ + +.+++..++..+
T Consensus 41 ll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~ 79 (324)
T 1l8q_A 41 FIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 79 (324)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
Confidence 589999999999999999865 3 667777776544
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.39 E-value=1.6e-07 Score=58.49 Aligned_cols=31 Identities=32% Similarity=0.552 Sum_probs=24.4
Q ss_pred CeecCCCCCHHHHHHHHHHHh---------CCceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---------GLTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---------~~~~i~~~~~ 31 (82)
+|+||||+|||++|+.+++.+ .+..++..++
T Consensus 71 ll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 589999999999999999876 3455555554
No 120
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.39 E-value=1.2e-06 Score=60.13 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=28.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh---CCceeehH-HHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---GLTHLSAG-DLLRRE 35 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~~~~i~~~-~~~~~~ 35 (82)
+|+|.|||||||+|+.|++.+ |+.++.++ |.++..
T Consensus 56 vLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~ 94 (630)
T 1x6v_B 56 WLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 94 (630)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhc
Confidence 489999999999999999998 88777764 566543
No 121
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.38 E-value=1.7e-07 Score=58.06 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=22.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL 26 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i 26 (82)
+|+||||+|||++|+.+++.++..++
T Consensus 54 ll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 54 LMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 58999999999999999998875443
No 122
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.38 E-value=1.7e-07 Score=62.13 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=25.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~ 29 (82)
+|+||||+||||+|+.||+.++.+++.++
T Consensus 54 Ll~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 54 LMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 57999999999999999999987776553
No 123
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.38 E-value=1.7e-07 Score=60.15 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=23.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+||||+|||++|+.+++.++.+++.
T Consensus 76 ll~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 76 LLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999998755543
No 124
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.38 E-value=4.3e-07 Score=53.51 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=27.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---G--LTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~--~~~i~~~~~~~~~~ 36 (82)
+|+|+||+||||+++.++... + +.+++..+++....
T Consensus 58 ~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 58 YLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 489999999999999998765 2 45578777766543
No 125
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.38 E-value=2e-07 Score=59.79 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=25.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee--ehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL--SAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i--~~~~~~ 32 (82)
+|+||||+|||++|+.+++.++..++ +..+++
T Consensus 88 LL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 88 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp EEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 58999999999999999999986554 444543
No 126
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.37 E-value=2.3e-07 Score=56.55 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=24.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce--eehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH--LSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~--i~~~~~ 31 (82)
+|+||||+||||+++.++...+... ++..++
T Consensus 53 ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 53 LLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 4899999999999999998876444 444343
No 127
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=2.9e-07 Score=54.19 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.9
Q ss_pred eecCCCCCHHHHHHHHHHHhC
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~ 22 (82)
|+||+||||||+++.|+..+.
T Consensus 12 l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 12 ISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHSS
T ss_pred EECcCCCCHHHHHHHHHhhCC
Confidence 789999999999999997653
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.36 E-value=1.9e-06 Score=54.54 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++.+
T Consensus 49 li~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 49 FIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999865
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.36 E-value=2.3e-07 Score=58.77 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.6
Q ss_pred CeecCCCCCHHHHHHHHHHHh-CCce
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-GLTH 25 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-~~~~ 25 (82)
+|+||||+|||++|+.+++.. +..+
T Consensus 49 LL~GppGtGKT~la~ala~~~~~~~~ 74 (322)
T 1xwi_A 49 LLFGPPGTGKSYLAKAVATEANNSTF 74 (322)
T ss_dssp EEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred EEECCCCccHHHHHHHHHHHcCCCcE
Confidence 589999999999999999987 5444
No 130
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.36 E-value=1.2e-06 Score=61.55 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=26.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee--ehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL--SAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i--~~~~~~ 32 (82)
+|+||||+|||++|+.+|..++..++ +..+++
T Consensus 242 LL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 242 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp EEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 58999999999999999999986655 444554
No 131
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.35 E-value=1.9e-06 Score=49.98 Aligned_cols=33 Identities=36% Similarity=0.448 Sum_probs=23.6
Q ss_pred eecCCCCCHHHHHHHHHHHhCCceeehHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGLTHLSAGDLLRREIA 37 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~~~i~~~~~~~~~~~ 37 (82)
|+|||||||||+++.+.. +...++. |.++....
T Consensus 14 l~G~nGsGKSTl~~~~~~--~~~~~~~-d~~~g~~~ 46 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHFK--PTEVISS-DFCRGLMS 46 (171)
T ss_dssp EECCTTSCHHHHHHHHSC--GGGEEEH-HHHHHHHC
T ss_pred EECCCCCCHHHHHHHHcc--CCeEEcc-HHHHHHhc
Confidence 799999999999998642 3455555 55555543
No 132
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=1.8e-07 Score=55.78 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+||+||||||+++.|++.+.
T Consensus 12 ~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 12 VLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEECCTTSCHHHHHHHHHHSTT
T ss_pred EEECcCCCCHHHHHHHHHhhCC
Confidence 3789999999999999998774
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.34 E-value=3.1e-06 Score=53.83 Aligned_cols=69 Identities=14% Similarity=0.255 Sum_probs=40.6
Q ss_pred CeecCCCCCHHHHHHHHHHHh----CCc--eeeh------HHHHHHHHhhCC-----CcCCHHHHHHHHHHHHhcCC-CC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF----GLT--HLSA------GDLLRREIASNR-----KIVPSEVTISLIRKEIESSD-NH 62 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~----~~~--~i~~------~~~~~~~~~~~~-----~~~~~~~~~~~l~~~i~~~~-~~ 62 (82)
+|+||||+||||+++.+++.+ ++. +++. .++++.....-+ ...+.....+.+.+.+.... ..
T Consensus 48 li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 127 (389)
T 1fnn_A 48 TLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYM 127 (389)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCE
T ss_pred EEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeE
Confidence 489999999999999999876 333 3442 134444332211 12233444555555555433 44
Q ss_pred eEEEeCC
Q 035937 63 KFLINGF 69 (82)
Q Consensus 63 ~~iidg~ 69 (82)
.+++|.+
T Consensus 128 vlilDE~ 134 (389)
T 1fnn_A 128 FLVLDDA 134 (389)
T ss_dssp EEEEETG
T ss_pred EEEEECc
Confidence 6788876
No 134
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.34 E-value=2.2e-07 Score=54.70 Aligned_cols=21 Identities=43% Similarity=0.643 Sum_probs=19.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+|||||||||+++.|+..+
T Consensus 10 ~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 10 VLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEECSTTSCHHHHHHHHHHCT
T ss_pred EEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999876
No 135
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.33 E-value=2.9e-07 Score=58.51 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCc
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLT 24 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~ 24 (82)
+|+||||+||||+++.++..++..
T Consensus 55 ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 55 LLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEECCCCCcHHHHHHHHHHHhCCC
Confidence 479999999999999999988644
No 136
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.33 E-value=2.4e-07 Score=54.06 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+||+||||||+++.|+..+
T Consensus 9 ~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 9 VLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999765
No 137
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.32 E-value=3.8e-07 Score=57.51 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=24.4
Q ss_pred eecCCCCCHHHHHHHHHHHhC-------CceeehHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG-------LTHLSAGDL 31 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~-------~~~i~~~~~ 31 (82)
|+|++||||||+++.|+..++ +.++++++.
T Consensus 85 I~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 789999999999999998765 556666654
No 138
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.32 E-value=2.9e-07 Score=60.74 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=23.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhC--Cceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG--LTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~--~~~i~ 27 (82)
+|.||||+|||++|+.+|+.++ ++++.
T Consensus 67 Ll~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 67 LLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred EEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 5899999999999999999887 55444
No 139
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.31 E-value=3.5e-07 Score=58.62 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL 26 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i 26 (82)
+|+||||+|||++|+.+++..+..++
T Consensus 121 Ll~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 121 LLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 58999999999999999999885554
No 140
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.30 E-value=4.2e-07 Score=57.31 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+++.++..++..
T Consensus 59 ll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 59 LFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 5899999999999999999988665443
No 141
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.30 E-value=4.3e-07 Score=56.14 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=22.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|+|||||||||+++.++...+...+.
T Consensus 77 ll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 77 LLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 489999999999999999887644433
No 142
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.29 E-value=4.4e-07 Score=58.64 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=23.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.+++.++..++.+
T Consensus 152 LL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 152 LLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp EEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 5899999999999999999988665443
No 143
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.28 E-value=2.6e-07 Score=60.62 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=27.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGD 30 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~ 30 (82)
+|.||+||||||++..|++.++..++|.|.
T Consensus 6 ~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred EEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 478999999999999999999988898865
No 144
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.27 E-value=4.9e-07 Score=60.33 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+|||++|+.++...+.+++.+
T Consensus 53 LL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 53 LLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 5899999999999999999988665443
No 145
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.26 E-value=9.8e-08 Score=56.55 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
.|.|++||||||+++.|++.++
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998875
No 146
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.26 E-value=3.7e-07 Score=61.38 Aligned_cols=30 Identities=7% Similarity=0.117 Sum_probs=25.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC-------ceeehHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL-------THLSAGD 30 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~-------~~i~~~~ 30 (82)
+|+|.+||||||+++.|+++++. .+++.|+
T Consensus 399 ~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 399 VLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp EECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred EecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 58999999999999999999986 5677654
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=5.6e-07 Score=60.21 Aligned_cols=28 Identities=36% Similarity=0.583 Sum_probs=24.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+||||+|+.+++.+++.++.+
T Consensus 81 LL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 81 MLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5899999999999999999998766544
No 148
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.25 E-value=2.3e-07 Score=52.46 Aligned_cols=31 Identities=23% Similarity=0.130 Sum_probs=24.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-CceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-LTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-~~~i~~~~~ 31 (82)
+|+|+||+|||++|+.+++..+ +.+++..++
T Consensus 31 ll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~ 62 (143)
T 3co5_A 31 FLTGEAGSPFETVARYFHKNGTPWVSPARVEY 62 (143)
T ss_dssp EEEEETTCCHHHHHGGGCCTTSCEECCSSTTH
T ss_pred EEECCCCccHHHHHHHHHHhCCCeEEechhhC
Confidence 5899999999999999987665 444555444
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.24 E-value=5.8e-07 Score=52.65 Aligned_cols=20 Identities=35% Similarity=0.665 Sum_probs=18.1
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+..+
T Consensus 6 l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 6 ISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EESSSSSSHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 78999999999999998654
No 150
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.23 E-value=5.3e-06 Score=50.56 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=25.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh-------CCceee--------hHHHHHHHHhhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-------GLTHLS--------AGDLLRREIASN 39 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-------~~~~i~--------~~~~~~~~~~~~ 39 (82)
+|.|++||||||+++.|++.+ ++.++. .++.+++.+..+
T Consensus 29 ~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~ 82 (227)
T 3v9p_A 29 TFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ 82 (227)
T ss_dssp EEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC
Confidence 368999999999999999877 444432 245567666543
No 151
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.23 E-value=1.5e-06 Score=61.10 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=34.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee--hHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS--AGDLLRREIASNRKIVPSEVTISLIRKEI 56 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 56 (82)
+|.||||+|||.+|+.+|...+.++++ ..+++...... ++..+.+++..+-
T Consensus 515 Ll~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGe-----se~~vr~lF~~Ar 567 (806)
T 3cf2_A 515 LFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGE-----SEANVREIFDKAR 567 (806)
T ss_dssp EEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSS-----CHHHHHHHHHHHH
T ss_pred EEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccch-----HHHHHHHHHHHHH
Confidence 589999999999999999999866654 44665443221 3444445544443
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.23 E-value=6.4e-07 Score=52.60 Aligned_cols=23 Identities=43% Similarity=0.784 Sum_probs=20.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL 23 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~ 23 (82)
.|+||+||||||+++.|+..+++
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 37999999999999999987763
No 153
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.23 E-value=5.7e-07 Score=53.64 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=25.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~~~ 32 (82)
+|+||||+||||+++.+++.+. +.+++..++.
T Consensus 56 ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 56 YLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 5899999999999999987643 5667766554
No 154
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.22 E-value=6.8e-07 Score=58.89 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=23.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh-CC--ceeehHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-GL--THLSAGDLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-~~--~~i~~~~~~~~ 34 (82)
+|+||||+|||++|+.++..+ +. ..++..+++..
T Consensus 171 LL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp EEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred EEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 589999999999999999988 54 44555565543
No 155
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.22 E-value=9.2e-07 Score=56.43 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=25.2
Q ss_pred eecCCCCCHHHHHHHHHHHhC-------CceeehHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG-------LTHLSAGDLL 32 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~-------~~~i~~~~~~ 32 (82)
|.||+||||||+++.|+..+. ...++.++..
T Consensus 97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 789999999999999987764 5567777654
No 156
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.22 E-value=7.6e-07 Score=58.89 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=24.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+||||+||||+|+.+++..+..++.+
T Consensus 54 LL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 54 ILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5899999999999999999988666554
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.20 E-value=4.1e-07 Score=51.99 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=24.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh---C--CceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---G--LTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~--~~~i~~~~~ 31 (82)
+|+||+|+||||+++.++..+ | ..+++..++
T Consensus 40 ~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 40 YVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASM 75 (149)
T ss_dssp EEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTS
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHh
Confidence 479999999999999999765 5 555665544
No 158
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.19 E-value=1.8e-07 Score=60.48 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH 25 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~ 25 (82)
+|+|+|||||||+++.|++.+++.+
T Consensus 28 ~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 28 ILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4799999999999999999988777
No 159
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.19 E-value=7.7e-07 Score=52.80 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=18.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||+||||||+++.|.+.+
T Consensus 5 Vi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 5 VISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEECCTTSSHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 489999999999999998765
No 160
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=1.4e-06 Score=57.43 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=26.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----C--CceeehHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----G--LTHLSAGDLLRR 34 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~--~~~i~~~~~~~~ 34 (82)
+|+||||+||||+++.++... + +.+++..++..+
T Consensus 134 ll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~ 174 (440)
T 2z4s_A 134 FIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 589999999999999999755 3 566777666543
No 161
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.18 E-value=8.5e-07 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|.|+||+|||++|+.+++..
T Consensus 28 ll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 28 WLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEESSTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999998754
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.17 E-value=1.1e-06 Score=52.12 Aligned_cols=21 Identities=38% Similarity=0.619 Sum_probs=18.6
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+||+||||||+.+.|+..+
T Consensus 8 ~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 8 VLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 379999999999999998755
No 163
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.17 E-value=7.6e-07 Score=53.63 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=23.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~ 29 (82)
+|+||+||||||+|..|+++.+ ..++.|
T Consensus 38 lI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 38 LITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp EEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred EEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 5899999999999999998876 666654
No 164
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.16 E-value=6.5e-07 Score=56.40 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL 26 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i 26 (82)
+|.||||+|||++|+.+++.++..++
T Consensus 50 ll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 50 LLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp EEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 58999999999999999998875543
No 165
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.16 E-value=9.9e-07 Score=59.16 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=24.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce--eehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH--LSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~--i~~~~~ 31 (82)
+|+||||+||||+++.++...+.++ ++..++
T Consensus 68 LL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~ 100 (499)
T 2dhr_A 68 LLVGPPGVGKTHLARAVAGEARVPFITASGSDF 100 (499)
T ss_dssp EEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence 5899999999999999998876444 444443
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.16 E-value=1.1e-06 Score=54.97 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL 26 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i 26 (82)
+|+|+||+|||++|+.+++.++..++
T Consensus 42 ll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 42 LLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp EEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 58999999999999999998875543
No 167
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.15 E-value=2.5e-06 Score=55.08 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=40.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh---C--CceeehHHHHHHHHhh--C--------CCcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---G--LTHLSAGDLLRREIAS--N--------RKIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~--~~~i~~~~~~~~~~~~--~--------~~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|.|||||||||++..++... + ..+++..+........ + ....+.+...+.+...+.....+.+|
T Consensus 65 ~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvV 144 (356)
T 3hr8_A 65 EIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIV 144 (356)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEE
Confidence 378999999999999998543 2 4566665432222111 0 11223344455555555544467889
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||..
T Consensus 145 IDSi 148 (356)
T 3hr8_A 145 VDSV 148 (356)
T ss_dssp EECT
T ss_pred ehHh
Confidence 9963
No 168
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.15 E-value=9.9e-07 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.706 Sum_probs=20.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+||||+|||++|+.+++.++
T Consensus 74 Ll~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 74 LIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEESTTSSHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999998886
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.14 E-value=1.2e-06 Score=58.47 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=25.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce--eehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH--LSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~--i~~~~~~ 32 (82)
+|+||||+|||++|+.+++..+.++ ++..++.
T Consensus 242 LL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 242 LLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp EEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 5899999999999999999988554 4554543
No 170
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.14 E-value=1.7e-06 Score=54.63 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=27.7
Q ss_pred CeecCCCCCHHHHHHHHHHHh----C--CceeehHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF----G--LTHLSAGDLLRREI 36 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~----~--~~~i~~~~~~~~~~ 36 (82)
+|+||||+|||++|+.++... + +.+++..+++.+..
T Consensus 156 ll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~ 197 (308)
T 2qgz_A 156 YLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVK 197 (308)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHH
Confidence 489999999999999998643 3 44578877776553
No 171
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.12 E-value=1.2e-06 Score=55.08 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=24.4
Q ss_pred eecCCCCCHHHHHHHHHHHhC-------Ccee-ehHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG-------LTHL-SAGDLL 32 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~-------~~~i-~~~~~~ 32 (82)
|.|++||||||+++.|++.++ ...+ +.++++
T Consensus 36 I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred EECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 789999999999999987664 3445 777654
No 172
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.12 E-value=4.9e-06 Score=53.32 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=36.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh--CCceeeh--HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCCCeEEEeCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF--GLTHLSA--GDLLRREIASNRKIVPSEVTISLIRKEIESSDNHKFLINGF 69 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~--~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~iidg~ 69 (82)
+|.||||+|||++|..++... ...+++. .+.+.. .. ...+...+.+.+.+.+.+ .+|||.+
T Consensus 127 LI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~-----~~-~~le~~l~~i~~~l~~~~--LLVIDsI 191 (331)
T 2vhj_A 127 IVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG-----YN-TDFNVFVDDIARAMLQHR--VIVIDSL 191 (331)
T ss_dssp EEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTT-----CB-CCHHHHHHHHHHHHHHCS--EEEEECC
T ss_pred EEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhh-----hh-cCHHHHHHHHHHHHhhCC--EEEEecc
Confidence 479999999999999998653 3556666 211100 00 122333444455555433 7899975
No 173
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.12 E-value=9.7e-07 Score=53.42 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=21.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCcee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHL 26 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i 26 (82)
+|.||||+||||+|..+++.+.-..+
T Consensus 62 li~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 62 VFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCee
Confidence 47999999999999999988753333
No 174
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.12 E-value=1.3e-06 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=18.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|+||+|||++++.+++.+
T Consensus 42 ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999764
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.11 E-value=1.4e-06 Score=52.18 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+||+||||||+++.|++.+.
T Consensus 23 vl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 23 VLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEECCTTSSHHHHHHHHHHHCT
T ss_pred EEECcCCCCHHHHHHHHHhhCC
Confidence 3789999999999999998764
No 176
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.11 E-value=1.4e-06 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+|+||+||||+++.+++.++
T Consensus 49 ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 49 LFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEECSTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999998764
No 177
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.11 E-value=1.3e-06 Score=53.42 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=23.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC-----CceeehHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG-----LTHLSAGD 30 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~-----~~~i~~~~ 30 (82)
+|+|+||+|||++|+.+++... +.+++..+
T Consensus 33 ll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 33 LIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp EEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred EEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 5899999999999999997653 55566544
No 178
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.11 E-value=2.8e-05 Score=46.53 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=28.0
Q ss_pred eecCCCCCHHHHHHHHHHHh--CCceee--------hHHHHHHHHhhC
Q 035937 2 LSGGPGSGKGTQCTKIVKNF--GLTHLS--------AGDLLRREIASN 39 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~--~~~~i~--------~~~~~~~~~~~~ 39 (82)
|-|+.||||||+++.|++.+ ++.++. .++.+++....+
T Consensus 7 ~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~ 54 (205)
T 4hlc_A 7 FEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEG 54 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSS
T ss_pred EECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcc
Confidence 56999999999999999887 344332 456777766553
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.10 E-value=1.7e-06 Score=51.24 Aligned_cols=31 Identities=23% Similarity=0.407 Sum_probs=23.3
Q ss_pred eecCCCCCHHHHHHHHHHHh---C--CceeehHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNF---G--LTHLSAGDLL 32 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~---~--~~~i~~~~~~ 32 (82)
|+|++||||||+++.|+..+ + +.+++.+...
T Consensus 27 i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 78999999999999999764 3 3444555443
No 180
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.09 E-value=1.5e-06 Score=53.98 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+|||++|+.+++.+
T Consensus 51 ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 51 LFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEESCSSSSHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 489999999999999999875
No 181
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.09 E-value=1.9e-06 Score=58.08 Aligned_cols=25 Identities=36% Similarity=0.618 Sum_probs=21.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCce
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTH 25 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~ 25 (82)
+|+||||+||||+++.++..++..+
T Consensus 112 ll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 112 CLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp EEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCe
Confidence 4899999999999999998887443
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.08 E-value=2.1e-06 Score=51.04 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=18.2
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+..+
T Consensus 25 l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 78999999999999998765
No 183
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.08 E-value=1.9e-06 Score=57.09 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.5
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+|||++++.+++..
T Consensus 205 LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 205 VLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEESCTTTTTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999886
No 184
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.07 E-value=6.3e-07 Score=55.05 Aligned_cols=26 Identities=15% Similarity=0.182 Sum_probs=22.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh-CCcee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-GLTHL 26 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-~~~~i 26 (82)
+|.|++||||||+++.|++.+ ++.++
T Consensus 28 ~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 28 SIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 378999999999999999998 55555
No 185
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.07 E-value=2.2e-06 Score=51.53 Aligned_cols=20 Identities=40% Similarity=0.778 Sum_probs=18.4
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+..+
T Consensus 28 lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 28 ICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EECSTTSSHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhhC
Confidence 78999999999999998765
No 186
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.06 E-value=1e-06 Score=59.66 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=25.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC------CceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG------LTHLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~------~~~i~~~~~~ 32 (82)
+|+|++||||||+++.|+..++ +.+++.+++.
T Consensus 373 ~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 373 FFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred EEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 4799999999999999998874 4457776554
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.05 E-value=5.1e-06 Score=53.41 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=39.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHhh--C--------CCcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAGDLLRREIAS--N--------RKIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~~~~~~~~~~--~--------~~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|.|+|||||||++..++... ...+++...-....... + ....+.+...+++...+.+...+.+|
T Consensus 65 ~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIV 144 (349)
T 2zr9_A 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIV 144 (349)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 478999999999999988432 35667664322222111 1 11122333445555555444467889
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||..
T Consensus 145 IDsl 148 (349)
T 2zr9_A 145 IDSV 148 (349)
T ss_dssp EECG
T ss_pred EcCh
Confidence 9964
No 188
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.05 E-value=2.2e-06 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
.|+||+||||||+.+.|+..+.
T Consensus 20 ~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 20 IVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEECCTTSCHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhccCC
Confidence 3789999999999999987654
No 189
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.05 E-value=2.2e-06 Score=54.52 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=19.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++..
T Consensus 49 ll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 49 LFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999765
No 190
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.04 E-value=9.4e-06 Score=51.99 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=17.2
Q ss_pred ecCCCCCHHHHHHHHHHHh
Q 035937 3 SGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 3 ~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||+||||+++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHHH
Confidence 8999999999999998654
No 191
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.04 E-value=1.2e-06 Score=52.78 Aligned_cols=20 Identities=40% Similarity=0.521 Sum_probs=12.5
Q ss_pred eecCCCCCHHHHHHHHH-HHh
Q 035937 2 LSGGPGSGKGTQCTKIV-KNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~-~~~ 21 (82)
|+||+||||||+++.|+ ..+
T Consensus 32 l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 32 LSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECSCC----CHHHHHHC---
T ss_pred EECCCCCCHHHHHHHHHhcCC
Confidence 79999999999999999 654
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.04 E-value=2.1e-06 Score=54.36 Aligned_cols=21 Identities=24% Similarity=0.632 Sum_probs=19.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++.+
T Consensus 50 ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 50 LFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEECSSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999874
No 193
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.04 E-value=2.3e-06 Score=51.49 Aligned_cols=18 Identities=39% Similarity=0.833 Sum_probs=16.4
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
.|+|||||||||+++.++
T Consensus 34 ~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 34 LLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 378999999999999887
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.04 E-value=2.2e-06 Score=53.76 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
++.||||+|||++++.+++.++..++.+
T Consensus 52 L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 52 LHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp EECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred EeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3567799999999999999988665544
No 195
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.03 E-value=2.9e-06 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|.|++||||||+++.|++.++
T Consensus 6 ~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 6 SIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEcCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999983
No 196
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.03 E-value=2.4e-06 Score=50.82 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+|||||||||+++.++.
T Consensus 30 l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEESTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 789999999999999986
No 197
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.02 E-value=2.7e-06 Score=59.74 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=22.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|.||||+||||+|+.+|..++..++.
T Consensus 515 LL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 515 LFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred EEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 589999999999999999888754443
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.02 E-value=2.1e-06 Score=60.28 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+|||||||||+|+.++..++..++.+
T Consensus 242 LL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 242 LLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp EECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 4889999999999999999888655443
No 199
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=2.6e-06 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=18.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++.+
T Consensus 62 ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 62 LFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999764
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.01 E-value=3.6e-06 Score=54.72 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceee
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLS 27 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~ 27 (82)
+|.|||||||||+++.|+..++..++.
T Consensus 173 ~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 173 LFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred EEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 378999999999999999888765555
No 201
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.01 E-value=2.4e-06 Score=50.56 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=22.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhC--Cceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG--LTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~--~~~i~~ 28 (82)
+|+|++|||||++|..++.. + ..|+..
T Consensus 3 lV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 3 LVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 58999999999999999976 6 345555
No 202
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.01 E-value=6.7e-06 Score=53.04 Aligned_cols=69 Identities=13% Similarity=0.202 Sum_probs=40.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehHH----HHHHHHhhC------CCcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAGD----LLRREIASN------RKIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~~----~~~~~~~~~------~~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|.|+||+||||+|..++... ...+++... ......... ....+.+...+++...+.....+.+|
T Consensus 67 ~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVV 146 (356)
T 1u94_A 67 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 146 (356)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 478999999999999988542 466777732 221111100 01112344455555555444467899
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||..
T Consensus 147 IDsl 150 (356)
T 1u94_A 147 VDSV 150 (356)
T ss_dssp EECG
T ss_pred EcCH
Confidence 9963
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.00 E-value=3.4e-06 Score=53.50 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=23.1
Q ss_pred eecCCCCCHHHHHHHHHHHhC-------CceeehHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG-------LTHLSAGDL 31 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~-------~~~i~~~~~ 31 (82)
|.|++||||||+++.|+..+. +.+++.++.
T Consensus 95 I~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred EECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 789999999999999986542 455666543
No 204
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.97 E-value=1.6e-06 Score=54.68 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.1
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+|+||+|||++|+.+++..+
T Consensus 49 Ll~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 49 LVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEECCGGGCTTHHHHHHHHHSC
T ss_pred EEECCCCccHHHHHHHHHHhCc
Confidence 5899999999999999998775
No 205
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.97 E-value=2.1e-06 Score=54.73 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=19.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+|||++++.+++.+
T Consensus 49 li~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 49 YITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp EEECCCSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999776
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.95 E-value=4.3e-06 Score=58.10 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=24.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh----------CCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF----------GLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~----------~~~~i~~ 28 (82)
+|+||||+|||++|+.+++.+ +...+.+
T Consensus 205 LL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp EEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred EEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 589999999999999999886 6666655
No 207
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=4.2e-06 Score=49.67 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.|+|||||||+++.++..
T Consensus 27 ~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 27 ALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999843
No 208
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.95 E-value=1.1e-05 Score=52.27 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=40.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHh-h-C--------CCcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAGDLLRREIA-S-N--------RKIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~~~~~~~~~-~-~--------~~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|.|+||+||||+|..++... ...+++...-...... . + ....+.+...+.+...+.......+|
T Consensus 78 ~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVV 157 (366)
T 1xp8_A 78 EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVV 157 (366)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEE
Confidence 478999999999999887542 3667776542222211 1 1 11123344455565555444467889
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||..
T Consensus 158 IDsl 161 (366)
T 1xp8_A 158 VDSV 161 (366)
T ss_dssp EECT
T ss_pred EeCh
Confidence 9964
No 209
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=3.2e-06 Score=53.43 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=18.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.++..+
T Consensus 40 ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 40 LLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEECSTTSSHHHHHHTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999853
No 210
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.94 E-value=4.5e-06 Score=50.31 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=28.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhC---Cceeeh--------HHHHHHHHhhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG---LTHLSA--------GDLLRREIASN 39 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~---~~~i~~--------~~~~~~~~~~~ 39 (82)
+|.|++||||||+++.|++.+. +.++.+ ++.+++.+..+
T Consensus 10 ~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~ 59 (213)
T 4edh_A 10 TLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAP 59 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcC
Confidence 3789999999999999998774 444433 55677766543
No 211
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.93 E-value=6.1e-06 Score=47.62 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.3
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|.||+||||||+.+.|+..+
T Consensus 38 L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 38 LNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EECSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 78999999999999998765
No 212
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.92 E-value=4.3e-06 Score=49.45 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=22.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhC--CceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG--LTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~--~~~i~~~ 29 (82)
+|.|+|||||||++..++...+ ..+++..
T Consensus 24 ~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 24 QVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 4789999999999999986433 4555554
No 213
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.92 E-value=6.2e-06 Score=48.85 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=18.3
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|++||||||+.+.|+..+
T Consensus 6 i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EESCCSSCHHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhhc
Confidence 78999999999999998765
No 214
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.92 E-value=4e-06 Score=51.13 Aligned_cols=19 Identities=37% Similarity=0.337 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 36 iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 36 IMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 7899999999999999743
No 215
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.92 E-value=2.2e-05 Score=47.07 Aligned_cols=18 Identities=39% Similarity=0.833 Sum_probs=16.0
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|.|+||+|||++|..++
T Consensus 34 ~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 34 LLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 478999999999998875
No 216
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.91 E-value=5.3e-06 Score=51.58 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=19.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++.+
T Consensus 50 ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 50 LFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHh
Confidence 589999999999999999875
No 217
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.90 E-value=5.8e-06 Score=50.64 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|.||+||||||+.+.|+--
T Consensus 29 liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999843
No 218
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.90 E-value=5.8e-06 Score=57.30 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=24.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCc--eeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLT--HLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~--~i~~~~~ 31 (82)
+|+||||+|||++|+.+++.++.. .++++++
T Consensus 492 ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 492 LFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred EEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 589999999999999999988744 4444443
No 219
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.89 E-value=6e-06 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL 23 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~ 23 (82)
+|+||||+||||+++.+++.++.
T Consensus 42 ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 42 LFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHHHHhCC
Confidence 48999999999999999987753
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.89 E-value=6.2e-06 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=18.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+||+||||||+.+.++..+
T Consensus 29 ~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 29 LVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEECSTTCSHHHHHHHHHHHH
T ss_pred EEECCCCccHHHHHHHHHHhC
Confidence 379999999999999998643
No 221
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.89 E-value=8e-06 Score=51.08 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=25.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeehHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSAGD 30 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~~~ 30 (82)
+|+|++|+||||+++.+++..+..+++..+
T Consensus 35 ~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 35 LLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp EEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred EEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 489999999999999999888877777644
No 222
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.89 E-value=4.5e-06 Score=50.52 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 35 iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 35 IIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEECTTSCHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999743
No 223
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.88 E-value=3.1e-06 Score=51.84 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|.|++||||||+++.|++.+.
T Consensus 31 ~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 31 VIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEESTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999998774
No 224
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.88 E-value=5.7e-06 Score=53.08 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.7
Q ss_pred eecCCCCCHHHHHHHHHHHhCC
Q 035937 2 LSGGPGSGKGTQCTKIVKNFGL 23 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~~ 23 (82)
|+|++||||||+++.|+..+..
T Consensus 175 IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 175 ILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EECCTTSHHHHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHhCC
Confidence 7899999999999999987754
No 225
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.88 E-value=6.5e-06 Score=51.04 Aligned_cols=21 Identities=29% Similarity=0.735 Sum_probs=19.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+|||++++.+++.+
T Consensus 42 ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 42 LFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEESSSSSSHHHHHHHHHHHH
T ss_pred EEECcCCcCHHHHHHHHHHHh
Confidence 589999999999999999875
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.87 E-value=1.2e-05 Score=53.38 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=18.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|++||||||++..||..+
T Consensus 104 livG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHH
Confidence 478999999999999998543
No 227
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.86 E-value=7.4e-06 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.8
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL 23 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~ 23 (82)
+|.|++||||||+++.|++.++.
T Consensus 9 ~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 9 LIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999874
No 228
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.85 E-value=5.9e-06 Score=51.59 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 39 iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 39 ILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 7899999999999999743
No 229
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.85 E-value=7.8e-06 Score=48.10 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|+|||||||++..++.++
T Consensus 7 vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 7 VITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999997776554
No 230
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.85 E-value=8.3e-06 Score=48.87 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
.|.|||||||||++..++.
T Consensus 28 ~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 28 EMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHH
Confidence 3789999999999999987
No 231
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.84 E-value=6.2e-06 Score=51.19 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+||+||||||+.+.|+-
T Consensus 42 liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EECCTTSCHHHHHHHHTS
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 789999999999999974
No 232
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.84 E-value=1e-05 Score=51.88 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=22.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----C--CceeehHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----G--LTHLSAGDL 31 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~--~~~i~~~~~ 31 (82)
+|.|+||+||||++..++... + ..+++..+-
T Consensus 32 eI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 32 ILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 378999999999988876332 3 566776543
No 233
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.84 E-value=6.6e-06 Score=50.92 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 37 liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 37 IIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999843
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.84 E-value=6.1e-06 Score=49.56 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 27 liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 27 GLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp EECCTTSSTTHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 789999999999999974
No 235
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.83 E-value=1.2e-05 Score=47.10 Aligned_cols=20 Identities=35% Similarity=0.235 Sum_probs=17.7
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|++||||||++..|+..+
T Consensus 9 i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 78999999999999998653
No 236
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.83 E-value=9.2e-06 Score=49.88 Aligned_cols=19 Identities=32% Similarity=0.449 Sum_probs=17.3
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 34 l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 34 LMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EECSTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999863
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.82 E-value=7.3e-06 Score=50.02 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 36 i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EECSTTSSHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999743
No 238
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.82 E-value=7.3e-06 Score=50.54 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 38 liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 38 IIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999743
No 239
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=9.4e-06 Score=50.40 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+||||+++.+++.+
T Consensus 46 ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 46 IISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHHHh
Confidence 589999999999999999874
No 240
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.82 E-value=7.4e-06 Score=51.55 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~ 29 (82)
+|+|+||+|||++|+.+++.. .+..++..
T Consensus 29 Li~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 29 LIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp EEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred EEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 589999999999999999743 35556543
No 241
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.81 E-value=1.1e-05 Score=51.10 Aligned_cols=20 Identities=25% Similarity=0.670 Sum_probs=18.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+.-+
T Consensus 131 IvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhhc
Confidence 79999999999999998766
No 242
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.81 E-value=7.7e-06 Score=49.96 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|.||+||||||+.+.|+--
T Consensus 37 l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 37 LIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999843
No 243
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.81 E-value=7.9e-06 Score=49.32 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 40 iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999743
No 244
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.81 E-value=5.6e-06 Score=55.54 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|.||||+|||++|+.+++..+
T Consensus 45 LL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 45 FLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEECCSSSSHHHHHHHGGGGBS
T ss_pred EeecCchHHHHHHHHHHHHHHh
Confidence 5899999999999999998763
No 245
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.81 E-value=9.8e-06 Score=48.60 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=21.4
Q ss_pred CeecCCCCCHHHHHHHHHHH-----hCCceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN-----FGLTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~-----~~~~~i~~~ 29 (82)
+|.|+|||||||++..++.. .+..+++..
T Consensus 27 ~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 27 LLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 47899999999998888643 235556554
No 246
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.80 E-value=9.9e-06 Score=57.04 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=19.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|+||+|||++++.+++..
T Consensus 195 lL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 195 VLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999876
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.80 E-value=8.2e-06 Score=50.73 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.|+|||||||+++.++..
T Consensus 39 ~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 39 MVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999998843
No 248
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.80 E-value=1.1e-05 Score=50.10 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=17.3
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 51 l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECCTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999863
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.80 E-value=1.2e-05 Score=50.25 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.5
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|.||||+|||++|..|+..++
T Consensus 108 ~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 108 WLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp EEECSTTSSHHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHHhhhc
Confidence 5899999999999999998653
No 250
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.80 E-value=8.3e-06 Score=50.60 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 55 liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EEcCCCCcHHHHHHHHHcC
Confidence 7899999999999999843
No 251
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.80 E-value=1.3e-05 Score=50.66 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.8
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+..+
T Consensus 107 lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 107 VVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 78999999999999998554
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.79 E-value=1.3e-05 Score=55.68 Aligned_cols=32 Identities=13% Similarity=0.394 Sum_probs=25.6
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAGDLL 32 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~~~~ 32 (82)
+|+||||+|||++|+.+++.+ .+..++++++.
T Consensus 525 Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 525 IFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 589999999999999999875 36666666554
No 253
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.79 E-value=1.4e-05 Score=47.23 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=21.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+|++|+||||+|..|.+ .|...++-
T Consensus 20 li~G~SGaGKStlal~L~~-rG~~lvaD 46 (181)
T 3tqf_A 20 LITGEANIGKSELSLALID-RGHQLVCD 46 (181)
T ss_dssp EEEESSSSSHHHHHHHHHH-TTCEEEES
T ss_pred EEEcCCCCCHHHHHHHHHH-cCCeEecC
Confidence 5899999999999999976 46655554
No 254
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.79 E-value=8.7e-06 Score=49.78 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 33 i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 33 FAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999843
No 255
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.79 E-value=9e-06 Score=49.91 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=17.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 40 i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 78999999999999997543
No 256
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.78 E-value=1.2e-05 Score=48.87 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=27.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC----ceee---------hHHHHHHHHhh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL----THLS---------AGDLLRREIAS 38 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~----~~i~---------~~~~~~~~~~~ 38 (82)
+|.|++||||||+++.|++.++. ..+. +++.+++....
T Consensus 25 ~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~ 75 (223)
T 3ld9_A 25 TFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFK 75 (223)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhC
Confidence 36899999999999999986543 3332 35667776654
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.78 E-value=9.1e-06 Score=50.21 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|.||+||||||+.+.|+--
T Consensus 46 l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 46 LIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999743
No 258
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.78 E-value=1.4e-05 Score=50.43 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.9
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+..+
T Consensus 105 lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 105 IVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999998654
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.77 E-value=9.7e-06 Score=49.20 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+..
T Consensus 39 i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 39 VAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999844
No 260
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.76 E-value=1e-05 Score=49.81 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|.||+||||||+.+.|+--
T Consensus 31 liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 31 LVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 7899999999999999743
No 261
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.76 E-value=1e-05 Score=50.56 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 52 liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 52 LYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 7899999999999999843
No 262
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.76 E-value=1.1e-05 Score=50.23 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 50 i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 50 LVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 7899999999999999744
No 263
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.76 E-value=1.8e-05 Score=46.40 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|+|++||||||+++.|...
T Consensus 10 ~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 10 AFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHh
Confidence 37899999999999999865
No 264
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.75 E-value=1.1e-05 Score=50.01 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+--
T Consensus 38 liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 38 VAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 7899999999999999743
No 265
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.75 E-value=1.1e-05 Score=49.84 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 51 i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 51 LVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EECSTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhcc
Confidence 7899999999999999754
No 266
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.75 E-value=1.4e-05 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|.|++||||||+++.|++.+
T Consensus 7 ~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 7 VIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999776
No 267
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.75 E-value=1.2e-05 Score=46.50 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.0
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|++||||||+.+.|.--+
T Consensus 30 ~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 30 AIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEECTTSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999997543
No 268
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.75 E-value=1.2e-05 Score=49.77 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|.|+|||||||++..++.
T Consensus 34 ~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 34 ALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHH
Confidence 3789999999999998874
No 269
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.74 E-value=1.4e-05 Score=51.74 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 35 llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 35 IIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCchHHHHHHHHhc
Confidence 789999999999999984
No 270
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.74 E-value=1.8e-05 Score=50.59 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=17.8
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+++.|+..+
T Consensus 134 lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 134 FVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998554
No 271
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.74 E-value=1.2e-05 Score=49.59 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+.
T Consensus 36 l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 36 VLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EECCSSSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 789999999999999974
No 272
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.73 E-value=1.6e-05 Score=50.38 Aligned_cols=21 Identities=48% Similarity=0.817 Sum_probs=18.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+|++||||||++..||..+
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCChHHHHHHHHHHHH
Confidence 378999999999999998654
No 273
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.73 E-value=6.9e-06 Score=48.00 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.0
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|++||||||+++.|+..+
T Consensus 7 IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEESCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 78999999999999998654
No 274
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.73 E-value=3.5e-05 Score=58.62 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=45.3
Q ss_pred CeecCCCCCHHHHHHHHHHH-----hCCceeehHHHHHHHH-hhCC---------CcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKN-----FGLTHLSAGDLLRREI-ASNR---------KIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~-----~~~~~i~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|+||||+|||++|..++.. ....++++.+.+.... ..-+ .+.+.+...+.+...+++...+.+|
T Consensus 1431 ll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~lVV 1510 (2050)
T 3cmu_A 1431 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 1510 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCEEE
Confidence 47999999999999988743 2366788764432222 1112 2335555666777676666678899
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||.+
T Consensus 1511 IDsi 1514 (2050)
T 3cmu_A 1511 VDSV 1514 (2050)
T ss_dssp ESCG
T ss_pred EcCh
Confidence 9965
No 275
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.71 E-value=1.8e-05 Score=51.16 Aligned_cols=18 Identities=44% Similarity=0.457 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 46 llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EECSTTSSHHHHHHHHHT
T ss_pred EECCCCCcHHHHHHHHhC
Confidence 789999999999999983
No 276
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.71 E-value=1.7e-05 Score=51.66 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+||+||||||+.+.|+-
T Consensus 34 llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 34 FVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EEcCCCchHHHHHHHHHc
Confidence 789999999999999983
No 277
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.71 E-value=1.7e-05 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=18.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||+||||||+.+.|+..+
T Consensus 140 ~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 140 LVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEECSSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhhc
Confidence 479999999999999998654
No 278
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.71 E-value=1.5e-05 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+||||+||||+++.++..++
T Consensus 64 ll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 64 LLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp EEECCTTSSHHHHHHHHHHTSC
T ss_pred EEEeCCCCCHHHHHHHHhccCC
Confidence 4899999999999999998764
No 279
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.70 E-value=1.8e-05 Score=47.24 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=15.8
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+++|+||||||++|..+.
T Consensus 9 l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 9 LITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHH
Confidence 589999999999988764
No 280
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.70 E-value=1.8e-05 Score=51.11 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 34 llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 34 LLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EECSTTSSHHHHHHHHHT
T ss_pred EEcCCCchHHHHHHHHHC
Confidence 789999999999999983
No 281
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.70 E-value=1.5e-05 Score=49.47 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|.||+||||||+.+.|+-.
T Consensus 35 i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 35 ILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999743
No 282
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.69 E-value=2.2e-05 Score=48.83 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.9
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|.|++||||||+.+.|+...
T Consensus 7 lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 78999999999999998654
No 283
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.69 E-value=1.9e-05 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=17.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||+||||||+.+.++..+
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHhcc
Confidence 489999999999999887543
No 284
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.69 E-value=2e-05 Score=51.03 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 34 llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 34 LLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCchHHHHHHHHhc
Confidence 789999999999999984
No 285
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.68 E-value=2.2e-05 Score=49.82 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.6
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL 23 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~ 23 (82)
+|.||||+|||++|+.+++.+..
T Consensus 28 L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 28 LIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEECCCCchHHHHHHHHHHHHhC
Confidence 57999999999999999988764
No 286
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.68 E-value=2.1e-05 Score=51.03 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 34 llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EECSTTSSHHHHHHHHHT
T ss_pred EECCCCcHHHHHHHHHHc
Confidence 789999999999999983
No 287
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.67 E-value=2.1e-05 Score=51.03 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 42 llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCChHHHHHHHHHc
Confidence 789999999999999983
No 288
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.67 E-value=2.3e-05 Score=47.62 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=18.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|+||+||||.+..++.++
T Consensus 16 litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 16 FITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHH
Confidence 478999999999998888665
No 289
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.67 E-value=2.6e-05 Score=50.42 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.9
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|++||||||+++.|+..+
T Consensus 162 lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 162 IVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHhhc
Confidence 78999999999999998654
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.67 E-value=2.1e-05 Score=49.46 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|+|++||||||++..|+..
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999843
No 291
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.66 E-value=1.6e-05 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.2
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
.|+||+||||||+.+.|+..+.
T Consensus 179 ~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 179 VVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp EEEESSSSCHHHHHHHHHTTSC
T ss_pred EEECCCCCCHHHHHHHHHhcCC
Confidence 3789999999999999987654
No 292
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.66 E-value=2.2e-05 Score=50.90 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+||+||||||+.+.|+-
T Consensus 59 IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 59 VIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EEcCCCchHHHHHHHHhc
Confidence 789999999999999984
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.66 E-value=2.2e-05 Score=50.41 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.2
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|+|||||||+++.++...
T Consensus 136 I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 78999999999999998665
No 294
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.66 E-value=1.2e-05 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.3
Q ss_pred eecCCCCCHHHHHHHHHHHhC
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~ 22 (82)
|.|++||||||+++.|+...+
T Consensus 25 i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 25 IEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp EECSTTSCHHHHHHTTGGGTT
T ss_pred EECCCCCCHHHHHHHHHhccC
Confidence 789999999999999987633
No 295
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.65 E-value=2.6e-05 Score=54.06 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|+||+|||++++.+++..
T Consensus 211 lL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 211 LLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999876
No 296
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.64 E-value=0.00015 Score=45.72 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=18.8
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
++.||||+||||+|+.+++.+
T Consensus 22 Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 22 LINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp EEECSSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999853
No 297
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.61 E-value=3.1e-05 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=18.9
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+||+||||||+.+.++..+.
T Consensus 171 ~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 171 LVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEECSTTSCHHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhhcC
Confidence 4899999999999999986553
No 298
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.61 E-value=1.6e-05 Score=51.19 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 31 llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 31 ILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EECCCTHHHHHHHHHHHT
T ss_pred EECCCCccHHHHHHHHHc
Confidence 789999999999999984
No 299
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.61 E-value=2.4e-05 Score=55.09 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||||+|||++|+.|++.+
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999876
No 300
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.60 E-value=2.3e-05 Score=49.25 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+.-
T Consensus 69 i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 69 VAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEESTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 7899999999999999743
No 301
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.60 E-value=2.9e-05 Score=45.43 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|+|++||||||+.+.++..
T Consensus 9 ~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 9 VLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999854
No 302
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.60 E-value=3.7e-05 Score=49.09 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=17.2
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+|+|||||||+.+.|+..
T Consensus 60 i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 60 ITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 7899999999999999853
No 303
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.59 E-value=3.7e-05 Score=44.84 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|+|++||||||+.+.++..
T Consensus 33 ~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 33 VLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999854
No 304
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.58 E-value=3.2e-05 Score=50.49 Aligned_cols=18 Identities=39% Similarity=0.604 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 52 llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 52 LLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCChHHHHHHHHhC
Confidence 789999999999999984
No 305
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.57 E-value=4.2e-05 Score=51.47 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.8
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|++||||||+++.|+..+
T Consensus 298 LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCcccHHHHHHHHHHHh
Confidence 78999999999999998654
No 306
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.57 E-value=2.1e-05 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=18.4
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+|++||||||+.+.|+..+
T Consensus 175 ~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 175 IVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp EEEESTTSCHHHHHHHGGGGS
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999998654
No 307
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.56 E-value=3.7e-05 Score=43.78 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+||+||||||+...+.-
T Consensus 27 ~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4899999999999999874
No 308
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.55 E-value=5.4e-05 Score=47.35 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=23.0
Q ss_pred CeecCCCCCHHHHHHHHHHHhC--CceeehH
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG--LTHLSAG 29 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~--~~~i~~~ 29 (82)
+|.|++|+|||++++.+++..+ ..+++..
T Consensus 34 ~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 34 LVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 4899999999999999998754 4455543
No 309
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.54 E-value=5.6e-05 Score=44.90 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=20.3
Q ss_pred eecCCCCCHHHHHHHHHHHh---CCcee
Q 035937 2 LSGGPGSGKGTQCTKIVKNF---GLTHL 26 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~---~~~~i 26 (82)
|-|+-||||||+++.|++.+ |..++
T Consensus 5 ~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 56999999999999999765 45444
No 310
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.54 E-value=1.6e-05 Score=51.21 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 36 llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EECSCHHHHHHHHHHHHT
T ss_pred EECCCCCcHHHHHHHHhC
Confidence 789999999999999983
No 311
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.53 E-value=4.2e-05 Score=50.86 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=17.2
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+++.|+..
T Consensus 143 IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 143 IVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp EEESTTSSHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 7899999999999999853
No 312
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.53 E-value=5.4e-05 Score=48.52 Aligned_cols=19 Identities=47% Similarity=0.562 Sum_probs=17.4
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+|+|||||||+.+.|...
T Consensus 79 lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 79 LSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999864
No 313
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.52 E-value=4.4e-05 Score=50.34 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|.|+|||||||++..+++.+
T Consensus 49 li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 49 TINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHH
Confidence 589999999999999888654
No 314
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.52 E-value=5.1e-05 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.5
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|.+||||||+++.|+..+
T Consensus 34 ~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 34 NIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999998764
No 315
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.51 E-value=4.2e-05 Score=50.60 Aligned_cols=21 Identities=43% Similarity=0.569 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|++||||||++..|+..+
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999998543
No 316
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.50 E-value=2.1e-05 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=17.7
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 85 ivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSS
T ss_pred EECCCCchHHHHHHHHHcCC
Confidence 78999999999999997544
No 317
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.49 E-value=5.5e-05 Score=47.58 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=17.2
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|.|++||||||+.+.|+ ..
T Consensus 170 l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EECSTTSSHHHHHHHHH-SC
T ss_pred EECCCCCCHHHHHHHHH-Hh
Confidence 78999999999999998 54
No 318
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.49 E-value=5.1e-05 Score=49.68 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=16.2
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
.|+|+|||||||++..++
T Consensus 182 ~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 182 ELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEEcCCCCChHHHHHHHH
Confidence 379999999999999876
No 319
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.49 E-value=5.2e-05 Score=43.08 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
.|.|+||+||||+.+.+..
T Consensus 7 ~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 7 ALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEECSTTSSHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 3789999999999999975
No 320
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.49 E-value=3.5e-05 Score=48.71 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=17.8
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++||||||+.+.|...
T Consensus 8 ~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 8 LLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEESSSSSCHHHHHHHHHS
T ss_pred EEEecCCCCHHHHHHHHHhh
Confidence 48999999999999999854
No 321
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.48 E-value=5.2e-05 Score=51.58 Aligned_cols=20 Identities=40% Similarity=0.810 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|+||+||||++..++..
T Consensus 208 ~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 208 VLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999988754
No 322
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.48 E-value=1.6e-05 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGL 23 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~ 23 (82)
+|.||||+|||++|+.+++..+-
T Consensus 331 LL~GppGtGKT~LAr~la~~~~r 353 (595)
T 3f9v_A 331 LIIGDPGTAKSQMLQFISRVAPR 353 (595)
T ss_dssp EEEESSCCTHHHHHHSSSTTCSC
T ss_pred EEECCCchHHHHHHHHHHHhCCC
Confidence 58999999999999999987653
No 323
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.48 E-value=0.0011 Score=44.62 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=42.5
Q ss_pred CeecCCCCCHHHHHHHHHH-------Hh--CCceeehH-----HHHHHHHh---h-C-------CCcCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK-------NF--GLTHLSAG-----DLLRREIA---S-N-------RKIVPSEVTISLIRKE 55 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~-------~~--~~~~i~~~-----~~~~~~~~---~-~-------~~~~~~~~~~~~l~~~ 55 (82)
.|+|++|+||||+|..++. .+ +...++.+ +++..... . + ....+.+...+.+...
T Consensus 151 ~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 230 (591)
T 1z6t_A 151 TIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRIL 230 (591)
T ss_dssp EEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHH
Confidence 3799999999999998863 23 23334432 22332211 0 0 1122334455566666
Q ss_pred HhcCC-CCeEEEeCCCCCHHHHH
Q 035937 56 IESSD-NHKFLINGFPRSEENRA 77 (82)
Q Consensus 56 i~~~~-~~~~iidg~p~~~~~~~ 77 (82)
+.... .-.+|+|++ .+..+.+
T Consensus 231 l~~~~~~~LLVLDdv-~~~~~l~ 252 (591)
T 1z6t_A 231 MLRKHPRSLLILDDV-WDSWVLK 252 (591)
T ss_dssp HHHTCTTCEEEEEEE-CCHHHHH
T ss_pred HccCCCCeEEEEeCC-CCHHHHH
Confidence 65532 457899998 4544443
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.46 E-value=6.3e-05 Score=41.99 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|++|+||||+.+.+....
T Consensus 5 ~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 5 VIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEECCTTSSHHHHHHHHHHCC
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999998643
No 325
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.46 E-value=4.3e-05 Score=51.40 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=18.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||+||||||+.+.|+...
T Consensus 264 ~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 264 IVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp EEEESTTSSHHHHHHHHGGGS
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999998554
No 326
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.46 E-value=6.5e-05 Score=42.17 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 9 ~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 9 VVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999753
No 327
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.44 E-value=6.7e-05 Score=48.52 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|+|||||||+.+.|+...
T Consensus 220 lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 220 FAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EECCTTSSHHHHHHHHHCCS
T ss_pred EECCCCccHHHHHHHHhccc
Confidence 78999999999999997433
No 328
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.43 E-value=6.6e-05 Score=51.43 Aligned_cols=17 Identities=41% Similarity=0.827 Sum_probs=13.2
Q ss_pred CeecCCCCCHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKI 17 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l 17 (82)
+|.||||+|||+++-.+
T Consensus 209 lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 209 IIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp EEECCTTSCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 58999999999754444
No 329
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.43 E-value=5e-05 Score=43.87 Aligned_cols=19 Identities=42% Similarity=0.688 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|.|++|+||||+.+.++.
T Consensus 6 ~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 6 MIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEESCTTSSHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4799999999999999975
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.43 E-value=7e-05 Score=41.73 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 7 ~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 7 VVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999754
No 331
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.43 E-value=7.7e-05 Score=45.25 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
++.|.+|+||||++..|+..
T Consensus 18 ~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 18 VFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHH
Confidence 47899999999999999854
No 332
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.42 E-value=7.2e-05 Score=50.51 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+|++||||||+.+.|+-.
T Consensus 52 LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 52 IVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 7899999999999999843
No 333
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.41 E-value=8.5e-05 Score=44.10 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.5
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|++||||||.+-.++.++
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHH
Confidence 479999999999998888776
No 334
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.41 E-value=9.3e-05 Score=47.40 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
.|+|+||+||||++..|+..+
T Consensus 83 ~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 83 GITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999998654
No 335
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.41 E-value=6.4e-05 Score=47.58 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.8
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.|+||||||++|..++..
T Consensus 111 ~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 111 EFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHhHHHHHHHHH
Confidence 47899999999999999864
No 336
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.41 E-value=8.2e-05 Score=41.57 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 7 ~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 7 VVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999998743
No 337
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.40 E-value=6.8e-05 Score=47.88 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.9
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.|+||||||++|..++..
T Consensus 126 ~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 126 EAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEECCTTCTHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999864
No 338
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.40 E-value=8.3e-05 Score=44.12 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.4
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|.+||||||++..++...
T Consensus 42 ~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 42 DFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEESTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999998764
No 339
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=7.8e-05 Score=42.83 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=17.3
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.++.
T Consensus 11 ~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 11 ALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEECSTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 3789999999999999985
No 340
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.40 E-value=6.1e-05 Score=47.29 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.5
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.|+|||||||+.+.|+.
T Consensus 174 l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp EECSTTSSHHHHHHHHST
T ss_pred EECCCCCcHHHHHHHhcc
Confidence 789999999999999964
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.39 E-value=0.0002 Score=53.98 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=41.2
Q ss_pred CeecCCCCCHHHHHHHHHHH-----hCCceeehHHHHHHHHhhC-C---------CcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKN-----FGLTHLSAGDLLRREIASN-R---------KIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~-----~~~~~i~~~~~~~~~~~~~-~---------~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|+|+||||||++|..++.. ....++++.+......... + .....+...+++....+....+.+|
T Consensus 38 lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~~LVV 117 (1706)
T 3cmw_A 38 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 117 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCCCEEE
Confidence 48999999999999998743 3477788765433332211 0 1112344445444433322367899
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||.+
T Consensus 118 IDSL 121 (1706)
T 3cmw_A 118 VDSV 121 (1706)
T ss_dssp ESCS
T ss_pred Ecch
Confidence 9964
No 342
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.39 E-value=8.6e-05 Score=43.78 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|++|+||||+.+.+....
T Consensus 16 ~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 16 IIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEECSTTSSHHHHHHHHHHSS
T ss_pred EEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999998643
No 343
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.39 E-value=0.00011 Score=46.79 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.4
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|++|+||||++..||..+
T Consensus 110 ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 110 LVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EESSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998543
No 344
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.39 E-value=2.7e-05 Score=47.42 Aligned_cols=20 Identities=45% Similarity=0.740 Sum_probs=17.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+--+
T Consensus 32 i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 68999999999999998544
No 345
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.38 E-value=7.5e-05 Score=48.12 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=16.5
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+||+||||||+...++
T Consensus 27 ~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 27 VVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 489999999999999887
No 346
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=7.3e-05 Score=47.06 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.|+||||||++|..++..
T Consensus 102 ~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 102 EFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEESTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999853
No 347
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.37 E-value=9.6e-05 Score=41.32 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 8 ~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 8 IMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999753
No 348
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.37 E-value=6.9e-05 Score=50.68 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+-.
T Consensus 30 LiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 30 VLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EECCTTSSHHHHHHHHTTS
T ss_pred EECCCCCcHHHHHHHHhcC
Confidence 7899999999999999853
No 349
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.37 E-value=9.2e-05 Score=42.75 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.8
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++||||||+.+.+...
T Consensus 52 ~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 52 IIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999864
No 350
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.37 E-value=8.8e-05 Score=41.94 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 8 ~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 8 VLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEECCTTSSHHHHHHHHHC
T ss_pred EEECCCCccHHHHHHHHhc
Confidence 4799999999999999974
No 351
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.36 E-value=7.4e-05 Score=50.08 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=15.3
Q ss_pred CeecCCCCCHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKI 17 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l 17 (82)
.|+|+|||||||+++.+
T Consensus 43 ~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 43 LVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEEESTTSSHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHH
Confidence 37999999999999984
No 352
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.36 E-value=0.00011 Score=47.16 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=18.9
Q ss_pred eecCCCCCHHHHHHHHHHHhC
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~ 22 (82)
|+|++||||||+.+.|+....
T Consensus 76 IiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 76 IFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEECTTSSHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhcCCC
Confidence 789999999999999997654
No 353
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.36 E-value=8.6e-05 Score=42.58 Aligned_cols=20 Identities=20% Similarity=0.518 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|+|+||+||||+.+.++..
T Consensus 8 ~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 8 VIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEESTTSSHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999854
No 354
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.36 E-value=0.00012 Score=46.64 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=21.3
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+|++|+||||+|..|.++ |...++-
T Consensus 148 l~~G~sG~GKSt~a~~l~~~-g~~lv~d 174 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIKR-GHRLVAD 174 (314)
T ss_dssp EEEESTTSSHHHHHHHHHHT-TCEEEES
T ss_pred EEEeCCCCCHHHHHHHHHhc-CCceecC
Confidence 48999999999999999764 6555543
No 355
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.36 E-value=8.5e-05 Score=46.92 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=21.3
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~ 28 (82)
+|.|+||+||||++..++... ...++++
T Consensus 72 li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 72 LIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 489999999999999988442 2445554
No 356
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.36 E-value=8.3e-05 Score=49.15 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+|++||||||+.+.|+..
T Consensus 47 LvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EECSTTSSSHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 7899999999999999743
No 357
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.35 E-value=9.5e-05 Score=48.63 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=16.8
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+|++||||||+.+.|+.
T Consensus 74 lvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEECTTSSHHHHHHHHHT
T ss_pred EECCCCCcHHHHHHHHhC
Confidence 789999999999999985
No 358
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.35 E-value=0.00011 Score=41.27 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 7 VLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999743
No 359
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.35 E-value=9.2e-05 Score=41.60 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 10 ~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 10 CLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999754
No 360
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.34 E-value=0.0001 Score=41.54 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.4
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+++|++|+||||+.+.+.
T Consensus 6 ~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 6 MLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 479999999999999986
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.34 E-value=0.00011 Score=41.75 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++||||||+.+.+...
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 12 IILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999998743
No 362
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.34 E-value=0.00011 Score=41.68 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 11 ~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 11 ILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4799999999999999974
No 363
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.34 E-value=0.0001 Score=41.38 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 7 ~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 7 LLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 4789999999999999974
No 364
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.33 E-value=0.00011 Score=49.31 Aligned_cols=20 Identities=45% Similarity=0.728 Sum_probs=17.6
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+--+
T Consensus 34 liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 34 LSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 78999999999999998543
No 365
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=0.0001 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 7 ~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 7 AVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEECCTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4789999999999999975
No 366
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.33 E-value=7.3e-05 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|+||+||||++..|+..+
T Consensus 103 ~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 103 LLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp EEECCSSSSTTHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999998654
No 367
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.32 E-value=0.00026 Score=53.41 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=42.4
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHhh--C--------CCcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAGDLLRREIAS--N--------RKIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~~~~~~~~~~--~--------~~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|.|+||+||||+|..++... ...+++..+...+.... + ....+-+.+.+.++..+.+..-+.+|
T Consensus 736 lI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~lVV 815 (1706)
T 3cmw_A 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 815 (1706)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCCEEE
Confidence 478999999999999997542 35677775544332221 1 11223444555555555555567889
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||..
T Consensus 816 IDsL 819 (1706)
T 3cmw_A 816 VDSV 819 (1706)
T ss_dssp ESCS
T ss_pred Eech
Confidence 9964
No 368
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.32 E-value=0.0001 Score=43.84 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|++||||||+...|.--+
T Consensus 27 ~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 27 LIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHh
Confidence 489999999999999987433
No 369
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.32 E-value=0.00012 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 10 ~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 10 VLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999844
No 370
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.32 E-value=0.00012 Score=41.00 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 7 ~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 7 VVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEECSTTSSHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999753
No 371
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.32 E-value=0.00013 Score=48.22 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.9
Q ss_pred eecCCCCCHHHHHHHHHHHhC
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~ 22 (82)
|+|++||||||+.+.|+....
T Consensus 162 IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhcccC
Confidence 789999999999999997664
No 372
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.32 E-value=0.00011 Score=41.64 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 10 ~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 10 VVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEECCTTSSHHHHHHHHHG
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 4789999999999999974
No 373
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00011 Score=50.38 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=17.1
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+||+||||||+.+.|+-.
T Consensus 108 LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 108 LVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCChHHHHHHHHhcC
Confidence 7899999999999999843
No 374
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.32 E-value=9.5e-05 Score=41.53 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=16.3
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+++|++|+||||+.+.+.
T Consensus 6 ~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 6 LLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEESTTSSHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHc
Confidence 478999999999999985
No 375
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.30 E-value=5e-05 Score=44.48 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=16.6
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
.|+|++||||||+.+.|+.
T Consensus 30 ~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 30 AFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEECTTSSHHHHHTTTCC
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 3789999999999998864
No 376
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.30 E-value=0.00013 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=18.4
Q ss_pred CeecCCCCCHHHHHHHHHHHhC
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~ 22 (82)
+|+|.+|+||||+.+.+...+.
T Consensus 18 ~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 18 VYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEECSTTSSHHHHHHHHHHTSC
T ss_pred EEECCCCCCHHHHHHHHHhhcc
Confidence 4789999999999988876543
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.29 E-value=0.00013 Score=40.83 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 10 ~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 10 VLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4789999999999999984
No 378
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.29 E-value=0.00013 Score=41.73 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 15 ~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 15 LALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4789999999999999985
No 379
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.29 E-value=0.00015 Score=40.64 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 4 ~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 4 LMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEECSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999743
No 380
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.29 E-value=0.00011 Score=49.88 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=17.8
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 374 LVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 78999999999999998554
No 381
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.28 E-value=0.00014 Score=41.87 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 25 ~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 25 VVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999854
No 382
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.28 E-value=0.00013 Score=49.23 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.8
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 317 i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 317 IVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 789999999999999984
No 383
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.27 E-value=0.00014 Score=41.58 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 8 ~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 8 VVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999853
No 384
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.27 E-value=0.00016 Score=46.15 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.2
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+|+||+||||+++.|+..
T Consensus 61 i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 61 VTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEECTTSCHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999854
No 385
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.27 E-value=0.00015 Score=41.06 Aligned_cols=20 Identities=20% Similarity=0.405 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 19 ~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 19 IIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999853
No 386
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.26 E-value=0.00014 Score=46.85 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++||||||+++.++..
T Consensus 39 ~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 39 TILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999988754
No 387
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.26 E-value=0.00015 Score=41.77 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.8
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.|...
T Consensus 11 ~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 11 VLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999864
No 388
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.26 E-value=0.00015 Score=40.80 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 11 ~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 11 LILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4799999999999999974
No 389
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.26 E-value=0.00014 Score=41.85 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 11 ~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 11 VVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999854
No 390
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.26 E-value=0.0001 Score=50.05 Aligned_cols=20 Identities=40% Similarity=0.621 Sum_probs=17.9
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 374 ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 374 LVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEECTTSSHHHHHHHHTTTT
T ss_pred EECCCCCCHHHHHHHHhhcc
Confidence 78999999999999998654
No 391
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.26 E-value=0.00014 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 13 ~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 13 VVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999754
No 392
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.26 E-value=0.00012 Score=42.21 Aligned_cols=20 Identities=20% Similarity=0.425 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 27 ~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 27 ALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999743
No 393
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.25 E-value=0.00012 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.|+|||||||+++.++..
T Consensus 285 ~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 285 LATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEECTTSSHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999843
No 394
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.25 E-value=0.00013 Score=41.41 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=16.8
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 13 ~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 13 LIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEECCTTSCHHHHHHHHCS
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4799999999999999863
No 395
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.25 E-value=0.00011 Score=49.62 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+||+||||||+.+.|+.
T Consensus 299 i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 299 ILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EECCTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 789999999999999984
No 396
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.25 E-value=0.00015 Score=47.88 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|.|+||+||||++..++.
T Consensus 207 iI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 207 IVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 4789999999999998874
No 397
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.25 E-value=0.00015 Score=49.74 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=16.8
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 387 i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 789999999999999984
No 398
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.25 E-value=0.00012 Score=50.25 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+||+||||||+.+.|+-
T Consensus 122 LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 122 IVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp EECCTTSSHHHHHHHHTT
T ss_pred EECCCCChHHHHHHHHhC
Confidence 789999999999999974
No 399
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.24 E-value=0.00013 Score=41.81 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 5 ~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 5 IFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEBTTSSHHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhCc
Confidence 47899999999999999753
No 400
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.24 E-value=0.00019 Score=45.00 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.2
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
++|++|+||||++..||..+
T Consensus 103 i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 67999999999999998543
No 401
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.24 E-value=0.00014 Score=41.17 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 18 ~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 18 VFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4789999999999999974
No 402
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.24 E-value=0.00015 Score=41.15 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 12 ~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 12 TIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEESCTTTTHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 4789999999999999974
No 403
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.24 E-value=0.00014 Score=46.33 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=16.1
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+||+||||||+...+.
T Consensus 27 ~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 27 LIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 489999999999999875
No 404
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.23 E-value=0.00018 Score=43.99 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=16.8
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
++.|+||+||||++-.++..
T Consensus 10 ~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 10 FLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEESSTTSSHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHH
Confidence 47899999999998888743
No 405
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.23 E-value=0.0012 Score=47.18 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
|+|+.|+||||+|+.++..
T Consensus 152 i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 152 IYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp EECSTTSSHHHHHHHHTCC
T ss_pred EEeCCCCCHHHHHHHHhcC
Confidence 7899999999999988754
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.23 E-value=0.00015 Score=41.45 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 22 ~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 22 VVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999854
No 407
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.23 E-value=0.00016 Score=41.38 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 14 ~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 14 LVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999743
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.23 E-value=0.00013 Score=45.80 Aligned_cols=18 Identities=33% Similarity=0.543 Sum_probs=16.2
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
.|+|++|+||||+.+.|+
T Consensus 22 ~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 22 MVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEETTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 378999999999999976
No 409
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.23 E-value=0.00017 Score=41.06 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 22 ~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 22 IMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhhC
Confidence 47899999999999999843
No 410
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.22 E-value=0.00017 Score=41.63 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 29 ~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 29 VLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHhc
Confidence 4789999999999999975
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.22 E-value=0.00016 Score=41.95 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=17.3
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
++.|++|+||||+.+++..
T Consensus 27 ~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 27 LFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4789999999999999985
No 412
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.22 E-value=0.00016 Score=49.43 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=16.0
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.||||+|||+++..+...
T Consensus 199 li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 47899999999987766543
No 413
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.21 E-value=0.00018 Score=40.88 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 16 ~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 16 VLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEECCTTSCHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999743
No 414
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.20 E-value=0.0002 Score=45.61 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=20.7
Q ss_pred CeecCCCCCHHHHHHHHHHHhCCceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNFGLTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~~~~~i~~ 28 (82)
+|+|++|+||||+|-.|.+ .|...++-
T Consensus 151 li~G~sG~GKStlal~l~~-~G~~lv~D 177 (312)
T 1knx_A 151 LLTGRSGIGKSECALDLIN-KNHLFVGD 177 (312)
T ss_dssp EEEESSSSSHHHHHHHHHT-TTCEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHH-cCCEEEeC
Confidence 5899999999999988864 45544443
No 415
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.20 E-value=0.00018 Score=44.30 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|.|+|||||||+.+.|...
T Consensus 7 ~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 7 ALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEECSSSSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999743
No 416
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.20 E-value=0.00038 Score=53.22 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=41.7
Q ss_pred CeecCCCCCHHHHHHHHHHHh-----CCceeehHHHHHHHHhh--C--------CCcCCHHHHHHHHHHHHhcCCCCeEE
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF-----GLTHLSAGDLLRREIAS--N--------RKIVPSEVTISLIRKEIESSDNHKFL 65 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~-----~~~~i~~~~~~~~~~~~--~--------~~~~~~~~~~~~l~~~i~~~~~~~~i 65 (82)
+|.|+||+||||+|..++... .+.+++...-..+.... + ....+.+.+.+.++..+.+..-+.+|
T Consensus 387 lI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIV 466 (2050)
T 3cmu_A 387 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 466 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 478999999999999998543 36677775433222111 1 12233344455555555454567889
Q ss_pred EeCC
Q 035937 66 INGF 69 (82)
Q Consensus 66 idg~ 69 (82)
||..
T Consensus 467 IDSL 470 (2050)
T 3cmu_A 467 VDSV 470 (2050)
T ss_dssp ESCG
T ss_pred ECCH
Confidence 9964
No 417
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00019 Score=40.76 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 14 ~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 14 MLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999743
No 418
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.20 E-value=0.00016 Score=41.58 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 27 ~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 27 AFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEBTTSSHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999754
No 419
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.19 E-value=0.00014 Score=45.79 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=17.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
++|++|+||||++..|+..+
T Consensus 103 i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 103 LVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp EECSSCSSTTHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 67999999999999998554
No 420
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.18 E-value=0.0002 Score=40.79 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 9 ~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 9 VVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4789999999999999974
No 421
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.18 E-value=0.00019 Score=49.08 Aligned_cols=20 Identities=45% Similarity=0.906 Sum_probs=16.3
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|+||+||||++..+...
T Consensus 168 vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 168 VISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEECCTTSTHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHH
Confidence 57999999999988776543
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0002 Score=49.18 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.||+||||||+.+.|+-
T Consensus 383 iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 383 MMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EESCTTSSHHHHHHHHHT
T ss_pred EECCCCCcHHHHHHHHhc
Confidence 789999999999999984
No 423
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.17 E-value=0.00021 Score=41.15 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 20 ~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 20 LLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999853
No 424
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.16 E-value=0.00021 Score=41.33 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 24 ~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 24 GIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEECCTTSCHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47999999999999888753
No 425
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.16 E-value=0.00021 Score=48.10 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=17.6
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+|+|||||||++..|+..+
T Consensus 106 ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998543
No 426
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.16 E-value=0.00021 Score=41.56 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 12 ~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 12 IILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHHcC
Confidence 47899999999999999754
No 427
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.16 E-value=0.00022 Score=41.44 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++||||||+.+.+...
T Consensus 18 ~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 18 IMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999743
No 428
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.16 E-value=0.00019 Score=43.18 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.|...
T Consensus 33 ~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 33 VLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEECCTTSSHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHcCC
Confidence 47999999999999999743
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.16 E-value=0.00022 Score=41.22 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=18.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+|.+|+||||+.+.+....
T Consensus 27 ~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 27 LIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEESTTSSHHHHHHHHHHHT
T ss_pred EEECCCCcCHHHHHHHHhcCC
Confidence 479999999999999998543
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.16 E-value=0.00022 Score=41.07 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 26 ~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 26 LLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999753
No 431
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.14 E-value=0.00023 Score=44.63 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=16.7
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+|+||+||||+.+.|..
T Consensus 13 IvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 13 IVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EECSSSSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHC
Confidence 789999999999999974
No 432
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.14 E-value=0.0002 Score=40.80 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 10 ~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 10 AILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 4789999999999999984
No 433
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00024 Score=41.24 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 32 ~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 32 AIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999754
No 434
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.13 E-value=0.00012 Score=49.83 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=17.8
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|.||+||||||+.+.|+.-+
T Consensus 375 ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 375 LVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EECCTTSSSTHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 78999999999999998554
No 435
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.13 E-value=0.00025 Score=40.34 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 12 ~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 12 VTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999753
No 436
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.13 E-value=0.00025 Score=40.79 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 19 ~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 19 LIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999753
No 437
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.13 E-value=0.00019 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 20 ~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 20 LLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEESTTSSHHHHHHHHCCS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999754
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.13 E-value=0.00023 Score=41.44 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 12 ~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 12 LIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEECSTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4789999999999999974
No 439
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.12 E-value=0.00022 Score=45.74 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=19.2
Q ss_pred eecCCCCCHHHHHHHHHHHhC
Q 035937 2 LSGGPGSGKGTQCTKIVKNFG 22 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~~ 22 (82)
|-|+-||||||+++.|++.++
T Consensus 12 ~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 12 LDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EECSTTSSHHHHHHHHHSGGG
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 679999999999999998875
No 440
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.12 E-value=0.0045 Score=45.50 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=16.4
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.|+.|+||||+|+.++.
T Consensus 155 IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 155 IDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp ECCSTTSSHHHHHHHHHH
T ss_pred EEcCCCccHHHHHHHHHH
Confidence 789999999999998874
No 441
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.11 E-value=0.00024 Score=41.15 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 27 ~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 27 CLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEECTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999743
No 442
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.11 E-value=0.0002 Score=49.04 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+|++||||||+.+.|+.
T Consensus 50 IvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 50 VIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp CCCCTTSCHHHHHHHHHS
T ss_pred EECCCCChHHHHHHHHhC
Confidence 789999999999999974
No 443
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.11 E-value=0.00026 Score=40.89 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 25 ~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 25 IIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHhc
Confidence 4789999999999999974
No 444
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.11 E-value=0.00025 Score=41.39 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 28 ~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 28 VILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999854
No 445
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.11 E-value=0.00012 Score=49.88 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.8
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 386 ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 386 LVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EECCTTSSTTHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCc
Confidence 78999999999999998554
No 446
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.11 E-value=0.00026 Score=40.77 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 24 ~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 24 IVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4789999999999999974
No 447
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.11 E-value=0.0002 Score=47.11 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
.|+|++||||||+.+.|+..
T Consensus 35 ~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEECCTTSSHHHHHHHHTTC
T ss_pred EEECCCCCcHHHHHHHHhCC
Confidence 37899999999999999743
No 448
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.11 E-value=0.00023 Score=40.84 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 22 ~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 22 LMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4789999999999999974
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.11 E-value=0.00027 Score=40.81 Aligned_cols=19 Identities=37% Similarity=0.251 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 26 ~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 26 TLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHc
Confidence 4799999999999999984
No 450
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.11 E-value=0.00026 Score=40.91 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 25 ~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 25 AILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEECCTTSSHHHHHHHHHHS
T ss_pred EEECCCCCcHHHHHHHHHhC
Confidence 47999999999999998753
No 451
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.09 E-value=6.3e-05 Score=47.69 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=16.4
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+|+|||||||+.+.|+.
T Consensus 178 lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp EEESHHHHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHhcc
Confidence 789999999999999863
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.09 E-value=0.00026 Score=41.79 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 32 ~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 32 VVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999854
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00026 Score=40.89 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 12 ~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 12 VVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHc
Confidence 4789999999999999975
No 454
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.09 E-value=0.00026 Score=41.34 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 12 ~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 12 LLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4789999999999999974
No 455
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.09 E-value=0.00028 Score=41.10 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.4
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|++|+||||+.+.+...
T Consensus 32 ~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 32 VLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEESSTTSSHHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHhC
Confidence 47899999999999999743
No 456
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.09 E-value=0.00014 Score=41.56 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=16.4
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+++|++|+||||+.+.+.
T Consensus 22 ~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 22 LILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEETTSSHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 478999999999999987
No 457
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.09 E-value=0.00025 Score=46.64 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeecCCCCCHHHHHHHHHHH----hC--Cceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKN----FG--LTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~----~~--~~~i~~ 28 (82)
+|.|+||+|||+++..++.. .+ ..++|+
T Consensus 204 ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 204 IIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 47999999999999988743 23 455655
No 458
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.09 E-value=0.00029 Score=40.77 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|.+|+||||+.+.+...
T Consensus 27 ~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 27 VVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999854
No 459
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.08 E-value=9.1e-05 Score=50.25 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 372 ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 372 FVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCChHHHHHHHHhcCC
Confidence 78999999999999887544
No 460
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.07 E-value=0.0003 Score=41.29 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 11 ~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 11 LFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEECSTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999853
No 461
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.07 E-value=0.00028 Score=41.54 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 30 ~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 30 VLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 4799999999999999874
No 462
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.07 E-value=0.00019 Score=40.86 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
++.|.+|+||||+.+.+...
T Consensus 11 ~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 11 GVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEECCGGGCHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999853
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.07 E-value=0.00019 Score=41.96 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
++.|++|+||||+.+++..
T Consensus 29 ~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 29 VFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEETTSSHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 3789999999999999963
No 464
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.06 E-value=0.00027 Score=40.63 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|.+|+||||+.+.+..
T Consensus 20 ~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 20 IIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEESTTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4799999999999999984
No 465
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.06 E-value=0.00036 Score=40.64 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|.|.||+||||+.+++..
T Consensus 10 ~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 10 VLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4799999999999999974
No 466
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.05 E-value=0.00032 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 24 ~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 24 LLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4789999999999999974
No 467
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.05 E-value=0.00025 Score=49.87 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
.|+||+||||||+.+.++-
T Consensus 580 ~I~GpNGsGKSTlLr~iag 598 (765)
T 1ewq_A 580 LITGPNMAGKSTFLRQTAL 598 (765)
T ss_dssp EEESCSSSSHHHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHHh
Confidence 3899999999999999873
No 468
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.04 E-value=0.00031 Score=50.59 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=16.8
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|+|++||||||+.+.|+.
T Consensus 466 LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 466 ICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 789999999999999983
No 469
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.03 E-value=0.00031 Score=49.53 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=16.0
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|.||||+||||++..+...
T Consensus 375 lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 375 LIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEECCTTSCHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHH
Confidence 48999999999877766543
No 470
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.03 E-value=0.00027 Score=45.65 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|.|.+||||||+++++.--+
T Consensus 37 lllG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 37 LLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHh
Confidence 588999999999999985333
No 471
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.02 E-value=0.0003 Score=41.07 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=16.5
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+|.+|+||||+.+.+.
T Consensus 29 ~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 29 LVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEESTTSSHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHH
Confidence 478999999999999987
No 472
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.02 E-value=0.00038 Score=42.14 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.1
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+++|++||||||.+-.++.++
T Consensus 32 vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHH
Confidence 479999999999998888665
No 473
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.02 E-value=0.0002 Score=45.26 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=16.7
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+|++||||||+.+.|.
T Consensus 28 ~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 28 AIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 489999999999999997
No 474
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.02 E-value=0.00014 Score=49.47 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.7
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
|+||+||||||+.+.|+.-+
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECSSSSSHHHHHHTTTTSS
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 78999999999999997554
No 475
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.02 E-value=0.00028 Score=49.77 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
.|+||+||||||+.+.++-
T Consensus 611 ~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 611 IITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCChHHHHHHHHH
Confidence 4899999999999999873
No 476
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.02 E-value=0.00023 Score=41.58 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=16.4
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+|.+|+||||+.+.+.
T Consensus 27 ~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 27 MLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEECSTTSSHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 479999999999999985
No 477
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.01 E-value=0.0003 Score=42.78 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+||||||+.+.|...
T Consensus 26 ~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 26 ILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEECTTSCHHHHHHHHHTS
T ss_pred EEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999743
No 478
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.01 E-value=0.00036 Score=46.05 Aligned_cols=20 Identities=40% Similarity=0.564 Sum_probs=17.5
Q ss_pred eecCCCCCHHHHHHHHHHHh
Q 035937 2 LSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~~ 21 (82)
++|++||||||++..|+..+
T Consensus 103 i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 103 LVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 67999999999999998554
No 479
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.00 E-value=0.00032 Score=45.32 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=16.5
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+||+||||||+.+.++
T Consensus 30 ~i~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 30 GIYGENGAGKTNLLEAAY 47 (359)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCChhHHHHHHH
Confidence 479999999999999986
No 480
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.00 E-value=0.0003 Score=40.89 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=16.8
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|++|+||||+.+.+..
T Consensus 33 ~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 33 LMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEESTTSSHHHHHHHHCS
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4789999999999999963
No 481
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00035 Score=40.96 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|.+|+||||+.+.+..
T Consensus 29 ~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 29 VVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHhc
Confidence 4789999999999999975
No 482
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.99 E-value=0.00036 Score=40.48 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 24 ~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 24 VLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEECSTTSSHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4789999999999999873
No 483
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.99 E-value=0.00037 Score=44.75 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=21.4
Q ss_pred CeecCCCCCHHHHHHHHHHH---hC--Cceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKN---FG--LTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~---~~--~~~i~~ 28 (82)
+|.|+||+||||++..++.. .+ ..++|+
T Consensus 50 iIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 50 IIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 47899999999999998854 23 445655
No 484
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.00034 Score=40.57 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=16.4
Q ss_pred CeecCCCCCHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIV 18 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~ 18 (82)
+|+|.+|+||||+.+.+.
T Consensus 30 ~vvG~~~~GKSsLi~~l~ 47 (192)
T 2il1_A 30 IIIGSRGVGKTSLMERFT 47 (192)
T ss_dssp EEECSTTSSHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHh
Confidence 478999999999999986
No 485
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.98 E-value=0.00036 Score=41.02 Aligned_cols=19 Identities=26% Similarity=0.351 Sum_probs=17.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 29 ~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 29 LALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEESCTTSSHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHhc
Confidence 4789999999999999974
No 486
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.98 E-value=0.00033 Score=45.77 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.9
Q ss_pred CeecCCCCCHHHHHHHHHHHh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF 21 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~ 21 (82)
+|+||+||||||+.+.++--.
T Consensus 30 ~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 30 SIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEECSTTSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHhhh
Confidence 479999999999999997544
No 487
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.98 E-value=0.00028 Score=40.43 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=17.2
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|.+|+||||+.+.+..
T Consensus 25 ~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 25 IIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEETTSSHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4789999999999999974
No 488
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.97 E-value=0.00017 Score=41.25 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=7.1
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|++|+||||+.+.+..
T Consensus 12 ~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 12 LLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEECCCCC-----------
T ss_pred EEECCCCCCHHHHHHHHHh
Confidence 4789999999999998863
No 489
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.96 E-value=0.0004 Score=40.53 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=17.6
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 29 ~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 29 VIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999853
No 490
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.96 E-value=0.0004 Score=40.07 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=17.7
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+++|++|+||||+.+.+...
T Consensus 22 ~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 22 VVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEECTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999854
No 491
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.96 E-value=0.00037 Score=41.17 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|.+|+||||+.+.+..
T Consensus 38 ~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 38 VLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEECTTSSHHHHHHHHHC
T ss_pred EEECcCCCCHHHHHHHHHc
Confidence 4789999999999999974
No 492
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.95 E-value=0.00041 Score=40.60 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 33 ~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 33 VLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEECTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHhh
Confidence 4789999999999999974
No 493
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.95 E-value=0.00037 Score=40.19 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 21 ~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 21 VMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEECCTTSCHHHHHHHHSC
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 4799999999999999873
No 494
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.94 E-value=0.00045 Score=45.63 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.6
Q ss_pred eecCCCCCHHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~~ 20 (82)
++|++|+||||++..||..
T Consensus 105 ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 105 MAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 6799999999999999843
No 495
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.93 E-value=0.00044 Score=40.51 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.5
Q ss_pred CeecCCCCCHHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVKN 20 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~ 20 (82)
+|+|.+|+||||+.+.+...
T Consensus 13 ~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 13 VTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEESTTSSHHHHHHHHHHS
T ss_pred EEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999843
No 496
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.93 E-value=0.00044 Score=40.54 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+++|.+|+||||+.+.+..
T Consensus 34 ~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 34 VVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECcCCCCHHHHHHHHHh
Confidence 4789999999999999874
No 497
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.93 E-value=0.00041 Score=45.86 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred CeecCCCCCHHHHHHHHHHHh---C--Cceeeh
Q 035937 1 MLSGGPGSGKGTQCTKIVKNF---G--LTHLSA 28 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~~~---~--~~~i~~ 28 (82)
+|.|+||+||||++..++... | ..++|+
T Consensus 201 iIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 201 LIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 488999999999999887432 3 455555
No 498
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.93 E-value=0.00042 Score=42.20 Aligned_cols=19 Identities=32% Similarity=0.580 Sum_probs=16.9
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.||+||||+.+.|..
T Consensus 25 ~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 25 ILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEESSTTSSHHHHHHHHHT
T ss_pred EEECCCCCcHHHHHHHHhC
Confidence 4799999999999999874
No 499
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.93 E-value=0.0004 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=17.0
Q ss_pred CeecCCCCCHHHHHHHHHH
Q 035937 1 MLSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 1 ~i~G~pgsGKtt~a~~l~~ 19 (82)
+|+|.+|+||||+.+.+..
T Consensus 33 ~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 33 ILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEECSTTSSHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHhC
Confidence 4799999999999999974
No 500
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.93 E-value=0.00047 Score=45.06 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=17.0
Q ss_pred eecCCCCCHHHHHHHHHH
Q 035937 2 LSGGPGSGKGTQCTKIVK 19 (82)
Q Consensus 2 i~G~pgsGKtt~a~~l~~ 19 (82)
|.|+|||||||+.+.|..
T Consensus 25 iVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 25 IVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEECSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHC
Confidence 789999999999999986
Done!