Query 035938
Match_columns 133
No_of_seqs 113 out of 551
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d7q_A Translation initiation 100.0 1.3E-46 4.4E-51 285.3 12.7 128 2-133 1-143 (143)
2 2oqk_A Putative translation in 100.0 8.1E-39 2.8E-43 234.5 8.3 108 1-112 1-117 (117)
3 2dgy_A MGC11102 protein; EIF-1 100.0 1.8E-34 6E-39 210.6 9.2 91 24-114 3-103 (111)
4 1jt8_A EIF-1A, probable transl 100.0 4E-32 1.4E-36 195.7 2.4 81 25-105 7-99 (102)
5 3i4o_A Translation initiation 99.8 5.7E-20 1.9E-24 127.0 5.3 57 35-91 13-79 (79)
6 1ah9_A IF1, initiation factor 99.7 4.5E-18 1.5E-22 113.9 3.8 56 36-91 6-71 (71)
7 1hr0_W Translation initiation 99.7 2.1E-18 7.1E-23 115.8 -1.0 55 36-90 7-71 (71)
8 2yv5_A YJEQ protein; hydrolase 92.8 0.47 1.6E-05 37.7 8.1 40 38-78 7-56 (302)
9 2rcn_A Probable GTPase ENGC; Y 92.0 0.41 1.4E-05 39.9 7.1 52 37-91 47-110 (358)
10 1t9h_A YLOQ, probable GTPase E 91.6 0.49 1.7E-05 38.4 7.0 40 49-90 33-73 (307)
11 2k52_A Uncharacterized protein 89.5 0.89 3E-05 29.4 5.5 57 36-92 7-72 (80)
12 2wfw_A ARC; ATP-binding protei 74.2 4 0.00014 30.8 4.4 57 37-98 68-151 (153)
13 2khi_A 30S ribosomal protein S 69.3 9.9 0.00034 26.0 5.3 56 36-91 32-101 (115)
14 3v2d_Y 50S ribosomal protein L 65.3 3.5 0.00012 29.3 2.3 35 60-94 1-35 (110)
15 3d3r_A Hydrogenase assembly ch 61.8 7.8 0.00027 27.3 3.5 54 39-99 27-86 (103)
16 2ot2_A Hydrogenase isoenzymes 55.2 13 0.00046 25.3 3.8 52 38-98 5-67 (90)
17 1vq8_T 50S ribosomal protein L 54.0 10 0.00034 27.4 3.0 33 62-94 39-71 (120)
18 3u5e_Y L33, YL33, 60S ribosoma 52.0 11 0.00039 27.4 3.1 40 54-93 33-77 (127)
19 1kl9_A Eukaryotic translation 51.0 45 0.0015 25.0 6.4 59 33-91 13-87 (182)
20 3j21_U 50S ribosomal protein L 50.8 9.7 0.00033 27.4 2.6 41 53-93 28-73 (121)
21 3tzu_A GCVH, glycine cleavage 49.0 2.9 9.9E-05 30.7 -0.5 39 54-92 8-57 (137)
22 4a17_S RPL26, 60S ribosomal pr 48.6 13 0.00046 27.3 3.0 40 54-93 32-76 (135)
23 3iz5_Y 60S ribosomal protein L 48.5 13 0.00044 27.9 3.0 40 54-93 32-76 (150)
24 2a19_A EIF-2- alpha, eukaryoti 47.4 49 0.0017 24.5 6.1 60 32-91 12-87 (175)
25 2k4k_A GSP13, general stress p 43.4 73 0.0025 22.1 6.3 59 34-92 6-78 (130)
26 2nn6_G Exosome complex exonucl 43.0 27 0.00093 28.3 4.3 49 31-79 123-184 (289)
27 2zkr_t 60S ribosomal protein L 42.5 13 0.00045 27.5 2.2 31 63-93 46-77 (145)
28 3m9b_A Proteasome-associated A 41.2 45 0.0015 26.8 5.3 41 38-78 160-226 (251)
29 2zjr_R 50S ribosomal protein L 39.2 13 0.00046 26.3 1.7 33 62-94 12-44 (115)
30 2z1c_A Hydrogenase expression/ 39.1 23 0.0008 23.3 2.8 50 40-98 7-61 (75)
31 3h43_A Proteasome-activating n 36.6 87 0.003 20.6 5.4 42 34-76 16-66 (85)
32 1luz_A Protein K3, protein K2; 36.2 28 0.00096 22.8 2.9 59 29-90 5-81 (88)
33 2je6_I RRP4, exosome complex R 35.5 66 0.0023 25.2 5.4 68 32-99 71-170 (251)
34 2khj_A 30S ribosomal protein S 32.9 61 0.0021 21.6 4.3 59 33-91 29-101 (109)
35 3mxu_A Glycine cleavage system 32.2 8.4 0.00029 28.5 -0.3 30 63-92 31-62 (143)
36 2ja9_A Exosome complex exonucl 31.5 55 0.0019 24.4 4.2 70 32-101 4-108 (175)
37 3klr_A Glycine cleavage system 31.0 9.1 0.00031 27.5 -0.3 30 63-92 9-40 (125)
38 2l66_A SSO7C4, transcriptional 29.5 10 0.00036 22.7 -0.2 24 55-78 15-38 (53)
39 2wg5_A General control protein 29.2 1E+02 0.0035 21.1 5.0 44 34-78 35-87 (109)
40 2nn6_I 3'-5' exoribonuclease C 28.7 1E+02 0.0035 23.4 5.3 56 32-87 78-157 (209)
41 2hnf_A Repressor protein CI101 28.2 15 0.00051 25.4 0.4 39 52-91 45-88 (133)
42 1kca_A Repressor protein CI; g 27.8 20 0.00068 24.1 1.0 26 65-91 32-57 (109)
43 1yfb_A Transition state regula 26.7 14 0.00047 23.2 0.0 24 54-77 24-47 (59)
44 1b12_A Signal peptidase I; ser 26.5 20 0.00067 27.6 0.9 11 66-76 50-60 (248)
45 4dov_A ORC1, origin recognitio 26.3 62 0.0021 24.4 3.6 29 63-91 36-65 (163)
46 1umu_A UMUD'; induced mutagene 26.0 20 0.00067 24.0 0.7 21 66-87 42-62 (116)
47 3jsy_A Acidic ribosomal protei 25.9 49 0.0017 25.3 3.1 52 52-114 137-189 (213)
48 2ba0_A Archeal exosome RNA bin 25.4 89 0.003 24.0 4.5 68 32-99 54-151 (229)
49 3r8s_U 50S ribosomal protein L 25.3 47 0.0016 23.0 2.6 28 65-92 3-30 (102)
50 3aev_A Translation initiation 24.1 1.7E+02 0.0059 23.1 6.1 60 32-91 8-83 (275)
51 3hgb_A Glycine cleavage system 23.8 12 0.00041 28.0 -0.8 30 63-92 35-67 (155)
52 3bdn_A Lambda repressor; repre 23.5 25 0.00085 25.8 0.9 27 65-92 159-185 (236)
53 2glw_A PHS018, 92AA long hypot 22.8 16 0.00054 24.8 -0.3 26 54-79 62-87 (92)
54 3m7n_A Putative uncharacterize 22.7 1.1E+02 0.0037 22.5 4.3 47 31-78 54-124 (179)
55 2id0_A Exoribonuclease 2; RNAs 22.6 2.6E+02 0.0087 24.6 7.4 44 67-110 123-176 (644)
56 3k2z_A LEXA repressor; winged 22.3 32 0.0011 25.1 1.3 26 65-91 123-148 (196)
57 3j21_k Acidic ribosomal protei 21.6 65 0.0022 26.4 3.2 52 52-114 141-193 (339)
58 2nn6_H Exosome complex exonucl 21.6 60 0.0021 26.4 2.9 48 32-79 92-163 (308)
59 3u5c_c S33, YS27, 40S ribosoma 20.9 1.6E+02 0.0053 19.2 4.3 14 66-79 48-61 (67)
60 3o27_A Putative uncharacterize 20.7 11 0.00038 24.9 -1.3 38 52-92 25-62 (68)
61 2kke_A Uncharacterized protein 20.5 66 0.0023 19.7 2.3 22 83-106 13-34 (53)
No 1
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=100.00 E-value=1.3e-46 Score=285.30 Aligned_cols=128 Identities=57% Similarity=0.882 Sum_probs=120.1
Q ss_pred CCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEE
Q 035938 2 ANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDII 72 (133)
Q Consensus 2 ~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~V 72 (133)
|+||||||| |+||+|+ .++++.+++++|+++|++|+|+++|||++| +|||||||||++|||++||+|
T Consensus 1 p~~~gkggk---~~~r~K~-~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~V 76 (143)
T 1d7q_A 1 PKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 76 (143)
T ss_dssp CCCCCSSSS---SSCCCCC-CSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEE
T ss_pred CCCCCCCCc---ccccccc-cchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEE
Confidence 899999999 9999998 887888999999999999999999999998 999999999999999999999
Q ss_pred EEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc-ccccCCcceeec-----cCCCCCC
Q 035938 73 LVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL-LLILMMTPMLFQ-----DNDIDKI 133 (133)
Q Consensus 73 lV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~-~~~~~~~~~~f~-----~~did~i 133 (133)
+|+||||+++||+|+|||+++|+++|+++|+||++|.+|+.+ |+++++++++|+ ++|||+|
T Consensus 77 lVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 143 (143)
T 1d7q_A 77 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI 143 (143)
T ss_dssp EEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCCCCCCCCCCCSCSSCCSCSCC
T ss_pred EEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCccccccCCCCccceeccCccchhccccC
Confidence 999999999999999999999999999999999999999988 766677779992 2489987
No 2
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.1e-39 Score=234.53 Aligned_cols=108 Identities=61% Similarity=1.014 Sum_probs=83.2
Q ss_pred CCCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCE
Q 035938 1 MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDI 71 (133)
Q Consensus 1 m~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~ 71 (133)
||+||||||| |++|+|+ .++++.+++++|+++|++|+|++++||++| ++||||||||++|||.+||+
T Consensus 1 ~~~~~~~g~k---~~~r~k~-~~~~~~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~ 76 (117)
T 2oqk_A 1 MPKNKGKGGK---NRRRGKN-DSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDI 76 (117)
T ss_dssp -------------------------CCCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCE
T ss_pred CCCCCCCCCC---ccccccc-ccchhhhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCE
Confidence 9999999999 9999998 777888999999999999999999999887 89999999999999999999
Q ss_pred EEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccc
Q 035938 72 ILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112 (133)
Q Consensus 72 VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e 112 (133)
|+|++|+|++++|+|+|+|.++|+++|+++|+||++|.+||
T Consensus 77 V~ve~~~~~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~~ 117 (117)
T 2oqk_A 77 VLVSLRDFQDSKGDIILKYTPDEARALKSKGEIPETTKINE 117 (117)
T ss_dssp EEEEECTTCTTEEEEEEECCHHHHHHHHHTTSSCTTCCC--
T ss_pred EEEEEEcCCCCeEEEEEEechHHHHHHHHcCCCCcccCccC
Confidence 99999999999999999999999999999999999999875
No 3
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=210.58 Aligned_cols=91 Identities=23% Similarity=0.278 Sum_probs=85.2
Q ss_pred cccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCC-CCeEEEEEEcCHh
Q 035938 24 EDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQ-DDKADVILINTPD 93 (133)
Q Consensus 24 ~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~-~~KgdIv~ry~~d 93 (133)
..+.+++++|++||++|+|+++|||++| +|||||||||++|||++||+|+|+||+|| ++||+|+|||+++
T Consensus 3 ~~~l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~ 82 (111)
T 2dgy_A 3 SGSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD 82 (111)
T ss_dssp CCCCCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred hhhhccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence 3467889999999999999999999998 99999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHcCCCCccccccccc
Q 035938 94 EAKRLKNIGELPDGTRLNEGL 114 (133)
Q Consensus 94 qik~L~k~g~~P~~f~~~e~~ 114 (133)
||++|+++|+||++|..++..
T Consensus 83 qvk~L~k~g~wP~~F~~~~~~ 103 (111)
T 2dgy_A 83 HVRSLQKEGFWPEAFSEVAEK 103 (111)
T ss_dssp HHHHHHHHTCSCHHHHHHHTT
T ss_pred HHHHHHHcCCCChHHhhcccc
Confidence 999999999999999764433
No 4
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.97 E-value=4e-32 Score=195.66 Aligned_cols=81 Identities=30% Similarity=0.454 Sum_probs=77.3
Q ss_pred ccceeeeccC--CCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCC-CCeEEEEEEcCH
Q 035938 25 DQKRELIIKE--EGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQ-DDKADVILINTP 92 (133)
Q Consensus 25 ~~~~el~~p~--e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~-~~KgdIv~ry~~ 92 (133)
+..+++++|+ ++|++|+|+++|||++| +|||||||||++|||++||+|+|++|||| ++||+|+|||++
T Consensus 7 ~~~~~~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~ 86 (102)
T 1jt8_A 7 EQQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTK 86 (102)
T ss_dssp CCCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred CcceecccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence 4567788877 99999999999999998 99999999999999999999999999999 889999999999
Q ss_pred hHHHHHHHcCCCC
Q 035938 93 DEAKRLKNIGELP 105 (133)
Q Consensus 93 dqik~L~k~g~~P 105 (133)
+|+++|+++|+||
T Consensus 87 de~~~L~k~g~~p 99 (102)
T 1jt8_A 87 TQVEWLKRKGYLD 99 (102)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999999
No 5
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=99.79 E-value=5.7e-20 Score=126.98 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 35 EGQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 35 e~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
-.|+.|+|+++|||+.| ++|||+||||+ +|||.+||.|+|++||||++||+|+|||.
T Consensus 13 ~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 13 AIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp CSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred eEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence 36899999999999887 99999999999 99999999999999999999999999984
No 6
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=99.71 E-value=4.5e-18 Score=113.93 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=52.1
Q ss_pred CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
.++.|+|++++||++| ++|++|||||+ .+||.+||+|+|++++|++++|+|+|||.
T Consensus 6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~ 71 (71)
T 1ah9_A 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence 4678999999998887 89999999998 59999999999999999999999999985
No 7
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=99.67 E-value=2.1e-18 Score=115.83 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=52.0
Q ss_pred CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938 36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILIN 90 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry 90 (133)
.++.|+|++++||++| ++|++|||||+ ++||.+||+|+|+++||++++|+|+|||
T Consensus 7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~ 71 (71)
T 1hr0_W 7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK 71 (71)
T ss_dssp CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence 6789999999998876 89999999997 9999999999999999999999999997
No 8
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.81 E-value=0.47 Score=37.70 Aligned_cols=40 Identities=15% Similarity=-0.072 Sum_probs=31.1
Q ss_pred EEEEEEEecCCce---------EEEEEeccccce-eeEeecCCEEEEEeee
Q 035938 38 EYAEVLRMLGNGR---------LRLHWRHQAMHK-RVWIAAGDIILVGFRI 78 (133)
Q Consensus 38 ~~g~V~~~lGn~~---------~~la~IpGKmrk-riWI~~GD~VlV~~~~ 78 (133)
..|+|++..++-. .+.|+++|+||+ .. ...||.|.+++++
T Consensus 7 ~~g~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~ 56 (302)
T 2yv5_A 7 KRGLVVDREAQMIGVYLFEDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD 56 (302)
T ss_dssp EEEEEEEEETTEEEEEETTTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE
T ss_pred eeEEEEEeeCCeEEEEEecCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc
Confidence 4566666666544 478999999997 45 8899999999876
No 9
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.01 E-value=0.41 Score=39.86 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=37.4
Q ss_pred eEEEEEEEecCCceE--------EEEEeccccceeeEeecCCEEEEEeeeCCC----CeEEEEEEcC
Q 035938 37 QEYAEVLRMLGNGRL--------RLHWRHQAMHKRVWIAAGDIILVGFRIYQD----DKADVILINT 91 (133)
Q Consensus 37 e~~g~V~~~lGn~~~--------~la~IpGKmrkriWI~~GD~VlV~~~~~~~----~KgdIv~ry~ 91 (133)
.+.|+|++..|+-.. +.|+++|+|+. +..||+|.+++.+.+. .+|.|+.++-
T Consensus 47 ~~~g~Vi~~~~~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~ 110 (358)
T 2rcn_A 47 PAEGIVISRFGMHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHE 110 (358)
T ss_dssp CEEEEEEEEETTEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECC
T ss_pred cceEEEEEEECCEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeC
Confidence 368999998886443 68999999986 7899999998654221 1377776664
No 10
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=91.64 E-value=0.49 Score=38.45 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=30.5
Q ss_pred ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938 49 GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILIN 90 (133)
Q Consensus 49 ~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry 90 (133)
+..+.|+++|+||+ ..-...||+|.+++.+ ...|.|..++
T Consensus 33 ~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~ 73 (307)
T 1t9h_A 33 DKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIK 73 (307)
T ss_dssp CEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEEC
T ss_pred CcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEc
Confidence 34578999999997 5677899999998643 3467777665
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=89.49 E-value=0.89 Score=29.40 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=41.3
Q ss_pred CeEEEEEEEecCCceE--------EEEEeccccceee-EeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938 36 GQEYAEVLRMLGNGRL--------RLHWRHQAMHKRV-WIAAGDIILVGFRIYQDDKADVILINTP 92 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~--------~la~IpGKmrkri-WI~~GD~VlV~~~~~~~~KgdIv~ry~~ 92 (133)
..+.|+|+.+...+.| -|+|++.=...++ .++.||.|.|.....+..++.|...+.+
T Consensus 7 ~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~ 72 (80)
T 2k52_A 7 KFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP 72 (80)
T ss_dssp CEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred CEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence 4578999999888877 4445543222222 5889999999999988888888776643
No 12
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=74.16 E-value=4 Score=30.77 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=34.9
Q ss_pred eEEEEEEEecCC-ceE---------EEEEecccccee-e----------------EeecCCEEEEEeeeCCCCeEEEEEE
Q 035938 37 QEYAEVLRMLGN-GRL---------RLHWRHQAMHKR-V----------------WIAAGDIILVGFRIYQDDKADVILI 89 (133)
Q Consensus 37 e~~g~V~~~lGn-~~~---------~la~IpGKmrkr-i----------------WI~~GD~VlV~~~~~~~~KgdIv~r 89 (133)
-.++.|.++|+. ++. +++++++.+... + -+++||.|+|+++ -|-..-+
T Consensus 68 Gev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~r-----ag~A~E~ 142 (153)
T 2wfw_A 68 GEISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTK-----AGYAFER 142 (153)
T ss_dssp EEEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETT-----TTEEEEE
T ss_pred cCEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCC-----CceEEEE
Confidence 357888999998 675 999999999762 2 6999999999864 2334444
Q ss_pred cCHhHHHHH
Q 035938 90 NTPDEAKRL 98 (133)
Q Consensus 90 y~~dqik~L 98 (133)
.-+.|+..|
T Consensus 143 ipk~eVe~L 151 (153)
T 2wfw_A 143 IPKAEVEDL 151 (153)
T ss_dssp ECSCC----
T ss_pred cCccchhhh
Confidence 444444443
No 13
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=69.31 E-value=9.9 Score=26.03 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=41.4
Q ss_pred CeEEEEEEEecCCceE--------EEEEeccc-----cce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 36 GQEYAEVLRMLGNGRL--------RLHWRHQA-----MHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~--------~la~IpGK-----mrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
..+.|+|+.+...+.| -|+|++.- .++ .-.++.||.|.|.....+..++.|...+.
T Consensus 32 ~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~rI~lslk 101 (115)
T 2khi_A 32 TKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLK 101 (115)
T ss_dssp CEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEETTTTEEEECCC
T ss_pred CEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEECCCCEEEEEEE
Confidence 4589999999988877 56666532 111 23588999999999998887788877654
No 14
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=65.34 E-value=3.5 Score=29.32 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=26.0
Q ss_pred cceeeEeecCCEEEEEeeeCCCCeEEEEEEcCHhH
Q 035938 60 MHKRVWIAAGDIILVGFRIYQDDKADVILINTPDE 94 (133)
Q Consensus 60 mrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~dq 94 (133)
|+.++.|+.||.|.|--=.+-...|.|+.+|...+
T Consensus 1 ~~~k~~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 35 (110)
T 3v2d_Y 1 MRVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKY 35 (110)
T ss_dssp CCCCCSCCTTSEEEECSSTTTTCEEEEEEEEGGGT
T ss_pred CCcccccCCCCEEEEeEcCCCCeEeEEEEEECCCC
Confidence 44466799999998875555556899999986643
No 15
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=61.78 E-value=7.8 Score=27.32 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=36.1
Q ss_pred EEEEEEecCCceEEEEEeccccce-e---eE--eecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHHH
Q 035938 39 YAEVLRMLGNGRLRLHWRHQAMHK-R---VW--IAAGDIILVGFRIYQDDKADVILINTPDEAKRLK 99 (133)
Q Consensus 39 ~g~V~~~lGn~~~~la~IpGKmrk-r---iW--I~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L~ 99 (133)
-++|+++.+++..-+|-+.|--|. . +- +.+||||||-. |-.+-+..+++++...
T Consensus 27 P~kVveI~~~~~~A~Vd~~Gv~reV~l~Lv~e~~~vGDyVLVHv-------GfAi~kIDeeeA~etl 86 (103)
T 3d3r_A 27 PSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHI-------GFVMNKIDRNDALQSL 86 (103)
T ss_dssp CEEEEEEETTTTEEEEEETTEEEEEECTTBSSCCCTTCEEEEEE-------EEEEEEECHHHHHHHH
T ss_pred CEEEEEEeCCCCEEEEEcCCEEEEEEEEeecCCCCCCCEEEEee-------chhhhhCCHHHHHHHH
Confidence 467777765545555666665554 2 21 45799999974 6678888888887653
No 16
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=55.23 E-value=13 Score=25.32 Aligned_cols=52 Identities=13% Similarity=0.030 Sum_probs=34.6
Q ss_pred EEEEEEEecCCceEEEEEeccccce-eeE----------eecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHH
Q 035938 38 EYAEVLRMLGNGRLRLHWRHQAMHK-RVW----------IAAGDIILVGFRIYQDDKADVILINTPDEAKRL 98 (133)
Q Consensus 38 ~~g~V~~~lGn~~~~la~IpGKmrk-riW----------I~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L 98 (133)
+-++|+++.++. -+|.+.|--|. .+- +..||||||.. |-.+.+..+++++..
T Consensus 5 IP~kVvei~~~~--A~Vd~~Gv~r~V~l~Lv~~~~~~~~~~vGD~VLVH~-------GfAi~~ideeeA~et 67 (90)
T 2ot2_A 5 VPGQIRTIDGNQ--AKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHV-------GFAMSVINEAEARDT 67 (90)
T ss_dssp EEEEEEEECSSE--EEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred cceEEEEEcCCc--EEEEcCCeEEEEEEeeeeccCCCCCCCCCCEEEEec-------ChhhhhCCHHHHHHH
Confidence 357777776653 55666665554 222 45799999973 567778888887654
No 17
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=53.96 E-value=10 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=26.4
Q ss_pred eeeEeecCCEEEEEeeeCCCCeEEEEEEcCHhH
Q 035938 62 KRVWIAAGDIILVGFRIYQDDKADVILINTPDE 94 (133)
Q Consensus 62 kriWI~~GD~VlV~~~~~~~~KgdIv~ry~~dq 94 (133)
+.+-|+.||.|.|--=.+-...|.|+.+|...+
T Consensus 39 r~~~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~ 71 (120)
T 1vq8_T 39 RNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKA 71 (120)
T ss_dssp SEEECCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred ccccccCCCEEEEEecCCCCCEEEEEEEECCCC
Confidence 368899999999976666667899999996543
No 18
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=51.98 E-value=11 Score=27.40 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=29.9
Q ss_pred EEeccccc-----eeeEeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938 54 HWRHQAMH-----KRVWIAAGDIILVGFRIYQDDKADVILINTPD 93 (133)
Q Consensus 54 a~IpGKmr-----kriWI~~GD~VlV~~~~~~~~KgdIv~ry~~d 93 (133)
|.++--+| +.+.|+.||.|.|---.+-...|.|+.+|...
T Consensus 33 a~LSkeLr~ky~vrs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 77 (127)
T 3u5e_Y 33 APLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLK 77 (127)
T ss_dssp EEBCHHHHHHHTCCEEECCTTCEEEECSSTTTTCEEEEEEEEGGG
T ss_pred CcCCHHHHHHhCcCcccccCCCEEEEeecCCCCccceEEEEECCC
Confidence 44554444 36999999999987666666789999998654
No 19
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=50.98 E-value=45 Score=24.97 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=38.9
Q ss_pred cCCCe-EEEEEEEecCCceE----------EEEEecc----ccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 33 KEEGQ-EYAEVLRMLGNGRL----------RLHWRHQ----AMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 33 p~e~e-~~g~V~~~lGn~~~----------~la~IpG----Kmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
|..|+ +.|+|+.+...+.| =|+||+- +.+. +=.++.||.|.|.....+..++.|..-+.
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk 87 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKR 87 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 45554 78999998887776 3455552 2222 33588999999999998888888887663
No 20
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.77 E-value=9.7 Score=27.42 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=29.4
Q ss_pred EEEeccccc-----eeeEeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938 53 LHWRHQAMH-----KRVWIAAGDIILVGFRIYQDDKADVILINTPD 93 (133)
Q Consensus 53 la~IpGKmr-----kriWI~~GD~VlV~~~~~~~~KgdIv~ry~~d 93 (133)
-|.++--+| +++.|+.||.|.|--=.+-...|.|+.+|...
T Consensus 28 sa~LSkeLR~ky~~r~~~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~ 73 (121)
T 3j21_U 28 SAPLSRELREKYKVRNLPVRVGDKVRIMRGDYKGHEGKVVEVDLKR 73 (121)
T ss_dssp EEEBCHHHHHHTCCSEEECCSSSEEEECSSSCSSEEEEEEEEETTT
T ss_pred cCcCCHHHHHHhCCcccccccCCEEEEeecCCCCcEeEEEEEEecC
Confidence 355554444 36899999999987555555679999998654
No 21
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=49.04 E-value=2.9 Score=30.74 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=28.7
Q ss_pred EEeccccc--e-eeEee-------cCCEEEEEeeeC-CCCeEEEEEEcCH
Q 035938 54 HWRHQAMH--K-RVWIA-------AGDIILVGFRIY-QDDKADVILINTP 92 (133)
Q Consensus 54 a~IpGKmr--k-riWI~-------~GD~VlV~~~~~-~~~KgdIv~ry~~ 92 (133)
+.+|.-++ + +.||+ .|+.+.|..++| |..-|+|+|+-.+
T Consensus 8 ~~~P~~l~Yt~~HeWv~~~~~~~~e~~~~~VGITd~Aq~~lGdiv~VelP 57 (137)
T 3tzu_A 8 RKIPGDRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLP 57 (137)
T ss_dssp --CCTTSEECTTSEEESCCTTCCCCSSCEEEEECHHHHHHHCSEEEEECC
T ss_pred ccCCccceeCCCCEEEEccCcccccCCEEEEeeCHHHHhhcCCeEEEEcC
Confidence 34455444 2 79998 699999999998 5667999998654
No 22
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=48.60 E-value=13 Score=27.31 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=29.8
Q ss_pred EEeccccc-----eeeEeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938 54 HWRHQAMH-----KRVWIAAGDIILVGFRIYQDDKADVILINTPD 93 (133)
Q Consensus 54 a~IpGKmr-----kriWI~~GD~VlV~~~~~~~~KgdIv~ry~~d 93 (133)
|.++--+| +.+.|+.||.|.|---.+-...|.|+.+|...
T Consensus 32 a~LSkeLr~ky~vRs~~IkkgD~V~Vi~GkdKGk~GkV~~V~~kk 76 (135)
T 4a17_S 32 AHLSKDLRSKYNVRSMPVRKDDEVLIVRGKFKGNKGKVTQVYRKK 76 (135)
T ss_dssp EEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTT
T ss_pred CcCCHHHHHHhCCCcccccCCCEEEEeecCCCCceeeEEEEEcCC
Confidence 44554444 36999999999987666666789999998664
No 23
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=48.53 E-value=13 Score=27.88 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=29.8
Q ss_pred EEeccccc-----eeeEeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938 54 HWRHQAMH-----KRVWIAAGDIILVGFRIYQDDKADVILINTPD 93 (133)
Q Consensus 54 a~IpGKmr-----kriWI~~GD~VlV~~~~~~~~KgdIv~ry~~d 93 (133)
|.++--+| +++.|+.||.|.|---.+-...|.|+.+|...
T Consensus 32 a~LSkELR~ky~vRs~~IkKGD~V~Vi~GkdKGk~GkVl~V~~kk 76 (150)
T 3iz5_Y 32 AALSTELRHKYNVRSIPIRKDDEVQVVRGSYKGREGKVVQVYRRR 76 (150)
T ss_dssp EEECHHHHTTTTCSEEECCSSSEEEECSSTTTTCEEEEEEEETTT
T ss_pred CcCCHHHHHHhCCcccccCCCCEEEEeecCCCCccceEEEEEcCC
Confidence 44554444 36999999999987666666789999998754
No 24
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=47.40 E-value=49 Score=24.49 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=40.2
Q ss_pred ccCCCe-EEEEEEEecCCceE----------EEEEecc----ccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL----------RLHWRHQ----AMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~----------~la~IpG----Kmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
.|..|+ +.|+|+.+...+.| -|+|++- +.+. +=.++.||.|.|.....+..++.|..-+.
T Consensus 12 ~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk 87 (175)
T 2a19_A 12 YPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKR 87 (175)
T ss_dssp SCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEE
Confidence 454554 78899988777766 3445442 1121 23488999999999998888888877653
No 25
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=43.43 E-value=73 Score=22.10 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=40.4
Q ss_pred CCCe-EEEEEEEecCCceE--------EEEEecccc----ce-eeEeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938 34 EEGQ-EYAEVLRMLGNGRL--------RLHWRHQAM----HK-RVWIAAGDIILVGFRIYQDDKADVILINTP 92 (133)
Q Consensus 34 ~e~e-~~g~V~~~lGn~~~--------~la~IpGKm----rk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~~ 92 (133)
..|+ +.|+|+.+...+.| -|+|++-=. .. .-.++.||.|.|.....+..++.|...+..
T Consensus 6 ~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~ 78 (130)
T 2k4k_A 6 EVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRA 78 (130)
T ss_dssp CTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHH
T ss_pred CCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEee
Confidence 3444 68999999887776 445554211 11 234889999999999888777777776643
No 26
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=43.02 E-value=27 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=31.6
Q ss_pred eccCCCe-EEEEEEEecCCceE-----------EEEEeccccce-eeEeecCCEEEEEeeeC
Q 035938 31 IIKEEGQ-EYAEVLRMLGNGRL-----------RLHWRHQAMHK-RVWIAAGDIILVGFRIY 79 (133)
Q Consensus 31 ~~p~e~e-~~g~V~~~lGn~~~-----------~la~IpGKmrk-riWI~~GD~VlV~~~~~ 79 (133)
..|+.|. ++|+|++..+.... .+-.++|.-++ +=.+++||+|.......
T Consensus 123 YiP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~ 184 (289)
T 2nn6_G 123 YVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVA 184 (289)
T ss_dssp CCCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEEC
T ss_pred CCCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEc
Confidence 3577665 89999999876543 11123433333 45689999999776554
No 27
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=42.47 E-value=13 Score=27.55 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=24.0
Q ss_pred eeEeecCCEEEEEeeeCCCCe-EEEEEEcCHh
Q 035938 63 RVWIAAGDIILVGFRIYQDDK-ADVILINTPD 93 (133)
Q Consensus 63 riWI~~GD~VlV~~~~~~~~K-gdIv~ry~~d 93 (133)
.+-|+.||.|.|--=.+-... |.|+.+|...
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKK 77 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEETTT
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEECCC
Confidence 467999999988766666678 9998888554
No 28
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=41.20 E-value=45 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=31.2
Q ss_pred EEEEEEEec-CCceE---------EEEEeccccceee----------------EeecCCEEEEEeee
Q 035938 38 EYAEVLRML-GNGRL---------RLHWRHQAMHKRV----------------WIAAGDIILVGFRI 78 (133)
Q Consensus 38 ~~g~V~~~l-Gn~~~---------~la~IpGKmrkri----------------WI~~GD~VlV~~~~ 78 (133)
.++.|.++| ++.+. +++++.+.+...- -+++||-|+|++.-
T Consensus 160 ev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~ra 226 (251)
T 3m9b_A 160 EISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKA 226 (251)
T ss_dssp EEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTTT
T ss_pred cEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCCC
Confidence 567888888 44464 8999999986531 68999999998753
No 29
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=39.18 E-value=13 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.6
Q ss_pred eeeEeecCCEEEEEeeeCCCCeEEEEEEcCHhH
Q 035938 62 KRVWIAAGDIILVGFRIYQDDKADVILINTPDE 94 (133)
Q Consensus 62 kriWI~~GD~VlV~~~~~~~~KgdIv~ry~~dq 94 (133)
+++-|+.||.|.|--=.+-...|.|+.+|...+
T Consensus 12 rkm~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ 44 (115)
T 2zjr_R 12 DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQ 44 (115)
T ss_dssp SCCSSCTTSEEECCSSSSTTCEEEEEEEETTTT
T ss_pred eeCcccCCCEEEEeEcCCCCcEEEEEEEECCCC
Confidence 356799999999876555567899999996543
No 30
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=39.06 E-value=23 Score=23.28 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=29.6
Q ss_pred EEEEEecCCceEEEEEeccccce-eeE----eecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHH
Q 035938 40 AEVLRMLGNGRLRLHWRHQAMHK-RVW----IAAGDIILVGFRIYQDDKADVILINTPDEAKRL 98 (133)
Q Consensus 40 g~V~~~lGn~~~~la~IpGKmrk-riW----I~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L 98 (133)
++|+++ .+ ..-+|.+.|--|. .+- ..+||||||.. |-.+.+.++++++..
T Consensus 7 ~kVvei-~~-~~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~-------GfAi~~ideeeA~et 61 (75)
T 2z1c_A 7 GKVIEV-NG-PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHT-------GFAIEKLDEKKAMEI 61 (75)
T ss_dssp EEEEEE-ET-TEEEEEETTEEEEEECTTSTTCCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred EEEEEE-CC-CEEEEEcCCEEEEEEEEEeCCCCCCCEEEEec-------chhhhhCCHHHHHHH
Confidence 566666 32 3334444443332 111 36799999973 567778888887654
No 31
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=36.64 E-value=87 Score=20.65 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=29.8
Q ss_pred CCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEe
Q 035938 34 EEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGF 76 (133)
Q Consensus 34 ~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~ 76 (133)
.....+|.|+++++.+.+ +++.+.+..-+ =-+++|+.|.+..
T Consensus 16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~-~~LkpG~rVaLn~ 66 (85)
T 3h43_A 16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNP-DDLAPGKRVCLNQ 66 (85)
T ss_dssp SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCG-GGCCTTCEEEECT
T ss_pred CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCH-HHCCCCCEEEECC
Confidence 457899999999998886 45555555443 2357888887764
No 32
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=36.20 E-value=28 Score=22.83 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=39.2
Q ss_pred eeeccCCCe-EEEEEEEecCCceE----------EEEEecccc-----ce--eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938 29 ELIIKEEGQ-EYAEVLRMLGNGRL----------RLHWRHQAM-----HK--RVWIAAGDIILVGFRIYQDDKADVILIN 90 (133)
Q Consensus 29 el~~p~e~e-~~g~V~~~lGn~~~----------~la~IpGKm-----rk--riWI~~GD~VlV~~~~~~~~KgdIv~ry 90 (133)
.+..|..|+ +.|+|+ +...+.| =|+|++-.+ .. .+. .||.|.|.....+..++.|...+
T Consensus 5 ~y~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~--~Gd~V~VkV~~vd~~~~kI~lsl 81 (88)
T 1luz_A 5 CYSLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL--VGKTVKVKVIRVDYTKGYIDVNY 81 (88)
T ss_dssp CSCCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH--TTCEEEEEEEEEETTTTEEEEEE
T ss_pred EecCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe--CCCEEEEEEEEEECCCCEEEEEE
Confidence 345667665 678888 8888776 345555112 11 122 89999999998887777776543
No 33
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=35.53 E-value=66 Score=25.16 Aligned_cols=68 Identities=9% Similarity=0.151 Sum_probs=40.3
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEeccccceee--------EeecCCEEEEEeeeCCCC------------
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQAMHKRV--------WIAAGDIILVGFRIYQDD------------ 82 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~IpGKmrkri--------WI~~GD~VlV~~~~~~~~------------ 82 (133)
.|..|+ ++|+|+.+...+.+ -+-|++.=.-+++ .+++||.|.+.....+++
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~l 150 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDL 150 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTTC
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEccccC
Confidence 466655 89999999887665 1222221000222 689999999777654321
Q ss_pred ---eEEEEEEcCHhHHHHHH
Q 035938 83 ---KADVILINTPDEAKRLK 99 (133)
Q Consensus 83 ---KgdIv~ry~~dqik~L~ 99 (133)
++=+++..++.-++.|.
T Consensus 151 G~L~~G~v~~vs~~~v~rl~ 170 (251)
T 2je6_I 151 GRVSNGIVIDIMPVKVPRVI 170 (251)
T ss_dssp EECCSSCEEECCGGGHHHHH
T ss_pred CcccCCEEEEECHHHhHHHh
Confidence 12245566777666664
No 34
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=32.91 E-value=61 Score=21.58 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=37.8
Q ss_pred cCCCe-EEEEEEEecCCceE-EEE-Eeccccce-----------eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 33 KEEGQ-EYAEVLRMLGNGRL-RLH-WRHQAMHK-----------RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 33 p~e~e-~~g~V~~~lGn~~~-~la-~IpGKmrk-----------riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
+..|+ +.|+|+.+...+.| .|. .+.|=+.. .-.++.||.|.|.....+..++.|...+.
T Consensus 29 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~~~~ki~LS~k 101 (109)
T 2khj_A 29 NKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVR 101 (109)
T ss_dssp CCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEETTTTEEEEETT
T ss_pred CCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 34454 78999999988887 111 12222221 11488999999999888766666665543
No 35
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=32.24 E-value=8.4 Score=28.48 Aligned_cols=30 Identities=30% Similarity=0.809 Sum_probs=24.9
Q ss_pred eeEee-cCCEEEEEeeeC-CCCeEEEEEEcCH
Q 035938 63 RVWIA-AGDIILVGFRIY-QDDKADVILINTP 92 (133)
Q Consensus 63 riWI~-~GD~VlV~~~~~-~~~KgdIv~ry~~ 92 (133)
+.||+ .||.+.|..++| |..-|+|+|+-.+
T Consensus 31 HeWv~~eg~~~~VGITd~Aq~~LGdIvfVelP 62 (143)
T 3mxu_A 31 HEWLSVEGQVVTVGITDYAQEQLGDLVFIDLP 62 (143)
T ss_dssp SEEEEEETTEEEEEECHHHHHHHCSEEEEECC
T ss_pred CEEEEEcCCEEEEeeCHHHHhhcCCeEEEEcC
Confidence 68987 589999999998 5667999998655
No 36
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=31.46 E-value=55 Score=24.40 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=41.8
Q ss_pred ccCCC-eEEEEEEEecCCceE-------EEEEe-----ccccce-eeEeecCCEEEEEeeeCCC-------------C--
Q 035938 32 IKEEG-QEYAEVLRMLGNGRL-------RLHWR-----HQAMHK-RVWIAAGDIILVGFRIYQD-------------D-- 82 (133)
Q Consensus 32 ~p~e~-e~~g~V~~~lGn~~~-------~la~I-----pGKmrk-riWI~~GD~VlV~~~~~~~-------------~-- 82 (133)
.|..| -++|+|++..+...+ ..|.+ +|.-++ +=.+++||+|......... .
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~~~~~~~Ltc~~~~~~r~ 83 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIECFDSTTGRD 83 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEESSCTTTCSC
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEecCCCceEEEecccccccc
Confidence 35554 489999999876544 11222 233333 5568999999866544321 1
Q ss_pred ------eEEEEEEcCHhHHHHHHHc
Q 035938 83 ------KADVILINTPDEAKRLKNI 101 (133)
Q Consensus 83 ------KgdIv~ry~~dqik~L~k~ 101 (133)
.+=.+..-++.-++.|...
T Consensus 84 ~~lG~L~~G~l~~v~~~~v~rl~~~ 108 (175)
T 2ja9_A 84 AGFGILEDGMIIDVNLNFARQLLFN 108 (175)
T ss_dssp TTCEEECSCEEEECCHHHHHHHHHC
T ss_pred cCCcCcCCCEEEEEcHHHhhHHhcC
Confidence 1224556677778877764
No 37
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=30.99 E-value=9.1 Score=27.53 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=24.0
Q ss_pred eeEee-cCCEEEEEeeeC-CCCeEEEEEEcCH
Q 035938 63 RVWIA-AGDIILVGFRIY-QDDKADVILINTP 92 (133)
Q Consensus 63 riWI~-~GD~VlV~~~~~-~~~KgdIv~ry~~ 92 (133)
+.|++ .||.+.|..++| |..-|+|+|+-.|
T Consensus 9 HeWv~~e~~~~~vGITd~Aq~~lGdiv~velp 40 (125)
T 3klr_A 9 HEWVTTENGVGTVGISNFAQEALGDVVYCSLP 40 (125)
T ss_dssp SEEEEEETTEEEEEECHHHHHHHCSEEEEECC
T ss_pred CEEEEEcCCEEEEeeCHHHHhhCCCeEEEEeC
Confidence 78887 588999999998 4557899988654
No 38
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=29.52 E-value=10 Score=22.73 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.3
Q ss_pred EeccccceeeEeecCCEEEEEeee
Q 035938 55 WRHQAMHKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 55 ~IpGKmrkriWI~~GD~VlV~~~~ 78 (133)
.||-.+|+.+=|.+||.|.+...+
T Consensus 15 ~IPk~ir~~lgi~~Gd~v~i~~~~ 38 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGDLVKVTFDE 38 (53)
T ss_dssp CCCHHHHHHSCCCTTCEEEEEECS
T ss_pred EeCHHHHHHcCcCCCCEEEEEEEC
Confidence 478888999999999999988653
No 39
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=29.17 E-value=1e+02 Score=21.06 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=29.1
Q ss_pred CCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeee
Q 035938 34 EEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 34 ~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~ 78 (133)
+....+|.|+++++.+.+ +++.+.+..-+ =-+++|+.|.+....
T Consensus 35 ~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~-~~LkpG~rVaLn~~s 87 (109)
T 2wg5_A 35 SPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINE-EELKPGARVALNQQT 87 (109)
T ss_dssp SCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCT-TTCCTTCEEEEETTT
T ss_pred CCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCH-HHCCCCCEEEECCcc
Confidence 457899999999998876 34444443332 227788888876433
No 40
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=28.70 E-value=1e+02 Score=23.35 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=34.8
Q ss_pred ccCCCe-EEEEEEEecCCceE-EE-E--------Eeccccc------eee---E----eecCCEEEEEeeeCCCCeEEEE
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL-RL-H--------WRHQAMH------KRV---W----IAAGDIILVGFRIYQDDKADVI 87 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~-~l-a--------~IpGKmr------kri---W----I~~GD~VlV~~~~~~~~KgdIv 87 (133)
.|..|+ ++|+|+.+...+.+ -+ | .+.|=++ .++ . +++||+|.+.....++..+.|.
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~ 157 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYL 157 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEE
Confidence 466655 89999999887776 22 1 1233221 112 2 8899999988877655444343
No 41
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=28.21 E-value=15 Score=25.41 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=23.7
Q ss_pred EEEEecccccee-----eEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 52 RLHWRHQAMHKR-----VWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 52 ~la~IpGKmrkr-----iWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
+..++.|-=.-. --|..||+|+|++.. ....|+|+....
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~~-~~~~Gdivv~~~ 88 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFPDGMLILVDPEQ-AVEPGDFCIARL 88 (133)
T ss_dssp EEEECCSSTTCCC---CCCCCTTCEEEEETTS-CCCTTSEEEEEE
T ss_pred EEEEEeCCCcCCCcCCCCccCCCCEEEEccCC-CCCCCCEEEEEE
Confidence 455566543331 458899999998754 344566665543
No 42
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=27.84 E-value=20 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=15.5
Q ss_pred EeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 65 WIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 65 WI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
-|..||+|+|++.. ....|+|+-...
T Consensus 32 ~i~~Gd~v~Vd~~~-~~~~Gdivv~~~ 57 (109)
T 1kca_A 32 SFPDGMLILVDPEQ-AVEPGDFCIARL 57 (109)
T ss_dssp CCCTTCEEEEETTS-CCCTTCEEEEEC
T ss_pred eeCCCCEEEEecCC-cCCCCCEEEEEE
Confidence 46788888887653 234565554433
No 43
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=26.71 E-value=14 Score=23.16 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=20.8
Q ss_pred EEeccccceeeEeecCCEEEEEee
Q 035938 54 HWRHQAMHKRVWIAAGDIILVGFR 77 (133)
Q Consensus 54 a~IpGKmrkriWI~~GD~VlV~~~ 77 (133)
..||-.+|+.+=|.+||.|.+...
T Consensus 24 ItIPkeiR~~Lgi~~Gd~l~i~~~ 47 (59)
T 1yfb_A 24 VVIPIELRRTLGIAEKDALEIYVD 47 (59)
T ss_dssp EECCHHHHHHTTCCTTCEEEEEEE
T ss_pred EEeCHHHHHHcCCCCCCEEEEEEE
Confidence 358999999999999999998875
No 44
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=26.51 E-value=20 Score=27.57 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=7.7
Q ss_pred eecCCEEEEEe
Q 035938 66 IAAGDIILVGF 76 (133)
Q Consensus 66 I~~GD~VlV~~ 76 (133)
+++||+|++..
T Consensus 50 ~~rGDIvvf~~ 60 (248)
T 1b12_A 50 PKRGDIVVFKY 60 (248)
T ss_dssp CCTTCEEEEEC
T ss_pred CCCCcEEEEEe
Confidence 56788777764
No 45
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=26.31 E-value=62 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred eeEeecCCEEEEEeeeCC-CCeEEEEEEcC
Q 035938 63 RVWIAAGDIILVGFRIYQ-DDKADVILINT 91 (133)
Q Consensus 63 riWI~~GD~VlV~~~~~~-~~KgdIv~ry~ 91 (133)
-+-|..||+|||+..+-+ +.=|.|.+.|.
T Consensus 36 ~~~i~vGd~VLI~~~D~~~PyVAki~~lye 65 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDNKKPYVAKLIELFQ 65 (163)
T ss_dssp EEEEETTCEEEECCSSSSCCEEEEEEEEEE
T ss_pred CeEEeeCCEEEEeCCcccCChhHHHHHHHh
Confidence 577999999999887643 22466666654
No 46
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=26.04 E-value=20 Score=24.04 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=11.6
Q ss_pred eecCCEEEEEeeeCCCCeEEEE
Q 035938 66 IAAGDIILVGFRIYQDDKADVI 87 (133)
Q Consensus 66 I~~GD~VlV~~~~~~~~KgdIv 87 (133)
|..||+|+|+++. ....|+|+
T Consensus 42 i~~Gd~v~vd~~~-~~~~gdiv 62 (116)
T 1umu_A 42 ISDGDLLIVDSAI-TASHGDIV 62 (116)
T ss_dssp CCTTCEEEEETTS-CCCTTCEE
T ss_pred CCCCCEEEEEcCC-CCCCCCEE
Confidence 5677777776643 23344444
No 47
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=25.90 E-value=49 Score=25.30 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=36.3
Q ss_pred EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc
Q 035938 52 RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL 114 (133)
Q Consensus 52 ~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~ 114 (133)
+-.-||.|+.+ .||| ..|+++|.. |+ +.+++|+.-|+..|.=|.+|...=..
T Consensus 137 q~lgiptki~~G~I~i-~~d~~v~k~-------G~---~v~~~~A~lL~~l~i~p~~~~l~l~~ 189 (213)
T 3jsy_A 137 KSVGIPAAIEKGKIAI-KEDKVVVKK-------GE---VVSPKLAAVLDRLGIKPIKVGLNILA 189 (213)
T ss_dssp HHTTCCEEEETTEEEE-CSCEEEECT-------TS---BCCHHHHHHHHHTTCCCEEESCEEEE
T ss_pred HHcCCceEeecCeEEE-ccceEEEec-------CC---CcCHHHHHHHHHcCCCcEEEEEEEEE
Confidence 44445666666 6777 456666642 33 46899999999999999999754443
No 48
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.38 E-value=89 Score=23.99 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=41.5
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEeccc----cce--eeEeecCCEEEEEeeeCCCC-----------eE-
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQA----MHK--RVWIAAGDIILVGFRIYQDD-----------KA- 84 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~IpGK----mrk--riWI~~GD~VlV~~~~~~~~-----------Kg- 84 (133)
.|..|+ ++|+|+...+.+.+ -+-|++.= ..+ +=.+++||.|.+.....+++ =|
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG~ 133 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICRP 133 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCCc
Confidence 467665 89999999887665 12222210 111 23588999999877665421 12
Q ss_pred ---EEEEEcCHhHHHHHH
Q 035938 85 ---DVILINTPDEAKRLK 99 (133)
Q Consensus 85 ---dIv~ry~~dqik~L~ 99 (133)
-+++..++.-++.|.
T Consensus 134 L~~G~v~~vs~~~v~rl~ 151 (229)
T 2ba0_A 134 IRFGRIVAINPARVPRVI 151 (229)
T ss_dssp ESSSEEEECCGGGHHHHH
T ss_pred ccCCEEEEECHHHhHHHh
Confidence 256677777777765
No 49
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=25.31 E-value=47 Score=23.02 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=21.4
Q ss_pred EeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938 65 WIAAGDIILVGFRIYQDDKADVILINTP 92 (133)
Q Consensus 65 WI~~GD~VlV~~~~~~~~KgdIv~ry~~ 92 (133)
.|+.||.|.|--=.+-...|.|+.+|..
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~ 30 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSS 30 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETT
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeC
Confidence 4789999988755555567999999876
No 50
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=24.09 E-value=1.7e+02 Score=23.11 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=40.9
Q ss_pred ccCCC-eEEEEEEEecCCceE----------EEEEeccccce-----eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 32 IKEEG-QEYAEVLRMLGNGRL----------RLHWRHQAMHK-----RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 32 ~p~e~-e~~g~V~~~lGn~~~----------~la~IpGKmrk-----riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
.|..| .+.|+|+.+...+.| -|+|++-=... .-.++.||.|.|.....+..++.|..-+.
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk 83 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLR 83 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 35444 478999988877666 34555532111 12488999999999998877777777663
No 51
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=23.75 E-value=12 Score=28.05 Aligned_cols=30 Identities=37% Similarity=0.760 Sum_probs=24.9
Q ss_pred eeEee-cCC-EEEEEeeeC-CCCeEEEEEEcCH
Q 035938 63 RVWIA-AGD-IILVGFRIY-QDDKADVILINTP 92 (133)
Q Consensus 63 riWI~-~GD-~VlV~~~~~-~~~KgdIv~ry~~ 92 (133)
+.||+ .|| .+.|..++| |..-|+|+|+-.+
T Consensus 35 HeWv~~egdg~~~VGITd~Aq~~LGdIvfVeLP 67 (155)
T 3hgb_A 35 HEWIRRSGDDTVRVGITDYAQSALGDVVFVQLP 67 (155)
T ss_dssp SEEEEEEETTEEEEEECHHHHHHHCSEEEEECC
T ss_pred CEEEEEcCCcEEEEeeCHHHHHhcCCeEEEEcC
Confidence 79998 478 999999998 5667999998655
No 52
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=23.52 E-value=25 Score=25.83 Aligned_cols=27 Identities=19% Similarity=0.161 Sum_probs=19.4
Q ss_pred EeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938 65 WIAAGDIILVGFRIYQDDKADVILINTP 92 (133)
Q Consensus 65 WI~~GD~VlV~~~~~~~~KgdIv~ry~~ 92 (133)
.|..||+|+|++.. +..-|+|+.....
T Consensus 159 ~i~~Gd~v~vd~~~-~~~~g~ivv~~~~ 185 (236)
T 3bdn_A 159 SFPDGMLILVDPEQ-AVEPGDFCIARLG 185 (236)
T ss_dssp CCCSSCEEEECCSS-CCCTTSEEEEEST
T ss_pred cCCCCCEEEECCCC-CCCCCcEEEEEEC
Confidence 38899999999875 4456776665543
No 53
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=22.77 E-value=16 Score=24.75 Aligned_cols=26 Identities=19% Similarity=0.094 Sum_probs=21.7
Q ss_pred EEeccccceeeEeecCCEEEEEeeeC
Q 035938 54 HWRHQAMHKRVWIAAGDIILVGFRIY 79 (133)
Q Consensus 54 a~IpGKmrkriWI~~GD~VlV~~~~~ 79 (133)
..||-.+|+.+=|.+||.|.+...++
T Consensus 62 itIPkeiR~~lgi~~Gd~l~~~~~~~ 87 (92)
T 2glw_A 62 VIIPKALRDVIGIKPGEVIEVLLLGH 87 (92)
T ss_dssp EECCHHHHHHHTCCTTCEEEEEEEEE
T ss_pred EECcHHHHHHcCCCCCCEEEEEEeCc
Confidence 45788889999999999999987653
No 54
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=22.67 E-value=1.1e+02 Score=22.46 Aligned_cols=47 Identities=15% Similarity=0.018 Sum_probs=30.1
Q ss_pred eccCCCe-EEEEEEEecCCceE--EEE----------Eeccccce-----------eeEeecCCEEEEEeee
Q 035938 31 IIKEEGQ-EYAEVLRMLGNGRL--RLH----------WRHQAMHK-----------RVWIAAGDIILVGFRI 78 (133)
Q Consensus 31 ~~p~e~e-~~g~V~~~lGn~~~--~la----------~IpGKmrk-----------riWI~~GD~VlV~~~~ 78 (133)
..|+ |+ ++|+|+++...+.+ ..+ .+.|=++. +=.+++||.|.+....
T Consensus 54 y~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 54 EIVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CCCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred ccCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 4567 65 89999999887766 333 12222221 2347889999888765
No 55
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=22.63 E-value=2.6e+02 Score=24.62 Aligned_cols=44 Identities=14% Similarity=-0.083 Sum_probs=31.2
Q ss_pred ecCCEEEEEeeeCC----CC-eEEEEEEcCH-----hHHHHHHHcCCCCccccc
Q 035938 67 AAGDIILVGFRIYQ----DD-KADVILINTP-----DEAKRLKNIGELPDGTRL 110 (133)
Q Consensus 67 ~~GD~VlV~~~~~~----~~-KgdIv~ry~~-----dqik~L~k~g~~P~~f~~ 110 (133)
+.||+|+|+...|. .- .|.|+.++.. -++..+...--+|.+|..
T Consensus 123 ~~g~~v~v~i~~~p~~~~~p~~g~i~~~LG~~~d~~~e~~~~l~~~~l~~~fp~ 176 (644)
T 2id0_A 123 KEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVPWWVTLARHNLEKEAPD 176 (644)
T ss_dssp CSSCEEEEEEEECGGGTCSSCEEEEEEEEECTTCTTHHHHHHHHHTTCCCSCCC
T ss_pred CCCCEEEEEEecCcCCCCCCceEEEEEEeCCCCCccchHHHHHHHcCCCCCCCh
Confidence 68999999987763 23 7999999933 355555555557777754
No 56
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.27 E-value=32 Score=25.12 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=18.1
Q ss_pred EeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 65 WIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 65 WI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
-|..||+|+|++.. ...-|+|+....
T Consensus 123 ~i~~GD~viv~~~~-~~~~G~ivv~~~ 148 (196)
T 3k2z_A 123 HICDGDLVLVRRQD-WAQNGDIVAAMV 148 (196)
T ss_dssp TCCTTCEEEEEECS-CCCTTCEEEEEE
T ss_pred CCCCCCEEEEeccC-cCCCCCEEEEEE
Confidence 48899999999874 334566665543
No 57
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.64 E-value=65 Score=26.40 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=36.8
Q ss_pred EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc
Q 035938 52 RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL 114 (133)
Q Consensus 52 ~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~ 114 (133)
+-.-||.|+.+ .||| ..|+++|. +|+ +.+++|+.-|+..|.=|-+|...=..
T Consensus 141 q~lgiptki~~G~I~i-~~d~~v~k-------~G~---~v~~~~A~lL~~l~i~p~~~~l~l~~ 193 (339)
T 3j21_k 141 QAMGIPARIERGKVTI-QKDTVVLK-------AGE---EITPELANILNALGIQPLEVGLDLLA 193 (339)
T ss_dssp HHHTCCEEEETTEEEE-CSCEEEEC-------TTS---BCCHHHHHHHHHHTCCCSCCSCEEEE
T ss_pred HHcCCCeEeccCeEEE-ccceEEEe-------cCC---CcCHHHHHHHHHcCCCcEEeeeeEEE
Confidence 34445666666 7777 45666664 333 46899999999999999999754433
No 58
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.63 E-value=60 Score=26.41 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=30.7
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEec-----ccc-cee---------eEeecCCEEEEEeeeC
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRH-----QAM-HKR---------VWIAAGDIILVGFRIY 79 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~Ip-----GKm-rkr---------iWI~~GD~VlV~~~~~ 79 (133)
.|..|+ ++|+|+.+.+.+.+ -+++++ |-. |++ =.+++||+|.+.....
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv 163 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAV 163 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEc
Confidence 577766 89999999887766 355654 221 222 2588999998665543
No 59
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=20.87 E-value=1.6e+02 Score=19.19 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=10.0
Q ss_pred eecCCEEEEEeeeC
Q 035938 66 IAAGDIILVGFRIY 79 (133)
Q Consensus 66 I~~GD~VlV~~~~~ 79 (133)
++.||++.+.-++-
T Consensus 48 VR~GDIl~L~EtER 61 (67)
T 3u5c_c 48 VRENDILVLMESER 61 (67)
T ss_dssp CCTTCEEEESSSSC
T ss_pred cccCCEEEEehhhh
Confidence 56899988765543
No 60
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=20.66 E-value=11 Score=24.86 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=30.0
Q ss_pred EEEEeccccceeeEeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938 52 RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTP 92 (133)
Q Consensus 52 ~la~IpGKmrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~ 92 (133)
+-..||.-+++.+=|++||.+.+... +..|+|+..|.+
T Consensus 25 yYInIPaeI~kaLgIk~gD~fel~ve---~kdgeIvLcykR 62 (68)
T 3o27_A 25 FYLLIPKDIAEALDIKPDDTFILNME---QKDGDIVLSYKR 62 (68)
T ss_dssp EEEEECHHHHHHTTCCTTCCEEEEEE---EETTEEEEEEEE
T ss_pred EEEeCcHHHHHHhCCCCCCEEEEEEe---cCCCeEEEEehh
Confidence 55689999999999999999988765 345778766654
No 61
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=20.51 E-value=66 Score=19.66 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=16.8
Q ss_pred eEEEEEEcCHhHHHHHHHcCCCCc
Q 035938 83 KADVILINTPDEAKRLKNIGELPD 106 (133)
Q Consensus 83 KgdIv~ry~~dqik~L~k~g~~P~ 106 (133)
.--++.|+++|||..|+.. .|.
T Consensus 13 tkpvvvrlypdeiealksr--vpa 34 (53)
T 2kke_A 13 TKPVVVRLYPDEIEALKSR--VPA 34 (53)
T ss_dssp SEEEEEEECHHHHHHHHTT--CCS
T ss_pred CCceEEEeChhHHHHHHhc--CCC
Confidence 4568889999999999643 454
Done!