Query 035938
Match_columns 133
No_of_seqs 113 out of 551
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 13:05:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d7qa_ b.40.4.5 (A:) Translat 100.0 1E-38 7.3E-43 239.0 12.7 128 2-133 1-143 (143)
2 d1jt8a_ b.40.4.5 (A:) Archaeal 100.0 1.3E-30 9.4E-35 185.4 2.6 84 24-107 8-101 (102)
3 d1ah9a_ b.40.4.5 (A:) Translat 99.8 9.7E-22 7.1E-26 131.8 3.8 56 36-91 6-71 (71)
4 d1hr0w_ b.40.4.5 (W:) Translat 99.8 7E-21 5.1E-25 127.5 -1.5 54 36-89 7-70 (71)
5 d1u0la1 b.40.4.5 (A:3-68) Prob 97.6 5.4E-05 3.9E-09 48.2 5.9 51 39-91 4-64 (66)
6 d1t9ha1 b.40.4.5 (A:1-67) Prob 97.6 6.2E-05 4.5E-09 48.1 5.9 51 39-91 3-65 (67)
7 d1g2914 b.40.6.3 (1:302-372) M 81.9 1.2 8.7E-05 26.5 4.6 44 31-78 2-56 (71)
8 d3d3ra1 b.40.14.1 (A:1-76) Hyd 78.4 5.6 0.00041 24.8 7.2 53 39-98 6-64 (76)
9 d2nn6g1 b.40.4.5 (G:107-194) S 75.6 1.9 0.00014 27.4 4.3 50 33-82 4-66 (88)
10 d2je6i1 b.40.4.5 (I:66-152) S1 69.2 5.9 0.00043 24.2 5.6 58 32-90 4-78 (87)
11 d1p3ha_ b.35.1.1 (A:) Chaperon 66.5 4.2 0.0003 26.0 4.5 45 30-78 27-74 (99)
12 d2z0sa1 b.40.4.5 (A:60-147) S1 60.3 7.6 0.00055 23.7 4.7 58 30-88 2-77 (88)
13 d2ja9a1 b.40.4.5 (A:62-151) S1 60.0 16 0.0011 22.9 6.4 55 33-87 5-74 (90)
14 d1vqot1 b.34.5.1 (T:1-119) Rib 59.1 3.4 0.00025 28.0 3.0 32 63-94 39-70 (119)
15 d2ahob2 b.40.4.5 (B:1-84) Euka 58.3 8.3 0.00061 23.2 4.6 59 31-89 7-81 (84)
16 d1f39a_ b.87.1.1 (A:) lambda r 55.6 2 0.00014 27.4 1.2 28 65-93 24-51 (101)
17 d2ba0a1 b.40.4.5 (A:53-135) S1 54.9 9.5 0.00069 22.9 4.5 56 32-88 2-72 (83)
18 d1kl9a2 b.40.4.5 (A:3-88) Euka 51.2 22 0.0016 21.4 6.4 58 32-89 10-83 (86)
19 d2zjrr1 b.34.5.1 (R:4-113) Rib 50.8 3.2 0.00023 27.8 1.7 35 60-94 7-41 (110)
20 d2nn6h1 b.40.4.5 (H:73-167) S1 50.6 2.1 0.00015 27.2 0.7 55 32-87 5-83 (95)
21 d1aono_ b.35.1.1 (O:) Chaperon 44.9 4.9 0.00035 25.4 1.8 15 63-77 56-70 (97)
22 d2ot2a1 b.40.14.1 (A:1-90) Hyd 41.5 17 0.0012 23.2 4.1 53 38-99 5-68 (90)
23 d1v43a2 b.40.6.3 (A:304-373) H 36.5 34 0.0025 19.4 5.8 35 40-78 12-55 (70)
24 d2nn6i1 b.40.4.5 (I:61-185) Ex 31.8 31 0.0022 22.6 4.4 48 32-79 4-75 (125)
25 d2ix0a1 b.40.4.5 (A:83-172) Ex 31.2 53 0.0039 20.0 6.5 26 66-91 40-70 (90)
26 d2ix0a2 b.40.4.5 (A:4-82) Exor 30.6 19 0.0014 22.1 2.9 52 36-91 17-77 (79)
27 d2gy9q1 b.40.4.5 (Q:5-82) Ribo 30.4 54 0.0039 19.9 5.4 27 52-83 39-66 (78)
28 d1we3o_ b.35.1.1 (O:) Chaperon 30.4 7.6 0.00055 24.5 0.9 43 30-77 26-71 (96)
29 d2aama1 c.1.8.15 (A:28-312) Hy 29.4 12 0.0009 27.9 2.2 32 70-105 28-59 (285)
30 d2z1ca1 b.40.14.1 (A:2-72) Hyd 28.9 9.9 0.00072 23.3 1.2 50 40-98 6-60 (71)
31 d1o7ia_ b.40.4.3 (A:) Archaeal 28.8 57 0.0041 20.4 5.3 39 37-75 16-72 (115)
32 d1yira2 d.41.2.2 (A:4-144) Nic 27.2 10 0.00073 25.9 1.2 22 88-109 65-86 (141)
33 d2jdqd1 d.361.1.1 (D:688-756) 24.3 18 0.0013 22.0 1.9 19 62-80 35-53 (69)
34 d2ix0a3 b.40.4.5 (A:558-644) E 23.8 74 0.0054 19.3 6.8 26 64-89 59-84 (87)
35 d1hyoa2 d.177.1.1 (A:119-416) 23.6 17 0.0013 27.4 2.1 18 61-78 261-278 (298)
36 d1e32a1 b.52.2.3 (A:21-106) Me 22.3 9.4 0.00069 24.0 0.2 27 52-78 60-86 (86)
37 d2f7fa2 d.41.2.1 (A:4-140) Put 21.9 17 0.0012 24.2 1.5 22 88-109 63-84 (137)
38 d1cz5a1 b.52.2.3 (A:1-91) N-te 21.5 37 0.0027 21.3 3.1 56 35-93 4-60 (91)
39 d1go3e1 b.40.4.5 (E:79-184) C- 21.1 90 0.0065 19.2 6.6 53 33-85 1-77 (106)
40 d1v70a_ b.82.1.9 (A:) Hypothet 20.8 78 0.0057 18.4 6.4 57 36-92 26-103 (105)
41 d2vnud1 b.40.4.5 (D:400-494) E 20.4 91 0.0066 19.0 5.4 39 67-105 45-92 (95)
42 d2uubq1 b.40.4.5 (Q:2-101) Rib 20.0 72 0.0053 20.3 4.4 36 52-92 41-81 (100)
No 1
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=1e-38 Score=239.00 Aligned_cols=128 Identities=57% Similarity=0.882 Sum_probs=115.9
Q ss_pred CCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEE
Q 035938 2 ANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDII 72 (133)
Q Consensus 2 ~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~V 72 (133)
|+|+|+||| ++|++++ .+....++++.|+++|+||+|+++|||++| +||+||||||+++||.+||+|
T Consensus 1 pKN~~~g~k---~kk~~k~-~~~~~~~~l~~~ee~e~ya~V~k~lG~~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~V 76 (143)
T d1d7qa_ 1 PKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 76 (143)
T ss_dssp CCCCCSSSS---SSCCCCC-CSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEE
T ss_pred CCCCCCCcc---ccccccc-cCcccceeeccCCCCeEEEEEEEEcCCCEEEEEECCCCEEEEEecCcceeEEEEeCCCEE
Confidence 899999999 8888887 677778999999999999999999999998 999999999999999999999
Q ss_pred EEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc-ccccCCcceee-----ccCCCCCC
Q 035938 73 LVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL-LLILMMTPMLF-----QDNDIDKI 133 (133)
Q Consensus 73 lV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~-~~~~~~~~~~f-----~~~did~i 133 (133)
||++|+|+++||||+|+|+++|+++|+++++||+.|..++.. ++..+++.+.| +++|+|+|
T Consensus 77 lV~~rd~e~~K~DIl~~Y~~~e~~~L~~~~~ip~~~~~~~~~~~~~~~d~~i~F~~~~~dd~d~d~i 143 (143)
T d1d7qa_ 77 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI 143 (143)
T ss_dssp EEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCCCCCCCCCCCSCSSCCSCSCC
T ss_pred EEeccCCcCcEEEEEEECCHHHHHHHHHCCCCChhhhhccccCCCCccccceeecCCCCCccccccC
Confidence 999999999999999999999999999999999999876655 55555666777 67888887
No 2
>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.96 E-value=1.3e-30 Score=185.42 Aligned_cols=84 Identities=27% Similarity=0.406 Sum_probs=77.2
Q ss_pred cccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCC-CeEEEEEEcCHh
Q 035938 24 EDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQD-DKADVILINTPD 93 (133)
Q Consensus 24 ~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~-~KgdIv~ry~~d 93 (133)
......|+.|+++|+||+|++++||++| ++|+|||||||++||..||+|||++|+|+. +||||+|+|+++
T Consensus 8 ~~~~~~lp~~ee~e~y~~V~k~lG~~~~~V~c~dg~~rl~~irGK~Rk~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~~~ 87 (102)
T d1jt8a_ 8 QQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT 87 (102)
T ss_dssp CCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred cceeeECCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcCCcceeeEecCCCEEEEEeeecCCCcEEEEEEECCHH
Confidence 3344557777899999999999999998 999999999999999999999999999995 699999999999
Q ss_pred HHHHHHHcCCCCcc
Q 035938 94 EAKRLKNIGELPDG 107 (133)
Q Consensus 94 qik~L~k~g~~P~~ 107 (133)
|+++|+++|+||+.
T Consensus 88 ev~~L~~~~~ipe~ 101 (102)
T d1jt8a_ 88 QVEWLKRKGYLDEL 101 (102)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCc
Confidence 99999999999975
No 3
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=99.83 E-value=9.7e-22 Score=131.76 Aligned_cols=56 Identities=21% Similarity=0.220 Sum_probs=53.1
Q ss_pred CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
.|+.|+|+++|||++| ++|+||||||+ +|||.+||.|+|++||||++||+|+|||.
T Consensus 6 ie~~G~V~e~lg~~~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd~~kgrIi~R~k 71 (71)
T d1ah9a_ 6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR 71 (71)
T ss_dssp EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEECccCCCcEEEEEEcC
Confidence 4678999999999998 99999999998 89999999999999999999999999984
No 4
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=7e-21 Score=127.53 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=52.0
Q ss_pred CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938 36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILI 89 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~r 89 (133)
-|+.|+|+++|||++| ++||+|||||+ +|||.+||.|+|++||||++||+|+||
T Consensus 7 i~~~G~V~~~l~~~~f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd~~kgrIi~R 70 (71)
T d1hr0w_ 7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYR 70 (71)
T ss_dssp CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSC
T ss_pred EEEEEEEEEECCCCEEEEEECCCCEEEEEecchhheeeEEecCCCEEEEEECccCCCcEEEEEc
Confidence 5889999999999998 99999999998 899999999999999999999999997
No 5
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.64 E-value=5.4e-05 Score=48.17 Aligned_cols=51 Identities=14% Similarity=-0.002 Sum_probs=39.8
Q ss_pred EEEEEEecCC---------ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 39 YAEVLRMLGN---------GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 39 ~g~V~~~lGn---------~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
-|.|++..|+ +.++.|+++|+||+ .+.+..||+|.+++.+ ...|-|...+.
T Consensus 4 ~G~Vi~~~~~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~--~~~g~I~~I~p 64 (66)
T d1u0la1 4 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLH 64 (66)
T ss_dssp EEEEEEEETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECC
T ss_pred eEEEEEEECCEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC--CCeEEEEEEcC
Confidence 4677777775 33489999999998 5779999999998763 55788887664
No 6
>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=97.62 E-value=6.2e-05 Score=48.05 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=39.4
Q ss_pred EEEEEEecCC-----------ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938 39 YAEVLRMLGN-----------GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT 91 (133)
Q Consensus 39 ~g~V~~~lGn-----------~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~ 91 (133)
.|+|+++.|| +.++.|+++|+||+ .+.+..||+|.+++.+ +..|-|...+-
T Consensus 3 ~G~Vik~~~~~y~V~~e~~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~--~~~g~I~~I~p 65 (67)
T d1t9ha1 3 EGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKE 65 (67)
T ss_dssp EEEEEEEETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECC
T ss_pred CEEEEEEECCEEEEEecccCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc--CCeEEEEEEec
Confidence 3667777665 44588999999998 6778899999999764 55788877653
No 7
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=81.91 E-value=1.2 Score=26.47 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=30.1
Q ss_pred eccCCCeE--EEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeee
Q 035938 31 IIKEEGQE--YAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 31 ~~p~e~e~--~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~ 78 (133)
..|+++.+ ...+++.||+..+ ..+++++... ++.|+.|-+.+.+
T Consensus 2 ~ip~~~~i~~~V~~vE~lG~et~v~~~~~~~~i~~~~~~~~~----~~~G~~v~l~~~~ 56 (71)
T d1g2914 2 RVPGENLVRAVVEIVENLGSERIVRLRVGGVTFVGSFRSESR----VREGVEVDVVFDM 56 (71)
T ss_dssp CCBTTTEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTCC----CCTTCEEEEEECG
T ss_pred ccCCCceEEEEEEEEEcccCeEEEEEEECCEEEEEEECCCCC----CCCCCEEEEEECc
Confidence 35666654 4456788998766 6666776665 6788888877755
No 8
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}
Probab=78.41 E-value=5.6 Score=24.80 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=37.5
Q ss_pred EEEEEEecCCceEEEEEeccccce-e---e--EeecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHH
Q 035938 39 YAEVLRMLGNGRLRLHWRHQAMHK-R---V--WIAAGDIILVGFRIYQDDKADVILINTPDEAKRL 98 (133)
Q Consensus 39 ~g~V~~~lGn~~~~la~IpGKmrk-r---i--WI~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L 98 (133)
-++|+++-|++..-.+-..|--|. + + .+++||||||.. |-.+.+..+++++.-
T Consensus 6 P~kVvei~~~~~~a~vd~~G~~r~v~l~lv~e~v~vGDyVLVH~-------G~Ai~~id~eeA~e~ 64 (76)
T d3d3ra1 6 PSQVVAVDNERQSVTVDTLGVRRDVSSHLMTEPLAIGDYVLIHI-------GFVMNKIDRNDALQS 64 (76)
T ss_dssp CEEEEEEETTTTEEEEEETTEEEEEECTTBSSCCCTTCEEEEEE-------EEEEEEECHHHHHHH
T ss_pred cEEEEEEcCCCcEEEEECCCeEEEEEEEeccCCCCCCCEEEEec-------chhhhhCCHHHHHHH
Confidence 367888877766666666665554 2 2 367899999974 677888888887764
No 9
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3 (RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.57 E-value=1.9 Score=27.42 Aligned_cols=50 Identities=22% Similarity=0.190 Sum_probs=35.9
Q ss_pred cCCC-eEEEEEEEecCCceE---------EEE--Eeccccce-eeEeecCCEEEEEeeeCCCC
Q 035938 33 KEEG-QEYAEVLRMLGNGRL---------RLH--WRHQAMHK-RVWIAAGDIILVGFRIYQDD 82 (133)
Q Consensus 33 p~e~-e~~g~V~~~lGn~~~---------~la--~IpGKmrk-riWI~~GD~VlV~~~~~~~~ 82 (133)
|..| -++|+|+...+++.+ .|. .+||.-++ +=.+..||.|.+.....+..
T Consensus 4 P~~GD~ViG~V~~~~~~~~~VdI~s~~~a~L~~~~f~g~~k~~r~~l~~GD~V~arV~~v~~~ 66 (88)
T d2nn6g1 4 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANKD 66 (88)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCTT
T ss_pred CCCCCEEEEEEEEEeCCeEEEEcCCCeeEEEeHHHcCccccccCcccCCCCEEEEEEEEeCCC
Confidence 5555 489999999998876 221 34555554 55689999999999887643
No 10
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=69.18 E-value=5.9 Score=24.20 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=39.5
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEeccccce--------eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQAMHK--------RVWIAAGDIILVGFRIYQDDKADVILIN 90 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~IpGKmrk--------riWI~~GD~VlV~~~~~~~~KgdIv~ry 90 (133)
.|..|+ +.|+|+.+..++.| -++|++-=... +=.++.||.|.+.-...+.. ++|..-.
T Consensus 4 ~Pk~Gdiv~G~V~~i~~~g~fV~i~~~~~gll~~s~~~~~~~~~~~~~~~~~~~Gd~v~~kV~~vd~~-~~i~LS~ 78 (87)
T d2je6i1 4 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSV 78 (87)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEEC
T ss_pred cCCCCCEEEEEEEEEECCEEEEEeCCCEEEEEehHHhCCceeccccccchhhcccceEEEEEEEECCC-CCEEEEE
Confidence 477665 79999999999887 44444421111 12478999999999887644 5665543
No 11
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=66.47 E-value=4.2 Score=26.00 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=28.6
Q ss_pred eeccC---CCeEEEEEEEecCCceEEEEEeccccceeeEeecCCEEEEEeee
Q 035938 30 LIIKE---EGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 30 l~~p~---e~e~~g~V~~~lGn~~~~la~IpGKmrkriWI~~GD~VlV~~~~ 78 (133)
+.+|+ +....|.|+. .|.+.+ .-.|....-+|+++||+|++....
T Consensus 27 IiLp~~~~~~~~~G~Vva-vG~g~~---~~~~~~~~~~~vk~GD~Vl~~~~~ 74 (99)
T d1p3ha_ 27 LVIPDTAKEKPQEGTVVA-VGPGRW---DEDGEKRIPLDVAEGDTVIYSKYG 74 (99)
T ss_dssp CBCCCSSCCSEEEEEEEE-ECCCEE---CSSSSCEECCSCCTTCEEEEECTT
T ss_pred eEeccccccCceEEEEEE-ECCceE---cCCCCEecCCeeecCCEEEEcccC
Confidence 45554 3457888887 454432 122334446799999999997643
No 12
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]}
Probab=60.26 E-value=7.6 Score=23.67 Aligned_cols=58 Identities=9% Similarity=0.082 Sum_probs=37.4
Q ss_pred eeccCCCe-EEEEEEEecCCceE------EEEEeccc-----c-c-----eeeEeecCCEEEEEeeeCCCCeEEEEE
Q 035938 30 LIIKEEGQ-EYAEVLRMLGNGRL------RLHWRHQA-----M-H-----KRVWIAAGDIILVGFRIYQDDKADVIL 88 (133)
Q Consensus 30 l~~p~e~e-~~g~V~~~lGn~~~------~la~IpGK-----m-r-----kriWI~~GD~VlV~~~~~~~~KgdIv~ 88 (133)
+-.|..|+ +.|+|+....++.| ..|.+|-. . + -+=.++.||.|.|.-...+.. +.|..
T Consensus 2 ~Y~Pk~GdvV~G~V~~v~~~g~fV~i~~~~~g~l~~se~~~~~~~~~~~~~~~~~~vGd~V~~kV~~vd~~-~~i~L 77 (88)
T d2z0sa1 2 IYVPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLL 77 (88)
T ss_dssp CCCCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEE
T ss_pred CcCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEehHHhCcccccccccchhhhcccCcEEEEEEEEECCC-CCEEE
Confidence 34577665 89999999998887 23333211 0 0 023578899999998887644 34554
No 13
>d2ja9a1 b.40.4.5 (A:62-151) S1-domain of exosome component 3 (RRP40) {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=59.98 E-value=16 Score=22.88 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=37.4
Q ss_pred cCC-CeEEEEEEEecCCceE---------EE-E--Eeccccce-eeEeecCCEEEEEeeeCCCC-eEEEE
Q 035938 33 KEE-GQEYAEVLRMLGNGRL---------RL-H--WRHQAMHK-RVWIAAGDIILVGFRIYQDD-KADVI 87 (133)
Q Consensus 33 p~e-~e~~g~V~~~lGn~~~---------~l-a--~IpGKmrk-riWI~~GD~VlV~~~~~~~~-KgdIv 87 (133)
|.. +-++|+|+...+++.+ .| . ..+|.-++ +=-+..||.|.+.....+.+ +-++.
T Consensus 5 P~~gD~ViG~V~~~~~~~~~vdI~~~~~~~L~~~~~f~g~~k~~r~~l~~GDlV~arV~~v~~~~~~~Ls 74 (90)
T d2ja9a1 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAEKELEAEIE 74 (90)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECCTTSCCEEE
T ss_pred CCCCCEEEEEEEEEeCCcEEEEcCCcchhhhhhhhccCccccccCCccCCCCEEEEEEEEECCCCCEEEE
Confidence 554 4589999999988776 22 1 13344444 55689999999999988644 44443
No 14
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=59.11 E-value=3.4 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.7
Q ss_pred eeEeecCCEEEEEeeeCCCCeEEEEEEcCHhH
Q 035938 63 RVWIAAGDIILVGFRIYQDDKADVILINTPDE 94 (133)
Q Consensus 63 riWI~~GD~VlV~~~~~~~~KgdIv~ry~~dq 94 (133)
++.|+.||.|.|---.+-...|.|+.++...+
T Consensus 39 ~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~ 70 (119)
T d1vqot1 39 NVRVNAGDTVEVLRGDFAGEEGEVINVDLDKA 70 (119)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEETTTT
T ss_pred ccceeCCCEEEEeecCCCCCcceEEEEECCCC
Confidence 69999999999976555567899999986543
No 15
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=58.29 E-value=8.3 Score=23.20 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=38.9
Q ss_pred eccCCCe-EEEEEEEecCCceE--------EEEEecccc-c-ee-----eEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938 31 IIKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQAM-H-KR-----VWIAAGDIILVGFRIYQDDKADVILI 89 (133)
Q Consensus 31 ~~p~e~e-~~g~V~~~lGn~~~--------~la~IpGKm-r-kr-----iWI~~GD~VlV~~~~~~~~KgdIv~r 89 (133)
.+|+.|+ +.|+|+.+...+.| .-|.+|-.- - .+ =.++.||.|.|.....+..++.|..-
T Consensus 7 ~~p~~G~iv~G~V~~v~~~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~LS 81 (84)
T d2ahob2 7 KLPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVS 81 (84)
T ss_dssp SSCCTTCCCEEEEEEEETTEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEEE
T ss_pred cCCCCCCEEEEEEEEEECCEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEEE
Confidence 3577776 78999999888877 123333211 1 01 11689999999998888777777653
No 16
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=55.55 E-value=2 Score=27.42 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=19.0
Q ss_pred EeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938 65 WIAAGDIILVGFRIYQDDKADVILINTPD 93 (133)
Q Consensus 65 WI~~GD~VlV~~~~~~~~KgdIv~ry~~d 93 (133)
-|..||+|+|++. .....|+|++.+..+
T Consensus 24 ~i~~Gd~viVd~~-~~~~~g~ivva~~~~ 51 (101)
T d1f39a_ 24 SFPDGMLILVDPE-QAVEPGDFCIARLGG 51 (101)
T ss_dssp CCCTTCEEEEETT-SCCCTTCEEEEECTT
T ss_pred CcCCCCEEEEEec-CccCCCCEEEEEECC
Confidence 4788999999875 344567777665443
No 17
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=54.88 E-value=9.5 Score=22.86 Aligned_cols=56 Identities=16% Similarity=0.125 Sum_probs=37.4
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEecc----ccce--eeEeecCCEEEEEeeeCCCCeEEEEE
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQ----AMHK--RVWIAAGDIILVGFRIYQDDKADVIL 88 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~IpG----Kmrk--riWI~~GD~VlV~~~~~~~~KgdIv~ 88 (133)
.|..|+ +.|+|+.+..++.| -++|++- .... +=+++.||.|.|.-...+.+ +.|..
T Consensus 2 ~Pk~Gd~V~G~V~~v~~~g~~V~i~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~~-~~i~L 72 (83)
T d2ba0a1 2 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPK-MKVTL 72 (83)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTT-CCEEE
T ss_pred cCCCCCEEEEEEEEEECCEEEEecCCCeeEEEecccccccccccChhhhcccccEEEEEEEEECCC-CCEEE
Confidence 366655 79999999999887 3444321 1111 34589999999998887643 45544
No 18
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.18 E-value=22 Score=21.35 Aligned_cols=58 Identities=14% Similarity=-0.020 Sum_probs=36.0
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEecc------ccce-eeEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQ------AMHK-RVWIAAGDIILVGFRIYQDDKADVILI 89 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~IpG------Kmrk-riWI~~GD~VlV~~~~~~~~KgdIv~r 89 (133)
.|+.|+ +.|+|+.+..++.| +-|.||- +... .=-+..||.|.|.....+..++.|..-
T Consensus 10 ~p~~G~iv~G~V~~i~~~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~LS 83 (86)
T d1kl9a2 10 FPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLS 83 (86)
T ss_dssp SCCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEEE
Confidence 466554 78999999888876 1222221 1111 122689999999998888777777653
No 19
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=50.77 E-value=3.2 Score=27.80 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.8
Q ss_pred cceeeEeecCCEEEEEeeeCCCCeEEEEEEcCHhH
Q 035938 60 MHKRVWIAAGDIILVGFRIYQDDKADVILINTPDE 94 (133)
Q Consensus 60 mrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~dq 94 (133)
+..++.|+.||.|.|--=.+-...|.|+.++...+
T Consensus 7 ~~~K~kikkGD~V~VisGkdKGk~G~Vl~V~~~~~ 41 (110)
T d2zjrr1 7 HNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQ 41 (110)
T ss_dssp TTSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTT
T ss_pred ccceeeeeCCCEEEEeecCCCCcceEEEEEECCCC
Confidence 34467799999999865444456899999996654
No 20
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.56 E-value=2.1 Score=27.19 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=36.1
Q ss_pred ccCCCe-EEEEEEEecCCceE--------EEEEeccc------cce---------eeEeecCCEEEEEeeeCCCCeEEEE
Q 035938 32 IKEEGQ-EYAEVLRMLGNGRL--------RLHWRHQA------MHK---------RVWIAAGDIILVGFRIYQDDKADVI 87 (133)
Q Consensus 32 ~p~e~e-~~g~V~~~lGn~~~--------~la~IpGK------mrk---------riWI~~GD~VlV~~~~~~~~KgdIv 87 (133)
.|+-|+ ++|+|+.+...+.+ -+.|++.- .|+ +=++++||.|.|..+..+.+ |.|.
T Consensus 5 ~P~vGdiV~G~V~~v~~~g~~V~I~~~~~g~l~is~i~~~~~~~rr~~~~~~~~~~~~~~~Gd~V~~kV~~v~~d-g~i~ 83 (95)
T d2nn6h1 5 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSD-GAVS 83 (95)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEETT-TEEE
T ss_pred cCCCCCEEEEEEEEEecCcEEEEeCCCceEEEEHHHccccccccccccchhhhhhhhhcccccEEEEEEEEECCC-CCEE
Confidence 366654 89999999998887 44444321 111 12489999999888877543 4444
No 21
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Probab=44.86 E-value=4.9 Score=25.42 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.7
Q ss_pred eeEeecCCEEEEEee
Q 035938 63 RVWIAAGDIILVGFR 77 (133)
Q Consensus 63 riWI~~GD~VlV~~~ 77 (133)
-.|+++||+|++..+
T Consensus 56 ~~~vk~GD~Vl~~~~ 70 (97)
T d1aono_ 56 PLDVKVGDIVIFNDG 70 (97)
T ss_dssp BCSCCTTCEEEECCC
T ss_pred cccCCCCCEEEEecc
Confidence 479999999999664
No 22
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=41.49 E-value=17 Score=23.18 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=34.9
Q ss_pred EEEEEEEecCCceEEEEEeccccce-eeE----------eecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHHH
Q 035938 38 EYAEVLRMLGNGRLRLHWRHQAMHK-RVW----------IAAGDIILVGFRIYQDDKADVILINTPDEAKRLK 99 (133)
Q Consensus 38 ~~g~V~~~lGn~~~~la~IpGKmrk-riW----------I~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L~ 99 (133)
+-++|+++-|+ .-+|.+.|--|. ++- ++.||||||.. |-.+.+..+++++.-.
T Consensus 5 IP~kV~~i~~~--~A~vd~~Gv~r~v~l~lv~~~~~~~e~~vGDyVLVH~-------G~Ai~~ideeeA~etl 68 (90)
T d2ot2a1 5 VPGQIRTIDGN--QAKVDVCGIQRDVDLTLVGSCDENGQPRVGQWVLVHV-------GFAMSVINEAEARDTL 68 (90)
T ss_dssp EEEEEEEECSS--EEEEECSSSEEEEECTTTCSBCTTSCBCTTCEEEEET-------TEEEEEECHHHHHHHH
T ss_pred ccEEEEEEcCC--EEEEEeCCcEEEEEEeccccccCCcccCCCCEEEEeh-------hHHHHhCCHHHHHHHH
Confidence 35788887654 455666654443 222 35699999973 5778888888877543
No 23
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=36.46 E-value=34 Score=19.39 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=22.5
Q ss_pred EEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeee
Q 035938 40 AEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 40 g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~ 78 (133)
+.+++.+|+..+ ..+++++... ++.|+.|-+.+.+
T Consensus 12 V~~vE~lG~et~v~~~~~~~~i~~~~~~~~~----~~~g~~i~l~~d~ 55 (70)
T d1v43a2 12 VDFVEALGTDTILHVKFGDELVKVKLPGHIP----IEPGREVKVIMDL 55 (70)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEESCCC----CCTTCEEEEEEEG
T ss_pred EEEEEcCCCCEEEEEEECCEEEEEEECCCCC----CCCCCEEEEEECc
Confidence 344566666554 4555555554 7788888888765
No 24
>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.78 E-value=31 Score=22.64 Aligned_cols=48 Identities=15% Similarity=-0.006 Sum_probs=29.0
Q ss_pred ccCCC-eEEEEEEEecCCceE--EEE--------Eeccc-----------cc--eeeEeecCCEEEEEeeeC
Q 035938 32 IKEEG-QEYAEVLRMLGNGRL--RLH--------WRHQA-----------MH--KRVWIAAGDIILVGFRIY 79 (133)
Q Consensus 32 ~p~e~-e~~g~V~~~lGn~~~--~la--------~IpGK-----------mr--kriWI~~GD~VlV~~~~~ 79 (133)
+|.-| -++|+|+.+.+..-+ ++| ++.|= .. .+=++++||+|.......
T Consensus 4 vP~vGDiVig~V~~v~~~~a~v~I~~v~~~~l~~~~~g~i~~~dvr~te~d~~~m~~~fr~GDiV~A~Vis~ 75 (125)
T d2nn6i1 4 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISL 75 (125)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEecCCEEEEEEeEecCcccccCccccccHHHcccchhhhhhHHHhcCCCCEEEEEEEEc
Confidence 56655 489999998776543 211 01111 11 135678999999887654
No 25
>d2ix0a1 b.40.4.5 (A:83-172) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=31.15 E-value=53 Score=20.03 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=20.5
Q ss_pred eecCCEEEEEeeeCC--CC---eEEEEEEcC
Q 035938 66 IAAGDIILVGFRIYQ--DD---KADVILINT 91 (133)
Q Consensus 66 I~~GD~VlV~~~~~~--~~---KgdIv~ry~ 91 (133)
.+.||+|+|+...|- .. .|+|+-++.
T Consensus 40 ak~Gd~Vvvei~~~P~~~~~~~~g~I~evlG 70 (90)
T d2ix0a1 40 FKEGDWAVAEMRRHPLKGDRSFYAELTQYIT 70 (90)
T ss_dssp CCTTCEEEEEEEECGGGTCSSCEEEEEEECC
T ss_pred CCCCCEEEEEEEeCCCCCCCCceEEEEEEEe
Confidence 558999999998873 22 699999984
No 26
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=30.58 E-value=19 Score=22.07 Aligned_cols=52 Identities=13% Similarity=0.044 Sum_probs=29.4
Q ss_pred CeEEEEEEEecCCceEEEEEeccccceeeEee--------cCCEEEEEeeeCCC-CeEEEEEEcC
Q 035938 36 GQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIA--------AGDIILVGFRIYQD-DKADVILINT 91 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~~la~IpGKmrkriWI~--------~GD~VlV~~~~~~~-~KgdIv~ry~ 91 (133)
..+.|+|.....+.=|+.+ .+ -.=|+|. .||.|+|...+... ..|+|+..+.
T Consensus 17 ~~~~G~i~~~~~G~GFv~~--d~--~~DifI~~~~~~~A~~GD~V~v~i~~~~~r~eg~I~~ilE 77 (79)
T d2ix0a2 17 PRAEGVVKATEKGFGFLEV--DA--QKSYFIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVE 77 (79)
T ss_dssp CEEEEEEECCC--CEEEEE--ET--TEEEEECHHHHTTCCTTCEEEEEEECC--CCEEEEEEEEE
T ss_pred CEEEEEEEEeCCCcEEEEE--CC--CCcEEECHHHHcCCCCCCEEEEEEEeCCCcEEEEEEEEec
Confidence 4566777665444334332 22 1345553 59999999876542 2588887653
No 27
>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli [TaxId: 562]}
Probab=30.41 E-value=54 Score=19.91 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=18.3
Q ss_pred EEEEeccccceeeEeecCCEEEEEe-eeCCCCe
Q 035938 52 RLHWRHQAMHKRVWIAAGDIILVGF-RIYQDDK 83 (133)
Q Consensus 52 ~la~IpGKmrkriWI~~GD~VlV~~-~~~~~~K 83 (133)
++||-|.- ..+.||.|.+.. +|....|
T Consensus 39 y~aHDe~~-----~~~~GD~V~I~e~rPlSK~K 66 (78)
T d2gy9q1 39 LHVHDENN-----ECGIGDVVEIRECRPLSKTK 66 (78)
T ss_dssp EEEECTTC-----CCCTTCEEEEEECSCSSSSC
T ss_pred EEEECCCC-----CCccccEEEEEEcCcCCCcE
Confidence 67777754 477999999865 4455444
No 28
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Probab=30.36 E-value=7.6 Score=24.48 Aligned_cols=43 Identities=16% Similarity=0.392 Sum_probs=26.8
Q ss_pred eeccCC---CeEEEEEEEecCCceEEEEEeccccceeeEeecCCEEEEEee
Q 035938 30 LIIKEE---GQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFR 77 (133)
Q Consensus 30 l~~p~e---~e~~g~V~~~lGn~~~~la~IpGKmrkriWI~~GD~VlV~~~ 77 (133)
+.+|+. .+.+|.|+.+ |.+.+ .....+--+|+++||+|++...
T Consensus 26 IiLp~~~~~k~~~g~Vvav-G~g~~----~~~g~~~p~~vkvGD~Vl~~~~ 71 (96)
T d1we3o_ 26 IVLPDTAKEKPQKGKVIAV-GTGRV----LENGQRVPLEVKEGDIVVFAKY 71 (96)
T ss_dssp CCCCTTTSCCCSEEEESCC-CCCEE----CTTSCEECCSCCTTCEEEECTT
T ss_pred EEecccccccceEEEEeee-cceEe----cCCCCEEEeeEEeCCEEEEccC
Confidence 566653 4567888764 44422 1222333579999999998754
No 29
>d2aama1 c.1.8.15 (A:28-312) Hypothetical protein TM1410 {Thermotoga maritima [TaxId: 2336]}
Probab=29.42 E-value=12 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=24.0
Q ss_pred CEEEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCC
Q 035938 70 DIILVGFRIYQDDKADVILINTPDEAKRLKNIGELP 105 (133)
Q Consensus 70 D~VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P 105 (133)
|+|+|++........ .|+++||+.|++.|..+
T Consensus 28 d~~ViD~~~~g~~~~----~~t~~~i~~L~~~g~~v 59 (285)
T d2aama1 28 EIAVIDYSKDGSESG----EYSPEEIKIMVDAGVVP 59 (285)
T ss_dssp SEEEECSBSSSSGGG----BCCHHHHHHHHHTTCEE
T ss_pred CEEEEcCCcCCCccc----cCCHHHHHHHHhCCCEE
Confidence 788888875433222 58999999999998655
No 30
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=28.90 E-value=9.9 Score=23.28 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=29.5
Q ss_pred EEEEEecCCceEEEEEeccccce-ee----EeecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHH
Q 035938 40 AEVLRMLGNGRLRLHWRHQAMHK-RV----WIAAGDIILVGFRIYQDDKADVILINTPDEAKRL 98 (133)
Q Consensus 40 g~V~~~lGn~~~~la~IpGKmrk-ri----WI~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L 98 (133)
++|+++-|+ +-+|-+.|--|. ++ =+++||||||.. |-.+.+.++++++..
T Consensus 6 ~~Vv~i~~~--~A~vd~~G~~r~v~l~lv~e~~vGDyVLVh~-------G~Ai~~id~eeA~e~ 60 (71)
T d2z1ca1 6 GKVIEVNGP--VAVVDFGGVKREVRLDLMPDTKPGDWVIVHT-------GFAIEKLDEKKAMEI 60 (71)
T ss_dssp EEEEEEETT--EEEEEETTEEEEEECTTSTTCCTTCEEEEET-------TEEEEEECHHHHHHH
T ss_pred EEEEEECCC--EEEEEcCCeEEEEEEEeeCCCCCCCEEEEee-------chhhhhCCHHHHHHH
Confidence 556665332 334444444333 11 257999999973 466777788877654
No 31
>d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=28.80 E-value=57 Score=20.44 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=26.3
Q ss_pred eEEEEEEEecCC---------ceE---EEEEeccccceeeE------eecCCEEEEE
Q 035938 37 QEYAEVLRMLGN---------GRL---RLHWRHQAMHKRVW------IAAGDIILVG 75 (133)
Q Consensus 37 e~~g~V~~~lGn---------~~~---~la~IpGKmrkriW------I~~GD~VlV~ 75 (133)
.+.|+|++...- +.+ .++-=.|..+-.+| +.+||+|.+.
T Consensus 16 ~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~i~~~~W~~~~~~l~~Gdvv~i~ 72 (115)
T d1o7ia_ 16 NVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIE 72 (115)
T ss_dssp EEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEE
T ss_pred EEEEEEEECCCCceeecCCCCEEEEEEEEEcCCCeEEEEEeccccccCCCCCEEEEe
Confidence 478888886542 222 44444577777788 8889988875
No 32
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.24 E-value=10 Score=25.86 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=19.6
Q ss_pred EEcCHhHHHHHHHcCCCCcccc
Q 035938 88 LINTPDEAKRLKNIGELPDGTR 109 (133)
Q Consensus 88 ~ry~~dqik~L~k~g~~P~~f~ 109 (133)
.+++++|+.+|+..++++++|.
T Consensus 65 lrFt~eei~yL~~~~~f~~~fl 86 (141)
T d1yira2 65 LAISDEQLAFLERIPFLAPDFI 86 (141)
T ss_dssp CCCCHHHHHHHHTSTTSCHHHH
T ss_pred CCCCHHHHHHHHcCCCCCHHHH
Confidence 4789999999999999998885
No 33
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]}
Probab=24.25 E-value=18 Score=22.01 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=15.7
Q ss_pred eeeEeecCCEEEEEeeeCC
Q 035938 62 KRVWIAAGDIILVGFRIYQ 80 (133)
Q Consensus 62 kriWI~~GD~VlV~~~~~~ 80 (133)
-.|||-+||.|+|-.+.-+
T Consensus 35 ANvligqg~~v~v~krkrd 53 (69)
T d2jdqd1 35 ANVLIGQGDVVLVMKRKRD 53 (69)
T ss_dssp EEEEEETTEEEEEEESCCC
T ss_pred ccEEEeCCCEEEEEEeccc
Confidence 3799999999999876543
No 34
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia coli [TaxId: 562]}
Probab=23.76 E-value=74 Score=19.25 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=22.6
Q ss_pred eEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938 64 VWIAAGDIILVGFRIYQDDKADVILI 89 (133)
Q Consensus 64 iWI~~GD~VlV~~~~~~~~KgdIv~r 89 (133)
-..+.||.|.|.....+..++.|+.+
T Consensus 59 ~~~~~Gd~V~V~v~~vd~~~r~I~~~ 84 (87)
T d2ix0a3 59 TVYKVTDVIDVTIAEVRMETRSIIAR 84 (87)
T ss_dssp EEEETTCEEEEEEEEEETTTTEEEEE
T ss_pred EEEECCCEEEEEEEEEecccCeEEEE
Confidence 45889999999999999888888864
No 35
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.57 E-value=17 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.1
Q ss_pred ceeeEeecCCEEEEEeee
Q 035938 61 HKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 61 rkriWI~~GD~VlV~~~~ 78 (133)
+.+-|++.||.|.++.+-
T Consensus 261 ~~~~~L~~GD~V~ie~~~ 278 (298)
T d1hyoa2 261 QTRTFLLDGDEVIITGHC 278 (298)
T ss_dssp CEESSCCTTCEEEEEEEE
T ss_pred CCcccCCCCCEEEEEEEE
Confidence 456799999999999873
No 36
>d1e32a1 b.52.2.3 (A:21-106) Membrane fusion ATPase p97 N-terminal domain , P97-Nn {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.29 E-value=9.4 Score=23.99 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=22.6
Q ss_pred EEEEeccccceeeEeecCCEEEEEeee
Q 035938 52 RLHWRHQAMHKRVWIAAGDIILVGFRI 78 (133)
Q Consensus 52 ~la~IpGKmrkriWI~~GD~VlV~~~~ 78 (133)
-..+|.|=.|+++-+..||.|.|.|-|
T Consensus 60 g~Irid~~~R~Nagv~iGD~V~V~p~p 86 (86)
T d1e32a1 60 EKIRMNRVVRNNLRVRLGDVISIQPCP 86 (86)
T ss_dssp SEEEECHHHHHHTTCCTTCEEEEEECT
T ss_pred CEEEecHHHHhhcCcCCCCEEEEEeCc
Confidence 456778888899999999999998854
No 37
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]}
Probab=21.90 E-value=17 Score=24.23 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.3
Q ss_pred EEcCHhHHHHHHHcCCCCcccc
Q 035938 88 LINTPDEAKRLKNIGELPDGTR 109 (133)
Q Consensus 88 ~ry~~dqik~L~k~g~~P~~f~ 109 (133)
.+++++|+++|++.+..+++|.
T Consensus 63 l~ft~eei~yL~~~~~~~~~fl 84 (137)
T d2f7fa2 63 LTFTESDIAYLREVEEYPEDFL 84 (137)
T ss_dssp CCCCHHHHHHHHHTSCCCHHHH
T ss_pred CCCCHHHHHHHHhCCCCCHHHH
Confidence 4789999999999999888875
No 38
>d1cz5a1 b.52.2.3 (A:1-91) N-terminal domain of VAT-N, VAT-Nn {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.51 E-value=37 Score=21.34 Aligned_cols=56 Identities=7% Similarity=0.012 Sum_probs=37.8
Q ss_pred CCeEEEEEEEecCCceE-EEEEeccccceeeEeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938 35 EGQEYAEVLRMLGNGRL-RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPD 93 (133)
Q Consensus 35 e~e~~g~V~~~lGn~~~-~la~IpGKmrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~d 93 (133)
.+.+.-+|.++.....- -+|+|+-.....+=+.+||+|.+.= .....-++|.-+++
T Consensus 4 ~~~i~L~V~ea~~~D~grgiari~~~~m~~Lgl~~GD~V~I~G---kr~t~a~v~~~~~~ 60 (91)
T d1cz5a1 4 NNGIILRVAEANSTDPGMSRVRLDESSRRLLDAEIGDVVEIEK---VRKTVGRVYRARPE 60 (91)
T ss_dssp CCEEEEEEECCSCCSCCSSEEEECHHHHHTTSCCTTCEEEEES---SSEEEEEEEECSST
T ss_pred CCeEEEEEeeecccccCCcEEEECHHHHHHcCCCCCCEEEEEc---CceEEEEEEecCcc
Confidence 45566777776644332 5688888888888999999999862 23356666665443
No 39
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.10 E-value=90 Score=19.24 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=32.9
Q ss_pred cCCCe-EEEEEEEecCCceE-------EEEEecc-----------cc-----ceeeEeecCCEEEEEeeeCCCCeEE
Q 035938 33 KEEGQ-EYAEVLRMLGNGRL-------RLHWRHQ-----------AM-----HKRVWIAAGDIILVGFRIYQDDKAD 85 (133)
Q Consensus 33 p~e~e-~~g~V~~~lGn~~~-------~la~IpG-----------Km-----rkriWI~~GD~VlV~~~~~~~~Kgd 85 (133)
|+-|| +-|+|+.+...|.| -++|++- .+ +..--++.||.|.|....-+..+.+
T Consensus 1 p~~gei~~g~V~~v~~~G~FVel~~ieGlv~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkV~~vd~~~~~ 77 (106)
T d1go3e1 1 PEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 77 (106)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred CCCCCEEEEEEEEEeeeEEEEEeeCeEEEEEeecccCceeeeccceeEEeecccccceeecceEEEEEEEEchhhcc
Confidence 45555 56888888888777 3344331 11 1124578999999998887766655
No 40
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}
Probab=20.80 E-value=78 Score=18.42 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=33.2
Q ss_pred CeEEEEEEEecCCceE----------EEEEeccccc-----eeeEeecCCEEEEEeeeC------CCCeEEEEEEcCH
Q 035938 36 GQEYAEVLRMLGNGRL----------RLHWRHQAMH-----KRVWIAAGDIILVGFRIY------QDDKADVILINTP 92 (133)
Q Consensus 36 ~e~~g~V~~~lGn~~~----------~la~IpGKmr-----kriWI~~GD~VlV~~~~~------~~~KgdIv~ry~~ 92 (133)
+.+.+.+..+.++... ...-+.|+.. +.+-+.+||.+.+.+... .+..+.++..|+|
T Consensus 26 ~~~~~~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~~~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v~~P 103 (105)
T d1v70a_ 26 ERMLYDLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAP 103 (105)
T ss_dssp TTEEEEEEEECTTCEEEEECCSSCEEEEEEEESCEEEEETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEEEES
T ss_pred CCEEEEEEEECCCCCCcceECCCCeEEEEEEeeEEEEEEeeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEEECC
Confidence 3455555555554332 4455667655 357788999888866331 2345666666654
No 41
>d2vnud1 b.40.4.5 (D:400-494) Exosome complex exonuclease RRP44 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=20.42 E-value=91 Score=19.03 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=27.2
Q ss_pred ecCCEEEEEeeeCCCC----eEEEEEEc-----CHhHHHHHHHcCCCC
Q 035938 67 AAGDIILVGFRIYQDD----KADVILIN-----TPDEAKRLKNIGELP 105 (133)
Q Consensus 67 ~~GD~VlV~~~~~~~~----KgdIv~ry-----~~dqik~L~k~g~~P 105 (133)
..|+.|+|+...|... .|.|+.++ ..-|+..+...--+|
T Consensus 45 ~~g~~Vvv~I~~w~~~~~~P~G~i~~vLG~~gd~~~e~~~il~~~~ip 92 (95)
T d2vnud1 45 LLDKRIVISIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVE 92 (95)
T ss_dssp GTTEEEEEEEEECCTTCSSCEEEEEEEEEESSCSHHHHHHHHHHTTCC
T ss_pred hCCCEEEEEEeecCCCCCCCCEEEEEEecCCCCcHHHHHHHHHHcCCC
Confidence 3599999999877533 79999998 345565555544444
No 42
>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus thermophilus [TaxId: 274]}
Probab=20.03 E-value=72 Score=20.29 Aligned_cols=36 Identities=14% Similarity=0.064 Sum_probs=22.3
Q ss_pred EEEEeccccceeeEeecCCEEEEEe-eeCCCCeE----EEEEEcCH
Q 035938 52 RLHWRHQAMHKRVWIAAGDIILVGF-RIYQDDKA----DVILINTP 92 (133)
Q Consensus 52 ~la~IpGKmrkriWI~~GD~VlV~~-~~~~~~Kg----dIv~ry~~ 92 (133)
++||-|.- ..+.||.|.+.. +|....|. +|+.+-..
T Consensus 41 ~~vHD~~n-----~~k~GD~V~I~e~rPlSK~K~~~v~~Iv~ka~~ 81 (100)
T d2uubq1 41 YLAHDPEE-----KYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 81 (100)
T ss_dssp EEEECTTC-----CCCTTCEEEEEEEEEEETTEEEEEEEEEECCCH
T ss_pred EEEECCCC-----CCCCCCEEEEEECcCCCCceEEEEEEEEeccCC
Confidence 66776643 377999998765 55665553 45544443
Done!