BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035942
         (53 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
           discoideum GN=trappc1-1 PE=3 SV=1
          Length = 142

 Score = 35.8 bits (81), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 3   FHSSHTHTYKL-------CFMIILVTHARTGGQRESLKCIYN-LYVESIDKNPLYSPGT 53
           FH   T TYKL       C   I+++       R+ LK IY+ ++VE + KNP+Y  GT
Sbjct: 61  FHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGT 119


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,293,775
Number of Sequences: 539616
Number of extensions: 515785
Number of successful extensions: 993
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 2
length of query: 53
length of database: 191,569,459
effective HSP length: 26
effective length of query: 27
effective length of database: 177,539,443
effective search space: 4793564961
effective search space used: 4793564961
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)