Query 035942
Match_columns 53
No_of_seqs 103 out of 260
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 13:08:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_C Trafficking protein par 99.8 6.6E-21 2.3E-25 116.8 6.2 52 2-53 60-119 (145)
2 3cue_C Transport protein parti 99.8 2.7E-19 9.2E-24 111.3 7.3 52 1-52 65-129 (159)
3 2j3t_D Trafficking protein par 99.8 1.2E-18 4.2E-23 113.7 7.3 52 2-53 133-191 (219)
4 3cue_A Transport protein parti 99.8 1.5E-18 5.1E-23 113.5 7.0 52 2-53 118-200 (219)
5 2j3w_A Sedlin, trafficking pro 99.6 3.9E-15 1.3E-19 90.5 6.9 50 3-53 64-121 (142)
6 3pr6_A Trapp-associated protei 97.7 7.6E-05 2.6E-09 46.8 5.0 47 6-53 72-134 (162)
7 2vx8_A Nucleoporin-like protei 79.1 8 0.00027 23.5 6.0 34 4-37 86-127 (169)
8 2nut_C Vesicle-trafficking pro 79.1 7.9 0.00027 23.5 6.0 34 4-37 53-94 (196)
9 3kyq_A YKT6, synaptobrevin hom 77.2 9 0.00031 23.8 5.9 36 4-39 58-102 (199)
10 4b93_A Vesicle-associated memb 76.3 11 0.00036 23.0 6.1 34 4-37 44-85 (189)
11 3bw6_A Synaptobrevin homolog Y 74.0 11 0.00037 22.0 6.0 34 4-37 61-103 (144)
12 4afi_A AP-3 complex subunit de 58.2 28 0.00097 21.1 6.1 34 4-37 96-137 (173)
13 2wx3_A MRNA-decapping enzyme 1 56.7 7.1 0.00024 20.1 1.9 18 28-45 27-44 (51)
14 2jtt_C Calcyclin-binding prote 40.8 14 0.00049 17.4 1.4 13 25-37 5-17 (35)
15 2vkj_A TM1634; membrane protei 37.7 21 0.00071 20.7 2.1 22 31-52 15-44 (106)
16 2wx4_A DCP1, decapping protein 37.0 14 0.00047 18.6 1.1 16 29-44 26-41 (46)
17 3pk1_B Apoptosis regulator BAX 35.3 13 0.00045 17.6 0.8 19 19-37 3-21 (34)
18 3vjz_A DMP19, putative unchara 33.3 16 0.00054 22.7 1.1 18 31-48 64-81 (166)
19 1s7z_A Gene 0.3 protein; all h 28.2 55 0.0019 19.2 2.8 19 23-41 73-93 (117)
20 2agh_C Zinc finger protein HRX 28.0 11 0.00038 17.3 -0.2 8 40-47 12-19 (31)
21 1srv_A Protein (groel (HSP60 c 26.9 31 0.0011 20.9 1.7 19 17-35 28-46 (145)
22 1m5q_A SMAP3, small nuclear ri 26.6 23 0.00078 20.7 1.0 25 21-45 104-128 (130)
23 2k1h_A Uncharacterized protein 25.6 92 0.0031 17.2 3.5 29 17-45 60-88 (94)
24 3j27_B Matrix protein, small e 23.9 19 0.00064 19.5 0.2 21 26-50 23-43 (75)
25 1p58_D Envelope protein M; fla 22.2 17 0.00059 19.7 -0.1 21 26-50 23-43 (75)
26 2bye_A Phospholipase C, epsilo 21.8 85 0.0029 18.1 2.8 29 9-37 8-43 (110)
27 2guk_A Hypothetical protein PG 21.4 51 0.0017 19.5 1.8 19 19-37 4-22 (120)
No 1
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=99.83 E-value=6.6e-21 Score=116.81 Aligned_cols=52 Identities=40% Similarity=0.595 Sum_probs=49.8
Q ss_pred ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHH-HHhHhhhhcCCCCCCCC
Q 035942 2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIY-NLYVESIDKNPLYSPGT 53 (53)
Q Consensus 2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY-~~YvdyV~KNPfy~~~~ 53 (53)
+|++++|++||+||| ||++||++.++++++|++|| ++|+|||||||||++|+
T Consensus 60 ~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~ 119 (145)
T 2j3t_C 60 GFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQ 119 (145)
T ss_dssp CEEEEECSSCEEEEEECTTSCEEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTS
T ss_pred ceEEEecCCEEEEEEEcCCCCEEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 689999999999999 99999999999999999999 59999999999999874
No 2
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-19 Score=111.30 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=49.6
Q ss_pred CceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHH-HhHhhhhcCC-----CCCCC
Q 035942 1 CLFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYN-LYVESIDKNP-----LYSPG 52 (53)
Q Consensus 1 ~~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~-~YvdyV~KNP-----fy~~~ 52 (53)
++|++++|++||+|+| ||++||++.++++++|++||+ +|+|||+||| ||++|
T Consensus 65 ~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~ 129 (159)
T 3cue_C 65 NDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE 129 (159)
T ss_dssp CCEEEEECSSCBEEEECCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred CCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 4799999999999999 999999999999999999998 9999999999 88776
No 3
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=99.76 E-value=1.2e-18 Score=113.75 Aligned_cols=52 Identities=29% Similarity=0.451 Sum_probs=50.2
Q ss_pred ceeEEEeCCeEEEEE-------EEEeeCCCCccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942 2 LFHSSHTHTYKLCFM-------IILVTHARTGGQRESLKCIYNLYVESIDKNPLYSPGT 53 (53)
Q Consensus 2 ~f~s~~T~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~~YvdyV~KNPfy~~~~ 53 (53)
+|++++|++||+||| ||++||++.++++++|++||++|+|||||||||++|+
T Consensus 133 g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~IyelYvd~V~kNPFY~~~~ 191 (219)
T 2j3t_D 133 GIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDFALKNPFYSLEM 191 (219)
T ss_dssp SCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHHHHHHHHHTTCTTCCTTS
T ss_pred CeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 688999999999999 9999999999999999999999999999999999874
No 4
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.5e-18 Score=113.51 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=49.6
Q ss_pred ceeEEEeCCeEEEEE-------EEEeeCCCC------------------------ccHHHHHHHHHHHhHhhhhcCCCCC
Q 035942 2 LFHSSHTHTYKLCFM-------IILVTHART------------------------GGQRESLKCIYNLYVESIDKNPLYS 50 (53)
Q Consensus 2 ~f~s~~T~~yklh~~-------Fvl~td~~~------------------------~~~~~~L~~iY~~YvdyV~KNPfy~ 50 (53)
+|++++|++|++||| |||++|+.. ++++++|++||++|||||||||||+
T Consensus 118 g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~ 197 (219)
T 3cue_A 118 GLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYS 197 (219)
T ss_dssp SCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 689999999999999 999999998 7899999999999999999999999
Q ss_pred CCC
Q 035942 51 PGT 53 (53)
Q Consensus 51 ~~~ 53 (53)
+|+
T Consensus 198 ~~~ 200 (219)
T 3cue_A 198 MEM 200 (219)
T ss_dssp TTS
T ss_pred CCC
Confidence 874
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.59 E-value=3.9e-15 Score=90.48 Aligned_cols=50 Identities=18% Similarity=0.445 Sum_probs=45.6
Q ss_pred eeEEEeCCeEEEEE-------EEEeeCC-CCccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942 3 FHSSHTHTYKLCFM-------IILVTHA-RTGGQRESLKCIYNLYVESIDKNPLYSPGT 53 (53)
Q Consensus 3 f~s~~T~~yklh~~-------Fvl~td~-~~~~~~~~L~~iY~~YvdyV~KNPfy~~~~ 53 (53)
+....++.|++|+| ||+++|+ +.++++++|++||++|+|+|+ ||||++|+
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~ 121 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNS 121 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHHHH-STTCCTTC
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHHHHHHHHHhc-CCCCCCCC
Confidence 35667899999999 9999999 489999999999999999999 99999874
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=97.66 E-value=7.6e-05 Score=46.78 Aligned_cols=47 Identities=15% Similarity=0.319 Sum_probs=37.6
Q ss_pred EEeCCeEEEEE--------EEEeeCCC------C--ccHHHHHHHHHHHhHhhhhcCCCCCCCC
Q 035942 6 SHTHTYKLCFM--------IILVTHAR------T--GGQRESLKCIYNLYVESIDKNPLYSPGT 53 (53)
Q Consensus 6 ~~T~~yklh~~--------Fvl~td~~------~--~~~~~~L~~iY~~YvdyV~KNPfy~~~~ 53 (53)
+.++.++...| ||+..|.+ . .+++.+.++++++|++ ++-||||.+++
T Consensus 72 ~~~e~~~VYGy~iTnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk-~l~NPFy~~~d 134 (162)
T 3pr6_A 72 FQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEAINQIFETVRKIYIR-VKCNPLLVSGD 134 (162)
T ss_dssp EEETTEEEEEEECTTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHH-HHTCTTGGGSC
T ss_pred eecCCeEEEEEEEcCCceEEEEEEccCCcccccchHHHHHHHHHHHHHHHHH-HhcCCCCCCCc
Confidence 45678888877 88877653 1 5788899999999999 77899999864
No 7
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=79.12 E-value=8 Score=23.47 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=26.9
Q ss_pred eEEEeCCeEEEEE------EEEeeCCCCcc--HHHHHHHHHH
Q 035942 4 HSSHTHTYKLCFM------IILVTHARTGG--QRESLKCIYN 37 (53)
Q Consensus 4 ~s~~T~~yklh~~------Fvl~td~~~~~--~~~~L~~iY~ 37 (53)
.+++.+.|.+|++ |++++|..-+. .-..|.+|-+
T Consensus 86 ~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~ 127 (169)
T 2vx8_A 86 LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 127 (169)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHH
Confidence 5788999999999 99999998773 4556666655
No 8
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=79.12 E-value=7.9 Score=23.46 Aligned_cols=34 Identities=6% Similarity=0.040 Sum_probs=27.1
Q ss_pred eEEEeCCeEEEEE------EEEeeCCCCc--cHHHHHHHHHH
Q 035942 4 HSSHTHTYKLCFM------IILVTHARTG--GQRESLKCIYN 37 (53)
Q Consensus 4 ~s~~T~~yklh~~------Fvl~td~~~~--~~~~~L~~iY~ 37 (53)
.+++.+.|..|+. |+++||.+.+ -.-.+|.+|-+
T Consensus 53 ~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~ 94 (196)
T 2nut_C 53 CTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHS 94 (196)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHH
Confidence 5788999999987 8999999877 33566777766
No 9
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=77.18 E-value=9 Score=23.75 Aligned_cols=36 Identities=8% Similarity=0.080 Sum_probs=27.1
Q ss_pred eEEEeCCeEEEEE-------EEEeeCCCCc--cHHHHHHHHHHHh
Q 035942 4 HSSHTHTYKLCFM-------IILVTHARTG--GQRESLKCIYNLY 39 (53)
Q Consensus 4 ~s~~T~~yklh~~-------Fvl~td~~~~--~~~~~L~~iY~~Y 39 (53)
.+++.+.|..|++ ++++||.+-+ -.-..|.+|-+-|
T Consensus 58 ~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF 102 (199)
T 3kyq_A 58 ASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEF 102 (199)
T ss_dssp EEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 4788999999965 8999999877 3355666666633
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=76.27 E-value=11 Score=22.98 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=25.9
Q ss_pred eEEEeCCeEEEEE------EEEeeCCCCcc--HHHHHHHHHH
Q 035942 4 HSSHTHTYKLCFM------IILVTHARTGG--QRESLKCIYN 37 (53)
Q Consensus 4 ~s~~T~~yklh~~------Fvl~td~~~~~--~~~~L~~iY~ 37 (53)
.+++.+.|..|+. |+++||.+-+. .-..|.+|-+
T Consensus 44 ~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~ 85 (189)
T 4b93_A 44 LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 85 (189)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence 5789999999988 99999998763 3445555554
No 11
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=73.96 E-value=11 Score=22.01 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=25.8
Q ss_pred eEEEeCCeEEEEE-------EEEeeCCCCcc--HHHHHHHHHH
Q 035942 4 HSSHTHTYKLCFM-------IILVTHARTGG--QRESLKCIYN 37 (53)
Q Consensus 4 ~s~~T~~yklh~~-------Fvl~td~~~~~--~~~~L~~iY~ 37 (53)
.+++.+.|..|++ +++++|.+-+. .-.+|.+|-+
T Consensus 61 ~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~ 103 (144)
T 3bw6_A 61 QSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILD 103 (144)
T ss_dssp EEEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHH
Confidence 5889999999999 89999998772 2344555544
No 12
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=58.22 E-value=28 Score=21.07 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=24.9
Q ss_pred eEEEeCCeEEEEE------EEEeeCCCCcc--HHHHHHHHHH
Q 035942 4 HSSHTHTYKLCFM------IILVTHARTGG--QRESLKCIYN 37 (53)
Q Consensus 4 ~s~~T~~yklh~~------Fvl~td~~~~~--~~~~L~~iY~ 37 (53)
.+++.+.|..|++ |++++|.+.+. .-..|.+|-+
T Consensus 96 ~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 96 LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 137 (173)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence 5788999999999 89999998763 2334444443
No 13
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=56.66 E-value=7.1 Score=20.08 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHhhhhc
Q 035942 28 QRESLKCIYNLYVESIDK 45 (53)
Q Consensus 28 ~~~~L~~iY~~YvdyV~K 45 (53)
-.+.|++||++|+.-..+
T Consensus 27 D~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 367899999999986544
No 14
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=40.84 E-value=14 Score=17.37 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.2
Q ss_pred CccHHHHHHHHHH
Q 035942 25 TGGQRESLKCIYN 37 (53)
Q Consensus 25 ~~~~~~~L~~iY~ 37 (53)
..++.+++++||+
T Consensus 5 ~~~l~~~fk~iY~ 17 (35)
T 2jtt_C 5 SEGLMNVLKKIYE 17 (35)
T ss_dssp CCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHh
Confidence 3468899999985
No 15
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=37.73 E-value=21 Score=20.66 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=16.1
Q ss_pred HHHHHHHHhH--------hhhhcCCCCCCC
Q 035942 31 SLKCIYNLYV--------ESIDKNPLYSPG 52 (53)
Q Consensus 31 ~L~~iY~~Yv--------dyV~KNPfy~~~ 52 (53)
=|.+.|++|+ |||-||-+-+.+
T Consensus 15 Kl~KAYElYvfs~~~~F~~YV~kn~Lkel~ 44 (106)
T 2vkj_A 15 KTLKAYELYIFSDYENFENYVKKEGLKIEG 44 (106)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhccccHHHHHHHHHcCcchhh
Confidence 3556788777 899999876543
No 16
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=37.03 E-value=14 Score=18.60 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHhhhh
Q 035942 29 RESLKCIYNLYVESID 44 (53)
Q Consensus 29 ~~~L~~iY~~YvdyV~ 44 (53)
.+.+.+||++|+.-+.
T Consensus 26 ~~Fl~~iHeAYl~sl~ 41 (46)
T 2wx4_A 26 KEFANKLHKAYLNGCS 41 (46)
T ss_dssp TTHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678899999987543
No 17
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=35.32 E-value=13 Score=17.59 Aligned_cols=19 Identities=32% Similarity=0.212 Sum_probs=12.5
Q ss_pred EeeCCCCccHHHHHHHHHH
Q 035942 19 LVTHARTGGQRESLKCIYN 37 (53)
Q Consensus 19 l~td~~~~~~~~~L~~iY~ 37 (53)
+.+||++..+.+.|++|=.
T Consensus 3 ~~~Dp~~K~l~~cL~~IgD 21 (34)
T 3pk1_B 3 VPQDASTKKLSECLKRIGD 21 (34)
T ss_dssp ----CTHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHH
Confidence 3578999999999988843
No 18
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=33.25 E-value=16 Score=22.71 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHHhHhhhhcCCC
Q 035942 31 SLKCIYNLYVESIDKNPL 48 (53)
Q Consensus 31 ~L~~iY~~YvdyV~KNPf 48 (53)
..+-|+.-|-+||.+|||
T Consensus 64 FvQLI~NGyG~~if~Np~ 81 (166)
T 3vjz_A 64 FVQLIASGYGEYIFRNPL 81 (166)
T ss_dssp HHHHHHHSCHHHHHTSSH
T ss_pred hHhhhhcCchhHHHhChH
Confidence 345566689999999997
No 19
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Probab=28.16 E-value=55 Score=19.16 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=13.3
Q ss_pred CCCccHHHHHH-HHHH-HhHh
Q 035942 23 ARTGGQRESLK-CIYN-LYVE 41 (53)
Q Consensus 23 ~~~~~~~~~L~-~iY~-~Yvd 41 (53)
|++.++..+|+ +||+ +|.|
T Consensus 73 pdtkDV~~ILqaRIyE~L~nd 93 (117)
T 1s7z_A 73 PDTKDVIRILQARIYEQLTID 93 (117)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 34666777776 7898 8776
No 20
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=28.01 E-value=11 Score=17.32 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=6.1
Q ss_pred HhhhhcCC
Q 035942 40 VESIDKNP 47 (53)
Q Consensus 40 vdyV~KNP 47 (53)
.|+|+||-
T Consensus 12 mdfvlknt 19 (31)
T 2agh_C 12 MDFVLKNT 19 (31)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhCC
Confidence 57899884
No 21
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=26.94 E-value=31 Score=20.87 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.0
Q ss_pred EEEeeCCCCccHHHHHHHH
Q 035942 17 IILVTHARTGGQRESLKCI 35 (53)
Q Consensus 17 Fvl~td~~~~~~~~~L~~i 35 (53)
+||+||....+++++|--+
T Consensus 28 ~ILitdkKIs~i~~llP~L 46 (145)
T 1srv_A 28 FILIVEKKVSNVRELLPIL 46 (145)
T ss_dssp EEEEESSEECCHHHHHHHH
T ss_pred EEEEecccccCHHHHHHHH
Confidence 8999999999998887543
No 22
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=26.61 E-value=23 Score=20.75 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=17.1
Q ss_pred eCCCCccHHHHHHHHHHHhHhhhhc
Q 035942 21 THARTGGQRESLKCIYNLYVESIDK 45 (53)
Q Consensus 21 td~~~~~~~~~L~~iY~~YvdyV~K 45 (53)
|..++.+--.+.+++|++|-+|+-+
T Consensus 104 ~~~gveg~g~~a~r~~~~~~~~~~~ 128 (130)
T 1m5q_A 104 SEIGVEGVGPVAERAKRLFEEFLKR 128 (130)
T ss_dssp ETTEEECCSHHHHHHHHHHHHHC--
T ss_pred eccccccCChHHHHHHHHHHHHHHh
Confidence 4445566677888889888888743
No 23
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=25.61 E-value=92 Score=17.19 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.4
Q ss_pred EEEeeCCCCccHHHHHHHHHHHhHhhhhc
Q 035942 17 IILVTHARTGGQRESLKCIYNLYVESIDK 45 (53)
Q Consensus 17 Fvl~td~~~~~~~~~L~~iY~~YvdyV~K 45 (53)
||-+|-.+..+++++..+|.+...||.+.
T Consensus 60 FITVtK~~~~dW~~ikp~I~~~I~~~~~~ 88 (94)
T 2k1h_A 60 FISIDKEDNANWNELLPQIENTFAKSNLE 88 (94)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88898888889999999999988888764
No 24
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=23.95 E-value=19 Score=19.51 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=13.5
Q ss_pred ccHHHHHHHHHHHhHhhhhcCCCCC
Q 035942 26 GGQRESLKCIYNLYVESIDKNPLYS 50 (53)
Q Consensus 26 ~~~~~~L~~iY~~YvdyV~KNPfy~ 50 (53)
++.++-|.++= ..|+|||.+.
T Consensus 23 ~~~~~~l~rvE----~WilrNp~~a 43 (75)
T 3j27_B 23 EGAWKHAQRIE----TWILRHPGFT 43 (75)
T ss_dssp HHHHHHHHHHH----HHHHHCCTHH
T ss_pred chHHHHHHHHH----HHHHHChHHH
Confidence 34455555554 4689999864
No 25
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=22.23 E-value=17 Score=19.68 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHhHhhhhcCCCCC
Q 035942 26 GGQRESLKCIYNLYVESIDKNPLYS 50 (53)
Q Consensus 26 ~~~~~~L~~iY~~YvdyV~KNPfy~ 50 (53)
++.++-|.++= ..|+|||.+.
T Consensus 23 ~~~~~~l~kvE----~WilrNp~~a 43 (75)
T 1p58_D 23 EGAWKHAQRIE----TWILRHPGFT 43 (75)
T ss_pred chHHHHHHHHH----HHHHHChHHH
Confidence 44555566554 4689999764
No 26
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.80 E-value=85 Score=18.15 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCeEEEEE-------EEEeeCCCCccHHHHHHHHHH
Q 035942 9 HTYKLCFM-------IILVTHARTGGQRESLKCIYN 37 (53)
Q Consensus 9 ~~yklh~~-------Fvl~td~~~~~~~~~L~~iY~ 37 (53)
++|++..+ |.++.-+.....+++|+++..
T Consensus 8 ~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ 43 (110)
T 2bye_A 8 QTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILT 43 (110)
T ss_dssp CCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHC
T ss_pred cEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHH
Confidence 46777777 888888889999999999875
No 27
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=21.41 E-value=51 Score=19.50 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.5
Q ss_pred EeeCCCCccHHHHHHHHHH
Q 035942 19 LVTHARTGGQRESLKCIYN 37 (53)
Q Consensus 19 l~td~~~~~~~~~L~~iY~ 37 (53)
+.+|....+++-+.++|||
T Consensus 4 ~~~~~~~~~mkVf~hhIYE 22 (120)
T 2guk_A 4 MDTQTLNSDLRVFMHHIYE 22 (120)
T ss_dssp ---CCSCHHHHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHH
Confidence 4677788899999999997
Done!