AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>035945
MKCQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVK
FDKWESSECSPLHITLVLASAFWDLFVIKWRKQFNLGKFIIELRKIFPTGSVMMWQLSL
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G54270 AT3G54270 AT3G54270	protein from Arabidopsis thaliana	5.8e-14
BLAST match view associations BLAST with AT2G35840 AT2G35840 AT2G35840	protein from Arabidopsis thaliana	6.8e-12
BLAST match view associations BLAST with SPP1 SPP1 SPP1 AT1G51420	protein from Arabidopsis thaliana	1.4e-11
BLAST match view associations BLAST with SPP2 SPP2 SPP2 AT3G52340	protein from Arabidopsis thaliana	8.3e-11
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035945
        (119 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2080295 - symbol:AT3G54270 species:3702 "Arabi...   187  5.8e-14   1
TAIR|locus:2039295 - symbol:AT2G35840 species:3702 "Arabi...   168  6.8e-12   1
TAIR|locus:2033893 - symbol:SPP1 "sucrose-phosphatase 1" ...   165  1.4e-11   1
TAIR|locus:2100544 - symbol:SPP2 "sucrose-6F-phosphate ph...   158  8.3e-11   1


>TAIR|locus:2080295 [details] [associations]
            symbol:AT3G54270 species:3702 "Arabidopsis thaliana"
            [GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005986 "sucrose biosynthetic process"
            evidence=IEA;ISS] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0016791 "phosphatase activity" evidence=IEA] [GO:0050307
            "sucrose-phosphate phosphatase activity" evidence=IEA;ISS]
            InterPro:IPR006378 InterPro:IPR006379 InterPro:IPR012847
            InterPro:IPR013679 Pfam:PF08472 UniPathway:UPA00371 Pfam:PF05116
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000287
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            GO:GO:0016311 EMBL:AL132957 eggNOG:COG0561 TIGRFAMs:TIGR01484
            GO:GO:0005986 InterPro:IPR006380 TIGRFAMs:TIGR01482
            HOGENOM:HOG000272726 ProtClustDB:PLN02382 GO:GO:0050307
            TIGRFAMs:TIGR01485 EMBL:AF434711 IPI:IPI00519388 PIR:T47586
            RefSeq:NP_190995.2 UniGene:At.27489 ProteinModelPortal:Q93WU4
            SMR:Q93WU4 STRING:Q93WU4 EnsemblPlants:AT3G54270.1 GeneID:824594
            KEGG:ath:AT3G54270 TAIR:At3g54270 InParanoid:Q9M379 OMA:IFHASER
            PhylomeDB:Q93WU4 Genevestigator:Q93WU4 Uniprot:Q93WU4
        Length = 425

 Score = 187 (70.9 bits), Expect = 5.8e-14, P = 5.8e-14
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query:     1 MKCQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVK 60
             +K  +  LGI  HPSG E+ +H+ +D MENLYGD + K++R+W+D V+S+ I  D WL K
Sbjct:   314 LKSLSSPLGIFVHPSGVEKPIHEWIDEMENLYGDGKEKKFRIWLDNVTSSHISSDTWLAK 373

Query:    61 FDKWESSE 68
             F K E SE
Sbjct:   374 FVKHELSE 381


>TAIR|locus:2039295 [details] [associations]
            symbol:AT2G35840 species:3702 "Arabidopsis thaliana"
            [GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0005986 "sucrose
            biosynthetic process" evidence=IEA;ISS] [GO:0008152 "metabolic
            process" evidence=IEA] [GO:0016791 "phosphatase activity"
            evidence=IEA] [GO:0050307 "sucrose-phosphate phosphatase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] InterPro:IPR006378 InterPro:IPR006379
            InterPro:IPR012847 InterPro:IPR013679 Pfam:PF08472
            UniPathway:UPA00371 Pfam:PF05116 GO:GO:0005829 GO:GO:0009506
            GO:GO:0005634 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0000287 Gene3D:3.40.50.1000 InterPro:IPR023214
            SUPFAM:SSF56784 GO:GO:0016311 EMBL:AC007017 eggNOG:COG0561
            TIGRFAMs:TIGR01484 GO:GO:0005986 InterPro:IPR006380
            TIGRFAMs:TIGR01482 HOGENOM:HOG000272726 ProtClustDB:PLN02382
            GO:GO:0050307 TIGRFAMs:TIGR01485 EMBL:AY054474 EMBL:AY114634
            EMBL:AF283565 EMBL:AY735594 EMBL:AY954816 IPI:IPI00518890
            PIR:F84773 RefSeq:NP_001189687.1 RefSeq:NP_565828.1
            RefSeq:NP_973609.1 UniGene:At.14226 ProteinModelPortal:Q9SJ66
            SMR:Q9SJ66 STRING:Q9SJ66 PaxDb:Q9SJ66 PRIDE:Q9SJ66 ProMEX:Q9SJ66
            DNASU:818157 EnsemblPlants:AT2G35840.1 EnsemblPlants:AT2G35840.2
            EnsemblPlants:AT2G35840.3 GeneID:818157 KEGG:ath:AT2G35840
            TAIR:At2g35840 InParanoid:Q940K7 OMA:GDKQGKK PhylomeDB:Q9SJ66
            Genevestigator:Q9SJ66 Uniprot:Q9SJ66
        Length = 422

 Score = 168 (64.2 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 28/65 (43%), Positives = 41/65 (63%)

Query:     1 MKCQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVK 60
             +K   +  G+  HPSGTE+S+   +D +   +GDKQGK++RVW D+V +       W+VK
Sbjct:   312 LKASVHPGGVFVHPSGTEKSLRDTIDELRKYHGDKQGKKFRVWADQVLATDTTPGTWIVK 371

Query:    61 FDKWE 65
              DKWE
Sbjct:   372 LDKWE 376


>TAIR|locus:2033893 [details] [associations]
            symbol:SPP1 "sucrose-phosphatase 1" species:3702
            "Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
            evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
            [GO:0005986 "sucrose biosynthetic process" evidence=IEA;ISS]
            [GO:0008152 "metabolic process" evidence=IEA] [GO:0016791
            "phosphatase activity" evidence=IEA] [GO:0050307 "sucrose-phosphate
            phosphatase activity" evidence=IEA;ISS] [GO:0005774 "vacuolar
            membrane" evidence=IDA] [GO:0010228 "vegetative to reproductive
            phase transition of meristem" evidence=RCA] [GO:0016926 "protein
            desumoylation" evidence=RCA] [GO:0050665 "hydrogen peroxide
            biosynthetic process" evidence=RCA] InterPro:IPR006378
            InterPro:IPR006379 InterPro:IPR012847 InterPro:IPR013679
            Pfam:PF08472 UniPathway:UPA00371 Pfam:PF05116 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005774 GO:GO:0000287
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            EMBL:AC024261 GO:GO:0016311 eggNOG:COG0561 TIGRFAMs:TIGR01484
            GO:GO:0005986 InterPro:IPR006380 TIGRFAMs:TIGR01482 IPI:IPI00536058
            PIR:D96552 RefSeq:NP_175553.1 UniGene:At.37821
            ProteinModelPortal:Q9C8J4 SMR:Q9C8J4 STRING:Q9C8J4 PaxDb:Q9C8J4
            PRIDE:Q9C8J4 EnsemblPlants:AT1G51420.1 GeneID:841567
            KEGG:ath:AT1G51420 TAIR:At1g51420 HOGENOM:HOG000272726
            InParanoid:Q9C8J4 OMA:RGEVENC PhylomeDB:Q9C8J4 ProtClustDB:PLN02382
            Genevestigator:Q9C8J4 GO:GO:0050307 TIGRFAMs:TIGR01485
            Uniprot:Q9C8J4
        Length = 423

 Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 27/67 (40%), Positives = 41/67 (61%)

Query:     1 MKCQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVK 60
             +K   +  G+  HPSG E+S+   +D +   YGDK+GK++RVW D+V +       W+VK
Sbjct:   313 LKASCHPSGVFVHPSGAEKSLRDTIDELGKYYGDKKGKKFRVWTDQVLATDTTPGTWIVK 372

Query:    61 FDKWESS 67
              DKWE +
Sbjct:   373 LDKWEQT 379


>TAIR|locus:2100544 [details] [associations]
            symbol:SPP2 "sucrose-6F-phosphate phosphohydrolase 2"
            species:3702 "Arabidopsis thaliana" [GO:0000287 "magnesium ion
            binding" evidence=IEA] [GO:0003824 "catalytic activity"
            evidence=IEA] [GO:0005986 "sucrose biosynthetic process"
            evidence=IEA;ISS] [GO:0008152 "metabolic process" evidence=IEA]
            [GO:0016791 "phosphatase activity" evidence=IEA] [GO:0050307
            "sucrose-phosphate phosphatase activity" evidence=IEA;ISS]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR006378
            InterPro:IPR006379 InterPro:IPR012847 InterPro:IPR013679
            Pfam:PF08472 UniPathway:UPA00371 Pfam:PF05116 GO:GO:0005829
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000287
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            GO:GO:0016311 EMBL:AL132972 eggNOG:COG0561 TIGRFAMs:TIGR01484
            GO:GO:0005986 InterPro:IPR006380 TIGRFAMs:TIGR01482
            HOGENOM:HOG000272726 ProtClustDB:PLN02382 GO:GO:0050307
            TIGRFAMs:TIGR01485 EMBL:AF356816 EMBL:AY091146 EMBL:BT000909
            EMBL:AK175395 IPI:IPI00538922 IPI:IPI00911382 PIR:T46104
            RefSeq:NP_001030846.1 RefSeq:NP_566964.1 RefSeq:NP_974417.1
            UniGene:At.21211 ProteinModelPortal:Q93XN8 SMR:Q93XN8 IntAct:Q93XN8
            STRING:Q93XN8 PaxDb:Q93XN8 PRIDE:Q93XN8 EnsemblPlants:AT3G52340.1
            EnsemblPlants:AT3G52340.2 EnsemblPlants:AT3G52340.3 GeneID:824399
            KEGG:ath:AT3G52340 TAIR:At3g52340 InParanoid:Q93XN8 OMA:STERCAD
            PhylomeDB:Q93XN8 Genevestigator:Q93XN8 Uniprot:Q93XN8
        Length = 423

 Score = 158 (60.7 bits), Expect = 8.3e-11, P = 8.3e-11
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query:    10 IIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWESSE 68
             ++ HPSG E+S+   +D ++  YGDK+GK++ VWVD+V         W+VKFDKWE  E
Sbjct:   322 VLFHPSGAEKSLRDTIDELKKCYGDKRGKKFWVWVDQVLVTDTIPGKWIVKFDKWEQCE 380


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.450    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      119       119   0.00091  102 3  11 22  0.44    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  161 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.73u 0.16s 11.89t   Elapsed:  00:00:01
  Total cpu time:  11.73u 0.16s 11.89t   Elapsed:  00:00:01
  Start:  Fri May 10 16:13:00 2013   End:  Fri May 10 16:13:01 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
