BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035945
(119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLDLMENLYG----DKQGKQYRVWVDRVSSAQIGLDAWLV 59
QN +L HP+ + S+H L L E + D+Q + +R W++ + + L
Sbjct: 57 QNLTL----HPASS--SLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLP 110
Query: 60 KFDKWESSEC 69
FDK E EC
Sbjct: 111 SFDKLELLEC 120
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 28.9 bits (63), Expect = 0.78, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLDLMENLYG----DKQGKQYRVWVDRVSSAQIGLDAWLV 59
QN +L HP+ + S+H L L E + D+Q + +R W++ + + L
Sbjct: 57 QNLTL----HPASS--SLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLXLP 110
Query: 60 KFDKWESSEC 69
FDK E EC
Sbjct: 111 SFDKLELLEC 120
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLDLMENLYG----DKQGKQYRVWVDRVSSAQIGLDAWLV 59
QN +L HP+ + S+H L L E + D+Q + +R W++ + + L
Sbjct: 57 QNLTL----HPASS--SLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLP 110
Query: 60 KFDKWESSEC 69
FDK E EC
Sbjct: 111 SFDKLELLEC 120
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLDLMENLYG----DKQGKQYRVWVDRVSSAQIGLDAWLV 59
QN +L HP+ + S+H L L E + D+Q + +R W++ + + L
Sbjct: 57 QNLTL----HPASS--SLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLP 110
Query: 60 KFDKWESSEC 69
FDK E EC
Sbjct: 111 SFDKLELLEC 120
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLDLMENLYG----DKQGKQYRVWVDRVSSAQIGLDAWLV 59
QN +L HP+ + S+H L L E + D+Q + +R W++ + + L
Sbjct: 57 QNLTL----HPASS--SLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLP 110
Query: 60 KFDKWESSEC 69
FDK E EC
Sbjct: 111 SFDKLELLEC 120
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 28.9 bits (63), Expect = 0.86, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLDLMENLYG----DKQGKQYRVWVDRVSSAQIGLDAWLV 59
QN +L HP+ + S+H L L E + D+Q + +R W++ + + L
Sbjct: 57 QNLTL----HPASS--SLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLP 110
Query: 60 KFDKWESSEC 69
FDK E EC
Sbjct: 111 SFDKLELLEC 120
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 32 YGDKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWESSECSPLHITLVLASAFWDLFVIK-- 89
+G + + + D +S + + W K + +E SP L+L SAF +LF+++
Sbjct: 70 FGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGF--AELSPADQDLLLESAFLELFILRLA 127
Query: 90 WRKQFNLGKFI 100
+R + GK I
Sbjct: 128 YRSKPGEGKLI 138
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 32 YGDKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWESSECSPLHITLVLASAFWDLFVIK-- 89
+G + + + D +S + + W K + +E SP L+L SAF +LF+++
Sbjct: 46 FGKEDAGDVQQFYDLLSGSLEVIRKWAEKIPGF--AELSPADQDLLLESAFLELFILRLA 103
Query: 90 WRKQFNLGKFI 100
+R + GK I
Sbjct: 104 YRSKPGEGKLI 114
>pdb|3KR9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase
pdb|3KU1|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|E Chain E, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|F Chain F, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|G Chain G, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
pdb|3KU1|H Chain H, Crystal Structure Of Streptococcus Pneumoniae Sp1610, A
Putative Trna (M1a22) Methyltransferase, In Complex With
S- Adenosyl-L-Methionine
Length = 225
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 20/71 (28%)
Query: 34 DKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWESSECSPLHITLVLASAFWDLFVIKWRK- 92
++ GK Y + V V + Q+ L A V+F + S E SP +FV KW+K
Sbjct: 144 EEAGKFYEILV--VEAGQMKLSASDVRFGPFLSKEVSP-------------VFVQKWQKE 188
Query: 93 ----QFNLGKF 99
+F LG+
Sbjct: 189 AEKLEFALGQI 199
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 4 QNYSLGIIAHPSGTEQSMHQCLD-----------LMENLYGDKQGKQYRVWVDRVSSAQI 52
Q+YS GI P GT Q+ + ++ N +G G Q +W++R ++
Sbjct: 141 QHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSA 200
Query: 53 GL 54
GL
Sbjct: 201 GL 202
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 30 NLYGDKQGKQYRVWVDRVSSAQIG-------LDAWLVKFDKWESSECSPLHITLVLASAF 82
+L D G Q+ + DR +I +D WL + SS C L+ A
Sbjct: 202 HLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLSAGGD 261
Query: 83 WDLFVIKWRKQFNLGKF 99
+F W+ NL F
Sbjct: 262 DKIFAWDWKTGKNLSTF 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,776,730
Number of Sequences: 62578
Number of extensions: 135603
Number of successful extensions: 390
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 11
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)