Query 035945
Match_columns 119
No_of_seqs 51 out of 53
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 13:11:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tp6_A Hypothetical protein PA 99.7 3E-18 1E-22 119.5 8.2 78 1-80 32-110 (128)
2 2r4i_A Uncharacterized protein 91.0 0.75 2.6E-05 28.8 5.9 58 3-66 29-86 (123)
3 3fsd_A NTF2-like protein of un 88.4 1.1 3.8E-05 29.6 5.5 55 3-61 37-91 (134)
4 3b7c_A Uncharacterized protein 54.4 40 0.0014 21.6 9.2 75 6-82 33-109 (122)
5 4akz_A Type IV secretion syste 50.1 21 0.00072 24.4 4.1 28 37-64 60-87 (138)
6 3sd4_A PHD finger protein 20; 35.6 56 0.0019 20.4 4.1 32 43-74 29-60 (69)
7 2jo8_A Serine/threonine-protei 27.4 6.1 0.00021 25.1 -1.5 22 15-36 20-41 (51)
8 2yyu_A Orotidine 5'-phosphate 23.7 50 0.0017 24.6 2.7 30 7-36 83-114 (246)
9 2cc3_A Protein VIRB8; secretio 22.2 1.3E+02 0.0043 20.9 4.4 67 37-104 66-136 (150)
10 2cly_C ATP synthase coupling f 22.2 18 0.00062 24.6 -0.0 28 7-34 25-53 (77)
11 2bhm_A Type IV secretion syste 21.8 92 0.0031 21.6 3.6 66 39-104 83-155 (164)
12 3blz_A NTF2-like protein of un 21.0 1.1E+02 0.0038 19.7 3.6 32 1-32 33-68 (128)
13 2jqo_A Hypothetical protein YO 20.9 72 0.0025 22.9 2.9 23 30-52 67-89 (108)
14 2fhm_A Probable acylphosphatas 20.4 65 0.0022 20.9 2.4 42 6-54 37-79 (91)
No 1
>1tp6_A Hypothetical protein PA1314; structural genomics, alpha-beta sandwich, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: d.17.4.12
Probab=99.75 E-value=3e-18 Score=119.48 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=75.2
Q ss_pred CccccCCCCcEEccCCCccchHHHHHHhHhhhcccCCceEEEEEEeeeeeeeeCceEEEEEcceeeeCcee-eEEEEEEe
Q 035945 1 MKCQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWESSECSP-LHITLVLA 79 (119)
Q Consensus 1 lKs~~~p~gt~VHPsGvE~sLh~~Id~Lr~~yGdKqGKkFRvWVDrV~~tqigsdtWLVKFDKWE~sg~Er-cclTT~ll 79 (119)
|++.++|+.++|+|+|.+.++++.++.++++||.++| |++|||++...+.++|+|+|+|++|+..++++ ||.||++|
T Consensus 32 l~a~~a~d~~mv~p~G~~~g~~~~~~~~~~~~g~~pg--l~i~i~~l~~~~~~~d~~vv~y~~~~~~~~~~~~rrsT~v~ 109 (128)
T 1tp6_A 32 LMARFAEDFSMVTPHGVVLDKTALGELFRSKGGTRPG--LRIEIDGESLLASGVDGATLAYREIQSDAAGRSERLSTVVL 109 (128)
T ss_dssp HHTTEEEEEEEECTTSCEEEHHHHHHHHHHHTTCSTT--CEEEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHhcCCCEEEECCCCeECCHHHHHHHHHHhhCCCCC--eEEEEEEEEEEeecCCEEEEEEEEEeccCCceeEEEEEEEE
Confidence 4678999999999999999999999999999999998 99999999999999999999999999999988 99999999
Q ss_pred e
Q 035945 80 S 80 (119)
Q Consensus 80 ~ 80 (119)
+
T Consensus 110 ~ 110 (128)
T 1tp6_A 110 H 110 (128)
T ss_dssp E
T ss_pred E
Confidence 5
No 2
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=90.97 E-value=0.75 Score=28.82 Aligned_cols=58 Identities=10% Similarity=-0.128 Sum_probs=41.2
Q ss_pred cccCCCCcEEccCCCccchHHHHHHhHhhhcccCCceEEEEEEeeeeeeeeCceEEEEEcceee
Q 035945 3 CQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWES 66 (119)
Q Consensus 3 s~~~p~gt~VHPsGvE~sLh~~Id~Lr~~yGdKqGKkFRvWVDrV~~tqigsdtWLVKFDKWE~ 66 (119)
+.++|+-++|||+|...+-.+.|+.+++-. .+.. ..=+..+....+|++..++- .+..
T Consensus 29 ~l~~~d~~~~~~~G~~~~~~~~i~~~~~~~--~~~~--~~~~~~~~v~~~g~~a~~~~--~~~~ 86 (123)
T 2r4i_A 29 VLLHDDLLFIIPSGETVTKETDIAAYSSGK--IALR--AVVPSDYIIRIIHDTVVVSV--NIEI 86 (123)
T ss_dssp HHEEEEEEEECTTSCEECHHHHHHHHHTTC--EEEE--EEEEEEEEEEEETTEEEEEE--EEEE
T ss_pred hhhCcCeEEECCCCCCccHHHHHHHHhcCC--eEEE--EEeecccEEEEECCEEEEEE--EEEE
Confidence 346788999999999888888898887532 1112 23356677788898888887 4443
No 3
>3fsd_A NTF2-like protein of unknown function in nutrient; YP_427473.1, NTF2-like protein of unknown function in nutrie uptake; HET: UNL; 1.70A {Rhodospirillum rubrum atcc 11170} SCOP: d.17.4.0
Probab=88.40 E-value=1.1 Score=29.65 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=39.7
Q ss_pred cccCCCCcEEccCCCccchHHHHHHhHhhhcccCCceEEEEEEeeeeeeeeCceEEEEE
Q 035945 3 CQNYSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVKF 61 (119)
Q Consensus 3 s~~~p~gt~VHPsGvE~sLh~~Id~Lr~~yGdKqGKkFRvWVDrV~~tqigsdtWLVKF 61 (119)
+.++|+-++|||+|...+-.+.|+.+++ |..+..+ .=+......-+|+|+=+|..
T Consensus 37 ~L~~~d~~~v~~~G~~~~~~~~l~~~~~--g~~~~~~--~~~~~~~v~~~g~d~Avv~~ 91 (134)
T 3fsd_A 37 TLLADDLAFVDHTGCVKTKQTHLEPYRA--GLLKLSR--LDLSDAVVRAAGEDGRVVVV 91 (134)
T ss_dssp HHEEEEEEEECTTSCEECHHHHHHHHHT--TCEEEEE--EEEEEEEEEESSTTEEEEEE
T ss_pred hhcCCCEEEECCCCcCccHHHHHHHHHc--CCceEEE--EEEeccEEEEeCCCEEEEEE
Confidence 4578899999999999888889998874 3222223 33666777778887777754
No 4
>3b7c_A Uncharacterized protein; NTF-2 like protein, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.70A {Shewanella oneidensis} SCOP: d.17.4.16
Probab=54.43 E-value=40 Score=21.58 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCCCcEEccCCCccchHHHHHHhHhhhcccCCceEEEEEEeeeeeeeeCceEEEEEcceeeeCc--eeeEEEEEEeecc
Q 035945 6 YSLGIIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGLDAWLVKFDKWESSEC--SPLHITLVLASAF 82 (119)
Q Consensus 6 ~p~gt~VHPsGvE~sLh~~Id~Lr~~yGdKqGKkFRvWVDrV~~tqigsdtWLVKFDKWE~sg~--ErcclTT~ll~~k 82 (119)
+|+-++|+|.|.-....+..+..++.|..+-... .+=.+.+....++++.-+|-. .|.+.+. +..-.+|.++...
T Consensus 33 ~~d~~~~~~~~~~~G~~~i~~~~~~~f~~~~~~~-~l~~~~~~~~~~~~~~a~v~~-~~~~~~~~~~~~~r~T~v~~k~ 109 (122)
T 3b7c_A 33 NEQLMLISNGKFRNGWDETLAAYKKNYPDKESLG-ELKFTIKEIKMLSNYAAMVVG-RWDLKRLKDTPTGVFTLLVEKI 109 (122)
T ss_dssp STTCEEECSSCEEECHHHHHHHHHHHCSSGGGSC-EEEEEEEEEEEEETTEEEEEE-EEEEECSSCCCEEEEEEEEEEE
T ss_pred CCCEEEECCCccccCHHHHHHHHHHhcCChhhcC-eeEEEEEEEEEcCCCEEEEEE-EEEEEccCCCCCcEEEEEEEEe
Confidence 6889999999988888888888888886432111 122233333446777776643 3666644 3322456665543
No 5
>4akz_A Type IV secretion system protein VIRB8; transport protein; 2.25A {Brucella suis} PDB: 4aky_A
Probab=50.06 E-value=21 Score=24.35 Aligned_cols=28 Identities=32% Similarity=0.247 Sum_probs=23.8
Q ss_pred CceEEEEEEeeeeeeeeCceEEEEEcce
Q 035945 37 GKQYRVWVDRVSSAQIGLDAWLVKFDKW 64 (119)
Q Consensus 37 GKkFRvWVDrV~~tqigsdtWLVKFDKW 64 (119)
|++-++=|+-++...++++++.|+|.+=
T Consensus 60 g~~~~v~V~I~Si~~~~~~~aqVrf~~t 87 (138)
T 4akz_A 60 GSNVRTSVTIVSIVPNGKGIGTVRFAKT 87 (138)
T ss_dssp TTSEEEEEEEEEEEECSSSEEEEEEEEE
T ss_pred cCccEEEEEEEEEeecCCCEEEEEEEEE
Confidence 3456888999999999999999999863
No 6
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=35.59 E-value=56 Score=20.36 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=23.5
Q ss_pred EEEeeeeeeeeCceEEEEEcceeeeCceeeEE
Q 035945 43 WVDRVSSAQIGLDAWLVKFDKWESSECSPLHI 74 (119)
Q Consensus 43 WVDrV~~tqigsdtWLVKFDKWE~sg~Erccl 74 (119)
.+=.|....+....-+|.||-|...-+|+|+.
T Consensus 29 ~~AtV~~v~~~~~~~~VhfdGw~~~~D~W~~~ 60 (69)
T 3sd4_A 29 YPAHIEDIDYEEGKVLIHFKRWNHRYDEWFCW 60 (69)
T ss_dssp EEEEEEEEETTTTEEEEEETTSCGGGCEEEET
T ss_pred cccEEEEEeccCCEEEEEeCCCCCCCCEEEcC
Confidence 45555555446778899999999888888764
No 7
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=27.36 E-value=6.1 Score=25.11 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.3
Q ss_pred CCCccchHHHHHHhHhhhcccC
Q 035945 15 SGTEQSMHQCLDLMENLYGDKQ 36 (119)
Q Consensus 15 sGvE~sLh~~Id~Lr~~yGdKq 36 (119)
.+++.-+++.|+.||..|+-|+
T Consensus 20 ~~Ld~~Me~Ei~elr~RY~~KR 41 (51)
T 2jo8_A 20 LALDPMMEQEIEEIRQKYQSKR 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHHHHHhH
Confidence 4566778999999999999775
No 8
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=23.71 E-value=50 Score=24.59 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCcEEccCCCccchHHHHHHhHhh--hcccC
Q 035945 7 SLGIIAHPSGTEQSMHQCLDLMENL--YGDKQ 36 (119)
Q Consensus 7 p~gt~VHPsGvE~sLh~~Id~Lr~~--yGdKq 36 (119)
.+.+.|||.+-...++++++.+++. ||.|.
T Consensus 83 ad~vTvH~~~g~~~l~~~~~~~~~~~~~G~~~ 114 (246)
T 2yyu_A 83 ADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMR 114 (246)
T ss_dssp CSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhhcccCCcC
Confidence 5778999999888899999999886 66543
No 9
>2cc3_A Protein VIRB8; secretion system, type IV secretion system, consurf; 2.2A {Agrobacterium tumefaciens} SCOP: d.17.4.26
Probab=22.25 E-value=1.3e+02 Score=20.87 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=37.4
Q ss_pred CceEEEEEEeeeeeeeeCceEEEEEccee-eeCce--e-eEEEEEEeecccchHHHHHHHhhCCCceeeeeh
Q 035945 37 GKQYRVWVDRVSSAQIGLDAWLVKFDKWE-SSECS--P-LHITLVLASAFWDLFVIKWRKQFNLGKFIIELR 104 (119)
Q Consensus 37 GKkFRvWVDrV~~tqigsdtWLVKFDKWE-~sg~E--r-cclTT~ll~~k~d~~~~~w~~q~~~~~~i~~~~ 104 (119)
|++-.+=|+=.+.+.+++++|.|+|.+=. ..|.. . --..|+-+..... -+.+.|..--+|=++...|
T Consensus 66 ~~~~~v~V~I~Si~~~~~~~aqVrf~~t~~~~g~~~~~~~w~Atvt~~~~~~-~~~~~r~~NPlGf~Vt~Y~ 136 (150)
T 2cc3_A 66 GKHGRLEVEHIASNDVTPGVQQIRYKRTLIVDGKMPMASTWTATVRYEKVTS-LPGRLRLTNPGGLVVTSYQ 136 (150)
T ss_dssp TTSEEEEEEEEEEEEEETTEEEEEEEEEEEETTSCCEEEEEEEEEEEEECSC-CCHHHHTTCTTCEEEEEEE
T ss_pred ccCceEEEEEEEeeecCCCeEEEEEEEEEccCCCccceEEEEEEEEEEecCC-CCHHHHhhCCCceEEEEEE
Confidence 44444445555677889999999999622 33542 1 3444553343333 3455555555555555443
No 10
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=22.24 E-value=18 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=23.0
Q ss_pred CCCcEEccCC-CccchHHHHHHhHhhhcc
Q 035945 7 SLGIIAHPSG-TEQSMHQCLDLMENLYGD 34 (119)
Q Consensus 7 p~gt~VHPsG-vE~sLh~~Id~Lr~~yGd 34 (119)
.+|-+|-|+= +++.|.+.++-|++.||.
T Consensus 25 ~~G~lVD~~Pe~~kel~~el~kL~~~YGg 53 (77)
T 2cly_C 25 TSGGPVDAGPEYQQDLDRELFKLKQMYGK 53 (77)
T ss_dssp CCSSSSSCCTHHHHHHHHHHHHHHHHHCS
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 3577887732 789999999999999995
No 11
>2bhm_A Type IV secretion system protein VIRB8; bacterial protein, bacterial type IV secretion; 2.4A {Brucella melitensis biovar suis} SCOP: d.17.4.26
Probab=21.82 E-value=92 Score=21.61 Aligned_cols=66 Identities=20% Similarity=0.033 Sum_probs=35.9
Q ss_pred eEEEEEEeeeeeeeeCceEEEEEcceee---eCce--e-eEEEEEEeecccch-HHHHHHHhhCCCceeeeeh
Q 035945 39 QYRVWVDRVSSAQIGLDAWLVKFDKWES---SECS--P-LHITLVLASAFWDL-FVIKWRKQFNLGKFIIELR 104 (119)
Q Consensus 39 kFRvWVDrV~~tqigsdtWLVKFDKWE~---sg~E--r-cclTT~ll~~k~d~-~~~~w~~q~~~~~~i~~~~ 104 (119)
+-.+=|+=.+.+.+++++|.|+|.+=.. .|.. . --..|+-+.....- -+...|..--+|=++-..|
T Consensus 83 ~~~v~V~I~Si~~~~~~~aqVrf~~~~~~~~~g~~~~~~~w~Atvt~~~~~~~~~~~~~~~~NPlGf~Vt~y~ 155 (164)
T 2bhm_A 83 NVRTSVTIVSIVPNGKGIGTVRFAKTTKRTNETGDGETTHWIATIGYQYVNPSLMSESARLTNPLGFNVTSYR 155 (164)
T ss_dssp TCEEEEEEEEEEECSSSEEEEEEEEEEEC----CCCEEEEEEEEEEEEECCGGGSCHHHHTTCTTCEEEEEEE
T ss_pred CcEEEEEEEEEEecCCCeEEEEEEEEEEccCCCCCcceEEEEEEEEEEeCCCccCCHHHHhhCCCceEEEEEe
Confidence 3344455567778899999999997442 2322 2 44555544443221 1355555555555555444
No 12
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=20.97 E-value=1.1e+02 Score=19.72 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=23.0
Q ss_pred CccccCCCCcEEccC-C---CccchHHHHHHhHhhh
Q 035945 1 MKCQNYSLGIIAHPS-G---TEQSMHQCLDLMENLY 32 (119)
Q Consensus 1 lKs~~~p~gt~VHPs-G---vE~sLh~~Id~Lr~~y 32 (119)
|++..+|+++++++. | ...++.+.++.+.+.+
T Consensus 33 l~~~f~~da~~~~~~~~g~~~~~~~~~~~~~~~~~~ 68 (128)
T 3blz_A 33 MRPAFSSQATIFGVDVDNKLTGGPIQGLFDVIDNVF 68 (128)
T ss_dssp HGGGEEEEEEEEEECTTSCEEEEETHHHHHHHHHTC
T ss_pred HHHhhCCCcEEEEEeCCCcEEecCHHHHHHHHHhcC
Confidence 467789999998765 3 4557777788776654
No 13
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=20.87 E-value=72 Score=22.90 Aligned_cols=23 Identities=22% Similarity=0.396 Sum_probs=19.0
Q ss_pred hhhcccCCceEEEEEEeeeeeee
Q 035945 30 NLYGDKQGKQYRVWVDRVSSAQI 52 (119)
Q Consensus 30 ~~yGdKqGKkFRvWVDrV~~tqi 52 (119)
...+-|.|-+-+||.|.|+++-=
T Consensus 67 ~~~~lK~GdKIKVW~s~iLESyP 89 (108)
T 2jqo_A 67 NTDDLKRGEKIKVWFHTRKESNP 89 (108)
T ss_dssp TGGGCCTTEEEEEEEEEEECSSS
T ss_pred cccccCCCCEEEEEehhhhhhCC
Confidence 45678999999999999987643
No 14
>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A
Probab=20.44 E-value=65 Score=20.89 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=32.7
Q ss_pred CCCC-cEEccCCCccchHHHHHHhHhhhcccCCceEEEEEEeeeeeeeeC
Q 035945 6 YSLG-IIAHPSGTEQSMHQCLDLMENLYGDKQGKQYRVWVDRVSSAQIGL 54 (119)
Q Consensus 6 ~p~g-t~VHPsGvE~sLh~~Id~Lr~~yGdKqGKkFRvWVDrV~~tqigs 54 (119)
.++| +.|...|-+..+.+-++.|++ |..+ .-||.|..+++..
T Consensus 37 ~~dG~Vei~~eG~~~~i~~f~~~l~~------~~p~-a~V~~v~~~~~~~ 79 (91)
T 2fhm_A 37 RDDGRVEILAEGPENALQSFVEAVKN------GSPF-SKVTDISVTESRS 79 (91)
T ss_dssp CTTSCEEEEEEECHHHHHHHHHHHHT------TCSS-SEEEEEEEEEECC
T ss_pred CCCCcEEEEEEeCHHHHHHHHHHHHh------CCCc-cEEEEEEEEEecC
Confidence 5678 889999999888888888853 4455 8899998776643
Done!