BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035950
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
           Of Plant Myb-Related Dna Binding Motifs Of The
           Arabidopsis Response Regulators
          Length = 64

 Score = 61.2 bits (147), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/60 (51%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA 215
           T+  K R+ WT  LHN+F+  V+ LG  E+A PK IL LM++D LT  +V SHLQK+R A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59


>pdb|2WM9|A Chain A, Structure Of The Complex Between Dock9 And Cdc42.
 pdb|2WMN|A Chain A, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
 pdb|2WMO|A Chain A, Structure Of The Complex Between Dock9 And Cdc42
          Length = 428

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 235 VRLDSESGMQLVETLKLQLDVQKRL--HDQLEVQRNLQLQIEEQGKQLTQMLDQQL 288
           V+L  E   Q VE     L V +RL   DQLE Q  ++    E  K+L++++ +QL
Sbjct: 372 VKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMAKELSEIMHEQL 427


>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 28.5 bits (62), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 6/60 (10%)

Query: 263 LEVQRNLQLQIEEQGKQLTQMLDQQLKPNKSLVDS-NNLEKQYT-----LFSSVTRLSVS 316
           +E  + L + +E +  QL + +D+Q K  KSL++  NNLE  Y+     L S V RL +S
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,875,397
Number of Sequences: 62578
Number of extensions: 353989
Number of successful extensions: 817
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 4
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)