Query         035950
Match_columns 320
No_of_seqs    206 out of 412
Neff          3.5 
Searched_HMMs 29240
Date          Mon Mar 25 13:15:13 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035950hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1irz_A ARR10-B; helix-turn-hel 100.0 9.9E-30 3.4E-34  193.4   5.9   61  157-218     2-62  (64)
  2 2hzd_A Transcriptional enhance  89.1    0.32 1.1E-05   38.6   3.6   57  159-217     3-76  (82)
  3 2yus_A SWI/SNF-related matrix-  88.5    0.62 2.1E-05   35.8   4.9   48  159-212    15-62  (79)
  4 2yum_A ZZZ3 protein, zinc fing  88.5    0.84 2.9E-05   33.8   5.5   54  160-216     6-62  (75)
  5 2cu7_A KIAA1915 protein; nucle  88.2     1.2   4E-05   33.0   6.1   52  159-216     6-57  (72)
  6 1x41_A Transcriptional adaptor  83.2     1.6 5.6E-05   31.2   4.5   50  159-214     5-55  (60)
  7 2iw5_B Protein corest, REST co  76.6     3.8 0.00013   37.9   5.8   52  158-215   129-180 (235)
  8 2xag_B REST corepressor 1; ami  76.1     3.5 0.00012   41.5   5.8   54  158-217   376-429 (482)
  9 2elk_A SPCC24B10.08C protein;   75.2     4.7 0.00016   28.7   4.8   46  162-213     9-56  (58)
 10 2cqq_A RSGI RUH-037, DNAJ homo  71.4       6  0.0002   29.9   4.8   48  163-216     9-59  (72)
 11 1ity_A TRF1; helix-turn-helix,  67.0      14 0.00048   26.8   5.9   54  157-214     5-59  (69)
 12 2cqr_A RSGI RUH-043, DNAJ homo  66.2      11 0.00038   28.5   5.4   51  161-214    17-68  (73)
 13 2yqk_A Arginine-glutamic acid   63.1     6.7 0.00023   28.6   3.5   49  156-209     3-51  (63)
 14 2ba2_A D12_ORF131, hypothetica  62.0      18 0.00061   28.9   6.0   44  245-291    34-77  (85)
 15 2d9a_A B-MYB, MYB-related prot  61.6      11 0.00037   26.5   4.3   49  158-212     4-53  (60)
 16 3sjm_A Telomeric repeat-bindin  57.9      24 0.00082   25.7   5.7   49  159-210     8-56  (64)
 17 2eqr_A N-COR1, N-COR, nuclear   57.2      12  0.0004   26.9   3.9   47  156-208     6-52  (61)
 18 1guu_A C-MYB, MYB proto-oncoge  57.0      25 0.00087   23.8   5.4   46  162-212     3-48  (52)
 19 2dim_A Cell division cycle 5-l  51.2      45  0.0015   24.0   6.3   50  158-212     5-54  (70)
 20 2kes_A Synphilin-1; synphillin  48.5      15 0.00053   26.2   3.2   22  255-276    16-41  (48)
 21 1gvd_A MYB proto-oncogene prot  45.9      46  0.0016   22.5   5.3   46  162-212     3-48  (52)
 22 4eef_G F-HB80.4, designed hema  45.3      12 0.00039   29.2   2.3   45  164-211    22-67  (74)
 23 1wgx_A KIAA1903 protein; MYB D  41.9      47  0.0016   25.4   5.2   46  164-212    10-56  (73)
 24 1w0t_A Telomeric repeat bindin  41.3      61  0.0021   22.1   5.4   48  162-212     2-49  (53)
 25 2cjj_A Radialis; plant develop  40.5      36  0.0012   26.9   4.6   47  164-213    10-57  (93)
 26 2aje_A Telomere repeat-binding  35.7 1.1E+02  0.0039   24.6   6.9   54  156-212     7-62  (105)
 27 2li6_A SWI/SNF chromatin-remod  35.2     9.5 0.00033   30.7   0.4   44  167-213    49-96  (116)
 28 2lm1_A Lysine-specific demethy  34.0      22 0.00076   27.8   2.4   45  167-212    44-94  (107)
 29 2eqy_A RBP2 like, jumonji, at   30.2      31  0.0011   28.0   2.8   46  167-213    42-93  (122)
 30 2crg_A Metastasis associated p  29.6      47  0.0016   24.6   3.5   47  158-209     4-50  (70)
 31 1c20_A DEAD ringer protein; DN  29.6      29 0.00099   28.2   2.5   46  167-213    52-104 (128)
 32 2cxy_A BAF250B subunit, HBAF25  29.2      29   0.001   28.1   2.4   45  167-212    51-101 (125)
 33 1kkx_A Transcription regulator  28.8      20 0.00068   29.4   1.3   45  167-214    48-96  (123)
 34 2din_A Cell division cycle 5-l  27.5 1.5E+02  0.0053   20.8   5.8   49  159-214     6-54  (66)
 35 2jrz_A Histone demethylase jar  27.4      32  0.0011   27.7   2.3   45  167-212    40-90  (117)
 36 1qgp_A Protein (double strande  25.5      80  0.0027   23.3   4.1   45  165-212    11-55  (77)
 37 3osg_A MYB21; transcription-DN  24.4 1.3E+02  0.0045   23.9   5.5   53  162-220    62-114 (126)
 38 1gv2_A C-MYB, MYB proto-oncoge  24.2 1.3E+02  0.0045   22.8   5.3   46  162-212     4-49  (105)
 39 2jxj_A Histone demethylase jar  24.2      35  0.0012   26.1   1.9   45  167-212    36-86  (96)
 40 3osg_A MYB21; transcription-DN  21.9 1.7E+02   0.006   23.1   5.8   50  158-213     7-56  (126)
 41 2roh_A RTBP1, telomere binding  21.5 1.6E+02  0.0053   24.4   5.5   52  156-211    25-79  (122)
 42 2kk0_A AT-rich interactive dom  20.2      62  0.0021   27.0   2.8   45  167-212    64-115 (145)
 43 2ltp_A Nuclear receptor corepr  25.4      22 0.00075   27.3   0.0   51  158-214    12-62  (89)

No 1  
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96  E-value=9.9e-30  Score=193.42  Aligned_cols=61  Identities=49%  Similarity=0.804  Sum_probs=57.7

Q ss_pred             CCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhccCC
Q 035950          157 SHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHI  218 (320)
Q Consensus       157 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~  218 (320)
                      +.+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            5689999999999999999999999 799999999999999999999999999999997543


No 2  
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.11  E-value=0.32  Score=38.57  Aligned_cols=57  Identities=21%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhh---c-C-----------C--CCCcHHHHHHhhhhhhhccC
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKL---M-D-----------I--DGLTIFHVKSHLQKYRTARH  217 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~l---M-~-----------v--~gLT~~hVkSHLQKYRl~~~  217 (320)
                      ++..-.|.++|-..|++|+...- + --+-|-+|..   | |           .  +-=|+.+|.||||.-|..+.
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp-~-~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSC-S-SSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcC-C-CCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            45667899999999999999875 1 1122333311   1 1           0  33477899999999776543


No 3  
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.54  E-value=0.62  Score=35.79  Aligned_cols=48  Identities=13%  Similarity=0.146  Sum_probs=39.0

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      ...+-.||+|=+.+|++||...|+-.    +.|-+.|  ++=|..+++.|-++|
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v--~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDW----NKVSEHV--GSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHH--SSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHc--CCCCHHHHHHHHHHh
Confidence            34466899999999999999999433    5566665  489999999999987


No 4  
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.51  E-value=0.84  Score=33.80  Aligned_cols=54  Identities=19%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             CCceecChHHHHHHHHHHHHhCCCCCcch---hhhhhhcCCCCCcHHHHHHhhhhhhhcc
Q 035950          160 KTRIRWTQHLHNRFVECVEFLGGAEKATP---KGILKLMDIDGLTIFHVKSHLQKYRTAR  216 (320)
Q Consensus       160 K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~~  216 (320)
                      ..+-.||+|=+++|++||..+| .+...|   +.|-+.|  +|=|..+|+.|-++|-...
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            3445799999999999999998 333222   3444454  7899999999999997643


No 5  
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=88.18  E-value=1.2  Score=32.98  Aligned_cols=52  Identities=27%  Similarity=0.366  Sum_probs=41.1

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhcc
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTAR  216 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~  216 (320)
                      ...+-.||+|=++.|+++|..+|-    .=+.|-+.  ++|=|-.+|+.|.++|-..+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            345668999999999999999993    33556555  47999999999999885543


No 6  
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=83.22  E-value=1.6  Score=31.19  Aligned_cols=50  Identities=24%  Similarity=0.239  Sum_probs=38.9

Q ss_pred             CCCceecChHHHHHHHHHHHHhC-CCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhh
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLG-GAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl  214 (320)
                      .-.+-.||+|=..++++||..+| +-.    +.|-+.|  +|=|-.+++.|-++|-.
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34556799999999999999999 332    4455555  68899999999888754


No 7  
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=76.63  E-value=3.8  Score=37.93  Aligned_cols=52  Identities=23%  Similarity=0.355  Sum_probs=42.8

Q ss_pred             CCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhc
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTA  215 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~  215 (320)
                      ..+..-+||+|=++.|++|+...|--    =..|-++  |++=|..+|+.|..+||..
T Consensus       129 ~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~--VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          129 IQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDV--IGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence            44677899999999999999999932    4556665  5789999999999999854


No 8  
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=76.13  E-value=3.5  Score=41.53  Aligned_cols=54  Identities=20%  Similarity=0.302  Sum_probs=43.1

Q ss_pred             CCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhccC
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARH  217 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~  217 (320)
                      ..+..-+||+|=|..|++||.+.|-    .=+.|-+.++-  =|..+|++|-++||....
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence            3466789999999999999999983    34566667654  499999999999987543


No 9  
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=75.23  E-value=4.7  Score=28.71  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             ceecChHHHHHHHHHHHHhC-CCCCcchhhhhhhcCCC-CCcHHHHHHhhhhhh
Q 035950          162 RIRWTQHLHNRFVECVEFLG-GAEKATPKGILKLMDID-GLTIFHVKSHLQKYR  213 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~-gLT~~hVkSHLQKYR  213 (320)
                      +-.||+|=+.++++||.+.| |-..    .|-+.|  + |=|..+++.|-++|-
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~----~IA~~~--~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWA----DIADYV--GNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHH----HHHHHH--CSSCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHH----HHHHHH--CCCCCHHHHHHHHHHHc
Confidence            44699999999999999999 4333    344444  4 778899999888764


No 10 
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=71.39  E-value=6  Score=29.89  Aligned_cols=48  Identities=17%  Similarity=0.330  Sum_probs=38.1

Q ss_pred             eecChHHHHHHHHHHHHhCCCCCcchhh---hhhhcCCCCCcHHHHHHhhhhhhhcc
Q 035950          163 IRWTQHLHNRFVECVEFLGGAEKATPKG---ILKLMDIDGLTIFHVKSHLQKYRTAR  216 (320)
Q Consensus       163 lrWT~ELH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYRl~~  216 (320)
                      -.||.|=+.+|+.|+..+++   -||.+   |-+.|   |=|..+|+.|-+++....
T Consensus         9 ~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhc
Confidence            36999999999999999983   35665   44555   689999999988876553


No 11 
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=67.01  E-value=14  Score=26.76  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=42.3

Q ss_pred             CCCCCceecChHHHHHHHHHHHHhC-CCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhh
Q 035950          157 SHSKTRIRWTQHLHNRFVECVEFLG-GAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       157 ~~~K~RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl  214 (320)
                      ..++.|-.||+|=.+..+++|.++| |-    =+.|.+.|+..|=|-.+++.+-..|-.
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGN----WSKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSC----HHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCc----HHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            3567888999999999999999998 32    356777776558888999887776643


No 12 
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.19  E-value=11  Score=28.49  Aligned_cols=51  Identities=8%  Similarity=0.033  Sum_probs=39.2

Q ss_pred             CceecChHHHHHHHHHHHHhCCCCCcchhhhhhhc-CCCCCcHHHHHHhhhhhhh
Q 035950          161 TRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLM-DIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       161 ~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM-~v~gLT~~hVkSHLQKYRl  214 (320)
                      .+-.||+|=..+|++||..+|.   -+|.+--++= -|||=|-.+|+.|-+.+.-
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            3446999999999999999982   2676654432 2579999999999887643


No 13 
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.15  E-value=6.7  Score=28.57  Aligned_cols=49  Identities=18%  Similarity=0.181  Sum_probs=33.1

Q ss_pred             CCCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhh
Q 035950          156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHL  209 (320)
Q Consensus       156 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL  209 (320)
                      +.+...+-.||+|=|+.|.+|+.+.|= +   =..|-+.| |+.=|..+|..+-
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY   51 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY   51 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence            344556679999999999999999982 1   13333311 5677777775443


No 14 
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=62.05  E-value=18  Score=28.87  Aligned_cols=44  Identities=25%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 035950          245 LVETLKLQLDVQKRLHDQLEVQRNLQLQIEEQGKQLTQMLDQQLKPN  291 (320)
Q Consensus       245 i~eaL~~QmEvQkrLhEQLEVQR~LQlRIEaQGKyLq~iLekaq~~~  291 (320)
                      |.+.|..|=|-=+.--||   -+.||+-+.|||+-|+.||+--+...
T Consensus        34 ie~~~~~QgEqI~~qGeq---IkeLq~eqkaQg~tl~lil~tL~~~n   77 (85)
T 2ba2_A           34 VMESFAVQNQNIDAQGEQ---IKELQVEQKAQGKTLQLILEALQGIN   77 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566666665543333344   38899999999999999998765543


No 15 
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=61.65  E-value=11  Score=26.54  Aligned_cols=49  Identities=14%  Similarity=0.154  Sum_probs=37.2

Q ss_pred             CCCCceecChHHHHHHHHHHHHhC-CCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLG-GAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      +...|-.||+|=.++++++|.++| +-    =+.|-+.|  +|=|-.+++.|-.+|
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~Rw~~~   53 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQQD----WKFLASHF--PNRTDQQCQYRWLRV   53 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCTTC----HHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHc--cCCCHHHHHHHHHHH
Confidence            345677899999999999999998 22    24455554  688889998887765


No 16 
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=57.89  E-value=24  Score=25.69  Aligned_cols=49  Identities=16%  Similarity=0.130  Sum_probs=36.6

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhh
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQ  210 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQ  210 (320)
                      .+.|-.||+|=-++.+++|.+.|. .  .=+.|.+.++..|=|-.+++-+-.
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~   56 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRWR   56 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHHH
Confidence            345678999999999999999982 1  245677777777888888876543


No 17 
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.23  E-value=12  Score=26.91  Aligned_cols=47  Identities=11%  Similarity=0.018  Sum_probs=35.0

Q ss_pred             CCCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHh
Q 035950          156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSH  208 (320)
Q Consensus       156 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSH  208 (320)
                      ...++..-.||+|=|+.|++|+.+.|-  +  =..|-+.  +||=|..+|.-|
T Consensus         6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~   52 (61)
T 2eqr_A            6 SGDRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLY   52 (61)
T ss_dssp             CCCCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHH
Confidence            345677789999999999999999982  1  2445444  468888888755


No 18 
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=57.04  E-value=25  Score=23.81  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      +-.||+|=..+++++|.+.|.   ..=+.|-+.|  +|=|-.+++.|-.+|
T Consensus         3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            457999999999999999983   1235555554  688889998887765


No 19 
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.24  E-value=45  Score=24.03  Aligned_cols=50  Identities=14%  Similarity=0.106  Sum_probs=38.3

Q ss_pred             CCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      +...|=.||+|=.++++++|.++|-   ..=+.|-+.|+  |=|-.+++.|-..|
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~   54 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW   54 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence            3455678999999999999999981   12356666664  88999998887775


No 20 
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=48.46  E-value=15  Score=26.23  Aligned_cols=22  Identities=36%  Similarity=0.536  Sum_probs=16.4

Q ss_pred             HhHHHHHH----HHHHHHHHHHHHHH
Q 035950          255 VQKRLHDQ----LEVQRNLQLQIEEQ  276 (320)
Q Consensus       255 vQkrLhEQ----LEVQR~LQlRIEaQ  276 (320)
                      +=|+|+||    +.+|.+||.-+|+|
T Consensus        16 ltkql~eqt~~rv~lq~qlq~lle~~   41 (48)
T 2kes_A           16 LTKQLKEQTVERVTLQNQLQQFLEAQ   41 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45778887    45788888888777


No 21 
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=45.88  E-value=46  Score=22.54  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=34.3

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      +-.||+|=..+++++|.+.|..   .=..|-+.|  +|=|-.+++.|-..|
T Consensus         3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~   48 (52)
T 1gvd_A            3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH   48 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            3479999999999999999821   123454444  688888998887765


No 22 
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=45.32  E-value=12  Score=29.21  Aligned_cols=45  Identities=27%  Similarity=0.350  Sum_probs=36.4

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCcchhhhhhhcC-CCCCcHHHHHHhhhh
Q 035950          164 RWTQHLHNRFVECVEFLGGAEKATPKGILKLMD-IDGLTIFHVKSHLQK  211 (320)
Q Consensus       164 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQK  211 (320)
                      .||.+=...|..|+...+   +-||.+--++-. |||=|...|+.|-|-
T Consensus        22 ~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~~   67 (74)
T 4eef_G           22 PWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYEL   67 (74)
T ss_dssp             CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred             CCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence            599999999999998875   567887665543 689999999998653


No 23 
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=41.94  E-value=47  Score=25.38  Aligned_cols=46  Identities=9%  Similarity=0.094  Sum_probs=36.8

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCcchhhhhhh-cCCCCCcHHHHHHhhhhh
Q 035950          164 RWTQHLHNRFVECVEFLGGAEKATPKGILKL-MDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       164 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~l-M~v~gLT~~hVkSHLQKY  212 (320)
                      .||.+=..+|.+|+..++   +.+|-+--++ .-|+|=|.++|+.|-...
T Consensus        10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l   56 (73)
T 1wgx_A           10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            599999999999999986   4478876554 346899999998876654


No 24 
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=41.30  E-value=61  Score=22.10  Aligned_cols=48  Identities=17%  Similarity=0.162  Sum_probs=35.3

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      |-.||+|=.+..+++|...|.   ..=+.|.+.|+..|=|-.+++.+-..|
T Consensus         2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~   49 (53)
T 1w0t_A            2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM   49 (53)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            457999999999999999992   123556667755477888887765544


No 25 
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=40.54  E-value=36  Score=26.85  Aligned_cols=47  Identities=19%  Similarity=0.317  Sum_probs=36.0

Q ss_pred             ecChHHHHHHHHHHHHhCCCCCcchhhhhhh-cCCCCCcHHHHHHhhhhhh
Q 035950          164 RWTQHLHNRFVECVEFLGGAEKATPKGILKL-MDIDGLTIFHVKSHLQKYR  213 (320)
Q Consensus       164 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~l-M~v~gLT~~hVkSHLQKYR  213 (320)
                      .||+|=...|++|+..+|.   -+|.+--++ --|||=|-.+|+.|-.++.
T Consensus        10 ~WT~eEd~~L~~al~~~~~---~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A           10 PWSAKENKAFERALAVYDK---DTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             SCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            5999999999999999982   256543322 1247999999999988874


No 26 
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=35.71  E-value=1.1e+02  Score=24.57  Aligned_cols=54  Identities=17%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             CCCCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcC--CCCCcHHHHHHhhhhh
Q 035950          156 TSHSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMD--IDGLTIFHVKSHLQKY  212 (320)
Q Consensus       156 ~~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~--v~gLT~~hVkSHLQKY  212 (320)
                      ...++.|-.||+|=.+..+++|.++|.-   .=+.|++.+.  .+|=|-.++|.+...+
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnl   62 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTL   62 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence            3467899999999999999999999931   2346666553  3889999999765443


No 27 
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.16  E-value=9.5  Score=30.67  Aligned_cols=44  Identities=18%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCcch----hhhhhhcCCCCCcHHHHHHhhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATP----KGILKLMDIDGLTIFHVKSHLQKYR  213 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYR  213 (320)
                      -+|+..|.. |..+||.++.+.    +.|.+.||++.  -..++.|-.||=
T Consensus        49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L   96 (116)
T 2li6_A           49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL   96 (116)
T ss_dssp             CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHH
T ss_pred             ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHH
Confidence            488888876 788999988764    46788899987  456777666653


No 28 
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=33.97  E-value=22  Score=27.76  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHHhCCCCCcchh----hhhhhcCCCCCc--HHHHHHhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATPK----GILKLMDIDGLT--IFHVKSHLQKY  212 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKY  212 (320)
                      -+||+.|.. |..+||.++.+-+    .|.+.||++.-|  -..++.|=.||
T Consensus        44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~   94 (107)
T 2lm1_A           44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI   94 (107)
T ss_dssp             CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            489998876 6789999877643    577889987533  24556655554


No 29 
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.24  E-value=31  Score=27.96  Aligned_cols=46  Identities=17%  Similarity=0.077  Sum_probs=32.3

Q ss_pred             hHHHHHHHHHHHHhCCCCCcchh----hhhhhcCCCCCc--HHHHHHhhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATPK----GILKLMDIDGLT--IFHVKSHLQKYR  213 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKYR  213 (320)
                      -+|++.|.. |..+||.++.+-+    .|.+.||++.-+  ...++.|=.||=
T Consensus        42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L   93 (122)
T 2eqy_A           42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL   93 (122)
T ss_dssp             CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred             ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence            389988876 7889999877643    577889987533  245666666653


No 30 
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=29.63  E-value=47  Score=24.55  Aligned_cols=47  Identities=15%  Similarity=0.129  Sum_probs=33.2

Q ss_pred             CCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhh
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHL  209 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL  209 (320)
                      .++..-.||+|=|..|.+|+...|= +   =..|-+.| |++-|..+|..+-
T Consensus         4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY   50 (70)
T 2crg_A            4 GSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQDF-LPWKSLTSIIEYY   50 (70)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCCHHHHHHHH
Confidence            3466678999999999999999982 1   23333311 5778888877654


No 31 
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=29.59  E-value=29  Score=28.21  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHHHHhCCCCCcch----hhhhhhcCCCCC-c--HHHHHHhhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATP----KGILKLMDIDGL-T--IFHVKSHLQKYR  213 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKYR  213 (320)
                      -+||..|.. |..+||.++.+-    +.|.+.||++.- |  -..++.|-.||=
T Consensus        52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L  104 (128)
T 1c20_A           52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL  104 (128)
T ss_dssp             CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT
T ss_pred             ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence            389998876 778999987764    457788998652 2  355666666653


No 32 
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=29.18  E-value=29  Score=28.11  Aligned_cols=45  Identities=16%  Similarity=0.300  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHhCCCCCcch----hhhhhhcCCCCCc--HHHHHHhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATP----KGILKLMDIDGLT--IFHVKSHLQKY  212 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKY  212 (320)
                      -+||+.|.. |..+||.++.+-    +.|.+.||++.-|  -..++.|-.||
T Consensus        51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~  101 (125)
T 2cxy_A           51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY  101 (125)
T ss_dssp             CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred             ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            389988876 779999987764    3578889998643  23455554444


No 33 
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=28.75  E-value=20  Score=29.40  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHHhCCCCCcch----hhhhhhcCCCCCcHHHHHHhhhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATP----KGILKLMDIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl  214 (320)
                      -+|++.|.. |..+||.++.+.    +.|.+.|+++.  -..++.|-.||=+
T Consensus        48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~   96 (123)
T 1kkx_A           48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL   96 (123)
T ss_dssp             CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred             ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence            478888876 799999988775    46778899987  5667776666544


No 34 
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.48  E-value=1.5e+02  Score=20.85  Aligned_cols=49  Identities=12%  Similarity=0.260  Sum_probs=37.4

Q ss_pred             CCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhh
Q 035950          159 SKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       159 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl  214 (320)
                      ...+-.||+|=..+++++|..+|.    .=..|-+++   |=|-.+|+.|-..|-.
T Consensus         6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~   54 (66)
T 2din_A            6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD   54 (66)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence            445667999999999999999983    334555544   6888999998887743


No 35 
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.38  E-value=32  Score=27.65  Aligned_cols=45  Identities=16%  Similarity=0.038  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHhCCCCCcchh----hhhhhcCCCCCc--HHHHHHhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATPK----GILKLMDIDGLT--IFHVKSHLQKY  212 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtPK----~IL~lM~v~gLT--~~hVkSHLQKY  212 (320)
                      -+|++.|.. |..+||.++.+-+    .|.+.||++.-|  ..+++.|-.||
T Consensus        40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~   90 (117)
T 2jrz_A           40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI   90 (117)
T ss_dssp             CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred             ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            388988876 7889999877653    677889987433  24566666655


No 36 
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.53  E-value=80  Score=23.33  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=35.1

Q ss_pred             cChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          165 WTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       165 WT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      =|+++.++-++++...|--+..|.+.|-+.+|++   ...|..||-+-
T Consensus        11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs---~~tV~~~L~~L   55 (77)
T 1qgp_A           11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGTP---KKEINRVLYSL   55 (77)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCC---HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC---HHHHHHHHHHH
Confidence            3678888899999999844678999999999854   56677776654


No 37 
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=24.41  E-value=1.3e+02  Score=23.85  Aligned_cols=53  Identities=23%  Similarity=0.283  Sum_probs=40.0

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhhccCCCC
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRTARHIPE  220 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~~~  220 (320)
                      +=.||+|=.++++++|.++|.-    =..|-+.  ++|=|-.+|+.|...+.....+|.
T Consensus        62 ~~~WT~eEd~~L~~~v~~~G~~----W~~Ia~~--l~gRt~~~~k~rw~~l~~k~~~p~  114 (126)
T 3osg_A           62 HTPWTAEEDALLVQKIQEYGRQ----WAIIAKF--FPGRTDIHIKNRWVTISNKLGIPQ  114 (126)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSC----HHHHHTT--STTCCHHHHHHHHHHHHHHTTC--
T ss_pred             cccCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHhcCCCC
Confidence            3469999999999999999942    3456554  479999999999877766555554


No 38 
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=24.22  E-value=1.3e+02  Score=22.82  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=35.3

Q ss_pred             ceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhh
Q 035950          162 RIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKY  212 (320)
Q Consensus       162 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY  212 (320)
                      +-.||+|=..+++++|...|.-   .=+.|-+.|  +|=|..+++.|-.+|
T Consensus         4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~   49 (105)
T 1gv2_A            4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH   49 (105)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence            3479999999999999999831   123566665  688999998877665


No 39 
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=24.22  E-value=35  Score=26.12  Aligned_cols=45  Identities=20%  Similarity=0.003  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHhCCCCCcch----hhhhhhcCCCCCc--HHHHHHhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATP----KGILKLMDIDGLT--IFHVKSHLQKY  212 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKY  212 (320)
                      -+|+..|.. |..+||.++.+-    +.|.+.|+++.-+  ...++.|=.||
T Consensus        36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~   86 (96)
T 2jxj_A           36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI   86 (96)
T ss_dssp             CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred             ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence            378888876 788999987764    3577888886432  23455555554


No 40 
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=21.95  E-value=1.7e+02  Score=23.14  Aligned_cols=50  Identities=12%  Similarity=0.127  Sum_probs=38.0

Q ss_pred             CCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhh
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYR  213 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR  213 (320)
                      .+..|-.||+|=.++.+++|.+.|.    .=+.|-+.|  +|=|..+++.+-..|-
T Consensus         7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A            7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL   56 (126)
T ss_dssp             CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence            3466778999999999999999984    345666655  5778888877766653


No 41 
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=21.55  E-value=1.6e+02  Score=24.42  Aligned_cols=52  Identities=19%  Similarity=0.197  Sum_probs=39.0

Q ss_pred             CCCCCCceecChHHHHHHHHHHHHhCC-CCCcchhhhhhhc--CCCCCcHHHHHHhhhh
Q 035950          156 TSHSKTRIRWTQHLHNRFVECVEFLGG-AEKATPKGILKLM--DIDGLTIFHVKSHLQK  211 (320)
Q Consensus       156 ~~~~K~RlrWT~ELH~rFV~AV~qLGG-~~kAtPK~IL~lM--~v~gLT~~hVkSHLQK  211 (320)
                      ...++.|-.||+|=-+..+++|+++|. -.    +.|++.+  ..+|=|-.++|.+...
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W----~~I~~~~~~~~~~RT~vdlKdRWrn   79 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRW----RDVKFRAFENVHHRTYVDLKDKWKT   79 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCH----HHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCCh----HHHHHHhccccCCCCHHHHHHHHHH
Confidence            345788999999999999999999993 32    3566544  2478899999865444


No 42 
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=20.15  E-value=62  Score=26.96  Aligned_cols=45  Identities=24%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHhCCCCCcch----hhhhhhcCCCCC-c--HHHHHHhhhhh
Q 035950          167 QHLHNRFVECVEFLGGAEKATP----KGILKLMDIDGL-T--IFHVKSHLQKY  212 (320)
Q Consensus       167 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKY  212 (320)
                      -+|+..|.. |..+||.++.+-    +.|.+.||++.- |  ...++.|-.||
T Consensus        64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~  115 (145)
T 2kk0_A           64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY  115 (145)
T ss_dssp             CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHH
T ss_pred             ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence            389988876 789999987764    457788998752 1  34566665555


No 43 
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=25.44  E-value=22  Score=27.34  Aligned_cols=51  Identities=14%  Similarity=0.146  Sum_probs=37.3

Q ss_pred             CCCCceecChHHHHHHHHHHHHhCCCCCcchhhhhhhcCCCCCcHHHHHHhhhhhhh
Q 035950          158 HSKTRIRWTQHLHNRFVECVEFLGGAEKATPKGILKLMDIDGLTIFHVKSHLQKYRT  214 (320)
Q Consensus       158 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl  214 (320)
                      +.-.+=.||+|=++.|+++|..+|--    =..|-+.  ++|=|-.+|+.|...|..
T Consensus        12 p~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~--l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           12 ENLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARM--VGSKTVSQCKNFYFNYKK   62 (89)
Confidence            34455689999999999999999831    2344444  468888889888776644


Done!