BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035952
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EAW|A Chain A, Human Ump Synthase (C-Terminal Domain- Orotidine 5'-
Monophosphate Decarboxylase)
pdb|2EAW|B Chain B, Human Ump Synthase (C-Terminal Domain- Orotidine 5'-
Monophosphate Decarboxylase)
pdb|3BGG|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Bmp
pdb|3BGJ|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 6-Iodo-Ump
pdb|3BGJ|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 6-Iodo-Ump
Length = 291
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 173 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 219
>pdb|2QCM|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To 6-Hydroxymethyl-Ump
pdb|2QCF|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To 5-Fluoro-Ump
Length = 260
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 142 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 188
>pdb|2QCD|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To Ump
pdb|2QCE|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
Sulfate, Glycerol, And Chloride
Length = 260
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 142 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 188
>pdb|2QCL|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To Omp
pdb|2QCL|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain (Asp312asn Mutant) Of Human Ump
Synthase Bound To Omp
pdb|3EWU|A Chain A, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Acetyl-Ump, Covalent
Adduct
pdb|3EWU|B Chain B, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Acetyl-Ump, Covalent
Adduct
pdb|3EWW|A Chain A, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Cyano-Ump, Covalent
Adduct
pdb|3EWW|B Chain B, D312n Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Cyano-Ump, Covalent
Adduct
pdb|3EX6|A Chain A, D312n Mutant Of Human Orotidyl-5'-monophosphate
Decarboxylase In Complex With 6-azido-ump, Covalent
Adduct
pdb|3EX6|B Chain B, D312n Mutant Of Human Orotidyl-5'-monophosphate
Decarboxylase In Complex With 6-azido-ump, Covalent
Adduct
Length = 260
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 142 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 188
>pdb|2P1F|A Chain A, Human Ump Synthase (c-terminal Domain-orotidine
5'-monophosphate Decarboxylase)
Length = 291
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 173 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 219
>pdb|3BVJ|A Chain A, Crystal Structure Of Human Orotidine 5'-monophosphate
Decarboxylase Complexed With Xmp
pdb|3BVJ|B Chain B, Crystal Structure Of Human Orotidine 5'-monophosphate
Decarboxylase Complexed With Xmp
pdb|3G3D|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
5-Fluoro-6-Azido-Ump
pdb|3G3D|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
5-Fluoro-6-Azido-Ump
pdb|3MW7|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-Ump(Produced From
5-Fluoro-6-Amino-Ump)
pdb|3MW7|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Fluoro-Ump(Produced From
5-Fluoro-6-Amino-Ump)
pdb|4HIB|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N4-Oh
pdb|4HIB|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N4-Oh
pdb|4HKP|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N3-Oxide
pdb|4HKP|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With Cmp-N3-Oxide
Length = 312
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 194 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 240
>pdb|2QCC|A Chain A, Crystal Structure Of The Orotidine-5'-monophosphate
Decarboxylase Domain Of Human Ump Synthase, Apo Form
pdb|2QCC|B Chain B, Crystal Structure Of The Orotidine-5'-monophosphate
Decarboxylase Domain Of Human Ump Synthase, Apo Form
pdb|2QCD|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To Ump
pdb|2QCG|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Bromo-Ump
pdb|2QCG|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Bromo-Ump
pdb|2QCH|A Chain A, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Iodo-Ump
pdb|2QCH|B Chain B, Crystal Structure Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase Bound To
5-Iodo-Ump
pdb|2QCN|A Chain A, Covalent Complex Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase With
6-Iodo-Ump
pdb|2QCN|B Chain B, Covalent Complex Of The Orotidine-5'-Monophosphate
Decarboxylase Domain Of Human Ump Synthase With
6-Iodo-Ump
pdb|3EWZ|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|C Chain C, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EWZ|D Chain D, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 5-Cyano-Ump
pdb|3EX1|A Chain A, Human Orotidyl-5'-monophosphate Decarboxylase Soaked With
6-cyano-ump, Converted To Ump
pdb|3EX1|B Chain B, Human Orotidyl-5'-monophosphate Decarboxylase Soaked With
6-cyano-ump, Converted To Ump
pdb|3EX2|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Cyano- Ump
pdb|3EX2|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Cyano- Ump
pdb|3EX3|A Chain A, Human Orotidyl-5'-monophosphate Decarboxylase In Complex
With 6-azido- Ump, Covalent Adduct
pdb|3EX3|B Chain B, Human Orotidyl-5'-monophosphate Decarboxylase In Complex
With 6-azido- Ump, Covalent Adduct
pdb|3EX4|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With Bmp
pdb|3L0K|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Acetyl-Ump
pdb|3L0K|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Acetyl-Ump
pdb|3L0N|A Chain A, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Mercapto-Ump
pdb|3L0N|B Chain B, Human Orotidyl-5'-Monophosphate Decarboxylase In Complex
With 6-Mercapto-Ump
Length = 260
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 142 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 188
>pdb|3EWX|A Chain A, K314a Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase In Complex With 6-Azido-Ump, Degraded To
Bmp
pdb|3EWY|A Chain A, K314a Mutant Of Human Orotidyl-5'-Monophosphate
Decarboxylase Soaked With Omp, Decarboxylated To Ump
Length = 260
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 142 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 188
>pdb|3G3M|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By 5-Fluoro-6-Iodo-Ump
pdb|3MI2|A Chain A, Crystal Structure Of Human Orotidine-5'-Monophosphate
Decarb Complexed With Pyrazofurin Monophosphate
pdb|3MI2|B Chain B, Crystal Structure Of Human Orotidine-5'-Monophosphate
Decarb Complexed With Pyrazofurin Monophosphate
Length = 279
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 161 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 207
>pdb|2JGY|A Chain A, The Crystal Structure Of Human Orotidine-5'-Decarboxylase
Domain Of Human Uridine Monophosphate Synthetase (Umps)
pdb|2JGY|B Chain B, The Crystal Structure Of Human Orotidine-5'-Decarboxylase
Domain Of Human Uridine Monophosphate Synthetase (Umps)
pdb|2V30|A Chain A, Human Orotidine 5'-Phosphate Decarboxylase Domain Of
Uridine Monophospate Synthetase (Umps) In Complex With
Its Product Ump.
pdb|2V30|B Chain B, Human Orotidine 5'-Phosphate Decarboxylase Domain Of
Uridine Monophospate Synthetase (Umps) In Complex With
Its Product Ump
Length = 279
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 162 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 208
>pdb|3BK0|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Cn-Ump
pdb|3BK0|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 5-Cn-Ump
pdb|3DBP|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Nh2-Ump
pdb|3DBP|B Chain B, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Complexed With 6-Nh2-Ump
pdb|3MO7|A Chain A, Crystal Structure Of Human Orotidine 5'-Monophosphate
Decarboxylase Covalently Modified By
2'-Fluoro-6-Iodo-Ump
Length = 279
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 28 HKQCLL-EEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKM 75
H+ CLL E S+AT AV + EE FVV GF+S M
Sbjct: 161 HRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVV--GFISGSRVSM 207
>pdb|2RIR|A Chain A, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|B Chain B, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|C Chain C, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|D Chain D, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|E Chain E, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|F Chain F, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|G Chain G, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
pdb|2RIR|H Chain H, Crystal Structure Of Dipicolinate Synthase, A Chain, From
Bacillus Subtilis
Length = 300
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 57 EQERFVVPTGF--LSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAV 108
EQ+ + GF L H F ++ + +E F+Q D +++P S +T + +VS V
Sbjct: 28 EQQADIYLVGFDQLDHG-FTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTV 80
>pdb|2P14|A Chain A, Crystal Structure Of Small Subunit (r.bspd6i2) Of The
Heterodimeric Restriction Endonuclease R.bspd6i
Length = 192
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 85 GFEQKDRLVVPCSVSTFQEIVSAVECSNKRFDFGNLVEELI 125
GF ++ V+P +V F+++V+ ++ + F+ L E LI
Sbjct: 122 GFNKESEPVIPLTVDQFKKLVTQLKGDGEHFNPNKLKEILI 162
>pdb|4FX5|A Chain A, Von Willebrand Factor Type A From Catenulispora Acidiphila
Length = 464
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 34 EEYEDMASMATTPTGFFAVYVGEEQERFVVPTG 66
+E +A T FFAV G E R V PTG
Sbjct: 101 KEATKVAIDTLTDGAFFAVVAGTEGARVVYPTG 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,319,364
Number of Sequences: 62578
Number of extensions: 122302
Number of successful extensions: 242
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 16
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)