BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035952
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var.
radiata GN=ARG7 PE=2 SV=1
Length = 92
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 29 KQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQ 88
++ L E + + P G+ AVYVGE +RFV+P L+ PLF+ LL ++ EFG++
Sbjct: 9 RKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDH 68
Query: 89 K-DRLVVPCSVSTFQEIVSAV 108
L +PCS FQ I S +
Sbjct: 69 PMGGLTIPCSEDLFQHITSCL 89
>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1
Length = 82
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 43 ATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTF 101
A P G+ AVYVGE+ +RFV+P +L+ P F+ LL ++ EFG++ L +PCS F
Sbjct: 15 ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVF 74
Query: 102 QEIVSAV 108
Q I S +
Sbjct: 75 QCITSCL 81
>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1
Length = 82
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 40 ASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSV 98
++ P G+ AVYVGE+ +RFV+P +++ P F+ LL ++ EFG++ L +PCS
Sbjct: 12 SNAVDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSE 71
Query: 99 STFQEIVSAV 108
FQ I +
Sbjct: 72 EVFQRITCCL 81
>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
Length = 90
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 48 GFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKD-RLVVPCSVSTFQEIVS 106
G+ AVYVGE+ RFV+P +L+ P F+ LL ++ EFG+ + L +PCS FQ I S
Sbjct: 28 GYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITS 87
>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
Length = 92
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 46 PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTFQEI 104
P G+ VYVG++ RF++P +L+ P F+ LL ++ EFG++ L +PC F +
Sbjct: 26 PKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTV 85
Query: 105 VS 106
S
Sbjct: 86 TS 87
>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1
Length = 93
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 46 PTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQK-DRLVVPCSVSTFQEI 104
P G+ AVYVG++ RF +P +L+ P F+ LL ++ EFG++ L +PC F +
Sbjct: 27 PKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNV 86
Query: 105 VS 106
+
Sbjct: 87 TA 88
>sp|Q64UQ7|GCSP_BACFR Glycine dehydrogenase [decarboxylating] OS=Bacteroides fragilis
(strain YCH46) GN=gcvP PE=3 SV=1
Length = 949
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 41 SMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKD-------RLV 93
++ T GF+ VY G+E R + H + + LEKS ++ GF+Q + R +
Sbjct: 335 ALLATMAGFYTVYHGQEGIRNIASR---IHSI-TVFLEKSISKLGFKQVNKQYFDTLRFI 390
Query: 94 VPCSVSTFQ--EIVSAVECSNKRFDFGNL 120
+P SVS Q I + E + + FD G++
Sbjct: 391 LPDSVSAQQIRTIALSKEVNLRYFDNGDV 419
>sp|Q5LDN2|GCSP_BACFN Glycine dehydrogenase [decarboxylating] OS=Bacteroides fragilis
(strain ATCC 25285 / NCTC 9343) GN=gcvP PE=3 SV=1
Length = 949
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 41 SMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYNEFGFEQKD-------RLV 93
++ T GF+ VY G+E R + H + + LEKS + GF+Q + R +
Sbjct: 335 ALLATMAGFYTVYHGQEGIRNIASR---IHSI-TVFLEKSIGKLGFKQVNKQYFDTLRFI 390
Query: 94 VPCSVSTFQ--EIVSAVECSNKRFDFGNL 120
+P SVS Q I + E + + FD G++
Sbjct: 391 LPDSVSAQQIRTIALSKEVNLRYFDNGDV 419
>sp|P51767|VPJ_BPP2 Baseplate assembly protein J OS=Enterobacteria phage P2 GN=J PE=4
SV=1
Length = 302
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 23 DKNQPHKQCLLEEYEDMASMATTPTGFFAVYVGEEQERFVVPTGFLSHPLFKMLLEKSYN 82
D NQ ++EE + + +A ++Y ++QE S PL K+L E +Y
Sbjct: 5 DLNQLPAPDVVEELDFESILAERKATLISLYPEDQQEAVARTLTLESEPLVKLLEENAYR 64
Query: 83 EFGFEQK 89
E + Q+
Sbjct: 65 ELIWRQR 71
>sp|Q604Q5|ISPG_METCA 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=ispG PE=3 SV=1
Length = 407
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 89 KDRLVVPCSVSTFQEIVSAVECSNKRFD 116
KDR+V+ C +S QE++S E + R D
Sbjct: 195 KDRIVLSCKMSGVQELISVYEALSSRCD 222
>sp|Q9M3L4|CEMA_SPIOL Chloroplast envelope membrane protein OS=Spinacia oleracea GN=cemA
PE=3 SV=2
Length = 229
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 66 GFLSHPLFKMLLEKSYNEFGFEQKDRLVVPCSVSTFQEIVSAV 108
GF S +++L+E Y +FGF D+ ++ VSTF I+ +
Sbjct: 163 GFHSPQGWELLIESIYKDFGFADNDQ-IISSLVSTFPVILDTI 204
>sp|Q06506|RRP9_YEAST Ribosomal RNA-processing protein 9 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP9 PE=1 SV=1
Length = 573
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 6 MASFKKLAKKVKVMSGGDKNQPHKQCLLE-----EYEDMASMATTPTGFFAVYVGEEQER 60
+ F K KK+K GG K P + E Y+++ ++A +P G + V G +++
Sbjct: 201 ITDFSKRPKKLKYAKGGAKYIPTSKHEYENTTEGHYDEILTVAASPDGKYVVTGGRDRKL 260
Query: 61 FVVPTGFLS 69
V T LS
Sbjct: 261 IVWSTESLS 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,371,383
Number of Sequences: 539616
Number of extensions: 1809024
Number of successful extensions: 3544
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3531
Number of HSP's gapped (non-prelim): 17
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)