BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035953
(168 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 15/108 (13%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
ML K +I S C E++ I +MLS+ N +FYR KDKQ AD + FH + GDH+TL
Sbjct: 54 MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 111
Query: 61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEV 95
L WC EN+IQ +S++RA+DI+ Q+ G++ R +++V
Sbjct: 112 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDV 159
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 25/138 (18%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
ML+ +I S +++C EI+ I AMLS+ N KDK+ AD+A+ F D GDHITL
Sbjct: 525 MLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKK-RADDAKNIFAHPD-GDHITL 582
Query: 61 L-----------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLD 103
L +WC ++Y+ +S+ A +I+ QLE L+ R +E+N D +
Sbjct: 583 LNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT--TDYE 640
Query: 104 AIKF----SKLYAKDFFV 117
+ K+ K A FF+
Sbjct: 641 SPKYFDNIRKALASGFFM 658
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 25/138 (18%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
ML+ +I S +++C EI+ I AMLS+ N KDK+ AD+A+ F D GDHITL
Sbjct: 525 MLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKK-RADDAKNIFAHPD-GDHITL 582
Query: 61 L-----------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLD 103
L +WC ++Y+ +S+ A +I+ QLE L+ R +E+N D +
Sbjct: 583 LNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT--TDYE 640
Query: 104 AIKF----SKLYAKDFFV 117
+ K+ K A FF+
Sbjct: 641 SPKYFDNIRKALASGFFM 658
>pdb|1TKL|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TKL|B Chain B, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
pdb|1TLB|A Chain A, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|D Chain D, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|Q Chain Q, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|S Chain S, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|U Chain U, Yeast Coproporphyrinogen Oxidase
pdb|1TLB|W Chain W, Yeast Coproporphyrinogen Oxidase
Length = 326
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 80 IQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGN 120
I+ Q+E L+ R + E+ L +D +KF D + GN
Sbjct: 10 IRQQMEALIRRKQAEITQGLESIDTVKFH----ADTWTRGN 46
>pdb|1TK1|A Chain A, Yeast Oxygen-Dependent Coproporphyrinogen Oxidase
Length = 260
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 80 IQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
I+ Q+E L+ R + E+ L +D +KF
Sbjct: 7 IRQQMEALIRRKQAEITQGLESIDTVKF 34
>pdb|1H21|A Chain A, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
pdb|1H21|B Chain B, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
pdb|1H21|C Chain C, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
pdb|1H21|D Chain D, A Novel Iron Centre In The Split-Soret Cytochrome C From
Desulfovibrio Desulfuricans Atcc 27774
Length = 247
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 57 HITLLRWCCENYIQVKSMKRAR 78
HI++ +WC EN I+ S +R+
Sbjct: 148 HISVSKWCYENKIEATSKQRSE 169
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 26.6 bits (57), Expect = 6.8, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 34 RLKDKQIHADNA-----RMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLL 88
RL+D+ +NA + H+ D+ + + E + K+ K+ RD+ ++LE L
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLE-----SEKAARNKAEKQKRDLSEELEALK 1157
Query: 89 TRVE 92
T +E
Sbjct: 1158 TELE 1161
>pdb|3CQF|A Chain A, Crystal Structure Of Anthrolysin O (Alo)
pdb|3CQF|B Chain B, Crystal Structure Of Anthrolysin O (Alo)
Length = 489
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 68 YIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDL-------------DAIKFSKLYAKD 114
Y+++++ +++D+Q + LL +E + D+ DA + +K+ KD
Sbjct: 268 YVKLETTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGDAKEHNKVVTKD 327
Query: 115 FFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNP 147
F N ++ N +LS P P
Sbjct: 328 FNEIRN-----------IIKDNAELSFKNPAYP 349
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,605,430
Number of Sequences: 62578
Number of extensions: 166351
Number of successful extensions: 353
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 9
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)