BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035953
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 127 bits (318), Expect = 5e-29, Method: Composition-based stats.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 16/138 (11%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
MLSK I+AS+KY C EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L GDH+ L
Sbjct: 827 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 885
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
L +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++ D I+
Sbjct: 886 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 943
Query: 108 SKLYAKDFFVYGNYSTRS 125
K +F + TRS
Sbjct: 944 RKAITAGYFYHTARLTRS 961
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 127 bits (318), Expect = 5e-29, Method: Composition-based stats.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 16/138 (11%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
MLSK I+AS+KY C EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L GDH+ L
Sbjct: 826 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 884
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
L +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++ D I+
Sbjct: 885 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 942
Query: 108 SKLYAKDFFVYGNYSTRS 125
K +F + TRS
Sbjct: 943 RKAITAGYFYHTARLTRS 960
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 127 bits (318), Expect = 5e-29, Method: Composition-based stats.
Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 16/138 (11%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
MLSK I+AS+KY C EI+ +AAMLS+ NSIFYR KDK +HADNAR+NF L GDH+ L
Sbjct: 823 MLSKMILASEKYSCSEEILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPG-GDHLVL 881
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
L +WC EN++Q +SM+RARD+++QLEGLL RVE+ ++ D I+
Sbjct: 882 LNVYTQWAESGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDY--IRV 939
Query: 108 SKLYAKDFFVYGNYSTRS 125
K +F + TRS
Sbjct: 940 RKAITAGYFYHTARLTRS 957
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 90/162 (55%), Gaps = 24/162 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
+SK IIAS+KY+C EI+ IAAMLS ++FYR K + IHAD+AR F GDHITL+
Sbjct: 790 MSKMIIASEKYECSEEIVTIAAMLSCNAAVFYRPKAQVIHADSARKGF-WSPAGDHITLM 848
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFS 108
RWC ENY+Q ++MKRARD++DQL GLL RVEIE + D IK
Sbjct: 849 NVYNKWQESSFSQRWCVENYVQHRTMKRARDVRDQLVGLLERVEIETKSS---TDTIKIR 905
Query: 109 KLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSLSP 143
K +F G+Y T H + P++ +P
Sbjct: 906 KAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETP 947
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 96/159 (60%), Gaps = 24/159 (15%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNAR-MNFHLGDVGDHIT 59
LSK IIAS+KYKC EI+ I AMLS+GN+IFYR KDK AD AR + FH GDH+T
Sbjct: 890 QLSKMIIASEKYKCSEEILTICAMLSVGNTIFYRPKDKAFAADAARKLFFH--PQGDHLT 947
Query: 60 LL-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
L+ +WC EN+IQ +SMKRA+D++DQLE LL RVEI + N++D D+I+
Sbjct: 948 LMNVFNQWRESGYAVQWCFENFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIR 1007
Query: 107 FSKLYAKDFFVYGNYSTRSLPHA--LYVLPHNTQLSLSP 143
K A FF Y++ L + HN + + P
Sbjct: 1008 --KCIASGFF----YNSAKLEKSGLFRTTKHNQSVQIHP 1040
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 15/120 (12%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
MLSK++IAS KY C+ E++ I +ML +S+FYR KDK + AD AR NF GDH+TL
Sbjct: 842 MLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPG-GDHLTL 900
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLND-LDAIK 106
L W EN++Q KS+ RARD++DQL L RVEIE+ N ++ LD IK
Sbjct: 901 LHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIK 960
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 15/102 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK +I S C E++ I AML++ N IFYR K+KQ HAD + FH + GDH+TLL
Sbjct: 964 LSKLLIMSVDLGCSEEVLTIVAMLNVQN-IFYRPKEKQDHADQKKAKFHQPE-GDHLTLL 1021
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTR 90
WC EN+IQV+SMKRA+DI+ QL G++ R
Sbjct: 1022 AVYNSWKNHHFSQPWCFENFIQVRSMKRAQDIRKQLLGIMDR 1063
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 19/130 (14%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
ML K +I S C E++ I +MLS+ N +FYR KDKQ AD + FH + GDH+TL
Sbjct: 1012 MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 1069
Query: 61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIE-VNCNLNDLDAIK 106
L WC EN+IQ +S++RA+DI+ Q+ G++ R +++ V+C + ++
Sbjct: 1070 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS---TVR 1126
Query: 107 FSKLYAKDFF 116
K FF
Sbjct: 1127 VQKAICSGFF 1136
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 80.1 bits (196), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 19/130 (14%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
ML K +I S C E++ I +MLS+ N +FYR KDKQ AD + FH + GDH+TL
Sbjct: 988 MLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKDKQALADQKKAKFHQTE-GDHLTL 1045
Query: 61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIE-VNCNLNDLDAIK 106
L WC EN+IQ +S++RA+DI+ Q+ G++ R +++ V+C + ++
Sbjct: 1046 LAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKS---TVR 1102
Query: 107 FSKLYAKDFF 116
K FF
Sbjct: 1103 VQKAICSGFF 1112
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 77.4 bits (189), Expect = 4e-14, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 24/162 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK ++AS C EI+ + AM+ GN IFYR ++KQ AD R F + GDH+TLL
Sbjct: 939 LSKMLLASVDLGCSDEILTMIAMIQTGN-IFYRPREKQAQADQKRAKFFQPE-GDHLTLL 996
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFS 108
WC EN+IQ +S++RA+D++ QL ++ + +++V + I+
Sbjct: 997 AVYEAWKAKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIR-- 1054
Query: 109 KLYAKDFFVYG-------NYSTRSLPHALYVLPHNTQLSLSP 143
K FF +G Y T +Y+ P + P
Sbjct: 1055 KAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQP 1096
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
LSK +IAS C EI+ + AMLS+ N +FYR K+KQ AD + F + GDH+TL
Sbjct: 931 QLSKMLIASVDLGCSDEILTVVAMLSVQN-VFYRPKEKQALADQKKAKFFQPE-GDHLTL 988
Query: 61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKF 107
L WC EN++Q +S++RA+D++ QL ++ R ++++ + K
Sbjct: 989 LNVYESWKNSKFSNPWCFENFVQARSLRRAQDVRKQLITIMDRYKLDIISAGRNY--TKI 1046
Query: 108 SKLYAKDFFVYGN-------YSTRSLPHALYVLPHNTQLSLSP 143
K FF + Y T +Y+ P +T + +P
Sbjct: 1047 QKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNP 1089
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 72/118 (61%), Gaps = 16/118 (13%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK II ++ YKC EII I +MLS+ S+FYR K++ +D AR F++ + DH+ LL
Sbjct: 915 LSKLIIIAEDYKCTEEIITIVSMLSVP-SVFYRPKERAEESDAAREKFNVPE-SDHLMLL 972
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
WC ++++ K++KRARDI+ QL ++++ +I + +++D D ++
Sbjct: 973 NIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLE-SVSDWDIVR 1029
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 19/155 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LS+++++S +C EI+ I +MLS+ N +FYR KD+Q+ AD+ + FH GDH+TLL
Sbjct: 907 LSRSLLSSVDNQCSDEIVTIISMLSVQN-VFYRPKDRQLEADSKKAKFH-HPYGDHLTLL 964
Query: 62 ----RW---------CCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFS 108
RW C N++ + +KRARD++ Q+ + ++ +++ +D D I+
Sbjct: 965 NVYTRWQQANYSEQYCKTNFLHFRHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIR-- 1022
Query: 109 KLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSP 143
K + FF+ N + R + T++ + P
Sbjct: 1023 KTFVSGFFM--NAAKRDSQVGYKTINGGTEVGIHP 1055
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 66/118 (55%), Gaps = 15/118 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK ++ + + C E++ I +MLS+ +FYR K++Q AD AR F + DH+TLL
Sbjct: 789 LSKILLIAVRNGCSDEMLTIVSMLSVPQ-VFYRPKERQKEADIARNKFFIAK-SDHLTLL 846
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
WC ++++Q KS+ RARDI+DQL +L +I V + D D IK
Sbjct: 847 NVFEQWRANNFSSHWCNKHFVQYKSLVRARDIRDQLLTILKSQKIPVISSGKDWDIIK 904
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 25/138 (18%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
ML+ +I S +++C EI+ I AMLS+ N KDK+ AD+A+ F D GDHITL
Sbjct: 525 MLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKK-RADDAKNIFAHPD-GDHITL 582
Query: 61 L-----------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLD 103
L +WC ++Y+ +S+ A +I+ QLE L+ R +E+N D +
Sbjct: 583 LNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT--TDYE 640
Query: 104 AIKF----SKLYAKDFFV 117
+ K+ K A FF+
Sbjct: 641 SPKYFDNIRKALASGFFM 658
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 61/105 (58%), Gaps = 15/105 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK +I S + C EI+ IAAMLS N F R KD +I AD+A+ +F D GDH+T+L
Sbjct: 498 LSKMLIVSAERSCSNEILTIAAMLSAPNC-FMRPKDNRIEADSAKKSFDHFD-GDHLTML 555
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
WC +N++ +++K+A ++ QL +LTR ++
Sbjct: 556 NVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVRSQLARILTRFKL 600
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 15/102 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK +I S + C E++ I AMLS+ N I+ R ++KQ AD R F + DH+TLL
Sbjct: 935 LSKVLITSVELGCSEEMLSIIAMLSVPN-IWSRPREKQQEADRQRAQFANPE-SDHLTLL 992
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTR 90
WC E+YIQ + M+RA D++ QL L+ R
Sbjct: 993 NVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDR 1034
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 68/118 (57%), Gaps = 15/118 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK +I S + C E++ I +MLS+ +IF+R K ++ AD + F + + DH+T L
Sbjct: 865 LSKMLIMSAEMGCSDEVLTIVSMLSV-PAIFFRPKGREEEADAKKEKFQVPE-SDHLTFL 922
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
+WC +NY+ VK++K+ R+++ QL+ ++ +++ + N ++ D ++
Sbjct: 923 NVYIQWRTHKYSAKWCADNYLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVR 980
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 16/116 (13%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L+K +IAS Y C EI+ + AMLS+ F R + + AD A+M F D GDH+TLL
Sbjct: 339 LAKMVIASTDYSCSNEILSVTAMLSVPQC-FLRPNEAKKLADEAKMRFAHID-GDHLTLL 396
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIE-VNCNLNDLD 103
+WC +N+IQ +S+K A ++ QL ++ R ++ + N N D
Sbjct: 397 NVYHAFKQNNEDPQWCYDNFIQYRSLKSADSVRQQLARIMDRFALQRTSTNFNSKD 452
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
M +K ++ S + C EI+ IAAM+ I N IF +++ HA F + + GDH+T+
Sbjct: 491 MFAKMLLESGNFGCSQEILSIAAMMQIQN-IFVVPPNQKSHAIRVHRKFAVEE-GDHLTM 548
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK- 106
L +WC E+++ K + RA +++QL+ LL + ++ + D D +
Sbjct: 549 LNIYEAFIKHNKDSKWCQEHFLNYKGLVRAATVREQLKKLLVKFQVPRKSSEGDPDLVLR 608
Query: 107 --FSKLYAK--DFFVYGNYSTRSLPHALYVLPHNTQLSLSPP 144
S +A F G Y T H L++ P + + PP
Sbjct: 609 CIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPP 650
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 15/107 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
+SK +I S ++ C EI+ ++AMLS+ N F R ++ Q AD A+ F D GDH+TLL
Sbjct: 502 MSKMLIVSPEFNCSNEILSVSAMLSVPN-CFVRPREAQKAADEAKARFGHID-GDHLTLL 559
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEV 95
WC EN++ ++MK A +++ QL +++R +++
Sbjct: 560 NVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRFNLKM 606
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
M +K ++ S + C EI+ IAAM+ I N IF +++ A F + + GDH+T+
Sbjct: 491 MFAKMLLESGNFGCSQEILSIAAMMQIQN-IFVVPPNQKSQAIRVHRKFAVEE-GDHLTM 548
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK- 106
L +WC E+++ K + RA +++QL+ LL + ++ + D D +
Sbjct: 549 LNVYEAFIKHNKNSQWCQEHFLNYKGLVRAATVREQLKKLLVKFQVPKKSSEGDPDPVLR 608
Query: 107 --FSKLYAK--DFFVYGNYSTRSLPHALYVLPHNTQLSLSPP 144
S +A F G Y T H L++ P + + PP
Sbjct: 609 CIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPP 650
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 59.7 bits (143), Expect = 9e-09, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK +I S C EI++I +MLS+ +IFYR K ++ +D R F + + DH+T L
Sbjct: 955 LSKMLIVSCDMGCSSEILLIVSMLSV-PAIFYRPKGREEESDQIREKFAVPE-SDHLTYL 1012
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
WC +++I K+M++ R+++ QL+ ++ + + + D D ++
Sbjct: 1013 NVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVR 1070
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%), Gaps = 15/118 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK +I S C EI++I +MLS+ +IFYR K ++ +D R F + + DH++ L
Sbjct: 955 LSKMLIVSCDMGCSSEILLIVSMLSV-PAIFYRPKGREEESDQIREKFAVPE-SDHLSYL 1012
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
WC +++I K+M++ R+++ QL+ ++ + + + D D ++
Sbjct: 1013 NVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVR 1070
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L+K +IAS Y C E++ I AMLS+ F R + + AD A+M F D GDH+TLL
Sbjct: 571 LAKMVIASCDYNCSNEVLSITAMLSVPQ-CFVRPTEAKKAADEAKMRFAHID-GDHLTLL 628
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
+WC +N+I +S+ A +++ QL ++ R +
Sbjct: 629 NVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNL 673
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L+K +IAS Y C E++ I AMLS+ F R + + AD A+M F D GDH+TLL
Sbjct: 571 LAKMVIASCDYNCSNEVLSITAMLSVPQ-CFVRPTEAKKAADEAKMRFAHID-GDHLTLL 628
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
+WC +N+I +S+ A +++ QL ++ R +
Sbjct: 629 NVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNL 673
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L+K +IAS Y C E++ I AMLS+ F R + + AD A+M F D GDH+TLL
Sbjct: 571 LAKMVIASCDYNCSNEVLSITAMLSVPQ-CFVRPTEAKKAADEAKMRFAHID-GDHLTLL 628
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
+WC +N+I +S+ A +++ QL ++ R +
Sbjct: 629 NVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNL 673
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 29/156 (18%)
Query: 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL 60
M SK ++ S ++ C E++ I AM+ I +F ++ AD R F + + GDH+T+
Sbjct: 510 MHSKCLLKSAEFGCSTEMVTIVAMMQI-QDVFITPYRQRHQADVIRKKFAVEE-GDHMTM 567
Query: 61 L-------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIE-------VNCNLN 100
L +WC ++++ + + RA +++ QL LL R EIE +NC+ N
Sbjct: 568 LNVFTKFVENGRSKKWCSDHFVNYRGLMRADNVRSQLVRLLKRFEIEKVSSRGLINCSEN 627
Query: 101 DLDAIK---FSKLYAKDFFVYGNYST--RSLPHALY 131
+ FS+ A + G Y T S P +Y
Sbjct: 628 IRQCLVTGFFSQ--AAQYHYTGKYMTVKESFPFNMY 661
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
+KTI+ S K+ C EI+ I ++LS+ +S+ Y ++ + R F + GDHITLL
Sbjct: 497 FAKTILLSSKFHCTEEILTIVSLLSV-DSVLYNPPARRDEVQSVRKKF-ISSEGDHITLL 554
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
WC EN++ K+M +++ QL + ++ + + + D+++++
Sbjct: 555 NIYRTFKNIGGNKDWCKENFVNSKNMLLVAEVRAQLREICLKMSMPIMSSRGDMESVR 612
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
+KTI+ S K+ C EI+ I ++LS+ +S+ + ++ R F + GDH+TLL
Sbjct: 506 FAKTILMSPKFHCTEEILTIVSLLSV-DSVLHNPPSRREEVQGVRKKF-ISSEGDHMTLL 563
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIK 106
WC EN++ K+M +++ QL + ++ + + + D+++++
Sbjct: 564 NIYRTFKNLGGNKDWCKENFVNSKNMTLVAEVRAQLRDICLKMSMPIASSRGDVESVR 621
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 15/102 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L+K +I S + C EI+ I AMLS+ + R + + AD A+ F D GDH+TLL
Sbjct: 515 LAKMLITSTELNCSNEILSITAMLSVPQC-WVRPNEMRTEADEAKARFAHID-GDHLTLL 572
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTR 90
+WC +N+I ++MK A ++ QL ++ +
Sbjct: 573 NVYHSFKQNQEDPQWCYDNFINYRTMKTADTVRTQLSRVMDK 614
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 18/106 (16%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLK--DKQIHADNARMNFHLGDVGDHIT 59
L K I+ +++ E I++AA+++ +SIF R+ D ++ AD ++ F D GD T
Sbjct: 729 LGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQF-CNDNGDLFT 787
Query: 60 LL---------------RWCCENYIQVKSMKRARDIQDQLEGLLTR 90
LL +WC EN + KSM+R D +LE + R
Sbjct: 788 LLSVYKEWASLPRDRRNKWCWENSLNAKSMRRCEDTVKELEICIER 833
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 15/107 (14%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L+ +I S ++ C E++ + A+LS+ N +F R + AD R F D GDH+TLL
Sbjct: 508 LAVMLIRSPEFYCSNEVLSLTALLSVPN-VFVRPNSARKLADEMRQQFTHPD-GDHLTLL 565
Query: 62 R-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEV 95
WC +++ +++ A +++ QL + R E+E+
Sbjct: 566 NVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVEL 612
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 17/98 (17%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L++ ++A+ ++ CL E+I + + LS +S+F ++K+ A AR+ F L GD +T L
Sbjct: 519 LARAVLAAREHNCLSEVIDVVSCLST-DSMFLFPQEKRDEAIEARLKF-LHSEGDLLTCL 576
Query: 62 ---------------RWCCENYIQVKSMKRARDIQDQL 84
+WC +N+I +++K DI+ QL
Sbjct: 577 NALRQYLESSHDSRKQWCSQNFINRRALKTILDIRKQL 614
>sp|Q9HE06|YK99_SCHPO Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
C20H4.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPAC20H4.09 PE=3 SV=1
Length = 647
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
+SK ++ S+++ C EI+ IA++L+ G + + A A +F + GD IT L
Sbjct: 452 ISKALLTSNQFGCTHEILSIASILTAGEVFYNPTSSSKNDAFVAHSSF-FANEGDIITAL 510
Query: 62 -------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFS 108
+WC +NY+ +++++A DI+ L L + I L D K
Sbjct: 511 NVFESFVGNKKDLQWCRKNYLNYQTLRQALDIRTHLVRFLNKFSIPTAQRLPSSDCSKIL 570
Query: 109 KLYAKDF 115
K F
Sbjct: 571 KCLLDGF 577
>sp|Q7L7V1|DHX32_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Homo sapiens GN=DHX32 PE=1 SV=1
Length = 743
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK+I+AS ++ C+ E++ IAAM++ N + + A F L GDH TL+
Sbjct: 490 LSKSILASCEFDCVDEVLTIAAMVTAPNCFSHVPHGAEEAALTCWKTF-LHPEGDHFTLI 548
Query: 62 --------------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
+WC + ++ +++ A I+ +L ++ R+E+
Sbjct: 549 SIYKAYQDTTLNSSSEYCVEKWCRDYFLNCSALRMADVIRAELLEIIKRIEL 600
>sp|Q924H9|DQX1_MOUSE ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1
Length = 718
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 44/178 (24%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYR---------LKDKQIHADNARMNFHLG 52
L+K ++AS ++ C+ E++ +AAML+ F R L+ HAD
Sbjct: 474 LAKALLASCEFNCVDEMLTLAAMLTAAPG-FTRPPLSAGEAALRRALEHAD--------- 523
Query: 53 DVGDHITLLR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVN--- 96
GDH +L++ WC + +S+ +AR ++ +L L+ R+E+ ++
Sbjct: 524 --GDHSSLIQVYEAFVQSGADEAWCQARGLNWESLCQARKLRAELVELMQRIELPLSQPA 581
Query: 97 ----CNLNDLDAIKFSKLY---AKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNP 147
N DL S + A+D GNY + H + P+ + + P P
Sbjct: 582 FGSEQNRRDLQKALLSGYFLKVARDTDGTGNYLLLTHKHVAQLSPYCSYRNRRTPAQP 639
>sp|Q3ZBE0|DQX1_BOVIN ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1
Length = 719
Score = 38.9 bits (89), Expect = 0.017, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDV-GDHITL 60
L+K ++AS ++ C+ E++ +AAML+ F R + A+ A + L V GDH +L
Sbjct: 476 LAKALLASCEFDCVDEMLTLAAMLTAAPG-FTR---PPVCAEEAALRRALEHVDGDHSSL 531
Query: 61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC-------NLN 100
++ WC + ++ +AR ++ +L L+ R+E+ ++ N
Sbjct: 532 IQVYEAFIQSGADKAWCQARGLNWAALCQARKLRGELLELMQRIELPLSQPAFGSERNRR 591
Query: 101 DLDAIKFSKLY---AKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNP 147
DL S + A+D GNY + H + P+ S P P
Sbjct: 592 DLQKALVSGYFLKVARDTDGTGNYLLLTHKHVAQLSPNCCYRSRRAPARP 641
>sp|Q5XH12|DHX32_XENLA Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Xenopus laevis GN=dhx32 PE=2 SV=1
Length = 748
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK+I+A+ ++ C+ E++ +AAM++ N F L + D GDH TL+
Sbjct: 492 LSKSILAACEFDCVDEMLTLAAMVTAPNC-FIDLPPEAKELDLIGKGKFFHPEGDHFTLI 550
Query: 62 --------------------RWCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
+WC + + +++ AR I+++L ++ R+E+
Sbjct: 551 NIYNEYEQMKRNNASQYDVEKWCQNHCLSFVALEMARAIRNELLDIMRRIEL 602
>sp|Q8NDG6|TDRD9_HUMAN Putative ATP-dependent RNA helicase TDRD9 OS=Homo sapiens GN=TDRD9
PE=2 SV=3
Length = 1382
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 38/158 (24%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNAR--MNFHLGDVGDHIT 59
L K I+ + CL E +IIAA LS+ N F+ + +Q H D R +NF D I
Sbjct: 607 LGKLIVLGHVFGCLDECLIIAAALSLKN--FFAMPFRQ-HLDGYRNKVNFSGSSKSDCIA 663
Query: 60 L----------------------LRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC 97
L L W NYIQ+K ++ ++ ++L+ +++ + V+
Sbjct: 664 LVEAFKTWKACRQTGELRYPKDELNWGRLNYIQIKRIREVAELYEELKTRISQFNMHVDS 723
Query: 98 NLNDLDAIKFSKLYAKDFFV--------YGNYSTRSLP 127
+D +Y + F + Y NY T P
Sbjct: 724 RRPVMDQ---EYIYKQRFILQVVLAGAFYPNYFTFGQP 758
>sp|Q8BZS9|DHX32_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32
OS=Mus musculus GN=Dhx32 PE=2 SV=2
Length = 744
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
LSK+I+AS ++ C+ E++ IAAM++ + + + A F L GDH TL+
Sbjct: 491 LSKSILASCEFDCVDEMLTIAAMVTAPSCFLHVPHGAEEAAVTCWKTF-LHPEGDHFTLI 549
Query: 62 R--------------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEI 93
WC + ++ +++ A I+ +L ++ R+E+
Sbjct: 550 NVYNAYQDTVLNSANEHCVEMWCHDCFLSCSALRMADVIRAELLEIIKRIEL 601
>sp|Q7NRS0|PSRP_CHRVO Putative phosphoenolpyruvate synthase regulatory protein
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=CV_3710 PE=3 SV=1
Length = 273
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 90 RVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPAA 149
R+E VN +LN D +K L+ D + G + P LY+ + + PL P
Sbjct: 126 RIEA-VNFSLNHDDGVKLKDLHEADVILVGVSRSGKTPTCLYLALQYGIRAANYPLTPED 184
Query: 150 VGHSRSP----PFKSKIYGCII 167
+G P PFK K++G I
Sbjct: 185 LGSPTLPKMLLPFKDKMFGLTI 206
>sp|B8A4F4|TDRD9_DANRE Putative ATP-dependent RNA helicase TDRD9 OS=Danio rerio GN=tdrd9
PE=2 SV=1
Length = 1342
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 26/138 (18%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITL- 60
L K I+ + CL E +IIAA LS+ S F +Q+ ++++F D I
Sbjct: 564 LGKLIVLGHVFGCLEECLIIAASLSL-KSFFAMPSLQQLAGYRSKLSFAQNVPSDFIAYV 622
Query: 61 ---------------------LRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNL 99
L W EN IQ+K ++ ++ + L+ ++R + ++ +
Sbjct: 623 NAFKAWYTSRAKGELRHPKDELEWGKENCIQIKRIREVAELFEDLKKRVSRFNMHISSSS 682
Query: 100 NDLDAIKFSKLYAKDFFV 117
N D ++ L+ + F +
Sbjct: 683 NPTD---YTSLHKQRFIL 697
>sp|Q3MHU3|TDRD9_RAT Putative ATP-dependent RNA helicase TDRD9 OS=Rattus norvegicus
GN=Tdrd9 PE=2 SV=3
Length = 1384
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHL---------- 51
L K I+ + CL E +IIAA LS+ N F+ + +Q H D R H
Sbjct: 609 LGKLIVLGHVFGCLDECLIIAAALSLKN--FFTMPFRQ-HLDGYRNKVHFSGSSRSDCLA 665
Query: 52 --------------GDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVN 96
G++ L W NYIQ+K ++ ++ ++L+ +++ + V+
Sbjct: 666 LVEAFRAWQACRQRGELRHPKDELDWGRLNYIQIKRIREVAELYEELKNRISQFNMFVD 724
>sp|Q14BI7|TDRD9_MOUSE Putative ATP-dependent RNA helicase TDRD9 OS=Mus musculus GN=Tdrd9
PE=1 SV=3
Length = 1383
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHL---------- 51
L K ++ + CL E +IIAA LS+ N F+ + +Q H D R H
Sbjct: 608 LGKLVVLGHVFGCLDECLIIAAALSLKN--FFTMPFRQ-HLDGYRNKVHFSGSSRSDCLA 664
Query: 52 --------------GDVGDHITLLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC 97
G++ L W NYIQ+K ++ ++ ++L+ +++ + V
Sbjct: 665 LVEAFRAWQACRQRGELRRPKDELDWGRLNYIQIKRIREVAELYEELKNRISQFNMFVGP 724
Query: 98 NLNDLD 103
+ LD
Sbjct: 725 HHPVLD 730
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 19/115 (16%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFH----------- 50
L++ ++ + K+ C+ E +II + LSI + R DKQ +D FH
Sbjct: 502 LARMVLEAQKHGCVREAMIITSALSIQDP-RERPMDKQQASDEKHRRFHDKESDFLAFVN 560
Query: 51 ----LGDVGDHIT---LLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCN 98
LG+ ++ R C +Y+ ++ +DI QL ++ + I VN
Sbjct: 561 LWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSE 615
>sp|Q8TE96|DQX1_HUMAN ATP-dependent RNA helicase DQX1 OS=Homo sapiens GN=DQX1 PE=2 SV=2
Length = 717
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 28/170 (16%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDV-GDHITL 60
L+K ++AS ++ C+ E++ +AAML+ F R + A+ A + L GDH +L
Sbjct: 474 LAKALLASCEFDCVDEMLTLAAMLTAAPG-FTR---PPLSAEEAALRRALEHTDGDHSSL 529
Query: 61 LR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC-------NLN 100
++ WC + ++ +A ++ +L L+ R+E+ ++ N
Sbjct: 530 IQVYEAFIQSGADEAWCQARGLNWAALCQAHKLRGELLELMQRIELPLSLPAFGSEQNRR 589
Query: 101 DLDAIKFSKLY---AKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNP 147
DL S + A+D GNY + H + + S P P
Sbjct: 590 DLQKALVSGYFLKVARDTDGTGNYLLLTHKHVAQLSSYCCYRSRRAPARP 639
>sp|C1DCN2|PSRP_LARHH Putative phosphoenolpyruvate synthase regulatory protein
OS=Laribacter hongkongensis (strain HLHK9) GN=LHK_02669
PE=3 SV=1
Length = 274
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 89 TRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRSLPHALYVLPHNTQLSLSPPLNPA 148
TR+E VN +LN D +K L D + G + P LY+ + + PL P
Sbjct: 126 TRIEA-VNFSLNHDDGVKLKDLAEADVILVGVSRSGKTPTCLYLALQYGIKAANYPLTPE 184
Query: 149 AVGHSRSP----PFKSKIYGCII 167
+ P P++ KI+G I
Sbjct: 185 DLDSPTLPKMLLPYRKKIFGLTI 207
>sp|P13099|TOP3_YEAST DNA topoisomerase 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP3 PE=1 SV=1
Length = 656
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 88 LTRVEIEVNC----NLN---DLDAIKFSKLYAKDFFVYGNYSTRSLPHAL 130
LT VE++ NC LN LDA + KLY K F Y T + PHA+
Sbjct: 321 LTTVELQKNCARYLRLNAKQSLDAAE--KLYQKGFISYPRTETDTFPHAM 368
>sp|O60114|YG65_SCHPO Uncharacterized helicase C15C4.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC15C4.05 PE=3 SV=1
Length = 1428
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLL 61
L K ++ YKC+ I AML+IG S F + D + A+ AR++F + + L+
Sbjct: 1119 LGKILVLGCFYKCVDAASSIVAMLTIG-SPFRKSVDNEFSANKARLSFAKENTRSDLVLM 1177
Query: 62 RWC 64
+
Sbjct: 1178 YYA 1180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,186,249
Number of Sequences: 539616
Number of extensions: 2183339
Number of successful extensions: 6455
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6377
Number of HSP's gapped (non-prelim): 54
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)