Query 035953
Match_columns 168
No_of_seqs 107 out of 1097
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0924 mRNA splicing factor A 100.0 2.2E-41 4.8E-46 295.7 6.6 157 2-167 780-956 (1042)
2 KOG0922 DEAH-box RNA helicase 100.0 4E-40 8.6E-45 287.5 9.6 158 1-167 472-650 (674)
3 KOG0925 mRNA splicing factor A 100.0 1.4E-39 3.1E-44 276.3 12.1 157 1-167 469-650 (699)
4 PRK11131 ATP-dependent RNA hel 100.0 2.3E-35 5.1E-40 275.8 12.4 158 1-168 497-681 (1294)
5 KOG0923 mRNA splicing factor A 100.0 3E-33 6.6E-38 244.1 9.6 157 1-165 688-864 (902)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 9.7E-30 2.1E-34 238.6 13.4 158 1-168 488-671 (1283)
7 KOG0920 ATP-dependent RNA heli 99.9 2E-24 4.4E-29 196.7 13.1 160 1-166 628-831 (924)
8 KOG0926 DEAH-box RNA helicase 99.7 2.6E-18 5.6E-23 153.6 6.0 155 1-164 786-1002(1172)
9 PF07717 OB_NTP_bind: Oligonuc 99.7 2.5E-17 5.5E-22 117.4 7.1 79 82-167 1-99 (114)
10 COG1643 HrpA HrpA-like helicas 99.6 1.7E-16 3.6E-21 145.1 3.5 157 1-165 469-681 (845)
11 PF04408 HA2: Helicase associa 99.2 4E-12 8.7E-17 89.2 1.5 59 1-61 33-102 (102)
12 KOG0921 Dosage compensation co 99.0 1.4E-09 2.9E-14 99.3 7.1 149 1-155 857-1046(1282)
13 smart00847 HA2 Helicase associ 98.9 6.7E-10 1.4E-14 76.0 1.4 58 1-61 33-92 (92)
14 PRK11664 ATP-dependent RNA hel 97.9 7.8E-05 1.7E-09 69.4 9.2 122 1-166 420-551 (812)
15 TIGR01970 DEAH_box_HrpB ATP-de 97.9 0.00011 2.4E-09 68.4 10.0 123 1-155 417-548 (819)
16 PF03855 M-factor: M-factor; 54.2 7.5 0.00016 22.3 1.0 36 131-168 7-44 (44)
17 PF03288 Pox_D5: Poxvirus D5 p 28.3 1.6E+02 0.0035 19.0 4.6 34 55-90 25-59 (86)
18 PF10281 Ish1: Putative stress 24.6 1.2E+02 0.0027 16.7 3.0 18 82-99 7-24 (38)
19 PF14893 PNMA: PNMA 23.0 80 0.0017 26.7 2.8 50 58-125 3-53 (331)
20 PRK13694 hypothetical protein; 20.3 96 0.0021 20.9 2.1 21 63-83 41-61 (83)
No 1
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=295.66 Aligned_cols=157 Identities=31% Similarity=0.560 Sum_probs=151.3
Q ss_pred eeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-------------HHHHcc
Q 035953 2 LSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-------------WCCENY 68 (168)
Q Consensus 2 lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~n~ 68 (168)
|+||||.|..+||.+|+++||||||| ..+|++|++..++++.+|.+|..++ |||+|+|| ||.+|+
T Consensus 780 lsKmll~a~~~Gc~dEilsIvSmLSv-p~VF~rpker~eead~ar~Kf~~~~-sDhLTlLNVf~qw~~~~~~~~WCnd~~ 857 (1042)
T KOG0924|consen 780 LSKMLLMAARMGCSDEILSIVSMLSV-PAVFYRPKEREEEADAAREKFQVPE-SDHLTLLNVFNQWRKNKYSSMWCNDHY 857 (1042)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHhcc-cceeeccccchhhhhhHHhhhcCCC-CchhhHHHHHHHHHhcCCchhhhhhhh
Confidence 79999999999999999999999999 7999999999999999999999999 99999999 999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCC
Q 035953 69 IQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSL 141 (168)
Q Consensus 69 l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~ 141 (168)
|+.++|+.|.++|+||+++++++++++.++ .+|+.|+|| ||+|||. .|.|.++.+|.++++||||+|++.
T Consensus 858 l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKC--Ics~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~ 934 (1042)
T KOG0924|consen 858 LQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKC--ICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGL 934 (1042)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHH--HHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcC
Confidence 999999999999999999999999999998 799999999 9999999 578999999999999999999996
Q ss_pred CCCCCCeeEEEecCCCCcccceeEec
Q 035953 142 SPPLNPAAVGHSRSPPFKSKIYGCII 167 (168)
Q Consensus 142 ~~p~~~~vvy~e~~~~~tsk~y~~~~ 167 (168)
..| ++|||+|++ +|+|.|+||+
T Consensus 935 y~p--~Yivyhel~--~T~keym~cv 956 (1042)
T KOG0924|consen 935 YTP--DYIVYHELL--MTTKEYMQCV 956 (1042)
T ss_pred CCC--CeeeehHHH--HhHHHHHHHH
Confidence 566 999999999 9999999985
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-40 Score=287.46 Aligned_cols=158 Identities=35% Similarity=0.561 Sum_probs=149.1
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHH-HHHHhhccccCCCChHHHHHH-------------HHHH
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIH-ADNARMNFHLGDVGDHITLLR-------------WCCE 66 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~-~~~~r~~f~~~~~sDhltll~-------------wC~~ 66 (168)
+++|||+.|.++||++|+++||||||+ +++|.+|.+.+.+ ++..|.+|..++ |||+|+|+ ||.+
T Consensus 472 ~lsk~ll~s~~~gc~~e~l~i~a~Lsv-~~~f~~p~~~~~~~a~~~~~kf~~~e-GDh~tlL~vy~~~~~~~~~~~wC~e 549 (674)
T KOG0922|consen 472 HLSKMLLKSSELGCSEEILTIAAMLSV-QSVFSRPKDKKAEDADRKRAKFANPE-GDHLTLLNVYESWKENGTSKKWCKE 549 (674)
T ss_pred chhhhhhhccccCCcchhhhheeeeec-cceecCccchhhhhhhHHHHhhcCcc-cCHHHHHHHHHHHHhcCChhhHHHH
Confidence 479999999999999999999999999 6999999988877 899999999999 99999999 9999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccC
Q 035953 67 NYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQL 139 (168)
Q Consensus 67 n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~ 139 (168)
||||.++|+.|.+||+||.+++++.+++..+++.+.+.|++| ||+|||. ++.|+|+.+|++|+|||||+|+
T Consensus 550 n~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~--l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~ 627 (674)
T KOG0922|consen 550 NFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKC--LCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLF 627 (674)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHH--HHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhh
Confidence 999999999999999999999999999998888899999999 9999999 3349999999999999999999
Q ss_pred CCCCCCCCeeEEEecCCCCcccceeEec
Q 035953 140 SLSPPLNPAAVGHSRSPPFKSKIYGCII 167 (168)
Q Consensus 140 ~~~~p~~~~vvy~e~~~~~tsk~y~~~~ 167 (168)
.. .| +||||+|++ +|||.|+|.+
T Consensus 628 ~~-~p--~~viy~el~--~Ttk~Y~r~V 650 (674)
T KOG0922|consen 628 RR-KP--EWVIYHELL--QTTKEYMRNV 650 (674)
T ss_pred cC-CC--CEEEEEEEe--ecchHhHhhe
Confidence 84 46 999999999 9999999975
No 3
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=276.32 Aligned_cols=157 Identities=26% Similarity=0.442 Sum_probs=147.2
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccCh-hhHHHHHHHhhccccCCCChHHHHHH-------------HHHH
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLK-DKQIHADNARMNFHLGDVGDHITLLR-------------WCCE 66 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~-~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~ 66 (168)
+++||||.|.+|+|++|+++|+||||+ .+.|++|. +.++.++.+|+.|++.+ |||+|++| ||++
T Consensus 469 qLAkmLi~S~efnCsnEiLsisAMLsv-PncFvRp~~~a~kaAdeak~~faH~d-GDHlTLlnVYhAfkq~~~~~~WC~~ 546 (699)
T KOG0925|consen 469 QLAKMLIGSCEFNCSNEILSISAMLSV-PNCFVRPTSSASKAADEAKETFAHID-GDHLTLLNVYHAFKQNNEDPNWCYD 546 (699)
T ss_pred HHHHHHhhcCCCCchHHHHHHHhcccC-CccccCCChhHHHHHHHHHHHhccCC-cchHHHHHHHHHHHhcCCChhHHHH
Confidence 579999999999999999999999999 79999998 77888999999999999 99999999 9999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCccccCC----CCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCC
Q 035953 67 NYIQVKSMKRARDIQDQLEGLLTRVEIEVNCN----LNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPH 135 (168)
Q Consensus 67 n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~----~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPs 135 (168)
||||+++|+.|.++|.||.++|++++++..+. .+...+|||| +++|||+ +|.|.|+++++.|.+|||
T Consensus 547 ~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKA--LvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps 624 (699)
T KOG0925|consen 547 NFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKA--LVSGYFMQVAHLERGGHYLTVKDNQVVQLHPS 624 (699)
T ss_pred hcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHH--HHHHHHHHHHhhccCCceEEEecCceEEeccc
Confidence 99999999999999999999999999998763 3467799999 9999999 569999999999999999
Q ss_pred CccCCCCCCCCCeeEEEecCCCCcccceeEec
Q 035953 136 NTQLSLSPPLNPAAVGHSRSPPFKSKIYGCII 167 (168)
Q Consensus 136 S~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~ 167 (168)
+++.+ .| +||+|+|.+ .|+|+||||+
T Consensus 625 ~~l~~--~P--eWVlyneFv--lt~~N~ir~v 650 (699)
T KOG0925|consen 625 TCLDH--KP--EWVLYNEFV--LTTKNFIRTV 650 (699)
T ss_pred cccCC--CC--CeEEEeeEE--eeccceeeee
Confidence 99976 45 999999999 9999999996
No 4
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.3e-35 Score=275.77 Aligned_cols=158 Identities=22% Similarity=0.361 Sum_probs=146.7
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH------------------
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR------------------ 62 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~------------------ 62 (168)
++||||+.|..+||++|+++|||+||+ ++||.+|.+++++++++|.+|.+++ |||++++|
T Consensus 497 rlakmLl~a~~~~c~~evl~IaA~Lsv-~dpf~~p~~~~~~a~~~~~~f~~~~-sD~lt~ln~~~~~~~~~~~~s~~~~~ 574 (1294)
T PRK11131 497 RLARMVLEAQKHGCVREVMIITSALSI-QDPRERPMDKQQASDEKHRRFADKE-SDFLAFVNLWNYLQEQQKALSSNQFR 574 (1294)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcccCCchhHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 479999999999999999999999999 5999999999999999999999999 99999998
Q ss_pred -HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CC-ceeeecCCCeEEEc
Q 035953 63 -WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YG-NYSTRSLPHALYVL 133 (168)
Q Consensus 63 -wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~-~Y~~~~~~~~v~iH 133 (168)
||++||||+++|+++.+++.||.++++++|++.++++++.+.|++| |++|||. ++ .|.+.. +..++||
T Consensus 575 ~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~a--ll~G~~~nva~~~~~~~~y~~~~-~~~~~ih 651 (1294)
T PRK11131 575 RLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTA--LLTGLLSHIGMKDAEKQEYTGAR-NARFSIF 651 (1294)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHH--HHhhcHHHHeeccCCCCeEEccC-CcEEEEc
Confidence 9999999999999999999999999999999988777789999999 9999998 22 577765 7889999
Q ss_pred CCCccCCCCCCCCCeeEEEecCCCCcccceeEecC
Q 035953 134 PHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA 168 (168)
Q Consensus 134 PsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~~ 168 (168)
|+|+|++ ..| +||||+|++ .|||.|+|+++
T Consensus 652 P~S~L~~-~~p--~wvv~~Elv--~Tsr~y~r~va 681 (1294)
T PRK11131 652 PGSGLFK-KPP--KWVMVAELV--ETSRLWGRIAA 681 (1294)
T ss_pred CCccccC-CCC--CEEEEEeee--ccChhhhhhhc
Confidence 9999998 566 899999999 99999999975
No 5
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=244.11 Aligned_cols=157 Identities=55% Similarity=0.820 Sum_probs=149.1
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-------------HHHHc
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-------------WCCEN 67 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~n 67 (168)
||||||+.|..++|.+|+++||||||++.++|.+|.++.-.+|.+|+.|..+. |||+++|+ ||++|
T Consensus 688 mlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~-gDhi~~L~vyn~w~es~~s~~wC~e~ 766 (902)
T KOG0923|consen 688 MLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPV-GDHIVLLNVYNQWKESKYSTQWCYEN 766 (902)
T ss_pred HHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCC-cchhhhhHHHHHHhhcchhhHHHHHh
Confidence 68999999999999999999999999988899999999999999999999888 99999999 99999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCC
Q 035953 68 YIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLS 140 (168)
Q Consensus 68 ~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~ 140 (168)
|+++++|++|.++|.||..++.+.++...++.++...||++ +.+|||+ +|.|+|+...+.|++||.|+++.
T Consensus 767 ~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~--i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~ 844 (902)
T KOG0923|consen 767 FIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKA--ITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFE 844 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHH--HhccccccceeccCCCcceeeccCcceeecCcccccc
Confidence 99999999999999999999999999988887788999999 9999999 57899999888899999999998
Q ss_pred CCCCCCCeeEEEecCCCCcccceeE
Q 035953 141 LSPPLNPAAVGHSRSPPFKSKIYGC 165 (168)
Q Consensus 141 ~~~p~~~~vvy~e~~~~~tsk~y~~ 165 (168)
..| .||||+|++ +|||.|+|
T Consensus 845 -~~P--~wvvy~eLv--~tske~mr 864 (902)
T KOG0923|consen 845 -QLP--RWVVYHELV--LTSKEFMR 864 (902)
T ss_pred -cCC--ceEEEeehh--cChHHHHH
Confidence 566 899999999 99999986
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=9.7e-30 Score=238.64 Aligned_cols=158 Identities=23% Similarity=0.380 Sum_probs=144.7
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH------------------
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR------------------ 62 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~------------------ 62 (168)
++||||+.|..+||++++++|||+||+ ++||.+|.++++++++++..|.+++ |||++++|
T Consensus 488 rlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p~~~~~~a~~~~~~f~~~~-sD~l~~L~~~~~~~~~~~~~~~~~~~ 565 (1283)
T TIGR01967 488 RLARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEKQQAADQAHARFKDPR-SDFLSRVNLWRHIEEQRQALSANQFR 565 (1283)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCcchhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhhhhccchHHH
Confidence 479999999999999999999999999 5999999999999999999999988 99999998
Q ss_pred -HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcC
Q 035953 63 -WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLP 134 (168)
Q Consensus 63 -wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHP 134 (168)
||++||||++.|+++.++++||.++++++|++..+++.+.+.+.+| |++||++ ++.|.+.. |..+.|||
T Consensus 566 ~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~--l~~g~~~~iA~~~~~~~y~~~~-g~~~~ihP 642 (1283)
T TIGR01967 566 NACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKA--LLSGLLSQIGMKDEKHEYDGAR-GRKFHIFP 642 (1283)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHH--HHHhhHHHHheeCCCCcEEecC-CcEEEECC
Confidence 8999999999999999999999999999998876666677789999 9999999 35798875 67899999
Q ss_pred CCccCCCCCCCCCeeEEEecCCCCcccceeEecC
Q 035953 135 HNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA 168 (168)
Q Consensus 135 sS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~~ 168 (168)
+|+|++ ..| +||||.|++ .|++.|+|+++
T Consensus 643 ~S~L~~-~~p--~wvv~~elv--~t~~~~ir~~a 671 (1283)
T TIGR01967 643 GSPLFK-KPP--KWVMAAELV--ETSKLYARLVA 671 (1283)
T ss_pred CccccC-CCC--CEEEEeeec--ccchheEeeec
Confidence 999988 455 999999999 89999999875
No 7
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=196.66 Aligned_cols=160 Identities=18% Similarity=0.279 Sum_probs=136.6
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH------------------
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR------------------ 62 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~------------------ 62 (168)
++||||+.|..|||+|++++|||+||. ++||+.|.+++++++++++.|..+..|||+++++
T Consensus 628 ~igK~ll~g~if~cLdp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~ 706 (924)
T KOG0920|consen 628 RIGKLLLFGAIFGCLDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKD 706 (924)
T ss_pred ccchhheehhhccccchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHH
Confidence 579999999999999999999999999 7999999999999999999888655699999999
Q ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccC------------CCCChHHHHhHHHhhchhCCCC-----------
Q 035953 63 WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC------------NLNDLDAIKFSKLYAKDFFVYG----------- 119 (168)
Q Consensus 63 wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~------------~~~~~~~i~~~~~l~~g~~~~~----------- 119 (168)
||++|||+..+|+++.++|.|+.+.+.++|+...+ ...+.+.++.+ +|+||||+-
T Consensus 707 fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~irav--l~a~lyP~i~~~~~~~~~~~ 784 (924)
T KOG0920|consen 707 FCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAV--LCAGLYPNIAFVRRMEPKSK 784 (924)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHH--HhccCCCceeeeecccCCcC
Confidence 99999999999999999999999999999875432 12467889999 999999921
Q ss_pred --ceeeecCCCeEEEcCCCccCCCCCCCCCeeEEEecCCCCccc-ceeEe
Q 035953 120 --NYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSK-IYGCI 166 (168)
Q Consensus 120 --~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk-~y~~~ 166 (168)
.|.+- ....+.|||+|+.........||++|+|.+ .|++ .|+|.
T Consensus 785 ~~~~~~~-~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~--~t~~~~~~rd 831 (924)
T KOG0920|consen 785 SVTFVTK-ADGRVIIHPSSVNEQSTGFQSPFLVFPEKV--KSTRLVSLRD 831 (924)
T ss_pred cceeecC-CceeEEEecchhhccccccCCcceEEeeec--ccCCcceeee
Confidence 11222 224799999999987544456899999999 8888 88874
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.6e-18 Score=153.56 Aligned_cols=155 Identities=19% Similarity=0.292 Sum_probs=122.6
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccCh-------------hh-------------------HHHHHHHhhc
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLK-------------DK-------------------QIHADNARMN 48 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~-------------~~-------------------~~~~~~~r~~ 48 (168)
++||||+.|.+.+|+...+.++|+||+ ..+|+... +. +.+...++.+
T Consensus 786 rfsKmL~~~~Q~~~lpy~i~lvsaLsv-~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~r 864 (1172)
T KOG0926|consen 786 RFSKMLATSDQHNLLPYNIALVSALSV-YEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSR 864 (1172)
T ss_pred hHHHHHHHHHhhcchhHHHHHHHHHhc-cchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999 58886411 11 1122335566
Q ss_pred cccCCCChHHHHHH-------------HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccc-------cC-CCC--ChHHH
Q 035953 49 FHLGDVGDHITLLR-------------WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEV-------NC-NLN--DLDAI 105 (168)
Q Consensus 49 f~~~~~sDhltll~-------------wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~-------~~-~~~--~~~~i 105 (168)
|.... ||-|+++. ||..|||..++|.++.++|+||..+++..++.. .. .+. ....+
T Consensus 865 f~~l~-sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lL 943 (1172)
T KOG0926|consen 865 FSNLD-SDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLL 943 (1172)
T ss_pred hccCC-ccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHH
Confidence 77777 99999999 999999999999999999999999998554322 11 122 34578
Q ss_pred HhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCCCCCCCCeeEEEecCCCCccccee
Q 035953 106 KFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYG 164 (168)
Q Consensus 106 ~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~ 164 (168)
++. +|+||.+ -..|.+..-+.+++|||.|+|+. +.| +||+|+|++ .|...|+
T Consensus 944 rQ~--i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~-~ap--e~viY~el~--~~~~~~~ 1002 (1172)
T KOG0926|consen 944 RQM--ICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLIN-SAP--ELVIYQELL--LTNRPYM 1002 (1172)
T ss_pred HHH--HHHHHHHHHHHhccccccchhhhcCceeeeehhhhhc-cCc--cceehhhhh--hcCCccc
Confidence 999 9999999 12577777788999999999998 677 999999999 6665543
No 9
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.71 E-value=2.5e-17 Score=117.44 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCccccCC-----------C--CChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCC
Q 035953 82 DQLEGLLTRVEIEVNCN-----------L--NDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSL 141 (168)
Q Consensus 82 ~QL~~~l~~~~~~~~~~-----------~--~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~ 141 (168)
+||.++|++.|+...+. . ++.+.|++| ||+|||+ ++.|+++.++..++|||+|++++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~- 77 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAA--LCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFK- 77 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHH--HHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHH--HHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccc-
Confidence 69999999998865432 1 345789999 9999999 57899998888999999999977
Q ss_pred CCCCCCeeEEEecCCCCcccceeEec
Q 035953 142 SPPLNPAAVGHSRSPPFKSKIYGCII 167 (168)
Q Consensus 142 ~~p~~~~vvy~e~~~~~tsk~y~~~~ 167 (168)
..| +||||+|++ .|+|.|+|.+
T Consensus 78 ~~p--~~vvy~e~~--~t~k~y~~~~ 99 (114)
T PF07717_consen 78 KPP--KWVVYHELV--RTSKPYMRDV 99 (114)
T ss_dssp TT---SEEEEEEEE--ESSSEEEEEE
T ss_pred ccc--ccchhhhhe--ecCCcEEEEC
Confidence 566 899999999 8999999975
No 10
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.7e-16 Score=145.11 Aligned_cols=157 Identities=22% Similarity=0.144 Sum_probs=125.8
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCC---ccccChhhHH---HHHHHh-hcccc---CCCChHHHHHH--------
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNS---IFYRLKDKQI---HADNAR-MNFHL---GDVGDHITLLR-------- 62 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~---~f~~p~~~~~---~~~~~r-~~f~~---~~~sDhltll~-------- 62 (168)
++||||+.|..+||++|+++|||+||++ + .|.++.+.++ +.+.++ ..+.. +. |||+++++
T Consensus 469 rLA~mLl~a~~~g~~~e~~~Ias~Ls~~-~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~d~~~ll~~~~~~i~~ 546 (845)
T COG1643 469 RLARMLLTAPEGGCLGEAATIASMLSEQ-DRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPR-GDHLLLLEAFPDRIAR 546 (845)
T ss_pred HHHHHHHhccccCcHHHHHHHHHhhccC-CCcchhccccchhhHHHHHHHHHHHHhccCCCcc-hHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999994 6 5887766555 344333 44444 56 99999999
Q ss_pred -----------HHHHccCCHHHHHHHHHHHHHHHHHHHh-cCccccCCC------------------CChHHHHhHHHhh
Q 035953 63 -----------WCCENYIQVKSMKRARDIQDQLEGLLTR-VEIEVNCNL------------------NDLDAIKFSKLYA 112 (168)
Q Consensus 63 -----------wC~~n~l~~~~l~~~~~ir~QL~~~l~~-~~~~~~~~~------------------~~~~~i~~~~~l~ 112 (168)
||..++++.++|.++..++.|+.....+ .+.+....+ ..++.++++ ++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--l~ 624 (845)
T COG1643 547 KRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGA--LA 624 (845)
T ss_pred hhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhh--hh
Confidence 9999999999999999999999998877 443332211 136889999 99
Q ss_pred chhCC-------CC-ceeeecCCCeEEEcCCCccCCCCCCCCCeeEEEecCCCCcccceeE
Q 035953 113 KDFFV-------YG-NYSTRSLPHALYVLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGC 165 (168)
Q Consensus 113 ~g~~~-------~~-~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~ 165 (168)
+|++. ++ .|.+..++..+.+||+|+-.....+ +|++|++.+ .|++.|++
T Consensus 625 a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~--~~~~~~~~~--~~~~~~~~ 681 (845)
T COG1643 625 AGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLL--EWIKYAEFL--RTRKGYLR 681 (845)
T ss_pred hheecceeeeeccccccccCCCCceeEecchhHhhcccCc--chHHHHHHH--HHHHHHHh
Confidence 99999 23 4888888999999999973332444 999999999 99999987
No 11
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.21 E-value=4e-12 Score=89.23 Aligned_cols=59 Identities=41% Similarity=0.625 Sum_probs=39.5
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHH--HHhh---------ccccCCCChHHHHH
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHAD--NARM---------NFHLGDVGDHITLL 61 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~--~~r~---------~f~~~~~sDhltll 61 (168)
++||||+.|..+||++++++|||+||+ +++|..|.+.+++.+ +.+. .+.+.. |||+|+|
T Consensus 33 ~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sDhltlL 102 (102)
T PF04408_consen 33 RLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDE-SDHLTLL 102 (102)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHHH--HHHTT----------BTT-BHHHHHH
T ss_pred HhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCC-CCHHhcC
Confidence 479999999999999999999999999 799999764433222 2333 346777 9999986
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.96 E-value=1.4e-09 Score=99.31 Aligned_cols=149 Identities=13% Similarity=0.188 Sum_probs=107.7
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCcccc--ChhhHHHHHHHhhccccCCCChHHHHHH----------------
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYR--LKDKQIHADNARMNFHLGDVGDHITLLR---------------- 62 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~--p~~~~~~~~~~r~~f~~~~~sDhltll~---------------- 62 (168)
+++||++.+..++|.+-|+.+|+.+|. ..+|+. |...+- .-.++.|++..++||.....
T Consensus 857 ~~~k~~~lg~~~g~~~~m~~~as~~s~-~~~~~~~~~~~~rl--~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e 933 (1282)
T KOG0921|consen 857 RIGKMMILGTALGAGSVMCDVASAMSF-PTPFVPREKHHSRL--SGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAE 933 (1282)
T ss_pred cccceeeechhhccchhhhhhhccccc-cccccccccccccc--ccchhhccccccccchhhhhhhhhhHHHhhhhhhhh
Confidence 368999999999999999999999999 577763 111121 12345566665667766655
Q ss_pred --HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccC--------C-C-CChHHHHhHHHhhchhCCCCc-e----eee-
Q 035953 63 --WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC--------N-L-NDLDAIKFSKLYAKDFFVYGN-Y----STR- 124 (168)
Q Consensus 63 --wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~--------~-~-~~~~~i~~~~~l~~g~~~~~~-Y----~~~- 124 (168)
||...+++.+.|+.....++||...|++.+++... + + ++...++.. ||.++|++.. | +.+
T Consensus 934 ~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~l--L~~~lypn~~~y~ekrkvLt 1011 (1282)
T KOG0921|consen 934 REFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSL--LVMALYPNVAYYVEKRKVLT 1011 (1282)
T ss_pred hhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHH--HHhhcCCccceeccceeEEe
Confidence 99999999999999999999999999988765421 1 2 233445555 8888888432 2 233
Q ss_pred cCCCeEEEcCCCccC--CC---CCCCCCeeEEEecC
Q 035953 125 SLPHALYVLPHNTQL--SL---SPPLNPAAVGHSRS 155 (168)
Q Consensus 125 ~~~~~v~iHPsS~l~--~~---~~p~~~~vvy~e~~ 155 (168)
.++....||-+|++. .+ .+| .||.||.|.+
T Consensus 1012 Te~~~alihk~Svncp~S~qdM~fP-sPFFVFGEKI 1046 (1282)
T KOG0921|consen 1012 TEQSSALIHKYSVNCPNSRQEMDFP-SPFFVFGEKI 1046 (1282)
T ss_pred ecchhhhhhhhcccCCCcccccCCC-Cceeeechhh
Confidence 345667888888886 22 456 5999999999
No 13
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=98.87 E-value=6.7e-10 Score=75.99 Aligned_cols=58 Identities=47% Similarity=0.699 Sum_probs=50.0
Q ss_pred CeeeeEeccCCC-CChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccC-CCChHHHHH
Q 035953 1 MLSKTIIASDKY-KCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLG-DVGDHITLL 61 (168)
Q Consensus 1 ~lsK~Ll~s~~~-~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~-~~sDhltll 61 (168)
++||||+.|..+ +|.+++++|+|++++ .++|..| +.+.+....|..|... . |||++++
T Consensus 33 rla~~Ll~a~~~~~c~~~~~~i~a~ls~-~~~~~~~-~~~~~~~~~~~~~~~~~~-~D~~~~l 92 (92)
T smart00847 33 RLAKMLLAAAELFGCLDEILTIAAMLSV-GDPFPRP-EKRAEADAARRRFASGRE-SDHLTLL 92 (92)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHhcC-CCCcCCc-hHHHHHHHHHHHccCCCC-CChhhhC
Confidence 479999999999 999999999999999 5888877 5566777788889877 6 9999874
No 14
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.86 E-value=7.8e-05 Score=69.36 Aligned_cols=122 Identities=14% Similarity=-0.020 Sum_probs=76.3
Q ss_pred CeeeeEeccCCCCChH--HHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHHHHHHccCCHHHHHHHH
Q 035953 1 MLSKTIIASDKYKCLV--EIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRAR 78 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~--~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~wC~~n~l~~~~l~~~~ 78 (168)
++|||||.|.++||.. .++.+||+|+. +.+ .. ..+.+|++.-+. ...+..+.
T Consensus 420 rla~~ll~a~~~~~~~l~~a~~laall~e-~~~--~~---------------~~d~~~~l~~~~--------~~~~~~~~ 473 (812)
T PRK11664 420 RLAAMLVAAKEDDEAALATAAKLAAILEE-PPR--SG---------------SSDLGVALSRKQ--------PHWQQRAQ 473 (812)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhhcc-CCC--CC---------------cccHHHHHHHHH--------HHHHHHHH
Confidence 5799999999999653 66677777765 211 00 001134443222 12234455
Q ss_pred HHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCCCCCCCCCeeEE
Q 035953 79 DIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVG 151 (168)
Q Consensus 79 ~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy 151 (168)
++.+|+.... + . .+.+.+.++ ++.||++ ++.|..+.+|..+.+||+|.|.+. +|+|+
T Consensus 474 ~~~~~~~~~~---~-~-----~~~~~~~~~--la~aypdriA~~r~~~~~~~l~~G~~a~l~~~~~l~~~-----~~lv~ 537 (812)
T PRK11664 474 QLLKRLNVRG---G-E-----ADSSLIAPL--LALAFPDRIARRRGQDGRYQLANGMGAMLDADDALSRH-----EWLIA 537 (812)
T ss_pred HHHHHHHhhc---c-c-----CChHHHHHH--HHHHCHHHHhhhcCCCCeEEeeCCCeEEECCCCcccCC-----CeEEE
Confidence 5555554321 1 1 133457778 9999988 234556668999999999999762 89999
Q ss_pred EecCCCCcc-cceeEe
Q 035953 152 HSRSPPFKS-KIYGCI 166 (168)
Q Consensus 152 ~e~~~~~ts-k~y~~~ 166 (168)
.|+. .++ +.+.||
T Consensus 538 a~~~--~~~~~~~~ri 551 (812)
T PRK11664 538 PLLL--QGSASPDARI 551 (812)
T ss_pred EEhh--ccCcccccee
Confidence 9997 553 566554
No 15
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.85 E-value=0.00011 Score=68.43 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=77.2
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHHHHHHccCCHHHHHHHHHH
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLRWCCENYIQVKSMKRARDI 80 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~wC~~n~l~~~~l~~~~~i 80 (168)
++||||+.|..+||.+++++|||+||. ++++-. .. +|....+++.+... ......+.++
T Consensus 417 ~l~~~ll~~~~~~~~~~~~~iaa~ls~-~~~~~~-----------------~~-~d~~~~~~~~~~~~--~~~~~~~~~~ 475 (819)
T TIGR01970 417 RLAAMLLSAHSTGLAALACDLAALLEE-RGLPRQ-----------------GG-ADLMNRLHRLQQGR--QGRGQRAQQL 475 (819)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHcC-CCCCCC-----------------Cc-ccHHHHHHHHhhcc--hhhHHHHHHH
Confidence 479999999999999999999999999 454321 13 67766666323221 2233344555
Q ss_pred HHHHHHHHHhcCcccc-CCCCChHHHHhHHHhhchhCC--------CCceeeecCCCeEEEcCCCccCCCCCCCCCeeEE
Q 035953 81 QDQLEGLLTRVEIEVN-CNLNDLDAIKFSKLYAKDFFV--------YGNYSTRSLPHALYVLPHNTQLSLSPPLNPAAVG 151 (168)
Q Consensus 81 r~QL~~~l~~~~~~~~-~~~~~~~~i~~~~~l~~g~~~--------~~~Y~~~~~~~~v~iHPsS~l~~~~~p~~~~vvy 151 (168)
.+|+.+.+ +.... ........+-.+ ++.+|.+ .+.|. +.+|.-+.++|.|.|.+. +|+|-
T Consensus 476 ~~~~~~~~---~~~~~~~~~~~~~~~g~l--la~a~pdria~~r~~~~~y~-l~~G~~~~l~~~~~l~~~-----~~l~~ 544 (819)
T TIGR01970 476 AKKLRRRL---RFSQADSGAIASHALGLL--LALAFPDRIAKRRGQPGRYQ-LANGRGAVLSAEDALARE-----PWLVA 544 (819)
T ss_pred HHHHHHHh---CcCcCCCcccccchHhHH--HhhhChHhheeccCCCCeEE-CCCCCeeEeCCCCcccCC-----CeEEE
Confidence 55665433 22101 011110113334 7777777 23464 457888999999999873 89999
Q ss_pred EecC
Q 035953 152 HSRS 155 (168)
Q Consensus 152 ~e~~ 155 (168)
.|+.
T Consensus 545 a~~~ 548 (819)
T TIGR01970 545 ADLG 548 (819)
T ss_pred EEee
Confidence 9986
No 16
>PF03855 M-factor: M-factor; InterPro: IPR005555 The M-factor is a pheromone produced upon nitrogen starvation. The production of M-factor is increased by the pheromone signal. The protein undergoes post-translational modification to remove the C-terminal signal peptide, the carboxy-terminal cysteine residue is carboxy-methylated and S-alkylated with a farnesyl residue [].
Probab=54.21 E-value=7.5 Score=22.34 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred EEcCCCccCCCC-CCCCCeeEEEecCCCCccc-ceeEecC
Q 035953 131 YVLPHNTQLSLS-PPLNPAAVGHSRSPPFKSK-IYGCIIA 168 (168)
Q Consensus 131 ~iHPsS~l~~~~-~p~~~~vvy~e~~~~~tsk-~y~~~~~ 168 (168)
..|.||++.... .| -.++=+.-+.+.|.| -|+|.||
T Consensus 7 ~~~sssivna~n~np--~~~~~t~~iknytpkvpymcvia 44 (44)
T PF03855_consen 7 NTHSSSIVNAYNNNP--TDVVKTQNIKNYTPKVPYMCVIA 44 (44)
T ss_pred cccchhhhcccCCCh--hHhhcccccccCCCCCceEEeeC
Confidence 568888886422 23 335555555556665 5899886
No 17
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=28.29 E-value=1.6e+02 Score=18.96 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=19.1
Q ss_pred ChHHHHHH-HHHHccCCHHHHHHHHHHHHHHHHHHHh
Q 035953 55 GDHITLLR-WCCENYIQVKSMKRARDIQDQLEGLLTR 90 (168)
Q Consensus 55 sDhltll~-wC~~n~l~~~~l~~~~~ir~QL~~~l~~ 90 (168)
++..-.+. ||.+|+... ...-....++|...+..
T Consensus 25 ~~lY~~Y~~wc~~ng~~~--~ls~~~F~~~L~~~~~~ 59 (86)
T PF03288_consen 25 KDLYDAYKEWCEENGYKP--PLSKRKFGKELKQYFPE 59 (86)
T ss_dssp TBHHHHHHHHHHHTT-S------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCc--ccCHHHHHHHHHHHhhh
Confidence 55555555 999999987 33334455666666544
No 18
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.57 E-value=1.2e+02 Score=16.70 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCccccCCC
Q 035953 82 DQLEGLLTRVEIEVNCNL 99 (168)
Q Consensus 82 ~QL~~~l~~~~~~~~~~~ 99 (168)
.||..-|.+.|++.....
T Consensus 7 ~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 578888888888776554
No 19
>PF14893 PNMA: PNMA
Probab=23.03 E-value=80 Score=26.74 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=32.7
Q ss_pred HHHHH-HHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCCCCceeeec
Q 035953 58 ITLLR-WCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFVYGNYSTRS 125 (168)
Q Consensus 58 ltll~-wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~~~~Y~~~~ 125 (168)
+++|. ||+-.++|.+ +-+--.|||..... +.|..+ +-+++.+=|.|+.++
T Consensus 3 ~~lL~dWCr~m~~~~~-------------r~lLv~giP~dc~~---~ei~e~--l~~~l~plg~yrvl~ 53 (331)
T PF14893_consen 3 LALLEDWCRGMGVDPQ-------------RALLVLGIPEDCEE---AEIEEA--LQAALSPLGRYRVLG 53 (331)
T ss_pred hHHHHHHHHhcCcChh-------------hhheeecCCCCCCH---HHHHHH--HHHhhcccccceehh
Confidence 56777 9999999963 22223477765543 455666 666787777787764
No 20
>PRK13694 hypothetical protein; Provisional
Probab=20.28 E-value=96 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHccCCHHHHHHHHHHHHH
Q 035953 63 WCCENYIQVKSMKRARDIQDQ 83 (168)
Q Consensus 63 wC~~n~l~~~~l~~~~~ir~Q 83 (168)
=+..++.+.++|+.+.++|++
T Consensus 41 EAK~~GfD~K~~r~ii~lRK~ 61 (83)
T PRK13694 41 EAKGNGFDVKALKTIIRLRKK 61 (83)
T ss_pred HHHhcCCcHHHHHHHHHHHcC
Confidence 578899999999999998876
Done!