Query 035953
Match_columns 168
No_of_seqs 107 out of 1097
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i4u_A ATP-dependent RNA helic 100.0 1.2E-42 4E-47 281.6 13.9 159 1-168 54-232 (270)
2 2xau_A PRE-mRNA-splicing facto 100.0 3.8E-32 1.3E-36 246.7 14.2 158 1-168 525-711 (773)
3 1oeg_A Apolipoprotein E; siali 48.1 5.5 0.00019 20.1 0.6 16 77-92 3-18 (26)
4 2zj8_A DNA helicase, putative 46.8 2.8 9.5E-05 37.1 -1.1 38 2-39 495-536 (720)
5 2va8_A SSO2462, SKI2-type heli 44.2 20 0.00069 31.4 4.1 38 2-39 511-551 (715)
6 2p6r_A Afuhel308 helicase; pro 43.0 45 0.0015 29.2 6.1 36 2-37 492-529 (702)
7 1oef_A Apolipoprotein E; glyco 36.5 26 0.0009 17.2 2.1 15 77-91 7-21 (26)
8 1iio_A Conserved hypothetical 17.7 64 0.0022 20.8 1.8 22 76-97 8-29 (84)
9 2kdd_A Borealin; protein dimer 17.6 1.7E+02 0.0059 18.2 3.7 25 67-91 48-72 (76)
10 1u7l_A Vacuolar ATP synthase s 14.1 3.6E+02 0.012 22.2 6.0 54 60-115 288-348 (392)
No 1
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=281.63 Aligned_cols=159 Identities=34% Similarity=0.579 Sum_probs=149.9
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-------------HHHHc
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-------------WCCEN 67 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-------------wC~~n 67 (168)
++||||+.|..+||++++++|||+||+ ++||++|.+.+++++++|.+|.+++ |||+|++| ||++|
T Consensus 54 ~lakmLl~a~~~~c~~~~l~iaA~Ls~-~~~f~~p~~~~~~a~~~~~~f~~~~-sD~ltlLn~~~~~~~~~~~~~wC~~~ 131 (270)
T 3i4u_A 54 MLCKMLIMSVHLGCSEEMLTIVSMLSV-QNVFYRPKDKQALADQKKAKFHQTE-GDHLTLLAVYNSWKNNKFSNPWCYEN 131 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTS-SCCBCCCGGGHHHHHHHHHTTCBTT-BHHHHHHHHHHHHHHTTTCHHHHHHT
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHCC-CccccCCchhHHHHHHHHHHccCCC-ChHHHHHHHHHHHHHcCchhhHHHHh
Confidence 479999999999999999999999999 6999999999999999999999999 99999998 99999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHhHHHhhchhCC-------CCceeeecCCCeEEEcCCCccCC
Q 035953 68 YIQVKSMKRARDIQDQLEGLLTRVEIEVNCNLNDLDAIKFSKLYAKDFFV-------YGNYSTRSLPHALYVLPHNTQLS 140 (168)
Q Consensus 68 ~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~~~~~~i~~~~~l~~g~~~-------~~~Y~~~~~~~~v~iHPsS~l~~ 140 (168)
|||+++|+++.++|+||.+++++.+++..+++.+.+.|++| ||+|||+ ++.|+++.+|+.|+|||||+|++
T Consensus 132 fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~--L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~ 209 (270)
T 3i4u_A 132 FIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKA--ICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN 209 (270)
T ss_dssp TBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHH--HHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHH--HHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcC
Confidence 99999999999999999999999999887777788999999 9999999 56899999999999999999998
Q ss_pred CCCCCCCeeEEEecCCCCcccceeEecC
Q 035953 141 LSPPLNPAAVGHSRSPPFKSKIYGCIIA 168 (168)
Q Consensus 141 ~~~p~~~~vvy~e~~~~~tsk~y~~~~~ 168 (168)
..| +||||+|++ .|||.|+|.++
T Consensus 210 -~~p--~wvvy~Elv--~Tsk~y~r~vt 232 (270)
T 3i4u_A 210 -RQP--EWVVYHELV--LTTKEYMREVT 232 (270)
T ss_dssp -SCC--SEEEEEEEE--ESSSEEEEEEE
T ss_pred -CCC--CEEEEEehh--hhhHhHHHhcc
Confidence 456 999999999 99999999863
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.98 E-value=3.8e-32 Score=246.66 Aligned_cols=158 Identities=32% Similarity=0.499 Sum_probs=142.4
Q ss_pred CeeeeEeccCCCCChHHHHHHHHHhhcCCCccccChhhHHHHHHHhhccccCCCChHHHHHH-----------------H
Q 035953 1 MLSKTIIASDKYKCLVEIIIIAAMLSIGNSIFYRLKDKQIHADNARMNFHLGDVGDHITLLR-----------------W 63 (168)
Q Consensus 1 ~lsK~Ll~s~~~~C~~~~~~IaA~LSv~~~~f~~p~~~~~~~~~~r~~f~~~~~sDhltll~-----------------w 63 (168)
++||||+.|..++|++++++||||||+ +++|++|.+.+++++.+|..|.+++ |||+++++ |
T Consensus 525 ~~~~~l~~~~~~~c~~~~l~i~a~ls~-~~~f~~~~~~~~~~~~~~~~f~~~~-~D~~~~l~~~~~~~~~~~~~~~~~~~ 602 (773)
T 2xau_A 525 MLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFIRPTKDKKRADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKW 602 (773)
T ss_dssp HHHHHHHHGGGGTCHHHHHHHHHHHTS-CCCBCCCTTCHHHHHHHHHTTCCTT-BHHHHHHHHHHHHTSHHHHHHCHHHH
T ss_pred HHHHHHHhhcccCchhHHHHHHHhccc-CCcccCChHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHhccccchHHHH
Confidence 378999999999999999999999999 6999999999999999999999989 99999998 8
Q ss_pred HHHccCCHHHHHHHHHHHHHHHHHHHhcCccccCCC----CChHHHHhHHHhhchhCC-------CCc-eeeecCCCeEE
Q 035953 64 CCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNCNL----NDLDAIKFSKLYAKDFFV-------YGN-YSTRSLPHALY 131 (168)
Q Consensus 64 C~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~~~----~~~~~i~~~~~l~~g~~~-------~~~-Y~~~~~~~~v~ 131 (168)
|++||||+++|+++.++|+||.+++++.+++..+++ ++++.|++| |++|||+ +|. |.++.++..|+
T Consensus 603 c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~--l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ 680 (773)
T 2xau_A 603 CRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKA--LASGFFMQVAKKRSGAKGYITVKDNQDVL 680 (773)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHH--HHHHHTTSEEEECCC--CEEETTTCCEEE
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHH--HHHhChHhheeeccCCCcceEeeCCCEEE
Confidence 999999999999999999999999999998775532 345789999 9999999 344 99999999999
Q ss_pred EcCCCccCCCCCCCCCeeEEEecCCCCcccceeEecC
Q 035953 132 VLPHNTQLSLSPPLNPAAVGHSRSPPFKSKIYGCIIA 168 (168)
Q Consensus 132 iHPsS~l~~~~~p~~~~vvy~e~~~~~tsk~y~~~~~ 168 (168)
|||+|+|.. .| +||||+|++ .|+|.|+|.++
T Consensus 681 ihp~s~l~~--~~--~~~v~~e~~--~t~~~~~~~~~ 711 (773)
T 2xau_A 681 IHPSTVLGH--DA--EWVIYNEFV--LTSKNYIRTVT 711 (773)
T ss_dssp ECTTCCCCT--TC--SEEEEEEEE--ESSSEEEEEEE
T ss_pred ECCCcccCC--CC--CEEEEEEee--ccchhheeecc
Confidence 999999954 35 999999999 89999999863
No 3
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=48.10 E-value=5.5 Score=20.14 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhcC
Q 035953 77 ARDIQDQLEGLLTRVE 92 (168)
Q Consensus 77 ~~~ir~QL~~~l~~~~ 92 (168)
+.++|+|+..++.+..
T Consensus 3 ~e~mr~Q~~~lveKvq 18 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQ 18 (26)
T ss_dssp HHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6789999999998763
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=46.79 E-value=2.8 Score=37.08 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=30.1
Q ss_pred eeeeEeccCCC----CChHHHHHHHHHhhcCCCccccChhhH
Q 035953 2 LSKTIIASDKY----KCLVEIIIIAAMLSIGNSIFYRLKDKQ 39 (168)
Q Consensus 2 lsK~Ll~s~~~----~C~~~~~~IaA~LSv~~~~f~~p~~~~ 39 (168)
.+|+++.+... +|..+++.|+|+++.-+++|++|.+.+
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~ 536 (720)
T 2zj8_A 495 TAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFE 536 (720)
T ss_dssp HHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHH
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHH
Confidence 35677777766 899999999999986468999987644
No 5
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=44.24 E-value=20 Score=31.38 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=29.8
Q ss_pred eeeeEeccCCC---CChHHHHHHHHHhhcCCCccccChhhH
Q 035953 2 LSKTIIASDKY---KCLVEIIIIAAMLSIGNSIFYRLKDKQ 39 (168)
Q Consensus 2 lsK~Ll~s~~~---~C~~~~~~IaA~LSv~~~~f~~p~~~~ 39 (168)
++||++.+... .|..+++.|+|+.+.-+++|++|.+..
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~ 551 (715)
T 2va8_A 511 TADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEE 551 (715)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHH
T ss_pred HHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHH
Confidence 46788888776 899999999998874368999886544
No 6
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=43.01 E-value=45 Score=29.16 Aligned_cols=36 Identities=6% Similarity=-0.152 Sum_probs=30.4
Q ss_pred eeeeEeccCCC--CChHHHHHHHHHhhcCCCccccChh
Q 035953 2 LSKTIIASDKY--KCLVEIIIIAAMLSIGNSIFYRLKD 37 (168)
Q Consensus 2 lsK~Ll~s~~~--~C~~~~~~IaA~LSv~~~~f~~p~~ 37 (168)
.+|+++.+... .|..+++.|+|+.+..+++++++.+
T Consensus 492 ~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e 529 (702)
T 2p6r_A 492 TGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD 529 (702)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT
T ss_pred HHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch
Confidence 46888889888 8999999999988864579999877
No 7
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=36.50 E-value=26 Score=17.18 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhc
Q 035953 77 ARDIQDQLEGLLTRV 91 (168)
Q Consensus 77 ~~~ir~QL~~~l~~~ 91 (168)
+.++|.|+..++.++
T Consensus 7 ~e~ik~q~~~i~e~i 21 (26)
T 1oef_A 7 VEDMQRQWAGLVEKV 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 678999999888654
No 8
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=17.66 E-value=64 Score=20.83 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhcCccccC
Q 035953 76 RARDIQDQLEGLLTRVEIEVNC 97 (168)
Q Consensus 76 ~~~~ir~QL~~~l~~~~~~~~~ 97 (168)
.-.+||.||...++...+|+.+
T Consensus 8 ~~~ei~~qi~~a~~~a~FPI~s 29 (84)
T 1iio_A 8 VKEDIRGQIIGALAGADFPINS 29 (84)
T ss_dssp HHHHHHHHHHHHHTTSSSTTBH
T ss_pred hHHHHHHHHHHHHcCCCCCCCC
Confidence 3468999999999999888754
No 9
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere, chromosomal protein, cytoplasm, mitosis, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=17.60 E-value=1.7e+02 Score=18.20 Aligned_cols=25 Identities=4% Similarity=0.295 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHhc
Q 035953 67 NYIQVKSMKRARDIQDQLEGLLTRV 91 (168)
Q Consensus 67 n~l~~~~l~~~~~ir~QL~~~l~~~ 91 (168)
+.|++++|.+++++-..|..+|...
T Consensus 48 ~~Ld~eAl~nIk~Ls~rl~~~C~s~ 72 (76)
T 2kdd_A 48 AQLDPEALGNIKKLSNRLAQICSSI 72 (76)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhcCHHHHHHHHHHHHHHHHHHhhh
Confidence 4899999999999999999998765
No 10
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=14.06 E-value=3.6e+02 Score=22.19 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=26.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHhcCccccC-------CCCChHHHHhHHHhhchh
Q 035953 60 LLRWCCENYIQVKSMKRARDIQDQLEGLLTRVEIEVNC-------NLNDLDAIKFSKLYAKDF 115 (168)
Q Consensus 60 ll~wC~~n~l~~~~l~~~~~ir~QL~~~l~~~~~~~~~-------~~~~~~~i~~~~~l~~g~ 115 (168)
+++||+-+|-..-..-.=.++-+=+.+-+-+.|+|+.- .+.....+++. |-.-|
T Consensus 288 L~r~~~~~fse~f~awiHiKalRvFVESVLRYGLP~~F~a~li~p~~k~~kKlr~~--L~~~f 348 (392)
T 1u7l_A 288 LVRLAKTAYVDVFINWFHIKALRVYVESVLRYGLPPHFNIKIIAVPPKNLSKCKSE--LIDAF 348 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEEECTTCHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhhhhhcCCCCcceEEEEEeCCccHHHHHHH--HHHHh
Confidence 44588876533221111122222333344567988752 33456677776 64433
Done!